Wed Jan 10 01:34:41 UTC 2024 I: starting to build amp/bookworm/amd64 on jenkins on '2024-01-10 01:34' Wed Jan 10 01:34:41 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_13/12385/console.log Wed Jan 10 01:34:41 UTC 2024 I: Downloading source for bookworm/amp=0.6.1-1 --2024-01-10 01:34:41-- http://cdn-fastly.deb.debian.org/debian/pool/main/a/amp/amp_0.6.1-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2095 (2.0K) [text/prs.lines.tag] Saving to: ‘amp_0.6.1-1.dsc’ 0K .. 100% 356M=0s 2024-01-10 01:34:41 (356 MB/s) - ‘amp_0.6.1-1.dsc’ saved [2095/2095] Wed Jan 10 01:34:41 UTC 2024 I: amp_0.6.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: amp Binary: python3-amp Architecture: any Version: 0.6.1-1 Maintainer: Debian Science Maintainers Uploaders: Muammar El Khatib Homepage: https://bitbucket.org/andrewpeterson/amp Standards-Version: 4.0.0 Vcs-Browser: https://salsa.debian.org/science-team/amp Vcs-Git: https://salsa.debian.org/science-team/amp.git Build-Depends: debhelper-compat (= 11), dh-python, gfortran, python3-all-dev, python3-ase (>= 3.9.0~), python3-matplotlib, python3-nose, python3-numpy, python3-scipy, python3-setuptools, python3-pexpect, python3-zmq, openssh-server Package-List: python3-amp deb science optional arch=any Checksums-Sha1: 5a5a3c352695c5e480e3abdf7d5c988d8ca40e61 3250424 amp_0.6.1.orig.tar.gz 7e67aac6160db68d82eac927c54c3039bbc76fa3 3428 amp_0.6.1-1.debian.tar.xz Checksums-Sha256: 0111cda57c55caa21529c1fae53625e6c9a9653434e0be8d54d6d1a46042116f 3250424 amp_0.6.1.orig.tar.gz a7a870c8f5a33d0d5158a80355a73716f5326bdbd17b56af876039106a34024e 3428 amp_0.6.1-1.debian.tar.xz Files: 8e5350ac9cc6d1857ade89d63cbbd825 3250424 amp_0.6.1.orig.tar.gz 1edd42a5bafc1976ddb7852f741e2548 3428 amp_0.6.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEi3hoeGwz5cZMTQpICBa54Yx2K60FAlvV0RwACgkQCBa54Yx2 K60QGhAAkpWbcW9JH6r7cYCBjGs5VjM6icY++Tafozh2ve0+OyvDm2oX5IfLfboc rmlIrqdHstufIfg1d+J4wz5lIv02HTLHjHxKTtoLgDDaWeKx1fH2oxXEY1vLBSGe V9+voE6q8LD/GrvWTVWqzEp2pdRQlwwfI+DsPw3hQ3JsOIhIiC3oN5Ker/56h27J 6jwjndv1IdJ9hjaROdJdGYawJ4eDrmi7vfM90YAOp5QxMxZuWct1JVllSYUy/oRk ZWhkWQBXk5YPucuZDWk81lC3JG7vIF3JV0wN9lT/Zr0miXq6bWk0oDyiTXCFqXz4 vcavZviEIcSh16HSMXgReLv/LptX/IgCWRSMoBq7L2cdDWT5Ypv0iIq9APElUKHp /oz1se61DgDi2MHLYEDQ+nlJEStM0SvvE0sOlnJf2pQ3oxLvK8v1pRz4laokaRjL WTk6SejTwvYcvtfp0/z8akZifhHHh9x826dr009lCK6Dr0c6qqheETRJKvCVwKww FgL41Si9rNkUlNEWJYCMCIHMwIRgqFEx/OAN5y5GAxhQxBv+TkXAPBJ1Ljq+obM8 hsFHwbnLNgRBGGpHMl1Z0/paaX6NYdm9HDB9rYUQrcpJl55PltnIpMx0AYcSdQ5d XHIhTFApqu0IULIGmc1PkZjXlrf40Bwq035iChvGm9RR41CDyq8= =BG7y -----END PGP SIGNATURE----- Wed Jan 10 01:34:41 UTC 2024 I: Checking whether the package is not for us Wed Jan 10 01:34:41 UTC 2024 I: Starting 1st build on remote node ionos11-amd64.debian.net. Wed Jan 10 01:34:41 UTC 2024 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Wed Jan 10 01:43:37 UTC 2024 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jan 9 13:34:44 -12 2024 I: pbuilder-time-stamp: 1704850484 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [amp_0.6.1-1.dsc] I: copying [./amp_0.6.1.orig.tar.gz] I: copying [./amp_0.6.1-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Oct 28 15:09:16 2018 gpgv: using RSA key 8B7868786C33E5C64C4D0A480816B9E18C762BAD gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./amp_0.6.1-1.dsc: no acceptable signature found dpkg-source: info: extracting amp in amp-0.6.1 dpkg-source: info: unpacking amp_0.6.1.orig.tar.gz dpkg-source: info: unpacking amp_0.6.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_Makefile.patch dpkg-source: info: applying 03_tools.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/881822/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='2cb4359a39d84cddba269ef56e903649' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='881822' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.s3GYFBzq/pbuilderrc_s4TJ --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.s3GYFBzq/b1 --logfile b1/build.log amp_0.6.1-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux I: ls -l /bin total 5632 -rwxr-xr-x 1 root root 1265648 Apr 23 2023 bash -rwxr-xr-x 3 root root 39224 Sep 19 2022 bunzip2 -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 19 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 19 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 19 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 19 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 19 2022 bzgrep -rwxr-xr-x 3 root root 39224 Sep 19 2022 bzip2 -rwxr-xr-x 1 root root 14568 Sep 19 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 19 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 19 2022 bzmore -rwxr-xr-x 1 root root 44016 Sep 20 2022 cat -rwxr-xr-x 1 root root 68656 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 64496 Sep 20 2022 chmod -rwxr-xr-x 1 root root 72752 Sep 20 2022 chown -rwxr-xr-x 1 root root 151152 Sep 20 2022 cp -rwxr-xr-x 1 root root 125640 Jan 5 2023 dash -rwxr-xr-x 1 root root 121904 Sep 20 2022 date -rwxr-xr-x 1 root root 89240 Sep 20 2022 dd -rwxr-xr-x 1 root root 102200 Sep 20 2022 df -rwxr-xr-x 1 root root 151344 Sep 20 2022 dir -rwxr-xr-x 1 root root 88656 Mar 23 2023 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 43856 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 35664 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 85600 Mar 23 2023 findmnt -rwsr-xr-x 1 root root 35128 Mar 23 2023 fusermount -rwxr-xr-x 1 root root 203152 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 98136 Apr 10 2022 gzip -rwxr-xr-x 1 root root 22680 Dec 19 2022 hostname -rwxr-xr-x 1 root root 72824 Sep 20 2022 ln -rwxr-xr-x 1 root root 53024 Mar 23 2023 login -rwxr-xr-x 1 root root 151344 Sep 20 2022 ls -rwxr-xr-x 1 root root 207168 Mar 23 2023 lsblk -rwxr-xr-x 1 root root 97552 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 72912 Sep 20 2022 mknod -rwxr-xr-x 1 root root 43952 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 59712 Mar 23 2023 more -rwsr-xr-x 1 root root 59704 Mar 23 2023 mount -rwxr-xr-x 1 root root 18744 Mar 23 2023 mountpoint -rwxr-xr-x 1 root root 142968 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 3 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 43952 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Apr 23 2023 rbash -> bash -rwxr-xr-x 1 root root 52112 Sep 20 2022 readlink -rwxr-xr-x 1 root root 72752 Sep 20 2022 rm -rwxr-xr-x 1 root root 56240 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 27560 Jul 28 23:46 run-parts -rwxr-xr-x 1 root root 126424 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 43888 Sep 20 2022 sleep -rwxr-xr-x 1 root root 85008 Sep 20 2022 stty -rwsr-xr-x 1 root root 72000 Mar 23 2023 su -rwxr-xr-x 1 root root 39824 Sep 20 2022 sync -rwxr-xr-x 1 root root 531984 Apr 6 2023 tar -rwxr-xr-x 1 root root 14520 Jul 28 23:46 tempfile -rwxr-xr-x 1 root root 109616 Sep 20 2022 touch -rwxr-xr-x 1 root root 35664 Sep 20 2022 true -rwxr-xr-x 1 root root 14568 Mar 23 2023 ulockmgr_server -rwsr-xr-x 1 root root 35128 Mar 23 2023 umount -rwxr-xr-x 1 root root 43888 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 151344 Sep 20 2022 vdir -rwxr-xr-x 1 root root 72024 Mar 23 2023 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/881822/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 11), dh-python, gfortran, python3-all-dev, python3-ase (>= 3.9.0~), python3-matplotlib, python3-nose, python3-numpy, python3-scipy, python3-setuptools, python3-pexpect, python3-zmq, openssh-server dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18148 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 11); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ase (>= 3.9.0~); however: Package python3-ase is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-nose; however: Package python3-nose is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pexpect; however: Package python3-pexpect is not installed. pbuilder-satisfydepends-dummy depends on python3-zmq; however: Package python3-zmq is not installed. pbuilder-satisfydepends-dummy depends on openssh-server; however: Package openssh-server is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-lyx{a} gettext{a} gettext-base{a} gfortran{a} gfortran-12{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libcbor0.8{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-12-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-bootstrap{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libnorm1{a} libopenblas-dev{a} libopenblas-pthread-dev{a} libopenblas0{a} libopenblas0-pthread{a} libopenjp2-7{a} libpgm-5.3-0{a} libpipeline1{a} libpng16-16{a} libproc2-0{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8{a} libsodium23{a} libsub-override-perl{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libwrap0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxsimd-dev{a} libxslt1.1{a} libxss1{a} libzmq5{a} m4{a} man-db{a} media-types{a} openssh-client{a} openssh-server{a} openssh-sftp-server{a} po-debconf{a} procps{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-ase{a} python3-attr{a} python3-beniget{a} python3-brotli{a} python3-cffi-backend{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-fonttools{a} python3-fs{a} python3-gast{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-mpmath{a} python3-nose{a} python3-numpy{a} python3-packaging{a} python3-pexpect{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-ply{a} python3-ptyprocess{a} python3-py{a} python3-pyparsing{a} python3-pythran{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-spglib{a} python3-sympy{a} python3-tk{a} python3-tz{a} python3-ufolib2{a} python3-zmq{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} runit-helper{a} sensible-utils{a} tk8.6-blt2.5{a} tzdata{a} ucf{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl libpam-elogind libpam-systemd lynx ncurses-term psmisc python3-bs4 python3-html5lib python3-olefile shared-mime-info wget xauth xdg-user-dirs 0 packages upgraded, 172 newly installed, 0 to remove and 0 not upgraded. Need to get 137 MB of archives. After unpacking 719 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bookworm/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get: 2 http://deb.debian.org/debian bookworm/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get: 3 http://deb.debian.org/debian bookworm/main amd64 libcbor0.8 amd64 0.8.0-2+b1 [27.4 kB] Get: 4 http://deb.debian.org/debian bookworm/main amd64 libfido2-1 amd64 1.12.0-2+b1 [77.2 kB] Get: 5 http://deb.debian.org/debian bookworm/main amd64 openssh-client amd64 1:9.2p1-2+deb12u1 [989 kB] Get: 6 http://deb.debian.org/debian bookworm/main amd64 openssh-sftp-server amd64 1:9.2p1-2+deb12u1 [65.8 kB] Get: 7 http://deb.debian.org/debian bookworm/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB] Get: 8 http://deb.debian.org/debian bookworm/main amd64 procps amd64 2:4.0.2-3 [709 kB] Get: 9 http://deb.debian.org/debian bookworm/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get: 10 http://deb.debian.org/debian bookworm/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get: 11 http://deb.debian.org/debian bookworm/main amd64 runit-helper all 2.15.2 [6520 B] Get: 12 http://deb.debian.org/debian bookworm/main amd64 libwrap0 amd64 7.6.q-32 [54.9 kB] Get: 13 http://deb.debian.org/debian bookworm/main amd64 openssh-server amd64 1:9.2p1-2+deb12u1 [455 kB] Get: 14 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-minimal amd64 3.11.2-6 [813 kB] Get: 15 http://deb.debian.org/debian bookworm/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get: 16 http://deb.debian.org/debian bookworm/main amd64 python3.11-minimal amd64 3.11.2-6 [2064 kB] Get: 17 http://deb.debian.org/debian bookworm/main amd64 python3-minimal amd64 3.11.2-1+b1 [26.3 kB] Get: 18 http://deb.debian.org/debian bookworm/main amd64 media-types all 10.0.0 [26.1 kB] Get: 19 http://deb.debian.org/debian bookworm/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get: 20 http://deb.debian.org/debian bookworm/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get: 21 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-stdlib amd64 3.11.2-6 [1796 kB] Get: 22 http://deb.debian.org/debian bookworm/main amd64 python3.11 amd64 3.11.2-6 [572 kB] Get: 23 http://deb.debian.org/debian bookworm/main amd64 libpython3-stdlib amd64 3.11.2-1+b1 [9312 B] Get: 24 http://deb.debian.org/debian bookworm/main amd64 python3 amd64 3.11.2-1+b1 [26.3 kB] Get: 25 http://deb.debian.org/debian bookworm/main amd64 tzdata all 2023c-5+deb12u1 [296 kB] Get: 26 http://deb.debian.org/debian bookworm/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get: 27 http://deb.debian.org/debian bookworm/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get: 28 http://deb.debian.org/debian bookworm/main amd64 file amd64 1:5.44-3 [42.5 kB] Get: 29 http://deb.debian.org/debian bookworm/main amd64 gettext-base amd64 0.21-12 [160 kB] Get: 30 http://deb.debian.org/debian bookworm/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get: 31 http://deb.debian.org/debian bookworm/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get: 32 http://deb.debian.org/debian bookworm/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get: 33 http://deb.debian.org/debian bookworm/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get: 34 http://deb.debian.org/debian bookworm/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get: 35 http://deb.debian.org/debian bookworm/main amd64 m4 amd64 1.4.19-3 [287 kB] Get: 36 http://deb.debian.org/debian bookworm/main amd64 autoconf all 2.71-3 [332 kB] Get: 37 http://deb.debian.org/debian bookworm/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian bookworm/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian bookworm/main amd64 autopoint all 0.21-12 [495 kB] Get: 40 http://deb.debian.org/debian bookworm/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [1035 kB] Get: 41 http://deb.debian.org/debian bookworm/main amd64 libbrotli1 amd64 1.0.9-2+b6 [275 kB] Get: 42 http://deb.debian.org/debian bookworm/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get: 43 