Sat Apr 22 03:56:24 UTC 2023 I: starting to build freesasa/bookworm/amd64 on jenkins on '2023-04-22 03:56' Sat Apr 22 03:56:24 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_19/10244/console.log Sat Apr 22 03:56:24 UTC 2023 I: Downloading source for bookworm/freesasa=2.1.2-1 --2023-04-22 03:56:24-- http://cdn-fastly.deb.debian.org/debian/pool/main/f/freesasa/freesasa_2.1.2-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2016 (2.0K) [text/prs.lines.tag] Saving to: ‘freesasa_2.1.2-1.dsc’ 0K . 100% 106M=0s 2023-04-22 03:56:24 (106 MB/s) - ‘freesasa_2.1.2-1.dsc’ saved [2016/2016] Sat Apr 22 03:56:24 UTC 2023 I: freesasa_2.1.2-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: freesasa Binary: freesasa Architecture: any Version: 2.1.2-1 Maintainer: Debichem Team Uploaders: Andrius Merkys , Homepage: https://freesasa.github.io Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/debichem-team/freesasa Vcs-Git: https://salsa.debian.org/debichem-team/freesasa.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), gemmi-dev, libjson-c-dev, libxml2-dev, pkg-config, tao-pegtl-dev Package-List: freesasa deb science optional arch=any Checksums-Sha1: 5832e4bb0d2101d9e6d360b2c78bf3cb5bab5cfb 3281121 freesasa_2.1.2.orig.tar.gz 72b3fbaf6235a428d9ae74c3951ba07be4ef59e4 3240 freesasa_2.1.2-1.debian.tar.xz Checksums-Sha256: 98c3ebd8877daf1a886ae4b7f124b81dcb771dea7a6a864763f3e32043bfe901 3281121 freesasa_2.1.2.orig.tar.gz e77e4786cff9362014d4093abdf99a39835b56d4988b48a70d5230995c3bcd25 3240 freesasa_2.1.2-1.debian.tar.xz Files: 620ec39bf204863caedfca580d4c79f3 3281121 freesasa_2.1.2.orig.tar.gz f9a1513fb6a6dd417284cc97412bf688 3240 freesasa_2.1.2-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmL/IcoSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHY38QAIhcdnom9kIG7TSutJF/IzStwxLZzmIn 2jtcWp6IXKGBRPGTVuGqfbnZdigD1pGlg2dEkFpQmQg7iqkfuPLB/QU6k9Q4JXMf 3g/iLJYkRBxvcECzyFhnMxqpILNu7lrBFFo4QQy8+HZhzkpy0r9d8msr8uZsK8AV wGW2I28CVW3GfDylkuFB3jKSmbOlfSNCIeyEHuOtaBFTDWc4E9NGtED4+KWaJKH8 HNGUAAAVKEGMprhFTYLKxjpXO3KKhr62lJ2ERb3YKBE+Rj+XpbJnU+o754zwKBxe 6SBAecpGZdohBK9qqubi1n0AmjKYzJjPsAazwjg/xiXtR23CdGuVU9KdelfDfP0e LF5jRvUHlZolLGZpAoYERrrQ//yoMBoXfWnuzQbZ2GoJKVgNRuIXKNesavHjOzvJ gLAwSBFRJKtjQUicNxesM6dnr8PseSqJ8R/UltHrUzaTLeVjw7qlf5dnu0CHN0HB b/nlyOiH5Emq2wk0Issth3FNMbhO9RZ2nNYeYlQSh7QPLz4jRl2JMxjm0zwZl98s b6XIxLw/gv3udmiEvoQESaT0hqiBL0pXlKm1i0BUCxvf0aLblrSDxydxxOsj7NqY dZ1sBKYdi+ft6sNtWLY4+Q2sFefF8CFVb20ZwpTBCg3hyzIIEUbDuZ9Hh2kodNDV h5AQGR8Li8PQ =IQhx -----END PGP SIGNATURE----- Sat Apr 22 03:56:24 UTC 2023 I: Checking whether the package is not for us Sat Apr 22 03:56:24 UTC 2023 I: Starting 1st build on remote node ionos1-amd64.debian.net. Sat Apr 22 03:56:24 UTC 2023 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Sat Apr 22 03:58:57 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Apr 21 15:56:26 -12 2023 I: pbuilder-time-stamp: 1682135786 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [freesasa_2.1.2-1.dsc] I: copying [./freesasa_2.1.2.orig.tar.gz] I: copying [./freesasa_2.1.2-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Aug 18 17:38:18 2022 -12 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./freesasa_2.1.2-1.dsc: no acceptable signature found dpkg-source: info: extracting freesasa in freesasa-2.1.2 dpkg-source: info: unpacking freesasa_2.1.2.orig.tar.gz dpkg-source: info: unpacking freesasa_2.1.2-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no-gnu++-setting.patch dpkg-source: info: applying fix-manpage.patch dpkg-source: info: applying no-lc++.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1373731/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='af6bd1699fb741528040a0ce2891c73f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1373731' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.FIcxiKWH/pbuilderrc_6lTj --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.FIcxiKWH/b1 --logfile b1/build.log freesasa_2.1.2-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Feb 12 08:05 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Feb 12 08:05 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 04:31 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar -rwxr-xr-x 1 root root 14520 