I: pbuilder: network access will be disabled during build I: Current time: Tue Jul 1 16:18:46 +14 2025 I: pbuilder-time-stamp: 1751336326 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [openms_2.6.0+cleaned1-4.dsc] I: copying [./openms_2.6.0+cleaned1.orig.tar.gz] I: copying [./openms_2.6.0+cleaned1-4.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Dec 23 14:24:11 2023 gpgv: using RSA key BBBD45EA818AB86FF67E7285D3E17383CFA7FF06 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./openms_2.6.0+cleaned1-4.dsc: no acceptable signature found dpkg-source: info: extracting openms in openms-2.6.0+cleaned1 dpkg-source: info: unpacking openms_2.6.0+cleaned1.orig.tar.gz dpkg-source: info: unpacking openms_2.6.0+cleaned1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying sonameAndNameLinkSkipCmakeBuildSystem.patch dpkg-source: info: applying installDirsSettingsCmakeBuildSystem.patch dpkg-source: info: applying fix-glpk-version-check.patch dpkg-source: info: applying add_missing_boost_header.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/240904/tmp/hooks/D01_modify_environment starting debug: Running on infom02-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jul 1 02:19 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/240904/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/240904/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=1e10395be7234929bef2388339898ec2 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=240904 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DVd5M8D7/pbuilderrc_NKwt --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DVd5M8D7/b2 --logfile b2/build.log openms_2.6.0+cleaned1-4.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' I: uname -a Linux i-capture-the-hostname 6.7.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.7.12-1~bpo12+1 (2024-05-06) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 30 14:05 /bin -> usr/bin I: user script /srv/workspace/pbuilder/240904/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-exec (>= 0.3), dpkg-dev (>= 1.19.7), cmake (>= 3.1.2), libxerces-c-dev (>= 3.2.2), libeigen3-dev, libwildmagic-dev (>= 5.17), libboost-dev, libboost-iostreams-dev, libboost-date-time-dev, libboost-math-dev, libsqlite3-dev, libsvm-dev (>= 3.21), libglpk-dev (>= 4.65), zlib1g-dev (>= 1.2.7), libbz2-dev (>= 1.0.6), cppcheck (>= 1.54), qtbase5-dev (>= 5.11.3), libqt5opengl5-dev (>= 5.11.3), libqt5svg5-dev (>= 5.11.3), coinor-libcbc-dev (>= 2.9.9), coinor-libcgl-dev (>= 0.59.10), libhdf5-dev, imagemagick, doxygen (>= 1.8.13), graphviz, texlive-extra-utils, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-extra, texlive-font-utils, texlive-plain-generic, tex-gyre, ghostscript, texlive-fonts-recommended dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19717 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-exec (>= 0.3); however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on cmake (>= 3.1.2); however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libxerces-c-dev (>= 3.2.2); however: Package libxerces-c-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libwildmagic-dev (>= 5.17); however: Package libwildmagic-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-date-time-dev; however: Package libboost-date-time-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-math-dev; however: Package libboost-math-dev is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however: Package libsqlite3-dev is not installed. pbuilder-satisfydepends-dummy depends on libsvm-dev (>= 3.21); however: Package libsvm-dev is not installed. pbuilder-satisfydepends-dummy depends on libglpk-dev (>= 4.65); however: Package libglpk-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev (>= 1.2.7); however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev (>= 1.0.6); however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on cppcheck (>= 1.54); however: Package cppcheck is not installed. pbuilder-satisfydepends-dummy depends on qtbase5-dev (>= 5.11.3); however: Package qtbase5-dev is not installed. pbuilder-satisfydepends-dummy depends on libqt5opengl5-dev (>= 5.11.3); however: Package libqt5opengl5-dev is not installed. pbuilder-satisfydepends-dummy depends on libqt5svg5-dev (>= 5.11.3); however: Package libqt5svg5-dev is not installed. pbuilder-satisfydepends-dummy depends on coinor-libcbc-dev (>= 2.9.9); however: Package coinor-libcbc-dev is not installed. pbuilder-satisfydepends-dummy depends on coinor-libcgl-dev (>= 0.59.10); however: Package coinor-libcgl-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on imagemagick; however: Package imagemagick is not installed. pbuilder-satisfydepends-dummy depends on doxygen (>= 1.8.13); however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on graphviz; however: Package graphviz is not installed. pbuilder-satisfydepends-dummy depends on texlive-extra-utils; however: Package texlive-extra-utils is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-extra; however: Package texlive-fonts-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-font-utils; however: Package texlive-font-utils is not installed. pbuilder-satisfydepends-dummy depends on texlive-plain-generic; however: Package texlive-plain-generic is not installed. pbuilder-satisfydepends-dummy depends on tex-gyre; however: Package tex-gyre is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} coinor-libcbc-dev{a} coinor-libcbc3.1{a} coinor-libcgl-dev{a} coinor-libcgl1{a} coinor-libclp-dev{a} coinor-libclp1{a} coinor-libcoinutils-dev{a} coinor-libcoinutils3v5{a} coinor-libosi-dev{a} coinor-libosi1v5{a} cppcheck{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} graphviz{a} groff-base{a} hdf5-helpers{a} hicolor-icon-theme{a} icu-devtools{a} imagemagick{a} imagemagick-6-common{a} imagemagick-6.q16{a} intltool-debian{a} libabsl20230802{a} libaec-dev{a} libaec0{a} libamd3{a} libann0{a} libaom3{a} libapache-pom-java{a} libarchive-zip-perl{a} libarchive13t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libavif16{a} libblas-dev{a} libblas3{a} libboost-date-time-dev{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-math-dev{a} libboost-math1.83-dev{a} libboost-math1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libbsd0{a} libbtf2{a} libbz2-dev{a} libcairo2{a} libcamd3{a} libccolamd3{a} libcdt5{a} libcgraph6{a} libcholmod5{a} libclang-cpp16t64{a} libclang1-16t64{a} libcolamd3{a} libcom-err2{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2t64{a} libcurl3t64-gnutls{a} libcurl4-openssl-dev{a} libcurl4t64{a} libcxsparse4{a} libdatrie1{a} libdav1d7{a} libdbus-1-3{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libeigen3-dev{a} libelf1t64{a} libevdev2{a} libexpat1{a} libfftw3-double3{a} libfile-homedir-perl{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfmt9{a} libfontbox-java{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgbm1{a} libgd3{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglpk-dev{a} libglpk40{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgraphite2-3{a} libgs-common{a} libgs10{a} libgs10-common