http://deb.debian.org/debian bookworm/main amd64 libfreetype6 amd64 2.12.1+dfsg-5 [399 kB] Get: 44 http://deb.debian.org/debian bookworm/main amd64 fonts-dejavu-core all 2.37-6 [1068 kB] Get: 45 http://deb.debian.org/debian bookworm/main amd64 fontconfig-config amd64 2.14.1-4 [315 kB] Get: 46 http://deb.debian.org/debian bookworm/main amd64 libfontconfig1 amd64 2.14.1-4 [386 kB] Get: 47 http://deb.debian.org/debian bookworm/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get: 48 http://deb.debian.org/debian bookworm/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 49 http://deb.debian.org/debian bookworm/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get: 50 http://deb.debian.org/debian bookworm/main amd64 libx11-data all 2:1.8.4-2+deb12u2 [292 kB] Get: 51 http://deb.debian.org/debian bookworm/main amd64 libx11-6 amd64 2:1.8.4-2+deb12u2 [760 kB] Get: 52 http://deb.debian.org/debian bookworm/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get: 53 http://deb.debian.org/debian bookworm/main amd64 libxft2 amd64 2.3.6-1 [61.8 kB] Get: 54 http://deb.debian.org/debian bookworm/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 55 http://deb.debian.org/debian bookworm/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 56 http://deb.debian.org/debian bookworm/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get: 57 http://deb.debian.org/debian bookworm/main amd64 libtk8.6 amd64 8.6.13-2 [781 kB] Get: 58 http://deb.debian.org/debian bookworm/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4.1 [593 kB] Get: 59 http://deb.debian.org/debian bookworm/main amd64 blt amd64 2.5.3+dfsg-4.1 [14.9 kB] Get: 60 http://deb.debian.org/debian bookworm/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get: 61 http://deb.debian.org/debian bookworm/main amd64 libtool all 2.4.7-5 [517 kB] Get: 62 http://deb.debian.org/debian bookworm/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 63 http://deb.debian.org/debian bookworm/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 64 http://deb.debian.org/debian bookworm/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get: 65 http://deb.debian.org/debian bookworm/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 66 http://deb.debian.org/debian bookworm/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 67 http://deb.debian.org/debian bookworm/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get: 68 http://deb.debian.org/debian bookworm/main amd64 dwz amd64 0.15-1 [109 kB] Get: 69 http://deb.debian.org/debian bookworm/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get: 70 http://deb.debian.org/debian bookworm/main amd64 libxml2 amd64 2.9.14+dfsg-1.3~deb12u1 [687 kB] Get: 71 http://deb.debian.org/debian bookworm/main amd64 gettext amd64 0.21-12 [1300 kB] Get: 72 http://deb.debian.org/debian bookworm/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 73 http://deb.debian.org/debian bookworm/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 74 http://deb.debian.org/debian bookworm/main amd64 debhelper all 13.11.4 [942 kB] Get: 75 http://deb.debian.org/debian bookworm/main amd64 python3-lib2to3 all 3.11.2-3 [76.3 kB] Get: 76 http://deb.debian.org/debian bookworm/main amd64 python3-distutils all 3.11.2-3 [131 kB] Get: 77 http://deb.debian.org/debian bookworm/main amd64 dh-python all 5.20230130+deb12u1 [104 kB] Get: 78 http://deb.debian.org/debian bookworm/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 79 http://deb.debian.org/debian bookworm/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 80 http://deb.debian.org/debian bookworm/main amd64 fonts-lyx all 2.3.7-1 [186 kB] Get: 81 http://deb.debian.org/debian bookworm/main amd64 libgfortran5 amd64 12.2.0-14 [793 kB] Get: 82 http://deb.debian.org/debian bookworm/main amd64 libgfortran-12-dev amd64 12.2.0-14 [834 kB] Get: 83 http://deb.debian.org/debian bookworm/main amd64 gfortran-12 amd64 12.2.0-14 [10.2 MB] Get: 84 http://deb.debian.org/debian bookworm/main amd64 gfortran amd64 4:12.2.0-3 [1428 B] Get: 85 http://deb.debian.org/debian bookworm/main amd64 libblas3 amd64 3.11.0-2 [149 kB] Get: 86 http://deb.debian.org/debian bookworm/main amd64 libboost1.74-dev amd64 1.74.0+ds1-21 [9508 kB] Get: 87 http://deb.debian.org/debian bookworm/main amd64 libboost-dev amd64 1.74.0.3 [4548 B] Get: 88 http://deb.debian.org/debian bookworm/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get: 89 http://deb.debian.org/debian bookworm/main amd64 libexpat1-dev amd64 2.5.0-1 [150 kB] Get: 90 http://deb.debian.org/debian bookworm/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get: 91 http://deb.debian.org/debian bookworm/main amd64 libglib2.0-0 amd64 2.74.6-2 [1398 kB] Get: 92 http://deb.debian.org/debian bookworm/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get: 93 http://deb.debian.org/debian bookworm/main amd64 libharfbuzz0b amd64 6.0.0+dfsg-3 [1945 kB] Get: 94 http://deb.debian.org/debian bookworm/main amd64 libimagequant0 amd64 2.17.0-1 [32.5 kB] Get: 95 http://deb.debian.org/debian bookworm/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get: 96 http://deb.debian.org/debian bookworm/main amd64 libjpeg62-turbo amd64 1:2.1.5-2 [166 kB] Get: 97 http://deb.debian.org/debian bookworm/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 98 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 99 http://deb.debian.org/debian bookworm/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 100 http://deb.debian.org/debian bookworm/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 101 http://deb.debian.org/debian bookworm/main amd64 libjs-sphinxdoc all 5.3.0-4 [130 kB] Get: 102 http://deb.debian.org/debian bookworm/main amd64 libopenblas0-pthread amd64 0.3.21+ds-4 [6709 kB] Get: 103 http://deb.debian.org/debian bookworm/main amd64 liblapack3 amd64 3.11.0-2 [2323 kB] Get: 104 http://deb.debian.org/debian bookworm/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [28.9 kB] Get: 105 http://deb.debian.org/debian bookworm/main amd64 liblcms2-2 amd64 2.14-2 [154 kB] Get: 106 http://deb.debian.org/debian bookworm/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get: 107 http://deb.debian.org/debian bookworm/main amd64 libnorm1 amd64 1.5.9+dfsg-2 [221 kB] Get: 108 http://deb.debian.org/debian bookworm/main amd64 libopenblas0 amd64 0.3.21+ds-4 [32.6 kB] Get: 109 http://deb.debian.org/debian bookworm/main amd64 libopenblas-pthread-dev amd64 0.3.21+ds-4 [4971 kB] Get: 110 http://deb.debian.org/debian bookworm/main amd64 libopenblas-dev amd64 0.3.21+ds-4 [44.9 kB] Get: 111 http://deb.debian.org/debian bookworm/main amd64 libopenjp2-7 amd64 2.5.0-2 [189 kB] Get: 112 http://deb.debian.org/debian bookworm/main amd64 libpgm-5.3-0 amd64 5.3.128~dfsg-2 [161 kB] Get: 113 http://deb.debian.org/debian bookworm/main amd64 libpython3.11 amd64 3.11.2-6 [1988 kB] Get: 114 http://deb.debian.org/debian bookworm/main amd64 zlib1g-dev amd64 1:1.2.13.dfsg-1 [916 kB] Get: 115 http://deb.debian.org/debian bookworm/main amd64 libpython3.11-dev amd64 3.11.2-6 [4738 kB] Get: 116 http://deb.debian.org/debian bookworm/main amd64 libpython3-dev amd64 3.11.2-1+b1 [9572 B] Get: 117 http://deb.debian.org/debian bookworm/main amd64 libpython3-all-dev amd64 3.11.2-1+b1 [1068 B] Get: 118 http://deb.debian.org/debian bookworm/main amd64 libqhull-r8.0 amd64 2020.2-5 [248 kB] Get: 119 http://deb.debian.org/debian bookworm/main amd64 libraqm0 amd64 0.7.0-4.1 [10.6 kB] Get: 120 http://deb.debian.org/debian bookworm/main amd64 libsodium23 amd64 1.0.18-1 [161 kB] Get: 121 http://deb.debian.org/debian bookworm/main amd64 libwebp7 amd64 1.2.4-0.2+deb12u1 [286 kB] Get: 122 http://deb.debian.org/debian bookworm/main amd64 libtiff6 amd64 4.5.0-6+deb12u1 [316 kB] Get: 123 http://deb.debian.org/debian bookworm/main amd64 libwebpdemux2 amd64 1.2.4-0.2+deb12u1 [99.4 kB] Get: 124 http://deb.debian.org/debian bookworm/main amd64 libwebpmux3 amd64 1.2.4-0.2+deb12u1 [109 kB] Get: 125 http://deb.debian.org/debian bookworm/main amd64 libxsimd-dev amd64 8.1.0-7 [88.8 kB] Get: 126 http://deb.debian.org/debian bookworm/main amd64 libxslt1.1 amd64 1.1.35-1 [242 kB] Get: 127 http://deb.debian.org/debian bookworm/main amd64 libzmq5 amd64 4.3.4-6 [273 kB] Get: 128 http://deb.debian.org/debian bookworm/main amd64 python-matplotlib-data all 3.6.3-1 [2744 kB] Get: 129 http://deb.debian.org/debian bookworm/main amd64 python3-all amd64 3.11.2-1+b1 [1056 B] Get: 130 http://deb.debian.org/debian bookworm/main amd64 python3.11-dev amd64 3.11.2-6 [615 kB] Get: 131 http://deb.debian.org/debian bookworm/main amd64 python3-dev amd64 3.11.2-1+b1 [26.2 kB] Get: 132 http://deb.debian.org/debian bookworm/main amd64 python3-all-dev amd64 3.11.2-1+b1 [1072 B] Get: 133 http://deb.debian.org/debian bookworm/main amd64 python3-appdirs all 1.4.4-3 [13.0 kB] Get: 134 http://deb.debian.org/debian bookworm/main amd64 python3-pkg-resources all 66.1.1-1 [296 kB] Get: 135 http://deb.debian.org/debian bookworm/main amd64 python3-numpy amd64 1:1.24.2-1 [5209 kB] Get: 136 http://deb.debian.org/debian bookworm/main amd64 python3-decorator all 5.1.1-3 [14.9 kB] Get: 137 http://deb.debian.org/debian bookworm/main amd64 python3-gast all 0.5.2-2 [9364 B] Get: 138 http://deb.debian.org/debian bookworm/main amd64 python3-beniget all 0.4.1-3 [9920 B] Get: 139 http://deb.debian.org/debian bookworm/main amd64 python3-ply all 3.11-5 [65.8 kB] Get: 140 http://deb.debian.org/debian bookworm/main amd64 python3-pythran amd64 0.11.0+ds-7 [427 kB] Get: 141 http://deb.debian.org/debian bookworm/main amd64 python3-scipy amd64 1.10.1-2 [15.2 MB] Get: 142 http://deb.debian.org/debian bookworm/main amd64 python3-spglib amd64 2.0.2-1+b3 [205 kB] Get: 143 http://deb.debian.org/debian bookworm/main amd64 python3-six all 1.16.0-4 [17.5 kB] Get: 144 http://deb.debian.org/debian bookworm/main amd64 python3-dateutil all 2.8.2-2 [78.3 kB] Get: 145 http://deb.debian.org/debian bookworm/main amd64 python3-pil amd64 9.4.0-1.1+b1 [472 kB] Get: 146 http://deb.debian.org/debian bookworm/main amd64 python3-tk amd64 3.11.2-3 [98.3 kB] Get: 147 http://deb.debian.org/debian bookworm/main amd64 python3-pil.imagetk amd64 9.4.0-1.1+b1 [74.4 kB] Get: 148 http://deb.debian.org/debian bookworm/main amd64 python3-pyparsing all 3.0.9-1 [138 kB] Get: 149 http://deb.debian.org/debian bookworm/main amd64 python3-contourpy amd64 1.0.7-1+b1 [176 kB] Get: 150 http://deb.debian.org/debian bookworm/main amd64 python3-cycler all 0.11.0-1 [8020 B] Get: 151 http://deb.debian.org/debian bookworm/main amd64 python3-brotli amd64 1.0.9-2+b6 [281 kB] Get: 152 http://deb.debian.org/debian bookworm/main amd64 python3-attr all 22.2.0-1 [65.4 kB] Get: 153 http://deb.debian.org/debian bookworm/main amd64 python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB] Get: 154 http://deb.debian.org/debian bookworm/main amd64 python3-mpmath all 1.2.1-2 [418 kB] Get: 155 http://deb.debian.org/debian bookworm/main amd64 python3-sympy all 1.11.1-1 [4358 kB] Get: 156 http://deb.debian.org/debian bookworm/main amd64 python3-tz all 2022.7.1-4 [30.1 kB] Get: 157 http://deb.debian.org/debian bookworm/main amd64 python3-fs all 2.4.16-2 [95.2 kB] Get: 158 http://deb.debian.org/debian bookworm/main amd64 python3-lxml amd64 4.9.2-1+b1 [1194 kB] Get: 159 http://deb.debian.org/debian bookworm/main amd64 python3-lz4 amd64 4.0.2+dfsg-1+b2 [25.0 kB] Get: 160 http://deb.debian.org/debian bookworm/main amd64 unicode-data all 15.0.0-1 [7984 kB] Get: 161 http://deb.debian.org/debian bookworm/main amd64 python3-fonttools amd64 4.38.0-1+b1 [1012 kB] Get: 162 http://deb.debian.org/debian bookworm/main amd64 python3-kiwisolver amd64 1.4.4-1+b1 [60.1 kB] Get: 163 http://deb.debian.org/debian bookworm/main amd64 python3-packaging all 23.0-1 [32.5 kB] Get: 164 http://deb.debian.org/debian bookworm/main amd64 python3-matplotlib amd64 3.6.3-1+b1 [6921 kB] Get: 165 http://deb.debian.org/debian bookworm/main amd64 python3-ase all 3.22.1-3 [1354 kB] Get: 166 http://deb.debian.org/debian bookworm/main amd64 python3-cffi-backend amd64 1.15.1-5+b1 [84.6 kB] Get: 167 http://deb.debian.org/debian bookworm/main amd64 python3-nose all 1.3.7-9 [130 kB] Get: 168 http://deb.debian.org/debian bookworm/main amd64 python3-ptyprocess all 0.7.0-5 [14.7 kB] Get: 169 http://deb.debian.org/debian bookworm/main amd64 python3-pexpect all 4.8.0-4 [52.9 kB] Get: 170 http://deb.debian.org/debian bookworm/main amd64 python3-py all 1.11.0-1 [89.2 kB] Get: 171 http://deb.debian.org/debian bookworm/main amd64 python3-setuptools all 66.1.1-1 [521 kB] Get: 172 http://deb.debian.org/debian bookworm/main amd64 python3-zmq amd64 24.0.1-4+b1 [263 kB] Fetched 137 MB in 7s (18.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18148 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.11.7-2_amd64.deb ... Unpacking libbsd0:amd64 (0.11.7-2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../01-libedit2_3.1-20221030-2_amd64.deb ... Unpacking libedit2:amd64 (3.1-20221030-2) ... Selecting previously unselected package libcbor0.8:amd64. Preparing to unpack .../02-libcbor0.8_0.8.0-2+b1_amd64.deb ... Unpacking libcbor0.8:amd64 (0.8.0-2+b1) ... Selecting previously unselected package libfido2-1:amd64. Preparing to unpack .../03-libfido2-1_1.12.0-2+b1_amd64.deb ... Unpacking libfido2-1:amd64 (1.12.0-2+b1) ... Selecting previously unselected package openssh-client. Preparing to unpack .../04-openssh-client_1%3a9.2p1-2+deb12u1_amd64.deb ... Unpacking openssh-client (1:9.2p1-2+deb12u1) ... Selecting previously unselected package openssh-sftp-server. Preparing to unpack .../05-openssh-sftp-server_1%3a9.2p1-2+deb12u1_amd64.deb ... Unpacking openssh-sftp-server (1:9.2p1-2+deb12u1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../06-libproc2-0_2%3a4.0.2-3_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../07-procps_2%3a4.0.2-3_amd64.