Nov 2 04:31 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/1373731/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), gemmi-dev, libjson-c-dev, libxml2-dev, pkg-config, tao-pegtl-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on gemmi-dev; however: Package gemmi-dev is not installed. pbuilder-satisfydepends-dummy depends on libjson-c-dev; however: Package libjson-c-dev is not installed. pbuilder-satisfydepends-dummy depends on libxml2-dev; however: Package libxml2-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on tao-pegtl-dev; however: Package tao-pegtl-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gemmi-dev{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu-dev{a} libicu72{a} libjson-c-dev{a} libjson-c5{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libpkgconf3{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} libxml2-dev{a} m4{a} man-db{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} tao-pegtl-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 41 newly installed, 0 to remove and 0 not upgraded. Need to get 30.8 MB of archives. After unpacking 129 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b3 [687 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 gemmi-dev amd64 0.5.7+ds-2+b1 [404 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 icu-devtools amd64 72.1-3 [206 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libicu-dev amd64 72.1-3 [10.3 MB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 libjson-c5 amd64 0.16-2 [44.1 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 libjson-c-dev amd64 0.16-2 [71.3 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 libxml2-dev amd64 2.9.14+dfsg-1.1+b3 [782 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 pkgconf amd64 1.8.1-1 [25.9 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 pkg-config amd64 1.8.1-1 [13.7 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 tao-pegtl-dev all 3.2.7-1 [69.4 kB] Fetched 30.8 MB in 1s (50.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../02-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_amd64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... 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Processing triggers for libc-bin (2.36-9) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/freesasa-2.1.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../freesasa_2.1.2-1_source.changes dpkg-buildpackage: info: source package freesasa dpkg-buildpackage: info: source version 2.1.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:42: warning: The macro `AC_PROG_CC_C99' is obsolete. configure.ac:42: You should run autoupdate. ./lib/autoconf/c.m4:1659: AC_PROG_CC_C99 is expanded from... configure.ac:42: the top level configure.ac:123: warning: AC_PROG_LEX without either yywrap or noyywrap is obsolete ./lib/autoconf/programs.m4:716: _AC_PROG_LEX is expanded from... ./lib/autoconf/programs.m4:709: AC_PROG_LEX is expanded from... configure.ac:123: the top level configure.ac:16: installing './compile' configure.ac:46: installing './config.guess' configure.ac:46: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking for ranlib... ranlib checking for sqrt in -lm... yes checking for dlsym in -ldl... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking for inttypes.h... (cached) yes checking for libintl.h... yes checking for malloc.h... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for dlfcn.h... yes checking for inline... inline checking for size_t... (cached) yes checking for C/C++ restrict keyword... __restrict__ checking for int16_t... yes checking for int32_t... yes checking for int8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for uint8_t... yes checking for inline... (cached) inline checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for memset... yes checking for mkdir... yes checking for sqrt... yes checking for strchr... yes checking for strdup... yes checking for strerror... yes checking for strncasecmp... yes checking for getopt_long... yes checking for getline... yes checking whether g++ supports C++14 features with -std=gnu++14... yes checking for pthread_create in -lpthread... yes checking for pthread.h... yes checking for xmllint... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for libxml-2.0... yes checking for json_object_get in -ljson-c... yes checking for json-c/json_object.h... yes checking for jsonlint... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating doc/Doxyfile config.status: creating doc/man/freesasa.1 config.status: creating tests/Makefile config.status: creating share/Makefile config.status: creating tests/test-cli config.status: creating config.h config.status: executing depfiles commands dh_auto_build make -j15 make[1]: Entering directory '/build/freesasa-2.1.2' make all-recursive make[2]: Entering directory '/build/freesasa-2.1.2' Making all in src make[3]: Entering directory '/build/freesasa-2.1.2/src' g++ -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/freesasa-2.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -c -o main.o main.cc g++ -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/freesasa-2.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cif.o cif.cc gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/freesasa-2.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c -o classifier.o classifier.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/freesasa-2.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c -o classifier_protor.o classifier_protor.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/freesasa-2.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c -o classifier_oons.o classifier_oons.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/freesasa-2.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c -o classifier_naccess.o classifier_naccess.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/freesasa-2.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c -o coord.o coord.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/freesasa-2.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c -o pdb.o pdb.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/freesasa-2.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c -o log.o log.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/freesasa-2.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c -o sasa_lr.o sasa_lr.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/freesasa-2.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c -o sasa_sr.o sasa_sr.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/freesasa-2.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c -o structure.o structure.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/freesasa-2.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c -o node.o node.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/freesasa-2.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c -o freesasa.o freesasa.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/freesasa-2.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c -o nb.o nb.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/freesasa-2.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c -o util.o util.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/freesasa-2.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c -o rsa.o rsa.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/freesasa-2.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c -o selection.o selection.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/freesasa-2.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c -o lexer.o lexer.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/freesasa-2.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c -o parser.o parser.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/freesasa-2.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c -o json.o json.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/freesasa-2.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c -o xml.o xml.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/freesasa-2.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -c -o example.o example.c rm -f libfreesasa.a ar cru libfreesasa.a classifier.o classifier_protor.o classifier_oons.o classifier_naccess.o coord.o pdb.o log.o sasa_lr.o sasa_sr.o structure.o node.o freesasa.o nb.o util.o rsa.o selection.o lexer.o parser.o json.o xml.