Mon May 1 00:58:07 UTC 2023 I: starting to build kmc/bookworm/amd64 on jenkins on '2023-05-01 00:57' Mon May 1 00:58:07 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_31/6661/console.log Mon May 1 00:58:07 UTC 2023 I: Downloading source for bookworm/kmc=3.2.1+dfsg-1 --2023-05-01 00:58:07-- http://cdn-fastly.deb.debian.org/debian/pool/main/k/kmc/kmc_3.2.1%2bdfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2262 (2.2K) [text/prs.lines.tag] Saving to: ‘kmc_3.2.1+dfsg-1.dsc’ 0K .. 100% 180M=0s 2023-05-01 00:58:07 (180 MB/s) - ‘kmc_3.2.1+dfsg-1.dsc’ saved [2262/2262] Mon May 1 00:58:07 UTC 2023 I: kmc_3.2.1+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: kmc Binary: kmc, libkmc-dev Architecture: any Version: 3.2.1+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Jorge Soares , Sascha Steinbiss , Kevin Murray , Étienne Mollier Homepage: http://sun.aei.polsl.pl/kmc Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/kmc Vcs-Git: https://salsa.debian.org/med-team/kmc.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, help2man, asciidoctor, d-shlibs, libsimde-dev, debhelper Package-List: kmc deb science optional arch=any libkmc-dev deb libdevel optional arch=any Checksums-Sha1: d26bef0d46492dbb9cb8b7a82861aa25bc4f5d2b 564512 kmc_3.2.1+dfsg.orig.tar.xz 979b6804f32d0e24f463267c215310b021c1acc7 33060 kmc_3.2.1+dfsg-1.debian.tar.xz Checksums-Sha256: c9033c3754ec435d0622c64632adc04ff6bb76166aeb575101f1b871b0863984 564512 kmc_3.2.1+dfsg.orig.tar.xz dc25d8867c0c87ad2939ef07d34149aead4ea9fc67bc5544f18bb0421bcf0dc6 33060 kmc_3.2.1+dfsg-1.debian.tar.xz Files: 6ecde5084f98bea6bf65aa3b96b8d8e8 564512 kmc_3.2.1+dfsg.orig.tar.xz 4156e237e8dab6d1c48a226c651c2040 33060 kmc_3.2.1+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmHkLkYUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpyXg/+O+QC2NsPZo688HSdhatSM5IRBHVy dkafgQcBSeEx0Z2ZsepXVhnpF3iVlhMqTkAkzsWo/i2gsH+Sahh/TrjpltaAnZOR GZxP4oNeUS7Q5emK1nNCh7fHgOOHEGUFaiKnLE3kxsAeXl2D51n/F/d9aakeyNJS xGZOWYi+c0Gk01xYDv/ts5dpF53jF6xa/G4NYSyMVb4yh471I7X0vQBZt5fSIiRT XY24fRkgh5qygYeG5bfz4ucrE3zqbsfy1lU0cIKN1BSRPJ3ZR1jYgEGJGiTy6rAB 59oR+NyI9lb7OzHvPAv3zJrkb4cKNrnNdz2ZkY29luYzJcCqFFNgIcDpuNDnKkL1 EpEEm5Xx/gVyQ9sg7f+I5p13KBddQGQm00u75kCcas80+0nJWytQFV5hzP630E4t 8NnY4ujozxWXDysL5GEqrImhSI5k1eXT/1QNeRGNaIrO95iYqQ5YuGJQRVuln4NV 3UXO04D0SiFUmzf1kkhJtuOGAlNUsZT7w1F5KzJw/YMRYqkTBuzJhEvsmMgmnaXj ewD1ihCcXUrcuClDezA0SZPXAIs23pesusSeZbqUhhPTnCdjn1aufK2RzCgDIBA5 YEsDQgVBbG9voXXRywi5eX+vWt/TQmMfb2uTOM/cEVuV1O6Tl0+1GoKl03tfQmPX V34NdObhBplS3lk= =BcmA -----END PGP SIGNATURE----- Mon May 1 00:58:07 UTC 2023 I: Checking whether the package is not for us Mon May 1 00:58:07 UTC 2023 I: Starting 1st build on remote node ionos11-amd64.debian.net. Mon May 1 00:58:07 UTC 2023 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Mon May 1 01:09:15 UTC 2023 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Apr 30 12:58:10 -12 2023 I: pbuilder-time-stamp: 1682902690 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [kmc_3.2.1+dfsg-1.dsc] I: copying [./kmc_3.2.1+dfsg.orig.tar.xz] I: copying [./kmc_3.2.1+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Jan 16 02:40:06 2022 -12 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./kmc_3.2.1+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting kmc in kmc-3.2.1+dfsg dpkg-source: info: unpacking kmc_3.2.1+dfsg.orig.tar.xz dpkg-source: info: unpacking kmc_3.2.1+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-shared-libs dpkg-source: info: applying makefile.patch dpkg-source: info: applying 0005-Add-static-library-target-to-makefile.patch dpkg-source: info: applying disable-python-bindings.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying simde dpkg-source: info: applying support-mixed-march.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2117363/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='32fd405f0c6f46bbb8f1e4b79af4f38d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2117363' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.dC9J1U4b/pbuilderrc_iXmO --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.dC9J1U4b/b1 --logfile b1/build.log kmc_3.2.1+dfsg-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 04:31 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar -rwxr-xr-x 1 root root 14520 Nov 2 04:31 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/2117363/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, help2man, asciidoctor, d-shlibs, libsimde-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on asciidoctor; however: Package asciidoctor