{a} libgssapi-krb5-2{a} libgts-0.7-5t64{a} libgudev-1.0-0{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-cpp-103-1t64{a} libhdf5-dev{a} libhdf5-fortran-102t64{a} libhdf5-hl-100t64{a} libhdf5-hl-cpp-100t64{a} libhdf5-hl-fortran-100t64{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libice6{a} libicu-dev{a} libicu72{a} libidn12{a} libijs-0.35{a} libinput-bin{a} libinput10{a} libjbig0{a} libjbig2dec0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libklu2{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblab-gamut1{a} liblapack-dev{a} liblapack3{a} liblcms2-2{a} libldap-2.5-0{a} libldl3{a} liblerc4{a} libllvm16t64{a} libllvm17t64{a} liblqr-1-0{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libmagickcore-6.q16-7t64{a} libmagickwand-6.q16-7t64{a} libmd4c0{a} libmime-charset-perl{a} libmpfi0{a} libmtdev1t64{a} libnghttp2-14{a} libopengl-dev{a} libopengl0{a} libopenjp2-7{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparu0{a} libpathplan4{a} libpciaccess0{a} libpcre2-16-0{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng16-16t64{a} libpotrace0{a} libproc2-0{a} libpsl5t64{a} libptexenc1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqt5concurrent5t64{a} libqt5core5t64{a} libqt5dbus5t64{a} libqt5gui5t64{a} libqt5network5t64{a} libqt5opengl5-dev{a} libqt5opengl5t64{a} libqt5printsupport5t64{a} libqt5sql5t64{a} libqt5svg5{a} libqt5svg5-dev{a} libqt5test5t64{a} libqt5widgets5t64{a} libqt5xml5t64{a} librav1e0{a} libraw23t64{a} librbio4{a} libreadline8t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv0{a} libsm6{a} libsombok3{a} libspex3{a} libspqr4{a} libsqlite3-dev{a} libssh2-1t64{a} libssl-dev{a} libsuitesparse-dev{a} libsuitesparse-mongoose3{a} libsuitesparseconfig7{a} libsvm-dev{a} libsvm3{a} libsvtav1enc1d1{a} libsynctex2{a} libsz2{a} libteckit0{a} libtexlua53-5{a} libthai-data{a} libthai0{a} libtiff6{a} libtinyxml2-10{a} libtool{a} libuchardet0{a} libumfpack6{a} libunicode-linebreak-perl{a} libuv1t64{a} libvulkan-dev{a} libvulkan1{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwayland-server0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libwildmagic-common{a} libwildmagic-dev{a} libwildmagic5{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxerces-c-dev{a} libxerces-c3.2t64{a} libxext-dev{a} libxext6{a} libxfixes3{a} libxi6{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxshmfence1{a} libxt6t64{a} libxxf86vm1{a} libyaml-tiny-perl{a} libyuv0{a} libz3-4{a} libzzip-0-13t64{a} lmodern{a} m4{a} man-db{a} media-types{a} netbase{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} poppler-data{a} preview-latex-style{a} procps{a} python3{a} python3-minimal{a} python3-pkg-resources{a} python3-pygments{a} python3.11{a} python3.11-minimal{a} qt5-qmake{a} qt5-qmake-bin{a} qtbase5-dev{a} qtbase5-dev-tools{a} qtchooser{a} readline-common{a} sensible-utils{a} shared-mime-info{a} t1utils{a} tex-common{a} tex-gyre{a} texlive-base{a} texlive-binaries{a} texlive-extra-utils{a} texlive-font-utils{a} texlive-fonts-extra{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-luatex{a} texlive-pictures{a} texlive-plain-generic{a} tzdata{a} ucf{a} x11-common{a} x11proto-dev{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates cm-super curl dbus default-jre dvisvgm fonts-adf-accanthis fonts-adf-berenis fonts-adf-gillius fonts-adf-universalis fonts-cabin fonts-cantarell fonts-clear-sans fonts-comfortaa fonts-comic-neue fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu-extra fonts-droid-fallback fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-go fonts-inter fonts-lato fonts-liberation2 fonts-linuxlibertine fonts-lobstertwo fonts-noto-color-emoji fonts-noto-core fonts-noto-mono fonts-oflb-asana-math fonts-open-sans fonts-paratype fonts-roboto-slab fonts-roboto-unhinted fonts-sil-andika fonts-sil-charis fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix fonts-texgyre fonts-texgyre-math javascript-common krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libgraphblas-dev libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libldap-common liblog-log4perl-perl libltdl-dev libmagickcore-6.q16-7-extra libmail-sendmail-perl libnet-dbus-perl libqt5sql5-ibase libqt5sql5-mysql libqt5sql5-odbc libqt5sql5-psql libqt5sql5-sqlite libqt5sql5-tds libsasl2-modules libspreadsheet-parseexcel-perl libx11-protocol-perl lynx mesa-vulkan-drivers netpbm ps2eps psmisc publicsuffix qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 ruby texlive-fonts-extra-links tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 390 newly installed, 0 to remove and 0 not upgraded. Need to get 1129 MB of archives. After unpacking 3654 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libfftw3-double3 amd64 3.3.10-1+b2 [779 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1 [23.0 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23 [252 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+6 [93.0 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 13 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [113 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.4.2-1 [551 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-dav1d amd64 1.17.6-1+b2 [9856 B] Get: 18 http://deb.debian.org/debian unstable/main amd64 libde265-0 amd64 1.0.15-1+b1 [187 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-libde265 amd64 1.17.6-1+b2 [13.1 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libheif1 amd64 1.17.6-1+b2 [284 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.14-2+b1 [154 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.80.2-2 [1485 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 liblqr-1-0 amd64 0.4.2-2.1+b1 [29.2 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libltdl7 amd64 2.4.7-7+b1 [393 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.0-2+b3 [190 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libraw23t64 amd64 0.21.2-2.1 [388 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1 [311 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.4.0-0.1 [110 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.4.0-0.1 [123 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2 [144 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-2 [670 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 imagemagick-6-common all 8:6.9.12.98+dfsg1-5.2 [67.1 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libmagickcore-6.q16-7t64 amd64 8:6.9.12.98+dfsg1-5.2 [1698 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libmagickwand-6.q16-7t64 amd64 8:6.9.12.98+dfsg1-5.2 [309 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 poppler-data all 0.4.12-1 [1601 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024a-4 [255 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-4 [69.3 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libpython3.11-stdlib amd64 3.11.9-1 [1792 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3.11 amd64 3.11.9-1 [602 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.11.8-1 [9332 B] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.11.8-1 [27.4 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-4 [64.6 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-4 [880 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.1-2 [94.2 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.2-2 [346 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 83 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.0-5 [215 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.8.0-1 [441 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libjsoncpp25 amd64 1.9.5-6+b2 [81.9 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 librhash0 amd64 1.4.3-3+b1 [132 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.48.0-4 [148 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.29.3-1 [2167 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.29.3-1+b1 [10.7 MB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-3 [148 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.1.0-1 [836 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 coinor-libcoinutils3v5 amd64 2.11.4+repack1-4 [448 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 coinor-libosi1v5 amd64 0.108.10+ds-1 [280 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 coinor-libclp1 amd64 1.17.9+ds-2 [866 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 coinor-libcgl1 amd64 0.60.8+ds-2 [417 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 coinor-libcbc3.1 amd64 2.10.11+ds1-3 [704 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-5.1 [31.3 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.0-3 [159 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.0-3 [4880 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 coinor-libcoinutils-dev amd64 2.11.4+repack1-4 [777 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 coinor-libosi-dev amd64 0.108.10+ds-1 [350 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 coinor-libclp-dev amd64 1.17.9+ds-2 [1036 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 coinor-libcgl-dev amd64 0.60.8+ds-2 [519 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 coinor-libcbc-dev amd64 2.10.11+ds1-3 [857 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libtinyxml2-10 amd64 10.0.0+dfsg-2+b1 [30.3 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.17.2+dfsg-1 [818 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 cppcheck amd64 2.14.0-1 [2191 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 124 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 dh-exec amd64 0.30 [25.6 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20240517-1 [93.3 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libllvm16t64 amd64 1:16.0.6-27 [23.1 MB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libclang-cpp16t64 amd64 1:16.0.6-27 [11.5 MB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libclang1-16t64 amd64 1:16.0.6-27 [6581 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libfmt9 amd64 9.1.0+ds1-2 [113 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 doxygen amd64 1.9.8+ds-2+b1 [4913 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-1.1 [463 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 fonts-lmodern all 2.005-1 [4540 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libgs-common all 10.03.1~dfsg-1 [148 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libgs10-common all 10.03.1~dfsg-1 [474 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libavahi-common-data amd64 0.8-13+b2 [112 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libavahi-common3 amd64 0.8-13+b2 [43.3 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 libdbus-1-3 amd64 1.14.10-4+b1 [203 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libavahi-client3 amd64 0.8-13+b2 [47.0 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libcups2t64 amd64 2.4.7-1.2+b1 [247 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 libidn12 amd64 1.42-2 [80.4 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libijs-0.35 amd64 0.35-15.1+b1 [15.1 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libjbig2dec0 amd64 0.20-1+b2 [64.3 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 libpaper1 amd64 1.1.29+b1 [12.9 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.0.10-1+b1 [56.7 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1+b1 [33.6 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2 [187 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libgs10 amd64 10.03.1~dfsg-1 [2510 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 ghostscript amd64 10.03.1~dfsg-1 [50.2 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libcdt5 amd64 2.42.2-9+b1 [39.8 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 libcgraph6 amd64 2.42.2-9+b1 [63.6 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libaom3 amd64 3.8.2-2 [1869 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libabsl20230802 amd64 20230802.1-4 [464 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 libgav1-1 amd64 0.19.0-2+b1 [351 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 librav1e0 amd64 0.7.1-2 [900 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libsvtav1enc1d1 amd64 1.7.0+dfsg-2+b1 [2169 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 libyuv0 amd64 0.0.1888.20240509-4 [170 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 libavif16 amd64 1.0.4-3 [106 kB] Get: 166 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b1 [56.1 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libgd3 amd64 2.3.3-9+b3 [125 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2 [157 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2 [115 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2 [105 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b1 [27.9 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2 [49.1 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.52.2+ds-1 [218 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.52.2+ds-1 [48.1 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.52.2+ds-1 [35.0 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 libpathplan4 amd64 2.42.2-9+b1 [42.2 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 libgvc6 amd64 2.42.2-9+b1 [682 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 libgvpr2 amd64 2.42.2-9+b1 [189 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 liblab-gamut1 amd64 2.42.2-9+b1 [198 kB] Get: 187 http://deb.debian.org/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-3+b2 [58.7 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 libxaw7 amd64 2:1.0.14-1+b2 [199 kB] Get: 189 http://deb.debian.org/debian unstable/main amd64 graphviz amd64 2.42.2-9+b1 [614 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 hdf5-helpers amd64 1.10.10+repack-3.3 [23.4 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 hicolor-icon-theme all 0.18-1 [12.0 kB] Get: 192 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 72.1-4+b1 [208 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 imagemagick-6.q16 amd64 8:6.9.12.98+dfsg1-5.2 [290 kB] Get: 194 http://deb.debian.org/debian unstable/main amd64 imagemagick amd64 