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libfreesasa.a gcc -I/usr/include/libxml2 -g -O2 -ffile-prefix-map=/build/freesasa-2.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wl,-z,relro -Wl,-z,now -o example example.o libfreesasa.a -ljson-c -lxml2 -lpthread -ldl -lm g++ -g -O2 -ffile-prefix-map=/build/freesasa-2.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o freesasa main.o cif.o libfreesasa.a -ljson-c -lxml2 -lpthread -ldl -lm make[3]: Leaving directory '/build/freesasa-2.1.2/src' Making all in doc make[3]: Entering directory '/build/freesasa-2.1.2/doc' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/freesasa-2.1.2/doc' Making all in tests make[3]: Entering directory '/build/freesasa-2.1.2/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/freesasa-2.1.2/tests' Making all in share make[3]: Entering directory '/build/freesasa-2.1.2/share' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/freesasa-2.1.2/share' make[3]: Entering directory '/build/freesasa-2.1.2' make[3]: Leaving directory '/build/freesasa-2.1.2' make[2]: Leaving directory '/build/freesasa-2.1.2' make[1]: Leaving directory '/build/freesasa-2.1.2' dh_auto_test make -j15 check "TESTSUITEFLAGS=-j15 --verbose" VERBOSE=1 make[1]: Entering directory '/build/freesasa-2.1.2' Making check in src make[2]: Entering directory '/build/freesasa-2.1.2/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/freesasa-2.1.2/src' Making check in doc make[2]: Entering directory '/build/freesasa-2.1.2/doc' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/freesasa-2.1.2/doc' Making check in tests make[2]: Entering directory '/build/freesasa-2.1.2/tests' make make[3]: Entering directory '/build/freesasa-2.1.2/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/freesasa-2.1.2/tests' make check-TESTS make[3]: Entering directory '/build/freesasa-2.1.2/tests' make[4]: Entering directory '/build/freesasa-2.1.2/tests' PASS: test-cli ============================================================================ Testsuite summary for FreeSASA 2.1.2 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/build/freesasa-2.1.2/tests' make[3]: Leaving directory '/build/freesasa-2.1.2/tests' make[2]: Leaving directory '/build/freesasa-2.1.2/tests' Making check in share make[2]: Entering directory '/build/freesasa-2.1.2/share' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/freesasa-2.1.2/share' make[2]: Entering directory '/build/freesasa-2.1.2' make[2]: Leaving directory '/build/freesasa-2.1.2' make[1]: Leaving directory '/build/freesasa-2.1.2' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/freesasa/ make -j15 install DESTDIR=/build/freesasa-2.1.2/debian/freesasa AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/freesasa-2.1.2' Making install in src make[2]: Entering directory '/build/freesasa-2.1.2/src' make[3]: Entering directory '/build/freesasa-2.1.2/src' /bin/mkdir -p '/build/freesasa-2.1.2/debian/freesasa/usr/bin' /bin/mkdir -p '/build/freesasa-2.1.2/debian/freesasa/usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/freesasa-2.1.2/debian/freesasa/usr/include' /usr/bin/install -c -m 644 libfreesasa.a '/build/freesasa-2.1.2/debian/freesasa/usr/lib/x86_64-linux-gnu' /usr/bin/install -c freesasa '/build/freesasa-2.1.2/debian/freesasa/usr/bin' ( cd '/build/freesasa-2.1.2/debian/freesasa/usr/lib/x86_64-linux-gnu' && ranlib libfreesasa.a ) /usr/bin/install -c -m 644 freesasa.h '/build/freesasa-2.1.2/debian/freesasa/usr/include' make[3]: Leaving directory '/build/freesasa-2.1.2/src' make[2]: Leaving directory '/build/freesasa-2.1.2/src' Making install in doc make[2]: Entering directory '/build/freesasa-2.1.2/doc' make[3]: Entering directory '/build/freesasa-2.1.2/doc' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/freesasa-2.1.2/debian/freesasa/usr/share/man/man1' /usr/bin/install -c -m 644 man/freesasa.1 '/build/freesasa-2.1.2/debian/freesasa/usr/share/man/man1' make[3]: Leaving directory '/build/freesasa-2.1.2/doc' make[2]: Leaving directory '/build/freesasa-2.1.2/doc' Making install in tests make[2]: Entering directory '/build/freesasa-2.1.2/tests' make[3]: Entering directory '/build/freesasa-2.1.2/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/freesasa-2.1.2/tests' make[2]: Leaving directory '/build/freesasa-2.1.2/tests' Making install in share make[2]: Entering directory '/build/freesasa-2.1.2/share' make[3]: Entering directory '/build/freesasa-2.1.2/share' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/freesasa-2.1.2/debian/freesasa/usr/share/freesasa' /usr/bin/install -c -m 644 dssp.config naccess.config oons.config protor.config '/build/freesasa-2.1.2/debian/freesasa/usr/share/freesasa' make[3]: Leaving directory '/build/freesasa-2.1.2/share' make[2]: Leaving directory '/build/freesasa-2.1.2/share' make[2]: Entering directory '/build/freesasa-2.1.2' make[3]: Entering directory '/build/freesasa-2.1.2' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/freesasa-2.1.2' make[2]: Leaving directory '/build/freesasa-2.1.2' make[1]: Leaving directory '/build/freesasa-2.1.2' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'freesasa' in '../freesasa_2.1.2-1_amd64.deb'. dpkg-deb: building package 'freesasa-dbgsym' in '../freesasa-dbgsym_2.1.2-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../freesasa_2.1.2-1_amd64.buildinfo dpkg-genchanges --build=binary -O../freesasa_2.1.2-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1373731 and its subdirectories I: Current time: Fri Apr 21 15:58:56 -12 2023 I: pbuilder-time-stamp: 1682135936 Sat Apr 22 03:58:57 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Sat Apr 22 03:58:57 UTC 2023 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Sat Apr 22 04:05:07 UTC 2023 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Sat Apr 22 04:05:07 UTC 2023 I: freesasa_2.1.2-1_amd64.changes: Format: 1.8 Date: Fri, 19 Aug 2022 01:29:44 -0400 Source: freesasa Binary: freesasa freesasa-dbgsym Architecture: amd64 Version: 2.1.2-1 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Andrius Merkys Description: freesasa - Solvent Accessible Surface Area of biomolecules Changes: freesasa (2.1.2-1) unstable; urgency=medium . * New upstream version 2.1.2 Checksums-Sha1: 6852c15c879ccb226ca2d81f2b3c08f61ceab78b 1980228 freesasa-dbgsym_2.1.2-1_amd64.deb ee5750e70f3c475376344254d839c7d8e4333a97 5397 freesasa_2.1.2-1_amd64.buildinfo 064d0f4eb31dd7c0d28e715767447098cd6ac152 464476 freesasa_2.1.2-1_amd64.deb Checksums-Sha256: 723e18f7f42caa593d3d70e5adfb4cc2cea37adc8d9c599576541913d5b6dc78 1980228 freesasa-dbgsym_2.1.2-1_amd64.deb b9d0828bf011c06c23c9a4faa70b1b4bdcf0de37597e7e67f6d81bb2de7faea9 5397 freesasa_2.1.2-1_amd64.buildinfo bd36f8a15cb86c42f68b394f893dc76f762a31267827533487a3296c351ea087 464476 freesasa_2.1.2-1_amd64.deb Files: dbafe520a1ac898cd28912f52e4fd5c7 1980228 debug optional freesasa-dbgsym_2.1.2-1_amd64.deb 95f10726955eb9d133c310f7031ef4c0 5397 science optional freesasa_2.1.2-1_amd64.buildinfo 62cb314dab806b8654928ecbf1c2fc8d 464476 science optional freesasa_2.1.2-1_amd64.deb Sat Apr 22 04:05:08 UTC 2023 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.FIcxiKWH/freesasa_2.1.2-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.FIcxiKWH/freesasa_2.1.2-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.FIcxiKWH/freesasa_2.1.2-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.FIcxiKWH/b1/freesasa_2.1.2-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.FIcxiKWH/b2/freesasa_2.1.2-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 1.251s) 1.251s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.282s) 0.282s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Sat Apr 22 04:05:13 UTC 2023 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Sat Apr 22 04:05:13 UTC 2023 I: freesasa from bookworm built successfully and reproducibly on amd64. Sat Apr 22 04:05:16 UTC 2023 I: Submitting .buildinfo files to external archives: Sat Apr 22 04:05:16 UTC 2023 I: Submitting 8.0K b1/freesasa_2.1.2-1_amd64.buildinfo.asc Sat Apr 22 04:05:17 UTC 2023 I: Submitting 8.0K b2/freesasa_2.1.2-1_amd64.buildinfo.asc Sat Apr 22 04:05:18 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Apr 22 04:05:18 UTC 2023 I: Done submitting .buildinfo files. Sat Apr 22 04:05:18 UTC 2023 I: Removing signed freesasa_2.1.2-1_amd64.buildinfo.asc files: removed './b1/freesasa_2.1.2-1_amd64.buildinfo.asc' removed './b2/freesasa_2.1.2-1_amd64.buildinfo.asc'