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../08-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package ucf. Preparing to unpack .../09-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package runit-helper. Preparing to unpack .../10-runit-helper_2.15.2_all.deb ... Unpacking runit-helper (2.15.2) ... Selecting previously unselected package libwrap0:amd64. Preparing to unpack .../11-libwrap0_7.6.q-32_amd64.deb ... Unpacking libwrap0:amd64 (7.6.q-32) ... Selecting previously unselected package openssh-server. Preparing to unpack .../12-openssh-server_1%3a9.2p1-2+deb12u1_amd64.deb ... Unpacking openssh-server (1:9.2p1-2+deb12u1) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../13-libpython3.11-minimal_3.11.2-6_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.2-6) ... 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Unpacking python3-zmq (24.0.1-4+b1) ... Setting up media-types (10.0.0) ... Setting up libpipeline1:amd64 (1.5.7-1) ... Setting up libgraphite2-3:amd64 (1.3.14-1) ... Setting up liblcms2-2:amd64 (2.14-2) ... Setting up runit-helper (2.15.2) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libboost1.74-dev:amd64 (1.74.0+ds1-21) ... Setting up libsodium23:amd64 (1.0.18-1) ... Setting up libicu72:amd64 (72.1-3) ... Setting up liblerc4:amd64 (4.0.0+ds-2) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.74.6-2) ... No schema files found: doing nothing. Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Setting up libpgm-5.3-0:amd64 (5.3.128~dfsg-2) ... Setting up fonts-lyx (2.3.7-1) ... Setting up libcbor0.8:amd64 (0.8.0-2+b1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libbrotli1:amd64 (1.0.9-2+b6) ... Setting up libnorm1:amd64 (1.5.9+dfsg-2) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libmagic1:amd64 (1:5.44-3) ... Setting up libdeflate0:amd64 (1.14-1) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up libqhull-r8.0:amd64 (2020.2-5) ... Setting up file (1:5.44-3) ... Setting up libjbig0:amd64 (2.1-6.1) ... Setting up tzdata (2023c-5+deb12u1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Jan 10 01:36:58 UTC 2024. Universal Time is now: Wed Jan 10 01:36:58 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.0.0-1) ... Setting up libxsimd-dev:amd64 (8.1.0-7) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libexpat1-dev:amd64 (2.5.0-1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-2) ... Setting up libwrap0:amd64 (7.6.q-32) ... Setting up libx11-data (2:1.8.4-2+deb12u2) ... Setting up libfribidi0:amd64 (1.0.8-2.1) ... Setting up libimagequant0:amd64 (2.17.0-1) ... Setting up libproc2-0:amd64 (2:4.0.2-3) ... Setting up libpng16-16:amd64 (1.6.39-2) ... Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... Setting up autopoint (0.21-12) ... Setting up fonts-dejavu-core (2.37-6) ... Setting up libgfortran5:amd64 (12.2.0-14) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:amd64 (1.2.4-0.2+deb12u1) ... Setting up zlib1g-dev:amd64 (1:1.2.13.dfsg-1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libtiff6:amd64 (4.5.0-6+deb12u1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up procps (2:4.0.2-3) ... Setting up libopenjp2-7:amd64 (2.5.0-2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libboost-dev:amd64 (1.74.0.3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libfido2-1:amd64 (1.12.0-2+b1) ... Setting up python-matplotlib-data (3.6.3-1) ... Setting up libwebpmux3:amd64 (1.2.4-0.2+deb12u1) ... Setting up libbsd0:amd64 (0.11.7-2) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up readline-common (8.2-1.3) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3~deb12u1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up liblapack3:amd64 (3.11.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libxcb1:amd64 (1.15-1) ... Setting up gettext (0.21-12) ... Setting up libopenblas0-pthread:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libzmq5:amd64 (4.3.4-6) ... Setting up libtool (2.4.7-5) ... Setting up fontconfig-config (2.14.1-4) ... Setting up libwebpdemux2:amd64 (1.2.4-0.2+deb12u1) ... Setting up libedit2:amd64 (3.1-20221030-2) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libgfortran-12-dev:amd64 (12.2.0-14) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up gfortran-12 (12.2.0-14) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-5) ... Setting up ucf (3.0043+nmu1) ... Setting up libjs-sphinxdoc (5.3.0-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up libopenblas0:amd64 (0.3.21+ds-4) ... Setting up groff-base (1.22.4-10) ... Setting up libxslt1.1:amd64 (1.1.35-1) ... Setting up libx11-6:amd64 (2:1.8.4-2+deb12u2) ... Setting up libharfbuzz0b:amd64 (6.0.0+dfsg-3) ... Setting up libfontconfig1:amd64 (2.14.1-4) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1) ... Setting up libopenblas-pthread-dev:amd64 (0.3.21+ds-4) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up openssh-client (1:9.2p1-2+deb12u1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.2-6) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:12.2.0-3) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libopenblas-dev:amd64 (0.3.21+ds-4) ... Setting up libraqm0:amd64 (0.7.0-4.1) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libpython3-stdlib:amd64 (3.11.2-1+b1) ... Setting up openssh-sftp-server (1:9.2p1-2+deb12u1) ... Setting up python3.11 (3.11.2-6) ... Setting up libxft2:amd64 (2.3.6-1) ... Setting up libpython3.11:amd64 (3.11.2-6) ... Setting up openssh-server (1:9.2p1-2+deb12u1) ... Creating config file /etc/ssh/sshd_config with new version Creating SSH2 RSA key; this may take some time ... 3072 SHA256:Y1xogIz/vawgSqBW478Ap2a8v0Vb+ivRz9f+8CgSpkw root@ionos11-amd64 (RSA) Creating SSH2 ECDSA key; this may take some time ... 256 SHA256:/jvwOmX1QkG7xOfWftxWbsFsYRjFWi9qNgGlP1yeZGQ root@ionos11-amd64 (ECDSA) Creating SSH2 ED25519 key; this may take some time ... 256 SHA256:wIAleSmNV2/RvUSjPUdv1zXfuktFlUezUN1WkhxGgfQ root@ionos11-amd64 (ED25519) invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libtk8.6:amd64 (8.6.13-2) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.2-1+b1) ... Setting up python3-tz (2022.7.1-4) ... Setting up python3-six (1.16.0-4) ... Setting up python3-decorator (5.1.1-3) ... Setting up python3-packaging (23.0-1) ... Setting up python3-pyparsing (3.0.9-1) ... Setting up libpython3.11-dev:amd64 (3.11.2-6) ... Setting up python3-brotli (1.0.9-2+b6) ... Setting up python3-cycler (0.11.0-1) ... Setting up python3-kiwisolver (1.4.4-1+b1) ... Setting up python3-lxml:amd64 (4.9.2-1+b1) ... Setting up python3-dateutil (2.8.2-2) ... Setting up python3-mpmath (1.2.1-2) ... Setting up python3-lib2to3 (3.11.2-3) ... Setting up python3-appdirs (1.4.4-3) ... Setting up python3-cffi-backend:amd64 (1.15.1-5+b1) ... Setting up python3-ptyprocess (0.7.0-5) ... Setting up python3-pkg-resources (66.1.1-1) ... Setting up python3-distutils (3.11.2-3) ... Setting up dh-python (5.20230130+deb12u1) ... Setting up python3-sympy (1.11.1-1) ... Setting up python3-attr (22.2.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up libpython3-dev:amd64 (3.11.2-1+b1) ... Setting up python3-setuptools (66.1.1-1) ... Setting up python3-py (1.11.0-1) ... Setting up python3-lz4 (4.0.2+dfsg-1+b2) ... Setting up python3.11-dev (3.11.2-6) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-ply (3.11-5) ... Setting up python3-gast (0.5.2-2) ... Setting up python3-all (3.11.2-1+b1) ... Setting up python3-tk:amd64 (3.11.2-3) ... Setting up python3-nose (1.3.7-9) ... Setting up python3-fs (2.4.16-2) ... Setting up python3-beniget (0.4.1-3) ... Setting up libpython3-all-dev:amd64 (3.11.2-1+b1) ... Setting up python3-pexpect (4.8.0-4) ... Setting up python3-zmq (24.0.1-4+b1) ... Setting up python3-dev (3.11.2-1+b1) ... Setting up python3-numpy (1:1.24.2-1) ... Setting up python3-contourpy (1.0.7-1+b1) ... Setting up python3-spglib (2.0.2-1+b3) ... Setting up python3-all-dev (3.11.2-1+b1) ... Setting up python3-pythran (0.11.0+ds-7) ... Setting up python3-scipy (1.10.1-2) ... Setting up python3-pil:amd64 (9.4.0-1.1+b1) ... Setting up python3-pil.imagetk:amd64 (9.4.0-1.1+b1) ... Setting up python3-ufolib2 (0.14.0+dfsg1-1) ... Setting up python3-fonttools (4.38.0-1+b1) ... Setting up python3-matplotlib (3.6.3-1+b1) ... Setting up python3-ase (3.22.1-3) ... Processing triggers for libc-bin (2.36-9+deb12u3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.31-1.2). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/amp-0.6.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../amp_0.6.1-1_source.changes dpkg-buildpackage: info: source package amp dpkg-buildpackage: info: source version 0.6.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Mattia Rizzolo dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/amp-0.6.1' dh_auto_clean I: pybuild base:240: python3.11 setup.py clean /build/reproducible-path/amp-0.6.1/setup.py:4: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.core import Extension, setup running clean removing '/build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts.linux-x86_64-3.11' does not exist -- can't clean it rm -rf amp.egg-info/ find . -name "*.json" -delete find . -name "*-train-log.txt" -delete find . -name "*.pyc" -delete find . -name "*.o" -delete find . -name "*.mod" -delete find . -name "*.so" -delete make[1]: Leaving directory '/build/reproducible-path/amp-0.6.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:240: python3.11 setup.py config /build/reproducible-path/amp-0.6.1/setup.py:4: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.core import Extension, setup running config dh_auto_build -O--buildsystem=pybuild I: pybuild pybuild:307: make -C amp python3.11 make[1]: Entering directory '/build/reproducible-path/amp-0.6.1/amp' Building for python3.11 (3.11) make -C model make[2]: Entering directory '/build/reproducible-path/amp-0.6.1/amp/model' gfortran -c neuralnetwork.f90 cp neuralnetwork.mod .. make[2]: Leaving directory '/build/reproducible-path/amp-0.6.1/amp/model' make -C descriptor make[2]: Entering directory '/build/reproducible-path/amp-0.6.1/amp/descriptor' gfortran -c cutoffs.f90 cp cutoffs.mod .. make[2]: Leaving directory '/build/reproducible-path/amp-0.6.1/amp/descriptor' f2py3.11 -c -m fmodules model.f90 descriptor/cutoffs.f90 descriptor/gaussian.f90 descriptor/zernike.f90 model/neuralnetwork.f90 running build running config_cc INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src INFO: build_src INFO: building extension "fmodules" sources INFO: f2py options: [] INFO: f2py:> /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodulesmodule.c creating /tmp/tmpykv1slzq/src.linux-x86_64-3.11 rmbadname1: Replacing "index" with "index_bn". Reading fortran codes... Reading file 'model.f90' (format:fix) ::image_forces ::integer_one_d_array ::embedded_real_one_one_d_array ::embedded_real_one_two_d_array ::embedded_integer_one_one_d_array ::embedded_one_one_two_d_array Reading file 'descriptor/cutoffs.f90' (format:fix) Reading file 'descriptor/gaussian.f90' (format:free) Reading file 'descriptor/zernike.f90' (format:free) Reading file 'model/neuralnetwork.f90' (format:fix) ::real_two_d_array ::element_parameters ::real_one_d_array Post-processing... Block: fmodules Block: check_version Block: fingerprint_props Block: model_props Block: images_props {} In: :fmodules:model.f90:calculate_loss:calculate_energy vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_forces vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_numerical_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_dforces_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:model.f90:calculate_loss:calculate_numerical_dforces_dparameters vars2fortran: No typespec for argument "image_no". Block: calculate_loss In: :fmodules:model.f90:calculate_loss get_useparameters: no module neuralnetwork info used by calculate_loss Block: image_forces In: :fmodules:model.f90:calculate_loss:image_forces get_useparameters: no module neuralnetwork info used by image_forces Block: integer_one_d_array In: :fmodules:model.f90:calculate_loss:integer_one_d_array get_useparameters: no module neuralnetwork info used by integer_one_d_array Block: embedded_real_one_one_d_array In: :fmodules:model.f90:calculate_loss:embedded_real_one_one_d_array get_useparameters: no module neuralnetwork info used by embedded_real_one_one_d_array Block: embedded_real_one_two_d_array In: :fmodules:model.f90:calculate_loss:embedded_real_one_two_d_array get_useparameters: no module neuralnetwork info used by embedded_real_one_two_d_array Block: embedded_integer_one_one_d_array In: :fmodules:model.f90:calculate_loss:embedded_integer_one_one_d_array get_useparameters: no module neuralnetwork info used by embedded_integer_one_one_d_array Block: embedded_one_one_two_d_array In: :fmodules:model.f90:calculate_loss:embedded_one_one_two_d_array get_useparameters: no module neuralnetwork info used by embedded_one_one_two_d_array Block: deallocate_variables In: :fmodules:model.f90:deallocate_variables get_useparameters: no module neuralnetwork info used by deallocate_variables Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_g2 Block: calculate_g4 Block: calculate_g2_prime Block: calculate_g4_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: neuralnetwork Block: real_two_d_array Block: element_parameters Block: real_one_d_array Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Applying post-processing hooks... character_backward_compatibility_hook Post-processing (stage 2)... Block: fmodules Block: unknown_interface Block: check_version Block: fingerprint_props Block: model_props Block: images_props Block: calculate_loss Block: image_forces Block: integer_one_d_array Block: embedded_real_one_one_d_array Block: embedded_real_one_two_d_array Block: embedded_integer_one_one_d_array Block: embedded_one_one_two_d_array Block: deallocate_variables Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_g2 Block: calculate_g4 Block: calculate_g2_prime Block: calculate_g4_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: neuralnetwork Block: real_two_d_array Block: element_parameters Block: real_one_d_array Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Building modules... Building module "fmodules"... Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "check_version"... warning = check_version(version) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_loss"... loss,dloss_dparameters,energyloss,forceloss,energy_maxresid,force_maxresid = calculate_loss(parameters,lossprime,[num_parameters]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "deallocate_variables"... deallocate_variables() Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g2"... ridge = calculate_g2(neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,ri,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g4"... ridge = calculate_g4(neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,ri,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g2_prime"... ridge = calculate_g2_prime(neighborindices,neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g4_prime"... ridge = calculate_g4_prime(neighborindices,neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_zernike_prime"... norm_prime = calculate_zernike_prime(n,l,n_indices,numbers,rs,g_numbers,cutoff,indexx,home,p,q,factorial,cutofffn,[n_length,fac_length,p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_z"... output = calculate_z(n,l,m,x,y,z,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_z_prime"... output = calculate_z_prime(n,l,m,x,y,z,p,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_q"... output = calculate_q(nu,k,l,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "binomial"... output = binomial(n,k,factorial,[length]) Constructing F90 module support for "fingerprint_props"... Variables: num_fingerprints_of_elements raveled_fingerprints raveled_fingerprintprimes getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "model_props"... Variables: mode_signal train_forces energy_coefficient force_coefficient overfit numericprime d Constructing F90 module support for "images_props"... Variables: num_images num_elements elements_numbers num_images_atoms atomic_numbers num_neighbors raveled_neighborlists actual_energies actual_forces num_atoms atomic_positions getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "cutoffs"... Creating wrapper for Fortran function "cutoff_fxn"("cutoff_fxn")... Constructing wrapper function "cutoffs.cutoff_fxn"... cutoff_fxn = cutoff_fxn(r,rc,cutofffn,[p_gamma]) Creating wrapper for Fortran function "cutoff_fxn_prime"("cutoff_fxn_prime")... Constructing wrapper function "cutoffs.cutoff_fxn_prime"... cutoff_fxn_prime = cutoff_fxn_prime(r,rc,cutofffn,[p_gamma]) Constructing F90 module support for "neuralnetwork"... Variables: min_fingerprints max_fingerprints no_layers_of_elements no_nodes_of_elements activation_signal getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' f90mod_rules.buildhooks: skipping type real_two_d_array f90mod_rules.buildhooks: skipping type element_parameters f90mod_rules.buildhooks: skipping type real_one_d_array Creating wrapper for Fortran function "calculate_image_energy"("calculate_image_energy")... Constructing wrapper function "neuralnetwork.calculate_image_energy"... calculate_image_energy = calculate_image_energy(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_atomic_energy"("calculate_atomic_energy")... Constructing wrapper function "neuralnetwork.calculate_atomic_energy"... calculate_atomic_energy = calculate_atomic_energy(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_force_"("calculate_force_")... Constructing wrapper function "neuralnetwork.calculate_force_"... calculate_force_ = calculate_force_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_force"("calculate_force")... Constructing wrapper function "neuralnetwork.calculate_force"... calculate_force = calculate_force(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_denergy_dparameters_"("calculate_denergy_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_denergy_dparameters_"... calculate_denergy_dparameters_ = calculate_denergy_dparameters_(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_datomicenergy_dparameters"("calculate_datomicenergy_dparameters")... Constructing wrapper function "neuralnetwork.calculate_datomicenergy_dparameters"... calculate_datomicenergy_dparameters = calculate_datomicenergy_dparameters(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters_"("calculate_dforce_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters_"... calculate_dforce_dparameters_ = calculate_dforce_dparameters_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters"("calculate_dforce_dparameters")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters"... calculate_dforce_dparameters = calculate_dforce_dparameters(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Wrote C/API module "fmodules" to file "/tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodulesmodule.c" Fortran 90 wrappers are saved to "/tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90" INFO: adding '/tmp/tmpykv1slzq/src.linux-x86_64-3.11/fortranobject.c' to sources. INFO: adding '/tmp/tmpykv1slzq/src.linux-x86_64-3.11' to include_dirs. copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.c -> /tmp/tmpykv1slzq/src.linux-x86_64-3.11 copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.h -> /tmp/tmpykv1slzq/src.linux-x86_64-3.11 INFO: adding '/tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers.f' to sources. INFO: adding '/tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90' to sources. INFO: build_src: building npy-pkg config files /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build_ext INFO: customize UnixCCompiler INFO: customize UnixCCompiler using build_ext INFO: get_default_fcompiler: matching types: '['arm', 'gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' INFO: customize ArmFlangCompiler WARN: Could not locate executable armflang INFO: customize Gnu95FCompiler INFO: Found executable /usr/bin/gfortran INFO: customize Gnu95FCompiler INFO: customize Gnu95FCompiler using build_ext INFO: building 'fmodules' extension INFO: compiling C sources INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating /tmp/tmpykv1slzq/tmp creating /tmp/tmpykv1slzq/tmp/tmpykv1slzq creating /tmp/tmpykv1slzq/tmp/tmpykv1slzq/src.linux-x86_64-3.11 INFO: compile options: '-DNPY_DISABLE_OPTIMIZATION=1 -I/tmp/tmpykv1slzq/src.linux-x86_64-3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c' INFO: x86_64-linux-gnu-gcc: /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodulesmodule.c INFO: x86_64-linux-gnu-gcc: /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fortranobject.c /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodulesmodule.c: In function 'f2py_setup_fingerprint_props': /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodulesmodule.c:4175:45: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4175 | f2py_fingerprint_props_def[i_f2py++].func = num_fingerprints_of_elements; | ^ /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodulesmodule.c:4176:45: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4176 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprints; | ^ /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodulesmodule.c:4177:45: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4177 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprintprimes; | ^ /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodulesmodule.c: In function 'f2py_setup_images_props': /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodulesmodule.c:4231:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4231 | f2py_images_props_def[i_f2py++].func = elements_numbers; | ^ /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodulesmodule.c:4232:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4232 | f2py_images_props_def[i_f2py++].func = num_images_atoms; | ^ /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodulesmodule.c:4233:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4233 | f2py_images_props_def[i_f2py++].func = atomic_numbers; | ^ /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodulesmodule.c:4234:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4234 | f2py_images_props_def[i_f2py++].func = num_neighbors; | ^ /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodulesmodule.c:4235:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4235 | f2py_images_props_def[i_f2py++].func = raveled_neighborlists; | ^ /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodulesmodule.c:4236:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4236 | f2py_images_props_def[i_f2py++].func = actual_energies; | ^ /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodulesmodule.c:4237:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4237 | f2py_images_props_def[i_f2py++].func = actual_forces; | ^ /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodulesmodule.c:4239:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4239 | f2py_images_props_def[i_f2py++].func = atomic_positions; | ^ /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodulesmodule.c: In function 'f2py_setup_neuralnetwork': /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodulesmodule.c:4283:41: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4283 | f2py_neuralnetwork_def[i_f2py++].func = min_fingerprints; | ^ /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodulesmodule.c:4284:41: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4284 | f2py_neuralnetwork_def[i_f2py++].func = max_fingerprints; | ^ /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodulesmodule.c:4285:41: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4285 | f2py_neuralnetwork_def[i_f2py++].func = no_layers_of_elements; | ^ /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodulesmodule.c:4286:41: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4286 | f2py_neuralnetwork_def[i_f2py++].func = no_nodes_of_elements; | ^ INFO: compiling Fortran 90 module sources INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops creating /tmp/tmpykv1slzq/descriptor creating /tmp/tmpykv1slzq/model INFO: compile options: '-I/tmp/tmpykv1slzq/src.linux-x86_64-3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c' extra options: '-J/tmp/tmpykv1slzq/ -I/tmp/tmpykv1slzq/' INFO: gfortran:f90: model.f90 model.f90:219:2: 219 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:220:2: 220 | denergy_dparameters(j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:221:2: 221 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:269:2: 269 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:270:2: 270 | allocate(dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:271:2: 271 | selfindex)%twodarray(3, num_parameters)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:272:2: 272 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:273:2: 273 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:274:2: 274 | dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:275:2: 275 | selfindex)%twodarray(i, j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:276:2: 276 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:277:2: 277 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:278:2: 278 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:300:2: 300 | do p = 1, size(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:301:2: 301 | deallocate(dforces_dparameters(p)%twodarray) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:302:2: 302 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:303:2: 303 | deallocate(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:323:2: 323 | doverfitloss_dparameters(j) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:646:2: 646 | allocate(fplus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:647:2: 647 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:648:2: 648 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:649:2: 649 | fplus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:650:2: 650 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:651:2: 651 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:655:2: 655 | allocate(fminus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:656:2: 656 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:657:2: 657 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:658:2: 658 | fminus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:659:2: 659 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model.f90:660:2: 660 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] INFO: gfortran:f90: descriptor/cutoffs.f90 INFO: gfortran:f90: model/neuralnetwork.f90 model/neuralnetwork.f90:1379:2: 1379 | unraveled_dforce_dweights(layer)%twodarray(p, q) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1380:2: 1380 | -1.0d0 * unraveled_dforce_dweights(layer)%twodarray(p, q) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1767:2: 1767 | unraveled_dforce_dparameters(element)%slope = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1768:2: 1768 | -1.0d0 * unraveled_dforce_dparameters(element)%slope | 1 Warning: Nonconforming tab character at (1) [-Wtabs] model/neuralnetwork.f90:1802:2: 1802 | unraveled_dforce_dparameters(element)%weights(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] INFO: compiling Fortran sources INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops INFO: compile options: '-I/tmp/tmpykv1slzq/src.linux-x86_64-3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c' extra options: '-J/tmp/tmpykv1slzq/ -I/tmp/tmpykv1slzq/' INFO: gfortran:f90: descriptor/gaussian.f90 INFO: gfortran:f90: descriptor/zernike.f90 INFO: gfortran:f90: /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90 /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90:407:44: 407 | subroutine f2pywrap_cutoffs_cutoff_fxn (cutoff_fxnf2pywrap, r, rc,& | 1 ...... 431 | subroutine f2pywrap_cutoffs_cutoff_fxn (cutoff_fxnf2pywrap, cutoff& | 2 Warning: Type mismatch in argument 'rc' (REAL(8)/CHARACTER(20)) between (1) and (2) /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90:417:50: 417 | subroutine f2pywrap_cutoffs_cutoff_fxn_prime (cutoff_fxn_primef2py& | 1 ...... 440 | subroutine f2pywrap_cutoffs_cutoff_fxn_prime (cutoff_fxn_primef2py& | 2 Warning: Type mismatch in argument 'rc' (REAL(8)/CHARACTER(20)) between (1) and (2) /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90:591:63: 591 | subroutine f2pywrap_neuralnetwork_calculate_atomic_energy (calcula& | 1 ...... 