8:6.9.12.98+dfsg1-5.2 [19.4 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.3-1 [23.4 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.3-1 [7740 B] Get: 197 http://deb.debian.org/debian unstable/main amd64 libaec-dev amd64 1.1.3-1 [21.0 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 libsuitesparseconfig7 amd64 1:7.7.0+dfsg-2 [22.4 kB] Get: 199 http://deb.debian.org/debian unstable/main amd64 libamd3 amd64 1:7.7.0+dfsg-2 [39.0 kB] Get: 200 http://deb.debian.org/debian unstable/main amd64 libapache-pom-java all 29-2 [5276 B] Get: 201 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-3 [10.6 MB] Get: 202 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83.0 amd64 1.83.0-3 [230 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83.0 amd64 1.83.0-3 [332 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83-dev amd64 1.83.0-3 [372 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83-dev amd64 1.83.0-3 [239 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 libboost-date-time-dev amd64 1.83.0.2+b2 [3596 B] Get: 207 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 208 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83.0 amd64 1.83.0-3 [324 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 72.1-4+b1 [10.4 MB] Get: 210 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83-dev amd64 1.83.0-3 [342 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-3 [260 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 213 http://deb.debian.org/debian unstable/main amd64 libboost-math1.83.0 amd64 1.83.0-3 [506 kB] Get: 214 http://deb.debian.org/debian unstable/main amd64 libboost-math1.83-dev amd64 1.83.0-3 [549 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 libboost-math-dev amd64 1.83.0.2+b2 [3796 B] Get: 216 http://deb.debian.org/debian unstable/main amd64 libbtf2 amd64 1:7.7.0+dfsg-2 [23.3 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 libcamd3 amd64 1:7.7.0+dfsg-2 [36.0 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 libccolamd3 amd64 1:7.7.0+dfsg-2 [37.9 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 libcolamd3 amd64 1:7.7.0+dfsg-2 [31.3 kB] Get: 220 http://deb.debian.org/debian unstable/main amd64 libcholmod5 amd64 1:7.7.0+dfsg-2 [623 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 libcommons-logging-java all 1.3.0-1 [68.6 kB] Get: 223 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.8.0-1 [434 kB] Get: 224 http://deb.debian.org/debian unstable/main amd64 libcurl4-openssl-dev amd64 8.8.0-1 [548 kB] Get: 225 http://deb.debian.org/debian unstable/main amd64 libcxsparse4 amd64 1:7.7.0+dfsg-2 [82.3 kB] Get: 226 http://deb.debian.org/debian unstable/main amd64 libdouble-conversion3 amd64 3.3.0-1+b1 [41.0 kB] Get: 227 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.120-2 [7688 B] Get: 228 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.120-2 [38.1 kB] Get: 229 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.120-2 [21.4 kB] Get: 230 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b1 [51.9 kB] Get: 231 http://deb.debian.org/debian unstable/main amd64 libdrm-intel1 amd64 2.4.120-2 [62.7 kB] Get: 232 http://deb.debian.org/debian unstable/main amd64 libdrm-nouveau2 amd64 2.4.120-2 [19.3 kB] Get: 233 http://deb.debian.org/debian unstable/main amd64 libdrm-radeon1 amd64 2.4.120-2 [22.2 kB] Get: 234 http://deb.debian.org/debian unstable/main amd64 libglvnd0 amd64 1.7.0-1+b1 [56.3 kB] Get: 235 http://deb.debian.org/debian unstable/main amd64 libwayland-server0 amd64 1.22.0-2.1+b1 [33.0 kB] Get: 236 http://deb.debian.org/debian unstable/main amd64 libxcb-randr0 amd64 1.17.0-2 [116 kB] Get: 237 http://deb.debian.org/debian unstable/main amd64 libgbm1 amd64 24.0.8-1 [40.9 kB] Get: 238 http://deb.debian.org/debian unstable/main amd64 libglapi-mesa amd64 24.0.8-1 [36.5 kB] Get: 239 http://deb.debian.org/debian unstable/main amd64 libwayland-client0 amd64 1.22.0-2.1+b1 [25.7 kB] Get: 240 http://deb.debian.org/debian unstable/main amd64 libx11-xcb1 amd64 2:1.8.7-1+b1 [232 kB] Get: 241 http://deb.debian.org/debian unstable/main amd64 libxcb-dri2-0 amd64 1.17.0-2 [106 kB] Get: 242 http://deb.debian.org/debian unstable/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [107 kB] Get: 243 http://deb.debian.org/debian unstable/main amd64 libxcb-present0 amd64 1.17.0-2 [105 kB] Get: 244 http://deb.debian.org/debian unstable/main amd64 libxcb-sync1 amd64 1.17.0-2 [108 kB] Get: 245 http://deb.debian.org/debian unstable/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [109 kB] Get: 246 http://deb.debian.org/debian unstable/main amd64 libxshmfence1 amd64 1.3-1+b1 [8852 B] Get: 247 http://deb.debian.org/debian unstable/main amd64 libegl-mesa0 amd64 24.0.8-1 [119 kB] Get: 248 http://deb.debian.org/debian unstable/main amd64 libegl1 amd64 1.7.0-1+b1 [34.3 kB] Get: 249 http://deb.debian.org/debian unstable/main amd64 libxcb-glx0 amd64 1.17.0-2 [122 kB] Get: 250 http://deb.debian.org/debian unstable/main amd64 libxfixes3 amd64 1:6.0.0-2+b1 [20.3 kB] Get: 251 http://deb.debian.org/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get: 252 http://deb.debian.org/debian unstable/main amd64 libvulkan1 amd64 1.3.280.0-1 [123 kB] Get: 253 http://deb.debian.org/debian unstable/main amd64 libllvm17t64 amd64 1:17.0.6-12 [23.7 MB] Get: 254 http://deb.debian.org/debian unstable/main amd64 libsensors-config all 1:3.6.0-9 [14.6 kB] Get: 255 http://deb.debian.org/debian unstable/main amd64 libsensors5 amd64 1:3.6.0-9 [34.6 kB] Get: 256 http://deb.debian.org/debian unstable/main amd64 libgl1-mesa-dri amd64 24.0.8-1 [8284 kB] Get: 257 http://deb.debian.org/debian unstable/main amd64 libglx-mesa0 amd64 24.0.8-1 [151 kB] Get: 258 http://deb.debian.org/debian unstable/main amd64 libglx0 amd64 1.7.0-1+b1 [35.0 kB] Get: 259 http://deb.debian.org/debian unstable/main amd64 libgl1 amd64 1.7.0-1+b1 [89.8 kB] Get: 260 http://deb.debian.org/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 261 http://deb.debian.org/debian unstable/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get: 262 http://deb.debian.org/debian unstable/main amd64 libxau-dev amd64 1:1.0.9-1+b1 [21.3 kB] Get: 263 http://deb.debian.org/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.2-3+b1 [40.8 kB] Get: 264 http://deb.debian.org/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 265 http://deb.debian.org/debian unstable/main amd64 libxcb1-dev amd64 1.17.0-2 [181 kB] Get: 266 http://deb.debian.org/debian unstable/main amd64 libx11-dev amd64 2:1.8.7-1+b1 [875 kB] Get: 267 http://deb.debian.org/debian unstable/main amd64 libglx-dev amd64 1.7.0-1+b1 [15.8 kB] Get: 268 http://deb.debian.org/debian unstable/main amd64 libgl-dev amd64 1.7.0-1+b1 [101 kB] Get: 269 http://deb.debian.org/debian unstable/main amd64 libegl-dev amd64 1.7.0-1+b1 [19.5 kB] Get: 270 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-1+b2 [36.4 kB] Get: 271 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-1+b2 [29.7 kB] Get: 272 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-1+b2 [26.2 kB] Get: 273 http://deb.debian.org/debian unstable/main