Wed May 10 16:52:03 UTC 2023 I: starting to build epcr/bookworm/amd64 on jenkins on '2023-05-10 16:51' Wed May 10 16:52:03 UTC 2023 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_17/12804/console.log Wed May 10 16:52:03 UTC 2023 I: Downloading source for bookworm/epcr=2.3.12-1-9 --2023-05-10 16:52:03-- http://cdn-fastly.deb.debian.org/debian/pool/main/e/epcr/epcr_2.3.12-1-9.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2026 (2.0K) [text/prs.lines.tag] Saving to: ‘epcr_2.3.12-1-9.dsc’ 0K . 100% 149M=0s 2023-05-10 16:52:04 (149 MB/s) - ‘epcr_2.3.12-1-9.dsc’ saved [2026/2026] Wed May 10 16:52:04 UTC 2023 I: epcr_2.3.12-1-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: epcr Binary: ncbi-epcr Architecture: any Version: 2.3.12-1-9 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille , Charles Plessy Homepage: https://www.ncbi.nlm.nih.gov/tools/epcr/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/epcr Vcs-Git: https://salsa.debian.org/med-team/epcr.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: ncbi-epcr deb science optional arch=any Checksums-Sha1: b63d03b5bd9e25989c0da27aa56c990057636b34 76840 epcr_2.3.12-1.orig.tar.gz 1267283af28487190f002fa8152742c154b0cd0b 55888 epcr_2.3.12-1-9.debian.tar.xz Checksums-Sha256: 92613a09cbba3eab66916488063b56e2a3b50a82e5308b1731b6b90d232b8275 76840 epcr_2.3.12-1.orig.tar.gz b90159da3b91073b692a6c8040c897d77f238dcbbdbc810744d95adfa340749f 55888 epcr_2.3.12-1-9.debian.tar.xz Files: 516b111f78769af24393e61b0bf7fd80 76840 epcr_2.3.12-1.orig.tar.gz 265e43f3726fb123c05d4e41c570216a 55888 epcr_2.3.12-1-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/OjHYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEe6xAAiy5oxkk4jqpcxMMR48F17yN4fUYBLcmp u9qCZQCVm1Iu//I+96cUROfB3OPUoq6a8HzPn4khkUA0DhXHk44H8Jp/GXjVQ8gQ +OOjpfPZC4zgonP+QSJs/HoqN7Ll5gqqcNnE+yAeVnzl2EXFvlOMHcF5qex5398H VgoW1CYP6lHfhpiZ6o3heC9Kyzgffei5VcgzQ/qzil1yYpULrNVymiab1fpSG1v5 nucTSl4tDSUjMRvmsw8dSXx07WthqXFZNJM3yWt/wojFsnchbe2QCdqfk4wqhPlA TWyiUm+tCmZ/jz4+DO5ymqh/XZN7IND1prgQALLL043m26SPeYksHb/kFPlDRaV6 KGtw3ut48O4I3YKk3DhWDC+vE/Ha9bjnAzz5eRN59gU3J20IFTb/qBfGW62Nautn 93ngu57k6iRf7QxH4uSkiyuMDMlMRP05xlPsxDw7J4zns085i2fIKrfObjGOseBF 3b0TxjBKI3Mjm632XOT/+Se9zNN3o2toFL/M8jOo2gzDS653HaDjyQ0LYep67Iv6 BynbHhTDHrjxkg8p9cH91MCcrkv65ydKDhs75TSlyL/wZ3pVH7UldcnRqiwhu52M jR4aI8gT0o/Ep+7UUaVmEXM4kjHebVJVbV9SVwddMD3u8KqMifjJDjDxlm1sG1In 009Mn8RoFUY= =bhU2 -----END PGP SIGNATURE----- Wed May 10 16:52:04 UTC 2023 I: Checking whether the package is not for us Wed May 10 16:52:04 UTC 2023 I: Starting 1st build on remote node ionos1-amd64.debian.net. Wed May 10 16:52:04 UTC 2023 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Wed May 10 16:53:19 UTC 2023 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed May 10 04:52:06 -12 2023 I: pbuilder-time-stamp: 1683737526 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [epcr_2.3.12-1-9.dsc] I: copying [./epcr_2.3.12-1.orig.tar.gz] I: copying [./epcr_2.3.12-1-9.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Dec 7 08:11:34 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./epcr_2.3.12-1-9.dsc: no acceptable signature found dpkg-source: info: extracting epcr in epcr-2.3.12-1 dpkg-source: info: unpacking epcr_2.3.12-1.orig.tar.gz dpkg-source: info: unpacking epcr_2.3.12-1-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_clean_target.patch dpkg-source: info: applying fix_header_location.patch dpkg-source: info: applying ensure_build_options.patch dpkg-source: info: applying use-dpkg-buildflags.patch dpkg-source: info: applying mayhem.patch dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3737976/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='c52e44ea9a374971b4274240c75fd845' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3737976' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bCuxryPW/pbuilderrc_Z4ri --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bCuxryPW/b1 --logfile b1/build.log epcr_2.3.12-1-9.