is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: asciidoctor{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libbz2-dev{a} libdebhelper-perl{a} libedit2{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libruby{a} libruby3.1{a} libsimde-dev{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} openssl{a} po-debconf{a} rake{a} ruby{a} ruby-asciidoctor{a} ruby-net-telnet{a} ruby-rubygems{a} ruby-sdbm{a} ruby-webrick{a} ruby-xmlrpc{a} ruby3.1{a} rubygems-integration{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc curl fonts-lato libarchive-cpio-perl libgpm2 libjs-jquery libltdl-dev libmail-sendmail-perl lynx wget zip 0 packages upgraded, 55 newly installed, 0 to remove and 0 not upgraded. Need to get 29.1 MB of archives. After unpacking 114 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 liblocale-gettext-perl amd64 1.07-5 [15.4 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 openssl amd64 3.0.8-1 [1407 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 ca-certificates all 20230311 [153 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 rubygems-integration all 1.18 [6704 B] Get: 15 http://deb.debian.org/debian bookworm/main amd64 rake all 13.0.6-3 [83.9 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 ruby-net-telnet all 0.2.0-1 [13.1 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 ruby-webrick all 1.8.1-1 [51.4 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 ruby-xmlrpc all 0.3.2-2 [24.4 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libruby amd64 1:3.1 [4972 B] Get: 20 http://deb.debian.org/debian bookworm/main amd64 ruby-sdbm amd64 1.0.0-5+b1 [15.4 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libncurses6 amd64 6.4-2 [103 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libruby3.1 amd64 3.1.2-7 [5401 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 ruby3.1 amd64 3.1.2-7 [663 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 ruby-rubygems all 3.3.15-2 [293 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 ruby amd64 1:3.1 [5868 B] Get: 29 http://deb.debian.org/debian bookworm/main amd64 ruby-asciidoctor all 2.0.18-2 [211 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 asciidoctor all 2.0.18-2 [86.6 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 d-shlibs all 0.104 [18.6 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 42 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 44 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 help2man amd64 1.49.3 [198 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 libbz2-dev amd64 1.0.8-5+b1 [30.9 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libsimde-dev all 0.7.4~rc2-2 [377 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Fetched 29.1 MB in 1s (23.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-5_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package openssl. 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Setting up d-shlibs (0.104) ... Setting up autoconf (2.71-3) ... Setting up ruby-webrick (1.8.1-1) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up openssl (3.0.8-1) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up ruby-xmlrpc (0.3.2-2) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up libbz2-dev:amd64 (1.0.8-5+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up libtool (2.4.7-5) ... Setting up libedit2:amd64 (3.1-20221030-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up rubygems-integration (1.18) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.11.4) ... Setting up rake (13.0.6-3) ... Setting up libruby:amd64 (1:3.1) ... Setting up ruby-sdbm:amd64 (1.0.0-5+b1) ... Setting up libruby3.1:amd64 (3.1.2-7) ... Setting up ruby3.1 (3.1.2-7) ... Setting up ruby (1:3.1) ... Setting up ruby-asciidoctor (2.0.18-2) ... Setting up asciidoctor (2.0.18-2) ... Setting up ruby-rubygems (3.3.15-2) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/kmc-3.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kmc_3.2.1+dfsg-1_source.changes dpkg-buildpackage: info: source package kmc dpkg-buildpackage: info: source version 3.2.