722 | subroutine f2pywrap_neuralnetwork_calculate_atomic_energy (calcula& | 2 Warning: Type mismatch in argument 'calculate_atomic_energy' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90:652:9: 652 | &ers (calculate_datomicenergy_dparametersf2pywrap, symbol, len_of_f& | 1 ...... 775 | &ers (calculate_datomicenergy_dparametersf2pywrap, calculate_datomi& | 2 Warning: Type mismatch in argument 'calculate_datomicenergy_dparameters' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90:637:70: 637 | subroutine f2pywrap_neuralnetwork_calculate_denergy_dparameters_ (& | 1 ...... 762 | subroutine f2pywrap_neuralnetwork_calculate_denergy_dparameters_ (& | 2 Warning: Type mismatch in argument 'calculate_denergy_dparameters_' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90:685:68: 685 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters (ca& | 1 ...... 804 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters (ca& | 2 Warning: Type mismatch in argument 'calculate_dforce_dparameters' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90:670:69: 670 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters_ (c& | 1 ...... 791 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters_ (c& | 2 Warning: Type mismatch in argument 'calculate_dforce_dparameters_' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90:620:55: 620 | subroutine f2pywrap_neuralnetwork_calculate_force (calculate_force& | 1 ...... 747 | subroutine f2pywrap_neuralnetwork_calculate_force (calculate_force& | 2 Warning: Type mismatch in argument 'calculate_force' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90:607:56: 607 | subroutine f2pywrap_neuralnetwork_calculate_force_ (calculate_forc& | 1 ...... 736 | subroutine f2pywrap_neuralnetwork_calculate_force_ (calculate_forc& | 2 Warning: Type mismatch in argument 'calculate_force_' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90:579:62: 579 | subroutine f2pywrap_neuralnetwork_calculate_image_energy (calculat& | 1 ...... 712 | subroutine f2pywrap_neuralnetwork_calculate_image_energy (calculat& | 2 Warning: Type mismatch in argument 'calculate_image_energy' (REAL(8)/INTEGER(4)) between (1) and (2) /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable 'num_fingerprints_of_elements' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable 'raveled_fingerprintprimes' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90:102:10: 102 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable 'raveled_fingerprints' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'actual_energies' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'actual_forces' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'atomic_numbers' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'atomic_positions' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'elements_numbers' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'num_images_atoms' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'num_neighbors' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90:379:10: 379 | use images_props, only : num_images | 1 Warning: Unused module variable 'raveled_neighborlists' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'max_fingerprints' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'min_fingerprints' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'no_layers_of_elements' which has been explicitly imported at (1) [-Wunused-variable] /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.f90:706:10: 706 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'no_nodes_of_elements' which has been explicitly imported at (1) [-Wunused-variable] INFO: gfortran:f77: /tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers.f INFO: /usr/bin/gfortran -Wall -g -Wall -g -shared -Wl,-z,relro -Wl,-z,now -shared /tmp/tmpykv1slzq/tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodulesmodule.o /tmp/tmpykv1slzq/tmp/tmpykv1slzq/src.linux-x86_64-3.11/fortranobject.o /tmp/tmpykv1slzq/model.o /tmp/tmpykv1slzq/descriptor/cutoffs.o /tmp/tmpykv1slzq/model/neuralnetwork.o /tmp/tmpykv1slzq/descriptor/gaussian.o /tmp/tmpykv1slzq/descriptor/zernike.o /tmp/tmpykv1slzq/tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers.o /tmp/tmpykv1slzq/tmp/tmpykv1slzq/src.linux-x86_64-3.11/fmodules-f2pywrappers2.o -L/usr/lib/gcc/x86_64-linux-gnu/12 -L/usr/lib/gcc/x86_64-linux-gnu/12 -L/usr/lib/x86_64-linux-gnu -lgfortran -o ./fmodules.cpython-311-x86_64-linux-gnu.so Removing build directory /tmp/tmpykv1slzq make[1]: Leaving directory '/build/reproducible-path/amp-0.6.1/amp' I: pybuild base:240: /usr/bin/python3 setup.py build /build/reproducible-path/amp-0.6.1/setup.py:4: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.core import Extension, setup running build running config_cc INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src INFO: build_src INFO: building extension "amp.fmodules" sources INFO: f2py options: [] INFO: f2py:> build/src.linux-x86_64-3.11/amp/fmodulesmodule.c creating build creating build/src.linux-x86_64-3.11 creating build/src.linux-x86_64-3.11/amp rmbadname1: Replacing "index" with "index_bn". Reading fortran codes... Reading file 'amp/model/neuralnetwork.f90' (format:fix) ::real_two_d_array ::element_parameters ::real_one_d_array Reading file 'amp/descriptor/gaussian.f90' (format:free) Reading file 'amp/descriptor/cutoffs.f90' (format:fix) Reading file 'amp/descriptor/zernike.f90' (format:free) Reading file 'amp/model.f90' (format:fix) ::image_forces ::integer_one_d_array ::embedded_real_one_one_d_array ::embedded_real_one_two_d_array ::embedded_integer_one_one_d_array ::embedded_one_one_two_d_array Post-processing... Block: fmodules Block: neuralnetwork Block: real_two_d_array Block: element_parameters Block: real_one_d_array Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Block: calculate_g2 In: :fmodules:amp/descriptor/gaussian.f90:calculate_g2 get_useparameters: no module cutoffs info used by calculate_g2 Block: calculate_g4 In: :fmodules:amp/descriptor/gaussian.f90:calculate_g4 get_useparameters: no module cutoffs info used by calculate_g4 Block: calculate_g2_prime In: :fmodules:amp/descriptor/gaussian.f90:calculate_g2_prime get_useparameters: no module cutoffs info used by calculate_g2_prime Block: calculate_g4_prime In: :fmodules:amp/descriptor/gaussian.f90:calculate_g4_prime get_useparameters: no module cutoffs info used by calculate_g4_prime Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: check_version Block: fingerprint_props Block: model_props Block: images_props {} In: :fmodules:amp/model.f90:calculate_loss:calculate_energy vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_forces vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_numerical_denergy_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_dforces_dparameters vars2fortran: No typespec for argument "image_no". {} In: :fmodules:amp/model.f90:calculate_loss:calculate_numerical_dforces_dparameters vars2fortran: No typespec for argument "image_no". Block: calculate_loss Block: image_forces Block: integer_one_d_array Block: embedded_real_one_one_d_array Block: embedded_real_one_two_d_array Block: embedded_integer_one_one_d_array Block: embedded_one_one_two_d_array Block: deallocate_variables Applying post-processing hooks... character_backward_compatibility_hook Post-processing (stage 2)... Block: fmodules Block: unknown_interface Block: neuralnetwork Block: real_two_d_array Block: element_parameters Block: real_one_d_array Block: calculate_image_energy Block: calculate_atomic_energy Block: calculate_force_ Block: calculate_force Block: calculate_denergy_dparameters_ Block: calculate_datomicenergy_dparameters Block: calculate_dforce_dparameters_ Block: calculate_dforce_dparameters Block: calculate_g2 Block: calculate_g4 Block: calculate_g2_prime Block: calculate_g4_prime Block: cutoffs Block: cutoff_fxn Block: cutoff_fxn_prime Block: calculate_zernike_prime Block: calculate_z Block: calculate_z_prime Block: calculate_q Block: binomial Block: check_version Block: fingerprint_props Block: model_props Block: images_props Block: calculate_loss Block: image_forces Block: integer_one_d_array Block: embedded_real_one_one_d_array Block: embedded_real_one_two_d_array Block: embedded_integer_one_one_d_array Block: embedded_one_one_two_d_array Block: deallocate_variables Building modules... Building module "fmodules"... Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g2"... ridge = calculate_g2(neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,ri,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g4"... ridge = calculate_g4(neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,ri,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g2_prime"... ridge = calculate_g2_prime(neighborindices,neighbornumbers,neighborpositions,g_number,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_g4_prime"... ridge = calculate_g4_prime(neighborindices,neighbornumbers,neighborpositions,g_numbers,g_gamma,g_zeta,g_eta,rc,cutofffn,i,ri,m,l,[p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_zernike_prime"... norm_prime = calculate_zernike_prime(n,l,n_indices,numbers,rs,g_numbers,cutoff,indexx,home,p,q,factorial,cutofffn,[n_length,fac_length,p_gamma]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_z"... output = calculate_z(n,l,m,x,y,z,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_z_prime"... output = calculate_z_prime(n,l,m,x,y,z,p,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_q"... output = calculate_q(nu,k,l,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "binomial"... output = binomial(n,k,factorial,[length]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "check_version"... warning = check_version(version) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "calculate_loss"... loss,dloss_dparameters,energyloss,forceloss,energy_maxresid,force_maxresid = calculate_loss(parameters,lossprime,[num_parameters]) Generating possibly empty wrappers" Maybe empty "fmodules-f2pywrappers.f" Constructing wrapper function "deallocate_variables"... deallocate_variables() Constructing F90 module support for "neuralnetwork"... Variables: min_fingerprints max_fingerprints no_layers_of_elements no_nodes_of_elements activation_signal getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' f90mod_rules.buildhooks: skipping type real_two_d_array f90mod_rules.buildhooks: skipping type element_parameters f90mod_rules.buildhooks: skipping type real_one_d_array Creating wrapper for Fortran function "calculate_image_energy"("calculate_image_energy")... Constructing wrapper function "neuralnetwork.calculate_image_energy"... calculate_image_energy = calculate_image_energy(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_atomic_energy"("calculate_atomic_energy")... Constructing wrapper function "neuralnetwork.calculate_atomic_energy"... calculate_atomic_energy = calculate_atomic_energy(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_force_"("calculate_force_")... Constructing wrapper function "neuralnetwork.calculate_force_"... calculate_force_ = calculate_force_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_force"("calculate_force")... Constructing wrapper function "neuralnetwork.calculate_force"... calculate_force = calculate_force(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_denergy_dparameters_"("calculate_denergy_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_denergy_dparameters_"... calculate_denergy_dparameters_ = calculate_denergy_dparameters_(inputs,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_datomicenergy_dparameters"("calculate_datomicenergy_dparameters")... Constructing wrapper function "neuralnetwork.calculate_datomicenergy_dparameters"... calculate_datomicenergy_dparameters = calculate_datomicenergy_dparameters(symbol,fingerprint,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters_"("calculate_dforce_dparameters_")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters_"... calculate_dforce_dparameters_ = calculate_dforce_dparameters_(inputs,inputs_,parameters,[num_inputs,num_parameters]) Creating wrapper for Fortran function "calculate_dforce_dparameters"("calculate_dforce_dparameters")... Constructing wrapper function "neuralnetwork.calculate_dforce_dparameters"... calculate_dforce_dparameters = calculate_dforce_dparameters(symbol,fingerprint,fingerprintprime,elements_numbers,parameters,[len_of_fingerprint,num_elements,num_parameters]) Constructing F90 module support for "cutoffs"... Creating wrapper for Fortran function "cutoff_fxn"("cutoff_fxn")... Constructing wrapper function "cutoffs.cutoff_fxn"... cutoff_fxn = cutoff_fxn(r,rc,cutofffn,[p_gamma]) Creating wrapper for Fortran function "cutoff_fxn_prime"("cutoff_fxn_prime")... Constructing wrapper function "cutoffs.cutoff_fxn_prime"... cutoff_fxn_prime = cutoff_fxn_prime(r,rc,cutofffn,[p_gamma]) Constructing F90 module support for "fingerprint_props"... Variables: num_fingerprints_of_elements raveled_fingerprints raveled_fingerprintprimes getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Constructing F90 module support for "model_props"... Variables: mode_signal train_forces energy_coefficient force_coefficient overfit numericprime d Constructing F90 module support for "images_props"... Variables: num_images num_elements elements_numbers num_images_atoms atomic_numbers num_neighbors raveled_neighborlists actual_energies actual_forces num_atoms atomic_positions getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' getarrdims:warning: assumed shape array, using 0 instead of ':' Wrote C/API module "fmodules" to file "build/src.linux-x86_64-3.11/amp/fmodulesmodule.c" Fortran 90 wrappers are saved to "build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90" INFO: adding 'build/src.linux-x86_64-3.11/build/src.linux-x86_64-3.11/amp/fortranobject.c' to sources. INFO: adding 'build/src.linux-x86_64-3.11/build/src.linux-x86_64-3.11/amp' to include_dirs. creating build/src.linux-x86_64-3.11/build creating build/src.linux-x86_64-3.11/build/src.linux-x86_64-3.11 creating build/src.linux-x86_64-3.11/build/src.linux-x86_64-3.11/amp copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-x86_64-3.11/build/src.linux-x86_64-3.11/amp copying /usr/lib/python3/dist-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-x86_64-3.11/build/src.linux-x86_64-3.11/amp INFO: adding 'build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers.f' to sources. INFO: adding 'build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90' to sources. INFO: build_src: building npy-pkg config files /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build_py creating /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp copying amp/utilities.