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 5.10.0-22-amd64 #1 SMP Debian 5.10.178-3 (2023-04-22) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 09:23 bash -rwxr-xr-x 3 root root 39224 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 01:20 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 22 22:02 dmesg lrwxrwxrwx 1 root root 8 Dec 19 01:33 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 01:33 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 02:43 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 02:43 fgrep -rwxr-xr-x 1 root root 85600 Mar 22 22:02 findmnt -rwsr-xr-x 1 root root 35128 Mar 22 20:35 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 02:43 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 9 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 01:33 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 00:40 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 22 22:02 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 22 22:02 more -rwsr-xr-x 1 root root 59704 Mar 22 22:02 mount -rwxr-xr-x 1 root root 18744 Mar 22 22:02 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 01:33 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 18:25 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 09:23 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Nov 2 2022 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 07:55 sed lrwxrwxrwx 1 root root 4 Jan 5 01:20 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 22 22:02 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 02:25 tar -rwxr-xr-x 1 root root 14520 Nov 2 2022 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 22 20:35 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 22 22:02 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 22 22:02 wdctl lrwxrwxrwx 1 root root 8 Dec 19 01:33 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/3737976/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 18.7 MB of archives. After unpacking 72.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 12 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 24 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Fetched 18.7 MB in 3s (5509 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19596 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../02-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.4-10_amd64.deb ... Unpacking groff-base (1.22.4-10) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.38.1-5+b1_amd64.deb ... Unpacking bsdextrautils (2.38.1-5+b1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.11.2-2_amd64.deb ... Unpacking man-db (2.11.2-2) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-3_amd64.deb ... Unpacking m4 (1.4.19-3) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-12_all.deb ... Unpacking autopoint (0.21-12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.4_all.deb ... Unpacking libdebhelper-perl (13.11.4) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../22-libelf1_0.188-2.1_amd64.deb ... Unpacking libelf1:amd64 (0.188-2.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_amd64.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../24-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-12_amd64.deb ... Unpacking gettext (0.21-12) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/epcr-2.3.12-1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../epcr_2.3.12-1-9_source.changes dpkg-buildpackage: info: source package epcr dpkg-buildpackage: info: source version 2.3.12-1-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --no-parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/build/epcr-2.3.12-1' rm -fr epcr rm -f *_depend.mk rm -f libepcr.a *.o rm -f e-PCR famap fahash re-PCR make[1]: Leaving directory '/build/epcr-2.3.12-1' dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules binary dh binary --no-parallel dh_update_autotools_config -O--no-parallel dh_autoreconf -O--no-parallel dh_auto_configure -O--no-parallel debian/rules override_dh_auto_build make[1]: Entering directory '/build/epcr-2.3.12-1' dh_auto_build -- links depend all OPTIMIZE=6 make -j1 "INSTALL=install --strip-program=true" links depend all OPTIMIZE=6 make[2]: Entering directory '/build/epcr-2.3.12-1' for i in libepcr cmd_epcr cmd_famap cmd_fahash cmd_rpcr ; do \ make -ef ./stand/Makefile.