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/kmc-3.2.1+dfsg' rm -rf /build/kmc-3.2.1+dfsg/debian/man_src/*.html /build/kmc-3.2.1+dfsg/debian/man_src/*.? rm -rf /build/kmc-3.2.1+dfsg/debian/man dh_auto_clean -- make -j15 clean make[2]: Entering directory '/build/kmc-3.2.1+dfsg' rm -f kmc_core/*.o rm -f kmc_api/*.o rm -f kmc_dump/*.o rm -f kmc_tools/*.o rm -f py_kmc_api/*.o rm -f py_kmc_api/*.so rm -rf bin rm -rf include rm -f libkmc.a make[2]: Leaving directory '/build/kmc-3.2.1+dfsg' make[1]: Leaving directory '/build/kmc-3.2.1+dfsg' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/kmc.substvars debian/libkmc-dev.substvars debian/files rm -fr -- debian/kmc/ debian/tmp/ debian/libkmc-dev/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/kmc-3.2.1+dfsg' dh_auto_build -- SIMD=1 make -j15 "INSTALL=install --strip-program=true" SIMD=1 make[2]: Entering directory '/build/kmc-3.2.1+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_CLI/kmc.cpp -o kmc_CLI/kmc.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/mem_disk_file.cpp -o kmc_core/mem_disk_file.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/rev_byte.cpp -o kmc_core/rev_byte.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/bkb_writer.cpp -o kmc_core/bkb_writer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/cpu_info.cpp -o kmc_core/cpu_info.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/bkb_reader.cpp -o kmc_core/bkb_reader.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/fastq_reader.cpp -o kmc_core/fastq_reader.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/timer.cpp -o kmc_core/timer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/develop.cpp -o kmc_core/develop.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/kb_completer.cpp -o kmc_core/kb_completer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/kb_storer.cpp -o kmc_core/kb_storer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/kmer.cpp -o kmc_core/kmer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/splitter.cpp -o kmc_core/splitter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/kb_collector.cpp -o kmc_core/kb_collector.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/kmc_runner.cpp -o kmc_core/kmc_runner.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -msse2 -c kmc_core/raduls_sse2.cpp -o kmc_core/raduls_sse2.o In file included from kmc_core/raduls_sse2.cpp:20: kmc_core/raduls_impl.h:767:2: warning: #warning "building raduls radix sort for sse2" [-Wcpp] 767 | #warning "building raduls radix sort for sse2" | ^~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -msse4.1 -c kmc_core/raduls_sse41.cpp -o kmc_core/raduls_sse41.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -mavx2 -c kmc_core/raduls_avx2.cpp -o kmc_core/raduls_avx2.o In file included from kmc_core/raduls_sse41.cpp:17: kmc_core/raduls_impl.h:763:2: warning: #warning "building raduls radix sort for sse4.1" [-Wcpp] 763 | #warning "building raduls radix sort for sse4.1" | ^~~~~~~ In file included from kmc_core/raduls_avx2.cpp:11: kmc_core/raduls_impl.h:757:2: warning: #warning "building raduls radix sort for avx2" [-Wcpp] 757 | #warning "building raduls radix sort for avx2" | ^~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -mavx -c kmc_core/raduls_avx.cpp -o kmc_core/raduls_avx.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_api/mmer.cpp -o kmc_api/mmer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_api/kmc_file.cpp -o kmc_api/kmc_file.o In file included from kmc_core/raduls_avx.cpp:14: kmc_core/raduls_impl.h:760:2: warning: #warning "building raduls radix sort for avx" [-Wcpp] 760 | #warning "building raduls radix sort for avx" | ^~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_api/kmer_api.cpp -o kmc_api/kmer_api.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_core/kff_writer.cpp -o kmc_core/kff_writer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_dump/nc_utils.cpp -o kmc_dump/nc_utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_dump/kmc_dump.cpp -o kmc_dump/kmc_dump.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/kmer_file_header.cpp -o kmc_tools/kmer_file_header.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/kmc_tools.cpp -o kmc_tools/kmc_tools.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/nc_utils.cpp -o kmc_tools/nc_utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/parameters_parser.cpp -o kmc_tools/parameters_parser.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/parser.cpp -o kmc_tools/parser.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/tokenizer.cpp -o kmc_tools/tokenizer.o kmc_tools/kmer_file_header.cpp: In member function 'bool CKmerFileHeader::is_kff_file(std::string&)': kmc_tools/kmer_file_header.cpp:117:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 117 | fread(marker_start, 1, 3, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kmer_file_header.cpp:120:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 120 | fread(marker_end, 1, 3, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/fastq_filter.cpp -o kmc_tools/fastq_filter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/fastq_reader.cpp -o kmc_tools/fastq_reader.