amd64 pkg-config amd64 1.8.1-1+b2 [14.0 kB] Get: 274 http://deb.debian.org/debian unstable/main amd64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 275 http://deb.debian.org/debian unstable/main amd64 libevdev2 amd64 1.13.1+dfsg-1+b1 [32.6 kB] Get: 276 http://deb.debian.org/debian unstable/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 277 http://deb.debian.org/debian unstable/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get: 278 http://deb.debian.org/debian unstable/main amd64 libfontbox-java all 1:1.8.16-5 [211 kB] Get: 279 http://deb.debian.org/debian unstable/main amd64 libglpk40 amd64 5.0-1+b1 [397 kB] Get: 280 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-2+b1 [329 kB] Get: 281 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-2+b1 [640 kB] Get: 282 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1 [919 kB] Get: 283 http://deb.debian.org/debian unstable/main amd64 libklu2 amd64 1:7.7.0+dfsg-2 [87.1 kB] Get: 284 http://deb.debian.org/debian unstable/main amd64 libldl3 amd64 1:7.7.0+dfsg-2 [23.0 kB] Get: 285 http://deb.debian.org/debian unstable/main amd64 libsuitesparse-mongoose3 amd64 1:7.7.0+dfsg-2 [45.1 kB] Get: 286 http://deb.debian.org/debian unstable/main amd64 libumfpack6 amd64 1:7.7.0+dfsg-2 [267 kB] Get: 287 http://deb.debian.org/debian unstable/main amd64 librbio4 amd64 1:7.7.0+dfsg-2 [38.5 kB] Get: 288 http://deb.debian.org/debian unstable/main amd64 libspqr4 amd64 1:7.7.0+dfsg-2 [140 kB] Get: 289 http://deb.debian.org/debian unstable/main amd64 libspex3 amd64 1:7.7.0+dfsg-2 [55.9 kB] Get: 290 http://deb.debian.org/debian unstable/main amd64 libparu0 amd64 1:7.7.0+dfsg-2 [61.3 kB] Get: 291 http://deb.debian.org/debian unstable/main amd64 libsuitesparse-dev amd64 1:7.7.0+dfsg-2 [1437 kB] Get: 292 http://deb.debian.org/debian unstable/main amd64 libglpk-dev amd64 5.0-1+b1 [467 kB] Get: 293 http://deb.debian.org/debian unstable/main amd64 libopengl0 amd64 1.7.0-1+b1 [31.1 kB] Get: 294 http://deb.debian.org/debian unstable/main amd64 libglu1-mesa amd64 9.0.2-1.1+b1 [180 kB] Get: 295 http://deb.debian.org/debian unstable/main amd64 libopengl-dev amd64 1.7.0-1+b1 [5380 B] Get: 296 http://deb.debian.org/debian unstable/main amd64 libglu1-mesa-dev amd64 9.0.2-1.1+b1 [219 kB] Get: 297 http://deb.debian.org/debian unstable/main amd64 libgudev-1.0-0 amd64 238-5 [14.4 kB] Get: 298 http://deb.debian.org/debian unstable/main amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.3 [1241 kB] Get: 299 http://deb.debian.org/debian unstable/main amd64 libhdf5-cpp-103-1t64 amd64 1.10.10+repack-3.3 [131 kB] Get: 300 http://deb.debian.org/debian unstable/main amd64 libhdf5-fortran-102t64 amd64 1.10.10+repack-3.3 [89.3 kB] Get: 301 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.3 [63.3 kB] Get: 302 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-fortran-100t64 amd64 1.10.10+repack-3.3 [40.4 kB] Get: 303 http://deb.debian.org/debian unstable/main amd64 libhdf5-hl-cpp-100t64 amd64 1.10.10+repack-3.3 [21.3 kB] Get: 304 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3 [290 kB] Get: 305 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-3 [71.9 kB] Get: 306 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.2.1-3 [2699 kB] Get: 307 http://deb.debian.org/debian unstable/main amd64 libhdf5-dev amd64 1.10.10+repack-3.3 [2639 kB] Get: 308 http://deb.debian.org/debian unstable/main amd64 libwacom-common all 2.10.0-2 [62.5 kB] Get: 309 http://deb.debian.org/debian unstable/main amd64 libwacom9 amd64 2.10.0-2 [22.4 kB] Get: 310 http://deb.debian.org/debian unstable/main amd64 libinput-bin amd64 1.25.0-1+b2 [24.8 kB] Get: 311 http://deb.debian.org/debian unstable/main amd64 libmtdev1t64 amd64 1.1.6-1.2 [22.2 kB] Get: 312 http://deb.debian.org/debian unstable/main amd64 libinput10 amd64 1.25.0-1+b2 [128 kB] Get: 313 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 314 http://deb.debian.org/debian unstable/main amd64 libkpathsea6 amd64 2024.20240313.70630+ds-2 [156 kB] Get: 315 http://deb.debian.org/debian unstable/main amd64 libmd4c0 amd64 0.4.8-1+b1 [45.1 kB] Get: 316 http://deb.debian.org/debian unstable/main amd64 libmime-charset-perl all 1.013.1-2 [34.0 kB] Get: 317 http://deb.debian.org/debian unstable/main amd64 libmpfi0 amd64 1.5.4+ds-3 [35.1 kB] Get: 318 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 1.1.29+b1 [9176 B] Get: 319 http://deb.debian.org/debian unstable/main amd64 libpcre2-16-0 amd64 10.42-4+b1 [246 kB] Get: 320 http://deb.debian.org/debian unstable/main amd64 libpdfbox-java all 1:1.8.16-5 [5527 kB] Get: 321 http://deb.debian.org/debian unstable/main amd64 libpotrace0 amd64 1.16-2+b1 [25.2 kB] Get: 322 http://deb.debian.org/debian unstable/main amd64 libptexenc1 amd64 2024.20240313.70630+ds-2 [48.5 kB] Get: 323 http://deb.debian.org/debian unstable/main amd64 shared-mime-info amd64 2.4-4 [759 kB] Get: 324 http://deb.debian.org/debian unstable/main amd64 libqt5core5t64 amd64 5.15.13+dfsg-2 [1837 kB] Get: 325 http://deb.debian.org/debian unstable/main amd64 libqt5concurrent5t64 amd64 5.15.13+dfsg-2 [43.8 kB] Get: 326 http://deb.debian.org/debian unstable/main amd64 libqt5dbus5t64 amd64 5.15.13+dfsg-2 [214 kB] Get: 327 http://deb.debian.org/debian unstable/main amd64 libqt5network5t64 amd64 5.15.13+dfsg-2 [678 kB] Get: 328 http://deb.debian.org/debian unstable/main amd64 libxcb-icccm4 amd64 0.4.1-1.1+b1 [26.8 kB] Get: 329 http://deb.debian.org/debian unstable/main amd64 libxcb-util1 amd64 0.4.0-1+b1 [23.2 kB] Get: 330 http://deb.debian.org/debian unstable/main amd64 libxcb-image0 amd64 0.4.0-2+b1 [22.2 kB] Get: 331 http://deb.debian.org/debian unstable/main amd64 libxcb-keysyms1 amd64 0.4.0-1+b2 [16.4 kB] Get: 332 http://deb.debian.org/debian unstable/main amd64 libxcb-render-util0 amd64 0.3.9-1+b1 [18.3 kB] Get: 333 http://deb.debian.org/debian unstable/main amd64 libxcb-shape0 amd64 1.17.0-2 [105 kB] Get: 334 http://deb.debian.org/debian unstable/main amd64 libxcb-xinerama0 amd64 1.17.0-2 [105 kB] Get: 335 http://deb.debian.org/debian unstable/main amd64 libxcb-xinput0 amd64 1.17.0-2 [130 kB] Get: 336 http://deb.debian.org/debian unstable/main amd64 libxcb-xkb1 amd64 1.17.0-2 [129 kB] Get: 337 http://deb.debian.org/debian unstable/main amd64 xkb-data all 2.41-2 [795 kB] Get: 338 http://deb.debian.org/debian unstable/main amd64 libxkbcommon0 amd64 1.6.0-1+b1 [109 kB] Get: 339 http://deb.debian.org/debian unstable/main amd64 libxkbcommon-x11-0 amd64 1.6.0-1+b1 [16.2 kB] Get: 340 http://deb.debian.org/debian unstable/main amd64 libqt5gui5t64 amd64 5.15.13+dfsg-2 [3450 kB] Get: 341 http://deb.debian.org/debian unstable/main amd64 libqt5widgets5t64 amd64 5.15.13+dfsg-2 [2380 kB] Get: 342 http://deb.debian.org/debian unstable/main amd64 libqt5opengl5t64 amd64 5.15.13+dfsg-2 [149 kB] Get: 343 http://deb.debian.org/debian unstable/main amd64 libqt5printsupport5t64 amd64 5.15.13+dfsg-2 [204 kB] Get: 344 http://deb.debian.org/debian unstable/main amd64 libqt5sql5t64 amd64 5.15.13+dfsg-2 [123 kB] Get: 345 http://deb.debian.org/debian unstable/main amd64 libqt5test5t64 amd64 5.15.13+dfsg-2 [149 kB] Get: 346 http://deb.debian.org/debian unstable/main amd64 libqt5xml5t64 amd64 5.15.13+dfsg-2 [124 kB] Get: 347 http://deb.debian.org/debian unstable/main amd64 libvulkan-dev amd64 1.3.280.0-1 [1348 kB] Get: 348 http://deb.debian.org/debian unstable/main amd64 libxext-dev amd64 2:1.3.4-1+b1 [107 kB] Get: 349 http://deb.debian.org/debian unstable/main amd64 qt5-qmake-bin amd64 5.15.13+dfsg-2 [1045 kB] Get: 350 http://deb.debian.org/debian unstable/main amd64 qtchooser amd64 66-2 [26.3 kB] Get: 351 http://deb.debian.org/debian unstable/main amd64 qt5-qmake amd64 5.15.13+dfsg-2 [223 kB] Get: 352 http://deb.debian.org/debian unstable/main amd64 qtbase5-dev-tools amd64 5.15.13+dfsg-2 [765 kB] Get: 353 http://deb.debian.org/debian unstable/main amd64 qtbase5-dev amd64 5.15.13+dfsg-2 [1122 kB] Get: 354 http://deb.debian.org/debian unstable/main amd64 libqt5opengl5-dev amd64 5.15.13+dfsg-2 [50.7 kB] Get: 355 http://deb.debian.org/debian unstable/main amd64 libqt5svg5 amd64 5.15.13-2 [135 kB] Get: 356 http://deb.debian.org/debian unstable/main amd64 libqt5svg5-dev amd64 5.15.13-2 [13.0 kB] Get: 357 http://deb.debian.org/debian unstable/main amd64 libsombok3 amd64 2.4.0-2+b1 [31.4 kB] Get: 358 http://deb.debian.org/debian unstable/main amd64 libsqlite3-dev amd64 3.45.3-1 [1088 kB] Get: 359 http://deb.debian.org/debian unstable/main amd64 libsvm3 amd64 3.24+ds-6+b1 [41.5 kB] Get: 360 http://deb.debian.org/debian unstable/main amd64 libsvm-dev amd64 3.24+ds-6+b1 [62.1 kB] Get: 361 http://deb.debian.org/debian unstable/main amd64 libsynctex2 amd64 2024.20240313.70630+ds-2 [62.2 kB] Get: 362 http://deb.debian.org/debian unstable/main amd64 libteckit0 amd64 2.5.12+ds1-1 [339 kB] Get: 363 http://deb.debian.org/debian unstable/main amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-2 [113 kB] Get: 364 http://deb.debian.org/debian unstable/main amd64 libunicode-linebreak-perl amd64 0.0.20190101-1+b7 [96.2 kB] Get: 365 http://deb.debian.org/debian unstable/main amd64 libwildmagic-common all 5.17+cleaned1-7 [7020 kB] Get: 366 http://deb.debian.org/debian unstable/main amd64 libwildmagic5 amd64 5.17+cleaned1-7+b1 [1589 kB] Get: 367 http://deb.debian.org/debian unstable/main amd64 libwildmagic-dev amd64 5.17+cleaned1-7+b1 [317 kB] Get: 368 http://deb.debian.org/debian unstable/main amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3 [886 kB] Get: 369 http://deb.debian.org/debian unstable/main amd64 libxerces-c-dev amd64 3.2.4+debian-1.3 [1696 kB] Get: 370 http://deb.debian.org/debian unstable/main amd64 libxi6 amd64 2:1.8.1-1 [79.0 kB] Get: 371 http://deb.debian.org/debian unstable/main amd64 libyaml-tiny-perl all 1.74-1 [30.7 kB] Get: 372 http://deb.debian.org/debian unstable/main amd64 libzzip-0-13t64 amd64 0.13.72+dfsg.1-1.2+b1 [56.2 kB] Get: 373 http://deb.debian.org/debian unstable/main amd64 tex-common all 6.18 [32.5 kB] Get: 374 http://deb.debian.org/debian unstable/main amd64 lmodern all 2.005-1 [9480 kB] Get: 375 http://deb.debian.org/debian unstable/main amd64 preview-latex-style all 13.2-1 [350 kB] Get: 376 http://deb.debian.org/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get: 377 http://deb.debian.org/debian unstable/main amd64 tex-gyre all 20180621-6 [6209 kB] Get: 378 http://deb.debian.org/debian unstable/main amd64 texlive-binaries amd64 2024.20240313.70630+ds-2 [8438 kB] Get: 379 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 380 http://deb.debian.org/debian unstable/main amd64 texlive-base all 2024.20240401-2 [22.7 MB] Get: 381 http://deb.debian.org/debian unstable/main amd64 texlive-latex-base all 2024.20240401-2 [1258 kB] Get: 382 http://deb.debian.org/debian unstable/main amd64 texlive-luatex all 2024.20240401-2 [26.6 MB] Get: 383 http://deb.debian.org/debian unstable/main amd64 texlive-plain-generic all 2024.20240401-2 [28.6 MB] Get: 384 http://deb.debian.org/debian unstable/main amd64 texlive-extra-utils all 2024.20240401-2 [63.8 MB] Get: 385 http://deb.debian.org/debian unstable/main amd64 texlive-font-utils all 2024.20240401-2 [6979 kB] Get: 386 http://deb.debian.org/debian unstable/main amd64 texlive-fonts-extra all 2024.20240401-2 [630 MB] Get: 387 http://deb.debian.org/debian unstable/main amd64 texlive-fonts-recommended all 2024.20240401-2 [4990 kB] Get: 388 http://deb.debian.org/debian unstable/main amd64 texlive-latex-recommended all 2024.20240401-2 [8847 kB] Get: 389 http://deb.debian.org/debian unstable/main amd64 texlive-pictures all 2024.20240401-2 [17.0 MB] Get: 390 http://deb.debian.org/debian unstable/main amd64 texlive-latex-extra all 2024.20240401-2 [19.8 MB] Fetched 1129 MB in 19s (58.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libfftw3-double3:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19717 files and directories currently installed.) Preparing to unpack .../00-libfftw3-double3_3.3.10-1+b2_amd64.deb ... Unpacking libfftw3-double3:amd64 (3.3.10-1+b2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../01-libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package libbrotli1:amd64. 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Selecting previously unselected package x11-common. Preparing to unpack .../08-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../09-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../10-xfonts-utils_1%3a7.7+6_amd64.deb ... Unpacking xfonts-utils (1:7.7+6) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../11-fonts-urw-base35_20200910-8_all.deb ... Unpacking fonts-urw-base35 (20200910-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../12-fontconfig-config_2.15.0-1.1_amd64.deb ... Unpacking fontconfig-config (2.15.0-1.1) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../13-libfontconfig1_2.15.0-1.1_amd64.deb ... Unpacking libfontconfig1:amd64 (2.15.0-1.1) ... Selecting previously unselected package libsharpyuv0:amd64. Preparing to unpack .../14-libsharpyuv0_1.4.0-0.1_amd64.deb ... Unpacking libsharpyuv0:amd64 (1.4.0-0.1) ... Selecting previously unselected package libdav1d7:amd64. Preparing to unpack .../15-libdav1d7_1.4.2-1_amd64.deb ... Unpacking libdav1d7:amd64 (1.4.2-1) ... Selecting previously unselected package libheif-plugin-dav1d:amd64. Preparing to unpack .../16-libheif-plugin-dav1d_1.17.6-1+b2_amd64.deb ... Unpacking libheif-plugin-dav1d:amd64 (1.17.6-1+b2) ... Selecting previously unselected package libde265-0:amd64. Preparing to unpack .../17-libde265-0_1.0.15-1+b1_amd64.deb ... Unpacking libde265-0:amd64 (1.0.15-1+b1) ... Selecting previously unselected package libheif-plugin-libde265:amd64. Preparing to unpack .../18-libheif-plugin-libde265_1.17.6-1+b2_amd64.deb ... Unpacking libheif-plugin-libde265:amd64 (1.17.6-1+b2) ... Selecting previously unselected package libheif1:amd64. 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Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../48-python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../008-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-4_amd64.