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp copying amp/analysis.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp copying amp/__init__.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp creating /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/zernike.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/gaussian.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/example.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/cutoffs.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/bispectrum.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/analysis.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor copying amp/descriptor/__init__.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor creating /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/regression copying amp/regression/__init__.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/regression creating /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model copying amp/model/tflow.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model copying amp/model/neuralnetwork.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model copying amp/model/__main__.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model copying amp/model/__init__.py -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model copying amp/VERSION -> /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp running build_ext INFO: customize UnixCCompiler INFO: customize UnixCCompiler using build_ext INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-march=native) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating /tmp/tmpeupmenl7/usr creating /tmp/tmpeupmenl7/usr/lib creating /tmp/tmpeupmenl7/usr/lib/python3 creating /tmp/tmpeupmenl7/usr/lib/python3/dist-packages creating /tmp/tmpeupmenl7/usr/lib/python3/dist-packages/numpy creating /tmp/tmpeupmenl7/usr/lib/python3/dist-packages/numpy/distutils creating /tmp/tmpeupmenl7/usr/lib/python3/dist-packages/numpy/distutils/checks INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-march=native' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-O3) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-O3' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-Werror) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-Werror' INFO: CCompilerOpt.__init__[1786] : check requested baseline INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-msse) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-msse2) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse2' INFO: CCompilerOpt.feature_test[1551] : testing feature 'SSE' with flags (-msse -msse2) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse -msse2 -Werror' INFO: CCompilerOpt.feature_test[1551] : testing feature 'SSE2' with flags (-msse -msse2) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse -msse2 -Werror' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-msse3) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse3' INFO: CCompilerOpt.feature_test[1551] : testing feature 'SSE3' with flags (-msse -msse2 -msse3) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse -msse2 -msse3 -Werror' INFO: CCompilerOpt.__init__[1795] : check requested dispatch-able features INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-mssse3) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-mssse3' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-msse4.1) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse4.1' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-mpopcnt) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-mpopcnt' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-msse4.2) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse4.2' INFO: CCompilerOpt.feature_test[1551] : testing feature 'SSE42' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -Werror' INFO: CCompilerOpt.feature_test[1551] : testing feature 'POPCNT' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -Werror' INFO: CCompilerOpt.feature_test[1551] : testing feature 'SSSE3' with flags (-msse -msse2 -msse3 -mssse3) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse -msse2 -msse3 -mssse3 -Werror' INFO: CCompilerOpt.feature_test[1551] : testing feature 'SSE41' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -Werror' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-mavx) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-mavx' INFO: CCompilerOpt.feature_test[1551] : testing feature 'AVX' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -Werror' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-mf16c) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-mf16c' INFO: CCompilerOpt.feature_test[1551] : testing feature 'F16C' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -Werror' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-mavx2) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-mavx2' INFO: CCompilerOpt.feature_test[1551] : testing feature 'AVX2' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mavx2) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mavx2 -Werror' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-mfma) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-mfma' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-mavx512f -mno-mmx) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-mavx512f -mno-mmx' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-mavx512cd) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-mavx512cd' INFO: CCompilerOpt.feature_test[1551] : testing feature 'AVX512CD' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mno-mmx -mavx512cd) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mno-mmx -mavx512cd -Werror' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-mavx512vl -mavx512bw -mavx512dq) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-mavx512vl -mavx512bw -mavx512dq' INFO: CCompilerOpt.feature_test[1551] : testing feature 'AVX512_SKX' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mno-mmx -mavx512cd -mavx512vl -mavx512bw -mavx512dq) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mno-mmx -mavx512cd -mavx512vl -mavx512bw -mavx512dq -Werror' INFO: CCompilerOpt.feature_test[1551] : testing feature 'FMA3' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -Werror' INFO: CCompilerOpt.feature_test[1551] : testing feature 'AVX512F' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mno-mmx) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mno-mmx -Werror' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-mavx512vnni) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-mavx512vnni' INFO: CCompilerOpt.feature_test[1551] : testing feature 'AVX512_CLX' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mno-mmx -mavx512cd -mavx512vl -mavx512bw -mavx512dq -mavx512vnni) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mno-mmx -mavx512cd -mavx512vl -mavx512bw -mavx512dq -mavx512vnni -Werror' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-mavx512ifma -mavx512vbmi) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-mavx512ifma -mavx512vbmi' INFO: CCompilerOpt.feature_test[1551] : testing feature 'AVX512_CNL' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mno-mmx -mavx512cd -mavx512vl -mavx512bw -mavx512dq -mavx512ifma -mavx512vbmi) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mno-mmx -mavx512cd -mavx512vl -mavx512bw -mavx512dq -mavx512ifma -mavx512vbmi -Werror' INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-mavx512er -mavx512pf) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-mavx512er -mavx512pf' INFO: CCompilerOpt.feature_test[1551] : testing feature 'AVX512_KNL' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mno-mmx -mavx512cd -mavx512er -mavx512pf) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mno-mmx -mavx512cd -mavx512er -mavx512pf -Werror' WARN: CCompilerOpt.dist_test[630] : CCompilerOpt._dist_test_spawn[764] : Command (x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c /usr/lib/python3/dist-packages/numpy/distutils/checks/cpu_avx512_knl.c -o /tmp/tmpeupmenl7/usr/lib/python3/dist-packages/numpy/distutils/checks/cpu_avx512_knl.o -MMD -MF /tmp/tmpeupmenl7/usr/lib/python3/dist-packages/numpy/distutils/checks/cpu_avx512_knl.o.d -msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mno-mmx -mavx512cd -mavx512er -mavx512pf -Werror) failed with exit status 1 output -> In file included from /usr/lib/gcc/x86_64-linux-gnu/12/include/immintrin.h:51, from /usr/lib/python3/dist-packages/numpy/distutils/checks/cpu_avx512_knl.c:14: In function '_mm512_exp2a23_round_pd', inlined from 'main' at /usr/lib/python3/dist-packages/numpy/distutils/checks/cpu_avx512_knl.c:21:17: /usr/lib/gcc/x86_64-linux-gnu/12/include/avx512erintrin.h:55:20: error: '__W' is used uninitialized [-Werror=uninitialized] 55 | return (__m512d) __builtin_ia32_exp2pd_mask ((__v8df) __A, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | (__v8df) __W, | ~~~~~~~~~~~~~ 57 | (__mmask8) -1, __R); | ~~~~~~~~~~~~~~~~~~~ /usr/lib/gcc/x86_64-linux-gnu/12/include/avx512erintrin.h: In function 'main': /usr/lib/gcc/x86_64-linux-gnu/12/include/avx512erintrin.h:54:11: note: '__W' was declared here 54 | __m512d __W; | ^~~ In file included from /usr/lib/gcc/x86_64-linux-gnu/12/include/immintrin.h:53: In function '_mm512_mask_prefetch_i64scatter_pd', inlined from 'main' at /usr/lib/python3/dist-packages/numpy/distutils/checks/cpu_avx512_knl.c:23:5: /usr/lib/gcc/x86_64-linux-gnu/12/include/avx512pfintrin.h:180:3: error: 'base' may be used uninitialized [-Werror=maybe-uninitialized] 180 | __builtin_ia32_scatterpfqpd (__mask, (__v8di) __index, __addr, __scale, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 | __hint); | ~~~~~~~ : In function 'main': : note: by argument 3 of type 'const void *' to '__builtin_ia32_scatterpfqpd' declared here /usr/lib/python3/dist-packages/numpy/distutils/checks/cpu_avx512_knl.c:18:9: note: 'base' declared here 18 | int base[128]; | ^~~~ cc1: all warnings being treated as errors WARN: CCompilerOpt.feature_test[1567] : testing failed INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-mavx512vbmi2 -mavx512bitalg -mavx512vpopcntdq) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-mavx512vbmi2 -mavx512bitalg -mavx512vpopcntdq' INFO: CCompilerOpt.feature_test[1551] : testing feature 'AVX512_ICL' with flags (-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mno-mmx -mavx512cd -mavx512vl -mavx512bw -mavx512dq -mavx512vnni -mavx512ifma -mavx512vbmi -mavx512vbmi2 -mavx512bitalg -mavx512vpopcntdq) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mno-mmx -mavx512cd -mavx512vl -mavx512bw -mavx512dq -mavx512vnni -mavx512ifma -mavx512vbmi -mavx512vbmi2 -mavx512bitalg -mavx512vpopcntdq -Werror' INFO: CCompilerOpt.__init__[1807] : skip features (SSE2 SSE SSE3) since its part of baseline INFO: CCompilerOpt.__init__[1811] : initialize targets groups INFO: CCompilerOpt.__init__[1813] : parse target group simd_test INFO: CCompilerOpt._parse_target_tokens[2024] : skip targets (VSX2 XOP VSX4 VSX VX VSX3 VXE2 FMA4 ASIMD VXE NEON) not part of baseline or dispatch-able features INFO: CCompilerOpt._parse_policy_not_keepbase[2136] : skip baseline features (SSE2) INFO: CCompilerOpt.generate_dispatch_header[2357] : generate CPU dispatch header: (build/src.linux-x86_64-3.11/numpy/distutils/include/npy_cpu_dispatch_config.h) WARN: CCompilerOpt.generate_dispatch_header[2366] : dispatch header dir build/src.linux-x86_64-3.11/numpy/distutils/include does not exist, creating it INFO: CCompilerOpt.feature_extra_checks[1631] : Testing extra checks for feature 'AVX512F' (AVX512F_REDUCE) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mno-mmx -Werror' INFO: CCompilerOpt.feature_extra_checks[1631] : Testing extra checks for feature 'AVX512_SKX' (AVX512BW_MASK AVX512DQ_MASK) INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mno-mmx -mavx512cd -mavx512vl -mavx512bw -mavx512dq -Werror' INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC INFO: compile options: '-I/usr/include/python3.11 -c' extra options: '-msse -msse2 -msse3 -mssse3 -msse4.1 -mpopcnt -msse4.2 -mavx -mf16c -mfma -mavx2 -mavx512f -mno-mmx -mavx512cd -mavx512vl -mavx512bw -mavx512dq -Werror' INFO: get_default_fcompiler: matching types: '['arm', 'gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' INFO: customize ArmFlangCompiler WARN: Could not locate executable armflang INFO: customize Gnu95FCompiler INFO: Found executable /usr/bin/gfortran INFO: customize Gnu95FCompiler INFO: customize Gnu95FCompiler using build_ext INFO: building 'amp.fmodules' extension INFO: compiling C sources INFO: C compiler: x86_64-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC creating build/temp.linux-x86_64-cpython-311/build creating build/temp.linux-x86_64-cpython-311/build/src.linux-x86_64-3.11 creating build/temp.linux-x86_64-cpython-311/build/src.linux-x86_64-3.11/amp creating build/temp.linux-x86_64-cpython-311/build/src.linux-x86_64-3.11/build creating build/temp.linux-x86_64-cpython-311/build/src.linux-x86_64-3.11/build/src.linux-x86_64-3.11 creating build/temp.linux-x86_64-cpython-311/build/src.linux-x86_64-3.11/build/src.linux-x86_64-3.11/amp INFO: compile options: '-Ibuild/src.linux-x86_64-3.11/build/src.linux-x86_64-3.11/amp -I/usr/lib/python3/dist-packages/numpy/core/include -Ibuild/src.linux-x86_64-3.11/numpy/distutils/include -I/usr/include/python3.11 -c' extra options: '-msse -msse2 -msse3' INFO: x86_64-linux-gnu-gcc: build/src.linux-x86_64-3.11/amp/fmodulesmodule.c INFO: x86_64-linux-gnu-gcc: build/src.linux-x86_64-3.11/build/src.linux-x86_64-3.11/amp/fortranobject.c build/src.linux-x86_64-3.11/amp/fmodulesmodule.c: In function 'f2py_setup_neuralnetwork': build/src.linux-x86_64-3.11/amp/fmodulesmodule.c:4185:41: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4185 | f2py_neuralnetwork_def[i_f2py++].func = min_fingerprints; | ^ build/src.linux-x86_64-3.11/amp/fmodulesmodule.c:4186:41: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4186 | f2py_neuralnetwork_def[i_f2py++].func = max_fingerprints; | ^ build/src.linux-x86_64-3.11/amp/fmodulesmodule.c:4187:41: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4187 | f2py_neuralnetwork_def[i_f2py++].func = no_layers_of_elements; | ^ build/src.linux-x86_64-3.11/amp/fmodulesmodule.c:4188:41: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4188 | f2py_neuralnetwork_def[i_f2py++].func = no_nodes_of_elements; | ^ build/src.linux-x86_64-3.11/amp/fmodulesmodule.c: In function 'f2py_setup_fingerprint_props': build/src.linux-x86_64-3.11/amp/fmodulesmodule.c:4231:45: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4231 | f2py_fingerprint_props_def[i_f2py++].func = num_fingerprints_of_elements; | ^ build/src.linux-x86_64-3.11/amp/fmodulesmodule.c:4232:45: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4232 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprints; | ^ build/src.linux-x86_64-3.11/amp/fmodulesmodule.c:4233:45: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4233 | f2py_fingerprint_props_def[i_f2py++].func = raveled_fingerprintprimes; | ^ build/src.linux-x86_64-3.11/amp/fmodulesmodule.c: In function 'f2py_setup_images_props': build/src.linux-x86_64-3.11/amp/fmodulesmodule.c:4287:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4287 | f2py_images_props_def[i_f2py++].func = elements_numbers; | ^ build/src.linux-x86_64-3.11/amp/fmodulesmodule.c:4288:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4288 | f2py_images_props_def[i_f2py++].func = num_images_atoms; | ^ build/src.linux-x86_64-3.11/amp/fmodulesmodule.c:4289:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4289 | f2py_images_props_def[i_f2py++].func = atomic_numbers; | ^ build/src.linux-x86_64-3.11/amp/fmodulesmodule.c:4290:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4290 | f2py_images_props_def[i_f2py++].func = num_neighbors; | ^ build/src.linux-x86_64-3.11/amp/fmodulesmodule.c:4291:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4291 | f2py_images_props_def[i_f2py++].func = raveled_neighborlists; | ^ build/src.linux-x86_64-3.11/amp/fmodulesmodule.c:4292:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4292 | f2py_images_props_def[i_f2py++].func = actual_energies; | ^ build/src.linux-x86_64-3.11/amp/fmodulesmodule.c:4293:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4293 | f2py_images_props_def[i_f2py++].func = actual_forces; | ^ build/src.linux-x86_64-3.11/amp/fmodulesmodule.c:4295:40: warning: assignment to 'f2py_init_func' {aka 'void (*)(int *, long int *, void (*)(char *, long int *), int *)'} from incompatible pointer type 'void (*)(int *, int *, void (*)(char *, int *), int *)' [-Wincompatible-pointer-types] 4295 | f2py_images_props_def[i_f2py++].func = atomic_positions; | ^ INFO: compiling Fortran 90 module sources creating build/temp.linux-x86_64-cpython-311/amp INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops creating build/temp.linux-x86_64-cpython-311/amp/model creating build/temp.linux-x86_64-cpython-311/amp/descriptor INFO: compile options: '-Ibuild/src.linux-x86_64-3.11/build/src.linux-x86_64-3.11/amp -I/usr/lib/python3/dist-packages/numpy/core/include -Ibuild/src.linux-x86_64-3.11/numpy/distutils/include -I/usr/include/python3.11 -c' extra options: '-Jbuild/temp.linux-x86_64-cpython-311/amp -Ibuild/temp.linux-x86_64-cpython-311/amp' INFO: gfortran:f90: amp/model/neuralnetwork.f90 amp/model/neuralnetwork.f90:1379:2: 1379 | unraveled_dforce_dweights(layer)%twodarray(p, q) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1380:2: 1380 | -1.0d0 * unraveled_dforce_dweights(layer)%twodarray(p, q) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1767:2: 1767 | unraveled_dforce_dparameters(element)%slope = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1768:2: 1768 | -1.0d0 * unraveled_dforce_dparameters(element)%slope | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model/neuralnetwork.f90:1802:2: 1802 | unraveled_dforce_dparameters(element)%weights(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] INFO: gfortran:f90: amp/descriptor/cutoffs.f90 INFO: gfortran:f90: amp/model.f90 amp/model.f90:219:2: 219 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:220:2: 220 | denergy_dparameters(j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:221:2: 221 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:269:2: 269 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:270:2: 270 | allocate(dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:271:2: 271 | selfindex)%twodarray(3, num_parameters)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:272:2: 272 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:273:2: 273 | do j = 1, num_parameters | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:274:2: 274 | dforces_dparameters(& | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:275:2: 275 | selfindex)%twodarray(i, j) = 0.0d0 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:276:2: 276 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:277:2: 277 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:278:2: 278 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:300:2: 300 | do p = 1, size(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:301:2: 301 | deallocate(dforces_dparameters(p)%twodarray) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:302:2: 302 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:303:2: 303 | deallocate(dforces_dparameters) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:323:2: 323 | doverfitloss_dparameters(j) = & | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:646:2: 646 | allocate(fplus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:647:2: 647 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:648:2: 648 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:649:2: 649 | fplus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:650:2: 650 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:651:2: 651 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:655:2: 655 | allocate(fminus(num_atoms, 3)) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:656:2: 656 | do selfindex = 1, num_atoms | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:657:2: 657 | do i = 1, 3 | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:658:2: 658 | fminus(selfindex, i) = amp_forces(selfindex, i) | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:659:2: 659 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] amp/model.f90:660:2: 660 | end do | 1 Warning: Nonconforming tab character at (1) [-Wtabs] INFO: compiling Fortran sources INFO: Fortran f77 compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/bin/gfortran -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/bin/gfortran -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/amp-0.6.1=. -fstack-protector-strong -fPIC -O3 -funroll-loops INFO: compile options: '-Ibuild/src.linux-x86_64-3.11/build/src.linux-x86_64-3.11/amp -I/usr/lib/python3/dist-packages/numpy/core/include -Ibuild/src.linux-x86_64-3.11/numpy/distutils/include -I/usr/include/python3.11 -c' extra options: '-Jbuild/temp.linux-x86_64-cpython-311/amp -Ibuild/temp.linux-x86_64-cpython-311/amp' INFO: gfortran:f90: amp/descriptor/gaussian.f90 INFO: gfortran:f90: amp/descriptor/zernike.f90 INFO: gfortran:f90: build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90 build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90:141:63: 141 | subroutine f2pywrap_neuralnetwork_calculate_atomic_energy (calcula& | 1 ...... 272 | subroutine f2pywrap_neuralnetwork_calculate_atomic_energy (calcula& | 2 Warning: Type mismatch in argument 'calculate_atomic_energy' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90:202:9: 202 | &ers (calculate_datomicenergy_dparametersf2pywrap, symbol, len_of_f& | 1 ...... 325 | &ers (calculate_datomicenergy_dparametersf2pywrap, calculate_datomi& | 2 Warning: Type mismatch in argument 'calculate_datomicenergy_dparameters' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90:187:70: 187 | subroutine f2pywrap_neuralnetwork_calculate_denergy_dparameters_ (& | 1 ...... 312 | subroutine f2pywrap_neuralnetwork_calculate_denergy_dparameters_ (& | 2 Warning: Type mismatch in argument 'calculate_denergy_dparameters_' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90:235:68: 235 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters (ca& | 1 ...... 354 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters (ca& | 2 Warning: Type mismatch in argument 'calculate_dforce_dparameters' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90:220:69: 220 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters_ (c& | 1 ...... 341 | subroutine f2pywrap_neuralnetwork_calculate_dforce_dparameters_ (c& | 2 Warning: Type mismatch in argument 'calculate_dforce_dparameters_' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90:170:55: 170 | subroutine f2pywrap_neuralnetwork_calculate_force (calculate_force& | 1 ...... 297 | subroutine f2pywrap_neuralnetwork_calculate_force (calculate_force& | 2 Warning: Type mismatch in argument 'calculate_force' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90:157:56: 157 | subroutine f2pywrap_neuralnetwork_calculate_force_ (calculate_forc& | 1 ...... 286 | subroutine f2pywrap_neuralnetwork_calculate_force_ (calculate_forc& | 2 Warning: Type mismatch in argument 'calculate_force_' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90:129:62: 129 | subroutine f2pywrap_neuralnetwork_calculate_image_energy (calculat& | 1 ...... 262 | subroutine f2pywrap_neuralnetwork_calculate_image_energy (calculat& | 2 Warning: Type mismatch in argument 'calculate_image_energy' (REAL(8)/INTEGER(4)) between (1) and (2) build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90:388:44: 388 | subroutine f2pywrap_cutoffs_cutoff_fxn (cutoff_fxnf2pywrap, r, rc,& | 1 ...... 412 | subroutine f2pywrap_cutoffs_cutoff_fxn (cutoff_fxnf2pywrap, cutoff& | 2 Warning: Type mismatch in argument 'rc' (REAL(8)/CHARACTER(20)) between (1) and (2) build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90:398:50: 398 | subroutine f2pywrap_cutoffs_cutoff_fxn_prime (cutoff_fxn_primef2py& | 1 ...... 421 | subroutine f2pywrap_cutoffs_cutoff_fxn_prime (cutoff_fxn_primef2py& | 2 Warning: Type mismatch in argument 'rc' (REAL(8)/CHARACTER(20)) between (1) and (2) build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'max_fingerprints' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'min_fingerprints' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'no_layers_of_elements' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90:256:10: 256 | use neuralnetwork, only : min_fingerprints | 1 Warning: Unused module variable 'no_nodes_of_elements' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90:533:10: 533 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable 'num_fingerprints_of_elements' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90:533:10: 533 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable 'raveled_fingerprintprimes' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90:533:10: 533 | use fingerprint_props, only : num_fingerprints_of_elements | 1 Warning: Unused module variable 'raveled_fingerprints' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'actual_energies' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'actual_forces' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'atomic_numbers' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'atomic_positions' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'elements_numbers' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'num_images_atoms' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'num_neighbors' which has been explicitly imported at (1) [-Wunused-variable] build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90:810:10: 810 | use images_props, only : num_images | 1 Warning: Unused module variable 'raveled_neighborlists' which has been explicitly imported at (1) [-Wunused-variable] INFO: gfortran:f77: build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers.f INFO: /usr/bin/gfortran -Wall -g -Wall -g -shared -Wl,-z,relro -Wl,-z,now -shared build/temp.linux-x86_64-cpython-311/build/src.linux-x86_64-3.11/amp/fmodulesmodule.o build/temp.linux-x86_64-cpython-311/build/src.linux-x86_64-3.11/build/src.linux-x86_64-3.11/amp/fortranobject.o build/temp.linux-x86_64-cpython-311/amp/model/neuralnetwork.o build/temp.linux-x86_64-cpython-311/amp/descriptor/cutoffs.o build/temp.linux-x86_64-cpython-311/amp/model.o build/temp.linux-x86_64-cpython-311/amp/descriptor/gaussian.o build/temp.linux-x86_64-cpython-311/amp/descriptor/zernike.o build/temp.linux-x86_64-cpython-311/build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers.o build/temp.linux-x86_64-cpython-311/build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.o -L/usr/lib/gcc/x86_64-linux-gnu/12 -L/usr/lib/gcc/x86_64-linux-gnu/12 -L/usr/lib/x86_64-linux-gnu -lgfortran -o /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/fmodules.cpython-311-x86_64-linux-gnu.so INFO: ########### EXT COMPILER OPTIMIZATION ########### INFO: Platform : Architecture: x64 Compiler : gcc CPU baseline : Requested : 'min' Enabled : SSE SSE2 SSE3 Flags : -msse -msse2 -msse3 Extra checks: none CPU dispatch : Requested : 'max -xop -fma4' Enabled : SSSE3 SSE41 POPCNT SSE42 AVX F16C FMA3 AVX2 AVX512F AVX512CD AVX512_SKX AVX512_CLX AVX512_CNL AVX512_ICL Generated : none INFO: CCompilerOpt.cache_flush[857] : write cache to path -> /build/reproducible-path/amp-0.6.1/build/temp.linux-x86_64-cpython-311/ccompiler_opt_cache_ext.py debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/amp-0.6.1' PYBUILD_SYSTEM=custom \ PYBUILD_TEST_ARGS="cd {build_dir}; {interpreter} /usr/bin/nosetests3 tests" \ dh_auto_test make[1]: Leaving directory '/build/reproducible-path/amp-0.6.1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-amp/ -O--buildsystem=pybuild I: pybuild base:240: /usr/bin/python3 setup.py install --root /build/reproducible-path/amp-0.6.1/debian/python3-amp /build/reproducible-path/amp-0.6.1/setup.py:4: DeprecationWarning: `numpy.distutils` is deprecated since NumPy 1.23.0, as a result of the deprecation of `distutils` itself. It will be removed for Python >= 3.12. For older Python versions it will remain present. It is recommended to use `setuptools < 60.0` for those Python versions. For more details, see: https://numpy.org/devdocs/reference/distutils_status_migration.html from numpy.distutils.core import Extension, setup running install /usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running config_cc INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src INFO: build_src INFO: building extension "amp.fmodules" sources INFO: f2py options: [] INFO: adding 'build/src.linux-x86_64-3.11/build/src.linux-x86_64-3.11/amp/fortranobject.c' to sources. INFO: adding 'build/src.linux-x86_64-3.11/build/src.linux-x86_64-3.11/amp' to include_dirs. INFO: adding 'build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers.f' to sources. INFO: adding 'build/src.linux-x86_64-3.11/amp/fmodules-f2pywrappers2.f90' to sources. INFO: build_src: building npy-pkg config files running build_py running build_ext INFO: customize UnixCCompiler INFO: customize UnixCCompiler using build_ext INFO: CCompilerOpt.