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/fastq_writer.cpp -o kmc_tools/fastq_writer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/percent_progress.cpp -o kmc_tools/percent_progress.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/kmc-3.2.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -c kmc_tools/kff_info_reader.cpp -o kmc_tools/kff_info_reader.o ar rcs libkmc.a kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o ranlib libkmc.a mkdir -p bin g++ -o bin/kmc_dump kmc_dump/nc_utils.o kmc_dump/kmc_dump.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o -Wl,-z,relro -Wl,-z,now -lm -O3 -lpthread -std=c++11 -lz -lbz2 kmc_tools/kff_info_reader.cpp: In constructor 'CKFFInfoReader::CKFFInfoReader(const std::string&)': kmc_tools/kff_info_reader.cpp:34:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 34 | fread(marker, 1, 3, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:39:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | fread(marker, 1, 3, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:45:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 45 | fread(footer_size_str, 1, 12, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:54:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 54 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:61:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 61 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:67:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 67 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:76:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 76 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:89:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 89 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:92:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 92 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:96:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 96 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:99:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 99 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:105:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 105 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:111:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 111 | fread(tmp.data(), 1, sizeof(free_size), file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:116:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 116 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:136:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:141:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 141 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:150:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 150 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:154:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:161:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 161 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:173:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 173 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:182:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 182 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadVariableSection()': kmc_tools/kff_info_reader.cpp:207:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 207 | fread(tmp.data(), 1, sizeof(uint64_t), file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:214:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 214 | fread(tmp.data(), 1, sizeof(uint64_t), file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadRawSection()': kmc_tools/kff_info_reader.cpp:253:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 253 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadMinimizerSection()': kmc_tools/kff_info_reader.cpp:288:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 288 | fread(data_section.minimizer.data(), 1, minimizer_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:290:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 290 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from kmc_tools/db_reader_factory.h:8, from kmc_tools/expression_node.h:19, from kmc_tools/parser.h:14, from kmc_tools/kmc_tools.cpp:17: kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 8]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from kmc_tools/kmc_tools.cpp:16: kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 