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.1-2_amd64.deb ... Unpacking bsdextrautils (2.40.1-2) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../011-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.12.1-1_amd64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package ucf. Preparing to unpack .../013-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... 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Unpacking texlive-latex-extra (2024.20240401-2) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libgraphite2-3:amd64 (1.3.14-2) ... Setting up liblcms2-2:amd64 (2.14-2+b1) ... Setting up libpixman-1-0:amd64 (0.42.2-1+b1) ... Setting up libsharpyuv0:amd64 (1.4.0-0.1) ... Setting up libwayland-server0:amd64 (1.22.0-2.1+b1) ... Setting up libaom3:amd64 (3.8.2-2) ... Setting up libpciaccess0:amd64 (0.17-3+b1) ... Setting up libfile-which-perl (1.27-2) ... Setting up libxau6:amd64 (1:1.0.9-1+b1) ... Setting up imagemagick-6-common (8:6.9.12.98+dfsg1-5.2) ... Setting up libdouble-conversion3:amd64 (3.3.0-1+b1) ... Setting up libkeyutils1:amd64 (1.6.3-3) ... Setting up libboost1.83-dev:amd64 (1.83.0-3) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-4+b1) ... Setting up bsdextrautils (2.40.1-2) ... Setting up hdf5-helpers (1.10.10+repack-3.3) ... Setting up hicolor-icon-theme (0.18-1) ... 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Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-serialization1.83.0:amd64 (1.83.0-3) ... Setting up libbtf2:amd64 (1:7.7.0+dfsg-2) ... Setting up xtrans-dev (1.4.0-1) ... Setting up libfontenc1:amd64 (1:1.1.8-1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:amd64 (4.8.12-3.1+b2) ... Setting up libglib2.0-0t64:amd64 (2.80.2-2) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libpkgconf3:amd64 (1.8.1-1+b2) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-2+b1) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-3) ... Setting up qt5-qmake-bin (5.15.13+dfsg-2) ... Setting up libzzip-0-13t64:amd64 (0.13.72+dfsg.1-1.2+b1) ... Setting up libsqlite3-dev:amd64 (3.45.3-1) ... Setting up libx11-data (2:1.8.7-1) ... 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Setting up libxkbcommon-x11-0:amd64 (1.6.0-1+b1) ... Setting up libsvm-dev:amd64 (3.24+ds-6+b1) ... Setting up liblapack-dev:amd64 (3.12.0-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libeigen3-dev (3.4.0-4) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Setting up libboost-regex1.83-dev:amd64 (1.83.0-3) ... Setting up pkg-config:amd64 (1.8.1-1+b2) ... Setting up libgav1-1:amd64 (0.19.0-2+b1) ... Setting up ucf (3.0043+nmu1) ... Setting up libboost-date-time-dev:amd64 (1.83.0.2+b2) ... Setting up coinor-libcoinutils-dev:amd64 (2.11.4+repack1-4) ... Setting up coinor-libosi1v5:amd64 (0.108.10+ds-1) ... Setting up libccolamd3:amd64 (1:7.7.0+dfsg-2) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up libxcb-dri2-0:amd64 (1.17.0-2) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libgvpr2:amd64 (2.42.2-9+b1) ... 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Setting up libxrender1:amd64 (1:0.9.10-1.1+b1) ... Setting up libcurl4t64:amd64 (8.8.0-1) ... Setting up libgbm1:amd64 (24.0.8-1) ... Setting up libspqr4:amd64 (1:7.7.0+dfsg-2) ... Setting up libsombok3:amd64 (2.4.0-2+b1) ... Setting up libdrm-radeon1:amd64 (2.4.120-2) ... Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up coinor-libosi-dev:amd64 (0.108.10+ds-1) ... Setting up libpango-1.0-0:amd64 (1.52.2+ds-1) ... Setting up libdrm-intel1:amd64 (2.4.120-2) ... Setting up libgl1-mesa-dri:amd64 (24.0.8-1) ... Setting up libx11-dev:amd64 (2:1.8.7-1+b1) ... Setting up libcurl3t64-gnutls:amd64 (8.8.0-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libpaper-utils (1.1.29+b1) ... Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Setting up libclang1-16t64 (1:16.0.6-27) ... Setting up libxerces-c3.2t64:amd64 (3.2.4+debian-1.3) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libclang-cpp16t64 (1:16.0.6-27) ... Setting up libcairo2:amd64 (1.18.0-3+b1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libqt5core5t64:amd64 (5.15.13+dfsg-2) ... Setting up libegl-mesa0:amd64 (24.0.8-1) ... Setting up doxygen (1.9.8+ds-2+b1) ... Setting up libxfixes3:amd64 (1:6.0.0-2+b1) ... Setting up libcurl4-openssl-dev:amd64 (8.8.0-1) ... Setting up libklu2:amd64 (1:7.7.0+dfsg-2) ... Setting up libxerces-c-dev:amd64 (3.2.4+debian-1.3) ... Setting up coinor-libclp1:amd64 (1.17.9+ds-2) ... Setting up libunicode-linebreak-perl (0.0.20190101-1+b7) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2) ... Setting up coinor-libclp-dev:amd64 (1.17.9+ds-2) ... Setting up libxext-dev:amd64 (2:1.3.4-1+b1) ... Setting up libumfpack6:amd64 (1:7.7.0+dfsg-2) ... Setting up lmodern (2.005-1) ... Setting up libegl1:amd64 (1.7.0-1+b1) ... Setting up libqt5sql5t64:amd64 (5.15.13+dfsg-2) ... Setting up cmake (3.29.3-1+b1) ... Setting up coinor-libcgl1:amd64 (0.60.8+ds-2) ... Setting up libpangoft2-1.0-0:amd64 (1.52.2+ds-1) ... Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-3.3) ... Setting up libcups2t64:amd64 (2.4.7-1.2+b1) ... Setting up tex-gyre (20180621-6) ... Setting up libpangocairo-1.0-0:amd64 (1.52.2+ds-1) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up coinor-libcgl-dev:amd64 (0.60.8+ds-2) ... Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-3.3) ... Setting up python3.11 (3.11.9-1) ... Setting up libxmu6:amd64 (2:1.1.3-3+b2) ... Setting up libqt5dbus5t64:amd64 (5.15.13+dfsg-2) ... Setting up libglx-mesa0:amd64 (24.0.8-1) ... Setting up libxi6:amd64 (2:1.8.1-1) ... Setting up libglx0:amd64 (1.7.0-1+b1) ... Setting up libqt5concurrent5t64:amd64 (5.15.13+dfsg-2) ... Setting up preview-latex-style (13.2-1) ... Setting up libhdf5-cpp-103-1t64:amd64 (1.10.10+repack-3.3) ... Setting up libqt5network5t64:amd64 (5.15.13+dfsg-2) ... Setting up libhdf5-fortran-102t64:amd64 (1.10.10+repack-3.3) ... Setting up libqt5xml5t64:amd64 (5.15.13+dfsg-2) ... Setting up debhelper (13.15.3) ... Setting up libparu0:amd64 (1:7.7.0+dfsg-2) ... Setting up python3 (3.11.8-1) ... Setting up dh-exec (0.30) ... Setting up libxaw7:amd64 (2:1.0.14-1+b2) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up libqt5test5t64:amd64 (5.15.13+dfsg-2) ... Setting up qtbase5-dev-tools (5.15.13+dfsg-2) ... Setting up libgl1:amd64 (1.7.0-1+b1) ... Setting up coinor-libcbc3.1:amd64 (2.10.11+ds1-3) ... Setting up texlive-binaries (2024.20240313.70630+ds-2) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up libglx-dev:amd64 (1.7.0-1+b1) ... Setting up libhdf5-hl-cpp-100t64:amd64 (1.10.10+repack-3.3) ... Setting up coinor-libcbc-dev:amd64 (2.10.11+ds1-3) ... Setting up texlive-base (2024.20240401-2) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up libgl-dev:amd64 (1.7.0-1+b1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up libgs10-common (10.03.1~dfsg-1) ... Setting up libvulkan-dev:amd64 (1.3.280.0-1) ... Setting up libsuitesparse-dev:amd64 (1:7.7.0+dfsg-2) ... Setting up libegl-dev:amd64 (1.7.0-1+b1) ... Setting up texlive-luatex (2024.20240401-2) ... Setting up texlive-plain-generic (2024.20240401-2) ... Setting up libwildmagic5:amd64 (5.17+cleaned1-7+b1) ... Setting