$i CXXFLAGS='-g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1' links ; \ done make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "epcr" ; then \ test -L epcr || ln -s . epcr ; \ fi make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi make[3]: Leaving directory '/build/epcr-2.3.12-1' for i in libepcr cmd_epcr cmd_famap cmd_fahash cmd_rpcr ; do \ make -ef ./stand/Makefile.$i CXXFLAGS='-g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1' depend ; \ done make[3]: Entering directory '/build/epcr-2.3.12-1' g++ -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -M ./faread.cpp ./fast_seqio_read.cpp ./fast_seqio_write.cpp ./hashset.cpp ./mmap.cpp ./align.cpp ./stsmatch_i.cpp ./stsmatch_m.cpp ./stsfilter.cpp ./stsmatch.cpp ./fahash_create.cpp ./fahash_create1.cpp ./fahash_create2.cpp ./fahash_lookup.cpp | perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./libepcr_depend.mk make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' g++ -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -M ./e-PCR_main.cpp | perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./cmdepcr_depend.mk make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' g++ -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -M ./famap_main.cpp | perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./cmdfamap_depend.mk make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' g++ -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -M ./fahash_main.cpp | perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./cmdfahash_depend.mk make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' g++ -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -M ./re-PCR_main.cpp | perl -ne's/^([^\s#]+)/\$(objdir)\/$1/;print' > ./cmdrpcr_depend.mk make[3]: Leaving directory '/build/epcr-2.3.12-1' for i in libepcr cmd_epcr cmd_famap cmd_fahash cmd_rpcr ; do \ make -ef ./stand/Makefile.$i CXXFLAGS='-g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1' all ; \ done make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "epcr" ; then \ test -L epcr || ln -s . epcr ; \ fi g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c faread.cpp -o faread.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fast_seqio_read.cpp -o fast_seqio_read.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fast_seqio_write.cpp -o fast_seqio_write.o fast_seqio_write.cpp:45:40: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix] 45 | FILE * f = fopen64( fname.c_str(), "w"FILE_BINARY ); | ^ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c hashset.cpp -o hashset.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c mmap.cpp -o mmap.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c align.cpp -o align.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c stsmatch_i.cpp -o stsmatch_i.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c stsmatch_m.cpp -o stsmatch_m.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c stsfilter.cpp -o stsfilter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c stsmatch.cpp -o stsmatch.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fahash_create.cpp -o fahash_create.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fahash_create1.cpp -o fahash_create1.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fahash_create2.cpp -o fahash_create2.o fahash_create2.cpp: In member function 'virtual void ncbi::pcr_tools::CFaIndexer2::DumpTables()': fahash_create2.cpp:145:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 145 | auto_ptr fmap( 0 ); | ^~~~~~~~ In file included from /usr/include/c++/12/memory:76, from fahash_create2.cpp:38: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fahash_lookup.cpp -o fahash_lookup.o fahash_lookup.cpp: In member function 'void ncbi::pcr_tools::CFaLookup::AttachFile(const ncbi::pcr_tools::CFaData::string&)': fahash_lookup.cpp:161:13: warning: ignoring return value of 'ssize_t read(int, void*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 161 | read( m_Fd, buff, 16 ); // signature | ~~~~^~~~~~~~~~~~~~~~~~ rm -f libepcr.a ar cru libepcr.a ./faread.o ./fast_seqio_read.o ./fast_seqio_write.o ./hashset.o ./mmap.o ./align.o ./stsmatch_i.o ./stsmatch_m.o ./stsfilter.o ./stsmatch.o ./fahash_create.o ./fahash_create1.o ./fahash_create2.o ./fahash_lookup.