8]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 7]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 7]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 6]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 6]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 5]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 5]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 4]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 4]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 3]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 3]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 2]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 2]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 1]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 1]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from kmc_core/params.h:17, from kmc_core/kmc.h:15, from kmc_core/kmc_runner.cpp:12: kmc_core/s_mapper.h: In member function 'void CSignatureMapper::InitKMC(const std::string&)': kmc_core/s_mapper.h:62:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 62 | fread(&kmc_version, sizeof(uint32), 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_core/s_mapper.h:72:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 72 | fread(&header_offset, sizeof(uint32_t), 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_core/s_mapper.h:76:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 76 | fread(&lut_prefix_len, sizeof(uint32_t), 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_core/s_mapper.h:77:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 77 | fread(&sig_len, sizeof(uint32_t), 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_core/s_mapper.h:106:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 106 | fread(raw, 1, 4, file); | ~~~~~^~~~~~~~~~~~~~~~~ mkdir -p bin g++ -o bin/kmc_tools kmc_tools/kmer_file_header.o kmc_tools/kmc_tools.o kmc_tools/nc_utils.o kmc_tools/parameters_parser.o kmc_tools/parser.o kmc_tools/tokenizer.o kmc_tools/fastq_filter.o kmc_tools/fastq_reader.o kmc_tools/fastq_writer.o kmc_tools/percent_progress.o kmc_tools/kff_info_reader.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o kmc_core/kff_writer.o -Wl,-z,relro -Wl,-z,now -lm -O3 -lpthread -std=c++11 -lz -lbz2 mkdir -p include cp kmc_core/kmc_runner.h include/kmc_runner.h mkdir -p bin ar rcs bin/libkmc_core.a kmc_core/mem_disk_file.o kmc_core/rev_byte.o kmc_core/bkb_writer.o kmc_core/cpu_info.o kmc_core/bkb_reader.o kmc_core/fastq_reader.o kmc_core/timer.o kmc_core/develop.o kmc_core/kb_completer.o kmc_core/kb_storer.o kmc_core/kmer.o kmc_core/splitter.o kmc_core/kb_collector.o kmc_core/kmc_runner.o kmc_core/raduls_sse2.o kmc_core/raduls_sse41.o kmc_core/raduls_avx2.o kmc_core/raduls_avx.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o kmc_core/kff_writer.o mkdir -p bin g++ -o bin/kmc kmc_CLI/kmc.o bin/libkmc_core.a -Wl,-z,relro -Wl,-z,now -lm -O3 -lpthread -std=c++11 -lz -lbz2 make[2]: Leaving directory '/build/kmc-3.2.1+dfsg' make[1]: Leaving directory '/build/kmc-3.2.1+dfsg' dh_auto_test rm -fr -- /tmp/dh-xdg-rundir-oOy1tNY6 create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/kmc.substvars debian/libkmc-dev.substvars rm -fr -- debian/.debhelper/generated/kmc/ debian/kmc/ debian/tmp/ debian/.debhelper/generated/libkmc-dev/ debian/libkmc-dev/ dh_auto_install install -m0755 -d /build/kmc-3.2.1\+dfsg/debian/tmp dh_install install -m0755 -d debian/kmc/usr/bin cp --reflink=auto -a ./bin/kmc ./bin/kmc_dump ./bin/kmc_tools debian/kmc/usr/bin/ install -m0755 -d debian/libkmc-dev/usr/include/kmc cp --reflink=auto -a ./kmc_api/kmc_file.h ./kmc_api/kmer_api.h ./kmc_api/kmer_defs.h ./kmc_api/mmer.h debian/libkmc-dev/usr/include/kmc/ install -m0755 -d debian/libkmc-dev/usr/lib/x86_64-linux-gnu cp --reflink=auto -a ./bin/libkmc_core.a ./libkmc.a debian/libkmc-dev/usr/lib/x86_64-linux-gnu/ dh_installdocs install -m0755 -d debian/kmc/usr/share/doc/kmc install -p -m0644 debian/TODO debian/kmc/usr/share/doc/kmc/TODO.Debian install -p -m0644 debian/copyright debian/kmc/usr/share/doc/kmc/copyright install -m0755 -d debian/libkmc-dev/usr/share/doc/libkmc-dev install -p -m0644 debian/copyright debian/libkmc-dev/usr/share/doc/libkmc-dev/copyright dh_installchangelogs install -m0755 -d debian/libkmc-dev/usr/share/doc/libkmc-dev install -p -m0644 debian/.debhelper/generated/libkmc-dev/dh_installchangelogs.dch.trimmed debian/libkmc-dev/usr/share/doc/libkmc-dev/changelog.Debian install -m0755 -d debian/kmc/usr/share/doc/kmc install -p -m0644 debian/.debhelper/generated/kmc/dh_installchangelogs.dch.trimmed debian/kmc/usr/share/doc/kmc/changelog.Debian rm -f debian/kmc.debhelper.log debian/libkmc-dev.