__init__[813] : load cache from file -> /build/reproducible-path/amp-0.6.1/build/temp.linux-x86_64-cpython-311/ccompiler_opt_cache_ext.py INFO: CCompilerOpt.__init__[824] : hit the file cache INFO: get_default_fcompiler: matching types: '['arm', 'gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' INFO: customize ArmFlangCompiler WARN: Could not locate executable armflang INFO: customize Gnu95FCompiler INFO: Found executable /usr/bin/gfortran INFO: customize Gnu95FCompiler INFO: customize Gnu95FCompiler using build_ext running install_lib creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11 creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/fmodules.cpython-311-x86_64-linux-gnu.so -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/VERSION -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model/__init__.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model/__main__.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model/neuralnetwork.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/model/tflow.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/regression copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/regression/__init__.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/regression creating /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor/__init__.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor/analysis.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor/bispectrum.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor/cutoffs.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor/example.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor/gaussian.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/descriptor/zernike.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/__init__.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/analysis.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp copying /build/reproducible-path/amp-0.6.1/.pybuild/cpython3_3.11_amp/build/amp/utilities.py -> /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model/__main__.py to __main__.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model/neuralnetwork.py to neuralnetwork.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/model/tflow.py to tflow.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/regression/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/analysis.py to analysis.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/bispectrum.py to bispectrum.cpython-311.pyc /usr/lib/python3.11/dist-packages/amp/descriptor/bispectrum.py:398: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/dist-packages/amp/descriptor/bispectrum.py:400: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/cutoffs.py to cutoffs.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/example.py to example.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/gaussian.py to gaussian.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/descriptor/zernike.py to zernike.cpython-311.pyc /usr/lib/python3.11/dist-packages/amp/descriptor/zernike.py:569: SyntaxWarning: "is" with a literal. Did you mean "=="? /usr/lib/python3.11/dist-packages/amp/descriptor/zernike.py:571: SyntaxWarning: "is" with a literal. Did you mean "=="? byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/analysis.py to analysis.cpython-311.pyc byte-compiling /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp/utilities.py to utilities.cpython-311.pyc running install_egg_info running egg_info creating amp_atomistics.egg-info writing amp_atomistics.egg-info/PKG-INFO writing dependency_links to amp_atomistics.egg-info/dependency_links.txt writing requirements to amp_atomistics.egg-info/requires.txt writing top-level names to amp_atomistics.egg-info/top_level.txt writing manifest file 'amp_atomistics.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/egg_info.py:655: SetuptoolsDeprecationWarning: Custom 'build_py' does not implement 'get_data_files_without_manifest'. Please extend command classes from setuptools instead of distutils. warnings.warn( reading manifest file 'amp_atomistics.egg-info/SOURCES.txt' adding license file 'LICENSE' writing manifest file 'amp_atomistics.egg-info/SOURCES.txt' Copying amp_atomistics.egg-info to /build/reproducible-path/amp-0.6.1/debian/python3-amp/usr/lib/python3.11/dist-packages/amp_atomistics-0.6.1.egg-info Skipping SOURCES.txt running install_scripts running install_clib INFO: customize UnixCCompiler INFO: ########### EXT COMPILER OPTIMIZATION ########### INFO: Platform : Architecture: x64 Compiler : gcc CPU baseline : Requested : 'min' Enabled : SSE SSE2 SSE3 Flags : -msse -msse2 -msse3 Extra checks: none CPU dispatch : Requested : 'max -xop -fma4' Enabled : SSSE3 SSE41 POPCNT SSE42 AVX F16C FMA3 AVX2 AVX512F AVX512CD AVX512_SKX AVX512_CLX AVX512_CNL AVX512_ICL Generated : none INFO: CCompilerOpt.cache_flush[857] : write cache to path -> /build/reproducible-path/amp-0.6.1/build/temp.linux-x86_64-cpython-311/ccompiler_opt_cache_ext.py I: pybuild pybuild:333: cp -r '/build/reproducible-path/amp-0.6.1/tests' '/build/reproducible-path/amp-0.6.1/debian/python3-amp//usr/lib/python3.11/dist-packages/amp' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/amp-0.6.1' dh_python3 W: dh_python3 fs:147: Paths differ: debian/python3-amp/usr/lib/python3.11/dist-packages/amp/fmodules.cpython-311-x86_64-linux-gnu.so and debian/python3-amp/usr/lib/python3/dist-packages/amp/fmodules.cpython-311-x86_64-linux-gnu.so I: dh_python3 tools:114: replacing shebang in debian/python3-amp/usr/bin/amp-plotconvergence I: dh_python3 tools:114: replacing shebang in debian/python3-amp/usr/bin/amp-compress dh_numpy3 dh_fixperms make[1]: Leaving directory '/build/reproducible-path/amp-0.6.1' dh_installinit -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_strip -O--buildsystem=pybuild dh_makeshlibs -O--buildsystem=pybuild dh_shlibdeps -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Breaks field of package python3-amp: substitution variable ${python3:Breaks} used, but is not defined dpkg-gencontrol: warning: Breaks field of package python3-amp: substitution variable ${python3:Breaks} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-amp-dbgsym' in '../python3-amp-dbgsym_0.6.1-1_amd64.deb'. dpkg-deb: building package 'python3-amp' in '../python3-amp_0.6.1-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../amp_0.6.1-1_amd64.buildinfo dpkg-genchanges --build=binary -O../amp_0.6.1-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/881822 and its subdirectories I: Current time: Tue Jan 9 13:43:36 -12 2024 I: pbuilder-time-stamp: 1704851016 Wed Jan 10 01:43:37 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Wed Jan 10 01:43:37 UTC 2024 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Wed Jan 10 01:46:51 UTC 2024 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Wed Jan 10 01:46:52 UTC 2024 I: amp_0.6.1-1_amd64.changes: Format: 1.8 Date: Sun, 28 Oct 2018 16:05:16 +0100 Source: amp Binary: python3-amp python3-amp-dbgsym Architecture: amd64 Version: 0.6.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Mattia Rizzolo Description: python3-amp - Atomistic Machine-learning Package (python 3) Changes: amp (0.6.1-1) unstable; urgency=medium . * Team upload. . [ Muammar El Khatib ] * New upstream release. * Refresh patches. * Move Vcs-* fields to salsa.d.o. . [ Jelmer Vernooij ] * Use secure copyright file specification URI. . [ Mattia Rizzolo ] * Bump debhelper compat level to 11. * Rewrite the amp Makefile's patch to support building for arbitrary python versions. Checksums-Sha1: bcd8da4082baa0ea008d64ed254f4ab968199cde 9764 amp_0.6.1-1_amd64.buildinfo 05d7f5324d3b9568e98f245834765d7e6527e15d 356524 python3-amp-dbgsym_0.6.1-1_amd64.deb b97d52cf12f665388ca935b24742cc6c05ac1367 235556 python3-amp_0.6.1-1_amd64.deb Checksums-Sha256: 30bd90b8ad59fbf6f00c051e76328713b4b7a3ac9cf5fecb0db4b0c6e86dd088 9764 amp_0.6.1-1_amd64.buildinfo b8ce32e30ffbcf00cf2c90088bca6360bfb1229da0da115b5f20fecbd04067c5 356524 python3-amp-dbgsym_0.6.1-1_amd64.deb 0e25a5849c2b9823ac8e74e961b4238f40af4dc1f5cdd69e6272f93b001bc12d 235556 python3-amp_0.6.1-1_amd64.deb Files: 5328b0a8cf6b72d8df45cc055abd0162 9764 science optional amp_0.6.1-1_amd64.buildinfo e2a0dce2342635e9f65b5f8db5a260c0 356524 debug optional python3-amp-dbgsym_0.6.1-1_amd64.deb 6326a705f7a846dab144b235bac14a36 235556 science optional python3-amp_0.6.1-1_amd64.deb Wed Jan 10 01:46:52 UTC 2024 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.s3GYFBzq/amp_0.6.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.s3GYFBzq/amp_0.6.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.s3GYFBzq/amp_0.6.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.s3GYFBzq/b1/amp_0.6.1-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.s3GYFBzq/b2/amp_0.6.1-1_amd64.changes ## close_archive (total time: 0.002s) 0.002s 8 calls diffoscope.comparators.deb.DebContainer 0.000s 18 calls diffoscope.comparators.xz.XzContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 18.410s) 7.299s 117 calls diff 6.093s 959 calls readelf 4.613s 209 calls objdump 0.173s 2 calls objcopy 0.152s 18 calls xz 0.075s 22 calls strings 0.002s 1 call cmp 0.002s 1 call cmp (external) 0.001s 18 calls cmp (internal) ## compare_files (cumulative) (total time: 53.643s) 9.935s 1 call abc.DotChangesFile 9.921s 2 calls abc.DebFile 9.877s 4 calls abc.XzFile 9.687s 2 calls abc.DebDataTarFile 9.509s 2 calls abc.ElfFile 4.119s 10 calls diffoscope.comparators.elf.ElfCodeSection 0.435s 29 calls diffoscope.comparators.elf.ElfSection 0.071s 2 calls abc.TarFile 0.055s 3 calls diffoscope.comparators.elf.ElfStringSection 0.015s 1 call abc.TextFile 0.010s 2 calls abc.Md5sumsFile 0.008s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## container_extract (total time: 0.210s) 0.152s 18 calls diffoscope.comparators.xz.XzContainer 0.031s 86 calls diffoscope.comparators.deb.DebTarContainer 0.015s 22 calls diffoscope.comparators.deb.DebContainer 0.012s 20 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 0.135s) 0.135s 168 calls linediff ## has_same_content_as (total time: 0.005s) 0.002s 2 calls abc.DebDataTarFile 0.001s 6 calls abc.TextFile 0.000s 4 calls abc.Md5sumsFile 0.000s 2 calls abc.ElfFile 0.000s 2 calls abc.TarFile 0.000s 4 calls abc.XzFile 0.000s 2 calls abc.DebFile 0.000s 29 calls diffoscope.comparators.elf.ElfSection 0.000s 1 call abc.DotChangesFile 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 10 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 3 calls diffoscope.comparators.elf.ElfStringSection 0.000s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 10.750s) 10.750s 2 calls outputs 0.001s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 18 calls diffoscope.comparators.xz.XzContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 0.485s) 0.464s 1 call html 0.012s 1 call text 0.010s 1 call json ## recognizes (total time: 0.284s) 0.107s 1716 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.072s 768 calls diffoscope.comparators.utils.archive.ArchiveMember 0.047s 638 calls diffoscope.comparators.elf.ElfSection 0.023s 12 calls diffoscope.comparators.binary.FilesystemFile 0.019s 220 calls diffoscope.comparators.elf.ElfCodeSection 0.009s 216 calls diffoscope.comparators.debian.DebControlMember 0.005s 66 calls diffoscope.comparators.elf.ElfStringSection 0.002s 22 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.000s 32 calls abc.Md5sumsFile 0.000s 10 calls abc.DotChangesFile 0.000s 4 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink ## specialize (total time: 0.151s) 0.151s 67 calls specialize Wed Jan 10 01:47:04 UTC 2024 E: amp failed to build reproducibly in bookworm on amd64. Wed Jan 10 01:47:04 UTC 2024 E: diffoscope 240 found issues, please check https://tests.reproducible-builds.org/debian/dbd/bookworm/amd64/amp_0.6.1-1.diffoscope.html Wed Jan 10 01:47:05 UTC 2024 I: Submitting .buildinfo files to external archives: Wed Jan 10 01:47:05 UTC 2024 I: Submitting 12K b1/amp_0.6.1-1_amd64.buildinfo.asc Wed Jan 10 01:47:06 UTC 2024 I: Submitting 12K b2/amp_0.6.1-1_amd64.buildinfo.asc Wed Jan 10 01:47:07 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Jan 10 01:47:07 UTC 2024 I: Done submitting .buildinfo files. Wed Jan 10 01:47:07 UTC 2024 I: Removing signed amp_0.6.1-1_amd64.buildinfo.asc files: removed './b1/amp_0.6.1-1_amd64.buildinfo.asc' removed './b2/amp_0.6.1-1_amd64.buildinfo.asc'