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libepcr.a make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c e-PCR_main.cpp -o e-PCR_main.o e-PCR_main.cpp: In member function 'int CMain::Execute()': e-PCR_main.cpp:626:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 626 | auto_ptr cbk(0); | ^~~~~~~~ In file included from /usr/include/c++/12/memory:76, from e-PCR_main.cpp:40: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ rm -f e-PCR g++ -Wl,-z,relro -Wl,-z,now -L. -o e-PCR ./e-PCR_main.o -lepcr make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c famap_main.cpp -o famap_main.o famap_main.cpp: In member function 'int CMain::Execute()': famap_main.cpp:145:1: warning: control reaches end of non-void function [-Wreturn-type] 145 | } | ^ rm -f famap g++ -Wl,-z,relro -Wl,-z,now -L. -o famap ./famap_main.o -lepcr make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c fahash_main.cpp -o fahash_main.o fahash_main.cpp: In member function 'int CMain::Build()': fahash_main.cpp:212:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 212 | auto_ptr indexer( | ^~~~~~~~ In file included from /usr/include/c++/12/memory:76, from fahash_main.cpp:41: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ fahash_main.cpp: In member function 'int CMain::Stat()': fahash_main.cpp:303:41: warning: format '%lld' expects argument of type 'long long int', but argument 6 has type 'long unsigned int' [-Wformat=] 303 | fprintf(out,"%d\t%d\t%s\t%lld\t%lf\n",wd,i,wtype, | ~~~^ | | | long long int | %ld fahash_main.cpp: In member function 'int CMain::Execute()': fahash_main.cpp:261:1: warning: control reaches end of non-void function [-Wreturn-type] 261 | } | ^ rm -f fahash g++ -Wl,-z,relro -Wl,-z,now -L. -o fahash ./fahash_main.o -lepcr make[3]: Leaving directory '/build/epcr-2.3.12-1' make[3]: Entering directory '/build/epcr-2.3.12-1' if test -n "" ; then \ test -L || ln -s . ; \ fi g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -g -O2 -ffile-prefix-map=/build/epcr-2.3.12-1=. -fstack-protector-strong -Wformat -Werror=format-security -I. -g2 -DDEALLOCATE=0 -DVERSION=\"2.3.12-1\" -DVER_MAJOR=2 -DVER_MINOR=3 -DVER_BUILD=12-1 -DSTANDALONE=1 -Wl,-z,relro -Wl,-z,now -L. -c re-PCR_main.cpp -o re-PCR_main.o re-PCR_main.cpp: In member function 'int CMain::PrimerLookup()': re-PCR_main.cpp:365:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 365 | auto_ptr rev(FlipSequence(argv[i])); | ^~~~~~~~ In file included from /usr/include/c++/12/memory:76, from re-PCR_main.cpp:42: /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ re-PCR_main.cpp:395:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 395 | auto_ptr rev(FlipSequence(primer.c_str())); | ^~~~~~~~ /usr/include/c++/12/bits/unique_ptr.h:64:28: note: declared here 64 | template class auto_ptr; | ^~~~~~~~ re-PCR_main.cpp: In member function 'int CMain::STSLookup()': re-PCR_main.cpp:487:58: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'std::__cxx11::list::size_type' {aka 'long unsigned int'} [-Wformat=] 487 | fprintf(stderr,"= File %s, STSes %u-%u\n", | ~^ | | | unsigned int | %lu 488 | argv[i],fcount+1,fcount+stslist.size()); | ~~~~~~~~~~~~~~~~~~~~~ | | | std::__cxx11::list::size_type {aka long unsigned int} re-PCR_main.cpp:501:50: warning: format '%u' expects argument of type 'unsigned int', but argument 5 has type 'std::__cxx11::list::size_type' {aka 'long unsigned int'} [-Wformat=] 501 | fprintf(stderr,"= File %s, STSes %u-%u\n", | ~^ | | | unsigned int | %lu 502 | argv[i],fcount+1,fcount+stslist.size()); | ~~~~~~~~~~~~~~~~~~~~~ | | | std::__cxx11::list::size_type {aka long unsigned int} re-PCR_main.cpp: In member function 'int CMain::Execute()': re-PCR_main.cpp:349:1: warning: control reaches end of non-void function [-Wreturn-type] 349 | } | ^ rm -f re-PCR g++ -Wl,-z,relro -Wl,-z,now -L. -o re-PCR ./re-PCR_main.o -lepcr make[3]: Leaving directory '/build/epcr-2.3.12-1' make[2]: Leaving directory '/build/epcr-2.3.12-1' make[1]: Leaving directory '/build/epcr-2.3.12-1' dh_auto_test -O--no-parallel create-stamp debian/debhelper-build-stamp dh_testroot -O--no-parallel dh_prep -O--no-parallel debian/rules override_dh_auto_install make[1]: Entering directory '/build/epcr-2.3.12-1' # do nothing make[1]: Leaving directory '/build/epcr-2.3.12-1' dh_install -O--no-parallel dh_installdocs -O--no-parallel dh_installchangelogs -O--no-parallel dh_installman -O--no-parallel dh_installsystemduser -O--no-parallel dh_perl -O--no-parallel dh_link -O--no-parallel dh_strip_nondeterminism -O--no-parallel dh_compress -O--no-parallel dh_fixperms -O--no-parallel dh_missing -O--no-parallel dh_dwz -a -O--no-parallel dh_strip -a -O--no-parallel dh_makeshlibs -a -O--no-parallel dh_shlibdeps -a -O--no-parallel dh_installdeb -O--no-parallel dh_gencontrol -O--no-parallel dh_md5sums -O--no-parallel dh_builddeb -O--no-parallel dpkg-deb: building package 'ncbi-epcr' in '../ncbi-epcr_2.3.12-1-9_amd64.deb'. dpkg-deb: building package 'ncbi-epcr-dbgsym' in '../ncbi-epcr-dbgsym_2.3.12-1-9_amd64.deb'. dpkg-genbuildinfo --build=binary -O../epcr_2.3.12-1-9_amd64.buildinfo dpkg-genchanges --build=binary -O../epcr_2.3.12-1-9_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3737976 and its subdirectories I: Current time: Wed May 10 04:53:19 -12 2023 I: pbuilder-time-stamp: 1683737599 Wed May 10 16:53:19 UTC 2023 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Wed May 10 16:53:19 UTC 2023 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Wed May 10 16:57:36 UTC 2023 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Wed May 10 16:57:36 UTC 2023 I: epcr_2.3.12-1-9_amd64.changes: Format: 1.8 Date: Mon, 07 Dec 2020 21:08:43 +0100 Source: epcr Binary: ncbi-epcr ncbi-epcr-dbgsym Architecture: amd64 Version: 2.3.12-1-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: ncbi-epcr - Tool to test a DNA sequence for the presence of sequence tagged s Changes: epcr (2.3.12-1-9) unstable; urgency=medium . * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. * Fix day-of-week for changelog entries 1.2.0-3, 1.2.0-2. Checksums-Sha1: 159292623a9f178e8345c45d03aa082bf6ea352c 5123 epcr_2.3.12-1-9_amd64.buildinfo e4d31d6b0f00e1c1004b3f1c0474438e56cc143c 1685960 ncbi-epcr-dbgsym_2.3.12-1-9_amd64.deb 615a925a1c92829959b8cd1ccd86570d7f176fea 167856 ncbi-epcr_2.3.12-1-9_amd64.deb Checksums-Sha256: 091da2297ff630fcf239080a304109b91878521ac2ce2c32532d41e2a3a5b0a4 5123 epcr_2.3.12-1-9_amd64.buildinfo 46685871f22f52d32c0752f677d5eb4b70a8cf6e847db7406d07f904a4e0fb8e 1685960 ncbi-epcr-dbgsym_2.3.12-1-9_amd64.deb 2a57295d0446240956384439ca8bb208e7c8cb66ff265b60463e5cb53a8ce98c 167856 ncbi-epcr_2.3.12-1-9_amd64.deb Files: 620220d4d00d590fd2d8d07b2e47e869 5123 science optional epcr_2.3.12-1-9_amd64.buildinfo 5a10ebadc4c2d2109af620ac35f23507 1685960 debug optional ncbi-epcr-dbgsym_2.3.12-1-9_amd64.deb c7318d16b2ba0745b66819facf13fccf 167856 science optional ncbi-epcr_2.3.12-1-9_amd64.deb Wed May 10 16:57:37 UTC 2023 I: diffoscope 242 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.bCuxryPW/epcr_2.3.12-1-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.bCuxryPW/epcr_2.3.12-1-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.bCuxryPW/epcr_2.3.12-1-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.bCuxryPW/b1/epcr_2.3.12-1-9_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.bCuxryPW/b2/epcr_2.3.12-1-9_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.370s) 0.370s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.034s) 0.034s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Wed May 10 16:57:39 UTC 2023 I: diffoscope 242 found no differences in the changes files, and a .buildinfo file also exists. Wed May 10 16:57:39 UTC 2023 I: epcr from bookworm built successfully and reproducibly on amd64. Wed May 10 16:57:40 UTC 2023 I: Submitting .buildinfo files to external archives: Wed May 10 16:57:40 UTC 2023 I: Submitting 8.0K b1/epcr_2.3.12-1-9_amd64.buildinfo.asc Wed May 10 16:57:42 UTC 2023 I: Submitting 8.0K b2/epcr_2.3.12-1-9_amd64.buildinfo.asc Wed May 10 16:57:43 UTC 2023 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed May 10 16:57:43 UTC 2023 I: Done submitting .buildinfo files. Wed May 10 16:57:43 UTC 2023 I: Removing signed epcr_2.3.12-1-9_amd64.buildinfo.asc files: removed './b1/epcr_2.3.12-1-9_amd64.buildinfo.asc' removed './b2/epcr_2.3.12-1-9_amd64.buildinfo.asc'