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/kmc-3.2.1+dfsg' mkdir -p /build/kmc-3.2.1+dfsg/debian/man /build/kmc-3.2.1+dfsg/debian/usage_to_man Creating manpages Manpage creation complete Manpage creation complete asciidoctor -a docdate='' -b manpage /build/kmc-3.2.1+dfsg/debian/man_src/*.adoc cp /build/kmc-3.2.1+dfsg/debian/man_src/*.? /build/kmc-3.2.1+dfsg/debian/man dh_installman -- install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./man/kmc.1 debian/kmc/usr/share/man/man1/kmc.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./man/kmc_dump.1 debian/kmc/usr/share/man/man1/kmc_dump.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-compact.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-complex.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-dump.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-filter.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-histogram.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-kmers_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-sort.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-union.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools.1 debian/kmc/usr/share/man/man1/kmc_tools.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_dump.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-compact.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-complex.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-dump.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-filter.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-union.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools.1 mv debian/kmc/usr/share/man/man1/kmc_tools-dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-dump.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-dump.1 mv debian/kmc/usr/share/man/man1/kmc_dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_dump.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_dump.1 mv debian/kmc/usr/share/man/man1/kmc_tools-compact.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-compact.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-compact.1 mv debian/kmc/usr/share/man/man1/kmc.1.dh-new debian/kmc/usr/share/man/man1/kmc.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc.1 mv debian/kmc/usr/share/man/man1/kmc_tools-intersect.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 mv debian/kmc/usr/share/man/man1/kmc_tools-sort.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-sort.1 mv debian/kmc/usr/share/man/man1/kmc_tools-histogram.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 mv debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 mv debian/kmc/usr/share/man/man1/kmc_tools-complex.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-complex.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-complex.1 mv debian/kmc/usr/share/man/man1/kmc_tools-union.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-union.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-union.1 mv debian/kmc/usr/share/man/man1/kmc_tools-filter.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-filter.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-filter.1 mv debian/kmc/usr/share/man/man1/kmc_tools.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools.1 mv debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 make[1]: Leaving directory '/build/kmc-3.2.1+dfsg' dh_perl dh_link dh_strip_nondeterminism dh_compress cd debian/kmc cd debian/libkmc-dev chmod a-x usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 chmod a-x usr/share/doc/libkmc-dev/changelog.Debian gzip -9nf usr/share/doc/libkmc-dev/changelog.Debian gzip -9nf usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 cd '/build/kmc-3.2.1+dfsg' cd '/build/kmc-3.2.1+dfsg' dh_fixperms find debian/kmc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libkmc-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libkmc-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libkmc-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc/usr/share/doc -type f -a -true -a ! -regex 'debian/kmc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/kmc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libkmc-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/kmc/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_dwz -a install -m0755 -d debian/kmc/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/kmc/usr/lib/debug/.dwz/x86_64-linux-gnu/kmc.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/kmc.debug -- debian/kmc/usr/bin/kmc debian/kmc/usr/bin/kmc_dump debian/kmc/usr/bin/kmc_tools objcopy --compress-debug-sections debian/kmc/usr/lib/debug/.dwz/x86_64-linux-gnu/kmc.debug chmod 0644 -- debian/kmc/usr/lib/debug/.dwz/x86_64-linux-gnu/kmc.debug dh_strip -a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libkmc-dev/usr/lib/x86_64-linux-gnu/libkmc.a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libkmc-dev/usr/lib/x86_64-linux-gnu/libkmc_core.a install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/3d objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/3d/4dfb6c7a0cd684c9df4f55f1dc79d7432b3f02.debug chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/3d/4dfb6c7a0cd684c9df4f55f1dc79d7432b3f02.debug strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/3d/4dfb6c7a0cd684c9df4f55f1dc79d7432b3f02.debug debian/kmc/usr/bin/kmc install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/ee objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc_tools debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/ee/52c18e87d57dfe92ee0f4a9155cff8f6e24ba4.debug chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/ee/52c18e87d57dfe92ee0f4a9155cff8f6e24ba4.debug strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc_tools objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/ee/52c18e87d57dfe92ee0f4a9155cff8f6e24ba4.debug debian/kmc/usr/bin/kmc_tools install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/54 objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc_dump debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/54/8d4ebd8d7582f15edf2f2a0c33b59769ead6d8.debug chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/54/8d4ebd8d7582f15edf2f2a0c33b59769ead6d8.debug strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc_dump objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/54/8d4ebd8d7582f15edf2f2a0c33b59769ead6d8.debug debian/kmc/usr/bin/kmc_dump install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/kmc/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/kmc/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/kmc/usr/lib/debug install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/share/doc ln -s kmc debian/.debhelper/kmc/dbgsym-root/usr/share/doc/kmc-dbgsym install -m0755 -d debian/.debhelper/kmc dh_makeshlibs -a rm -f debian/kmc/DEBIAN/shlibs rm -f debian/libkmc-dev/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/kmc/DEBIAN dpkg-shlibdeps -Tdebian/kmc.substvars debian/kmc/usr/bin/kmc debian/kmc/usr/bin/kmc_tools debian/kmc/usr/bin/kmc_dump dh_installdeb install -m0755 -d debian/kmc/DEBIAN install -m0755 -d debian/libkmc-dev/DEBIAN rm -f debian/kmc.debhelper.log debian/libkmc-dev.debhelper.log debian/rules override_dh_gencontrol make[1]: Entering directory '/build/kmc-3.2.1+dfsg' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.7.4~rc2-2), " install -m0755 -d debian/kmc/DEBIAN echo misc:Depends= >> debian/kmc.substvars echo misc:Pre-Depends= >> debian/kmc.substvars install -m0755 -d debian/.debhelper/kmc/dbgsym-root/DEBIAN dpkg-gencontrol -pkmc -ldebian/changelog -Tdebian/kmc.substvars -Pdebian/.debhelper/kmc/dbgsym-root "-Vsimde:Built-Using=simde (= 0.7.4~rc2-2), " -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=kmc-dbgsym "-DDepends=kmc (= \${binary:Version})" "-DDescription=debug symbols for kmc" "-DBuild-Ids=3d4dfb6c7a0cd684c9df4f55f1dc79d7432b3f02 548d4ebd8d7582f15edf2f2a0c33b59769ead6d8 ee52c18e87d57dfe92ee0f4a9155cff8f6e24ba4" -DSection=debug -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/libkmc-dev/DEBIAN echo misc:Depends= >> debian/libkmc-dev.substvars echo misc:Pre-Depends= >> debian/libkmc-dev.substvars dpkg-gencontrol -plibkmc-dev -ldebian/changelog -Tdebian/libkmc-dev.substvars -Pdebian/libkmc-dev "-Vsimde:Built-Using=simde (= 0.7.4~rc2-2), " dpkg-gencontrol: warning: Depends field of package libkmc-dev: substitution variable ${shlibs:Depends} used, but is not defined chmod 0644 -- debian/libkmc-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/control dpkg-gencontrol -pkmc -ldebian/changelog -Tdebian/kmc.substvars -Pdebian/kmc "-Vsimde:Built-Using=simde (= 0.7.4~rc2-2), " chmod 0644 -- debian/kmc/DEBIAN/control make[1]: Leaving directory '/build/kmc-3.2.1+dfsg' dh_md5sums install -m0755 -d debian/kmc/DEBIAN install -m0755 -d debian/libkmc-dev/DEBIAN cd debian/kmc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libkmc-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/kmc/DEBIAN/md5sums install -m0755 -d debian/.debhelper/kmc/dbgsym-root/DEBIAN cd debian/.debhelper/kmc/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libkmc-dev/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/kmc .. dpkg-deb --root-owner-group --build debian/.debhelper/kmc/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libkmc-dev .. dpkg-deb: building package 'libkmc-dev' in '../libkmc-dev_3.2.1+dfsg-1_amd64.deb'. dpkg-deb: building package 'kmc-dbgsym' in '../kmc-dbgsym_3.2.1+dfsg-1_amd64.deb'. dpkg-deb: building package 'kmc' in '../kmc_3.2.1+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../kmc_3.2.1+dfsg-1_amd64.buildinfo dpkg-genchanges --build=binary -O../kmc_3.2.1+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2117363 and its subdirectories I: Current time: Sun Apr 30 13:09:15 -12 2023 I: pbuilder-time-stamp: 1682903355 Mon May 1 01:09:15 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Mon May 1 01:09:15 UTC 2023 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Mon May 1 01:16:34 UTC 2023 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Mon May 1 01:16:34 UTC 2023 I: kmc_3.2.1+dfsg-1_amd64.changes: Format: 1.8 Date: Sun, 16 Jan 2022 15:24:16 +0100 Source: kmc Binary: kmc kmc-dbgsym libkmc-dev Architecture: amd64 Version: 3.2.1+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: kmc - count kmers in genomic sequences libkmc-dev - library to access KMC k-mer count files Changes: kmc (3.2.1+dfsg-1) unstable; urgency=medium . * New upstream version * Add missing build dependency on dh addon. * Drop transition for old debug package migration. * d/copyright: update Files-Excluded pattern list * Refresh all patches following reorganisation of upstream source code. * Delete newish_gcc_build_fix.patch: applied upstream. * d/t/build-lib: adjust autopkgtest to limitations imposed by upstream: no less than 2GiB of memory per command and no more than 128 threads. * d/control,d/libkmc-dev: don't depend on dh-exec thanks to compat 13. Checksums-Sha1: 473338abfad60ec626230351cc48d5fb2e7c611f 22627932 kmc-dbgsym_3.2.1+dfsg-1_amd64.deb fbf9dd2ffec70dc154abd168c3e519e1fe0ae2fc 6465 kmc_3.2.1+dfsg-1_amd64.buildinfo 49714d26a465cd23d8371b2c1d3136ba7adbeb3e 996736 kmc_3.2.1+dfsg-1_amd64.deb 4586d913ea74d5c334711d2073039993b557a969 728068 libkmc-dev_3.2.1+dfsg-1_amd64.deb Checksums-Sha256: c46fe5a8e7a6e227d6934ba4f3bd449cf0aa714d38baf0dbaa4dc89744ef74c4 22627932 kmc-dbgsym_3.2.1+dfsg-1_amd64.deb 49b1beb2ae6058301487903cf321baa90443dc04f534b4e70b318161c16b23aa 6465 kmc_3.2.1+dfsg-1_amd64.buildinfo 210743068c2813990486314b5bd3425491df6a6bd5be8f359108f8b5307a87b0 996736 kmc_3.2.1+dfsg-1_amd64.deb dd5fecdb1de9467dc54a8a46be49ba1efeac16be312f37b6cf02ad6e60d03293 728068 libkmc-dev_3.2.1+dfsg-1_amd64.deb Files: 36d78f3563a6c077042c1b068c5b7683 22627932 debug optional kmc-dbgsym_3.2.1+dfsg-1_amd64.deb 32153a3c423086ead114dab6d4163382 6465 science optional kmc_3.2.1+dfsg-1_amd64.buildinfo 11027c0d8fec4ebedbe927331a481d20 996736 science optional kmc_3.2.1+dfsg-1_amd64.deb 9b1a45e0aa459224b511b71141b0e84b 728068 libdevel optional libkmc-dev_3.2.1+dfsg-1_amd64.deb Mon May 1 01:16:36 UTC 2023 I: diffoscope 241 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.dC9J1U4b/kmc_3.2.1+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.dC9J1U4b/kmc_3.2.1+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.dC9J1U4b/kmc_3.2.1+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.dC9J1U4b/b1/kmc_3.2.1+dfsg-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.dC9J1U4b/b2/kmc_3.2.1+dfsg-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 1.515s) 1.514s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.321s) 0.321s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Mon May 1 01:16:38 UTC 2023 I: diffoscope 241 found no differences in the changes files, and a .buildinfo file also exists. Mon May 1 01:16:38 UTC 2023 I: kmc from bookworm built successfully and reproducibly on amd64. Mon May 1 01:16:39 UTC 2023 I: Submitting .buildinfo files to external archives: Mon May 1 01:16:39 UTC 2023 I: Submitting 8.0K b1/kmc_3.2.1+dfsg-1_amd64.buildinfo.asc Mon May 1 01:16:41 UTC 2023 I: Submitting 8.0K b2/kmc_3.2.1+dfsg-1_amd64.buildinfo.asc Mon May 1 01:16:42 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon May 1 01:16:42 UTC 2023 I: Done submitting .buildinfo files. Mon May 1 01:16:42 UTC 2023 I: Removing signed kmc_3.2.1+dfsg-1_amd64.buildinfo.asc files: removed './b1/kmc_3.2.1+dfsg-1_amd64.buildinfo.asc' removed './b2/kmc_3.2.1+dfsg-1_amd64.buildinfo.asc'