up libhdf5-hl-fortran-100t64:amd64 (1.10.10+repack-3.3) ... Setting up texlive-font-utils (2024.20240401-2) ... Setting up python3-pygments (2.17.2+dfsg-1) ... Setting up libqt5gui5t64:amd64 (5.15.13+dfsg-2) ... Setting up texlive-latex-base (2024.20240401-2) ... Setting up texlive-extra-utils (2024.20240401-2) ... Setting up libglpk-dev:amd64 (5.0-1+b1) ... Setting up texlive-fonts-extra (2024.20240401-2) ... Setting up texlive-latex-recommended (2024.20240401-2) ... Setting up libhdf5-dev (1.10.10+repack-3.3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libglu1-mesa-dev:amd64 (9.0.2-1.1+b1) ... Setting up texlive-pictures (2024.20240401-2) ... Setting up cppcheck (2.14.0-1) ... Setting up texlive-fonts-recommended (2024.20240401-2) ... Setting up libgs10:amd64 (10.03.1~dfsg-1) ... Setting up libwildmagic-dev:amd64 (5.17+cleaned1-7+b1) ... Setting up libqt5widgets5t64:amd64 (5.15.13+dfsg-2) ... Setting up libqt5svg5:amd64 (5.15.13-2) ... Setting up texlive-latex-extra (2024.20240401-2) ... Setting up ghostscript (10.03.1~dfsg-1) ... Setting up libqt5svg5-dev:amd64 (5.15.13-2) ... Setting up libqt5opengl5t64:amd64 (5.15.13+dfsg-2) ... Setting up libqt5printsupport5t64:amd64 (5.15.13+dfsg-2) ... Setting up qtbase5-dev:amd64 (5.15.13+dfsg-2) ... Setting up libqt5opengl5-dev:amd64 (5.15.13+dfsg-2) ... Setting up libheif-plugin-dav1d:amd64 (1.17.6-1+b2) ... Setting up libheif-plugin-libde265:amd64 (1.17.6-1+b2) ... Setting up libheif1:amd64 (1.17.6-1+b2) ... Setting up libmagickcore-6.q16-7t64:amd64 (8:6.9.12.98+dfsg1-5.2) ... Setting up libmagickwand-6.q16-7t64:amd64 (8:6.9.12.98+dfsg1-5.2) ... Setting up libgd3:amd64 (2.3.3-9+b3) ... Setting up libgvc6 (2.42.2-9+b1) ... Setting up imagemagick-6.q16 (8:6.9.12.98+dfsg1-5.2) ... update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode Setting up graphviz (2.42.2-9+b1) ... Setting up imagemagick (8:6.9.12.98+dfsg1-5.2) ... Processing triggers for libc-bin (2.38-11) ... Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.34-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/240904/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/240904/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/openms-2.6.0+cleaned1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../openms_2.6.0+cleaned1-4_source.changes dpkg-buildpackage: info: source package openms dpkg-buildpackage: info: source version 2.6.0+cleaned1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Anton Gladky dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --buildsystem=cmake --no-parallel dh_testdir -O--buildsystem=cmake -O--no-parallel dh_auto_clean -O--buildsystem=cmake -O--no-parallel dh_autoreconf_clean -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1' entering the override_dh_clean target # Remove the generated xpm icon files: rm -f debian/TOPPAS.xpm rm -f debian/TOPPView.xpm # Remove the generated topp.1 man page: rm -f debian/topp.1 dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libopenms2.6.0.substvars debian/libopenms-dev.substvars debian/topp.substvars debian/openms-common.substvars debian/openms-doc.substvars debian/openms.substvars debian/files rm -fr -- debian/libopenms2.6.0/ debian/tmp/ debian/libopenms-dev/ debian/topp/ debian/openms-common/ debian/openms-doc/ debian/openms/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) make[1]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1' debian/rules build dh build --buildsystem=cmake --no-parallel dh_testdir -O--buildsystem=cmake -O--no-parallel dh_update_autotools_config -O--buildsystem=cmake -O--no-parallel dh_autoreconf -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1' dh_auto_configure -- \ -DDEBIAN_BUILD=ON \ -DHAS_XSERVER=OFF \ -DCMAKE_FIND_LIBRARY_SUFFIXES=".so" \ -DCMAKE_SKIP_RPATH=ON \ -DCMAKE_INSTALL_PREFIX="/usr" \ -DOPENMS_CONTRIB_LIBS="/usr/lib;/usr/lib/x86_64-linux-gnu" \ -DCMAKE_BUILD_TYPE=release \ -DBOOST_USE_STATIC=OFF \ -DENABLE_STYLE_TESTING=OFF \ -DENABLE_TOPP_TESTING=OFF \ -DENABLE_CLASS_TESTING=OFF \ -DENABLE_PIPELINE_TESTING=OFF \ -DENABLE_TUTORIALS=ON \ -DSEQAN_INCLUDE_DIR=/build/reproducible-path/openms-2.6.0+cleaned1/debian cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DDEBIAN_BUILD=ON -DHAS_XSERVER=OFF -DCMAKE_FIND_LIBRARY_SUFFIXES=.so -DCMAKE_SKIP_RPATH=ON -DCMAKE_INSTALL_PREFIX=/usr -DOPENMS_CONTRIB_LIBS=/usr/lib\;/usr/lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE=release -DBOOST_USE_STATIC=OFF -DENABLE_STYLE_TESTING=OFF -DENABLE_TOPP_TESTING=OFF -DENABLE_CLASS_TESTING=OFF -DENABLE_PIPELINE_TESTING=OFF -DENABLE_TUTORIALS=ON -DSEQAN_INCLUDE_DIR=/build/reproducible-path/openms-2.6.0\+cleaned1/debian .. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at CMakeLists.txt:73 (include): Policy CMP0145 is not set: The Dart and FindDart modules are removed. Run "cmake --help-policy CMP0145" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /usr/share/cmake-3.29/Modules/Dart.cmake:47 (message): Policy CMP0145 is not set: The Dart and FindDart modules are removed. Run "cmake --help-policy CMP0145" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:73 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Building OpenMS 2.6.0 -- [CMake cannot track Git commits and branching, since Git or the .git folder was not found. ('-D GIT_TRACKING=On')] -- OpenMP support requested: ON -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Architecture: 64 bit -- Performing Test WITH_FPIC -- Performing Test WITH_FPIC - Success -- Compiler checks for conversion: OFF -- Collection of usage statistics and update notifications enabled. -- If you don't want this information to be transmitted to our update sever, you can: -- - Switch the build variable ENABLE_UPDATE_CHECK to OFF to remove the functionality at build time. -- - Set the environment variable OPENMS_DISABLE_UPDATE_CHECK to disable the functionality at runtime. CMake Deprecation Warning at src/openswathalgo/CMakeLists.txt:36 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found Boost: /usr/include (found suitable version "1.83.0", minimum required is "1.48.0") CMake Deprecation Warning at src/openswathalgo/thirdparty/CMakeLists.txt:36 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at src/openswathalgo/thirdparty/MIToolbox/CMakeLists.txt:36 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Adding library OpenSwathAlgo -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Adding library OpenSwathAlgo - SUCCESS CMake Deprecation Warning at src/openms/CMakeLists.txt:36 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at src/openms/thirdparty/CMakeLists.txt:36 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at src/openms/thirdparty/eol-bspline/CMakeLists.txt:36 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at src/openms/thirdparty/evergreen/src/CMakeLists.txt:36 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at src/openms/thirdparty/IsoSpec/CMakeLists.txt:36 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at src/openms/thirdparty/json/CMakeLists.txt:36 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found XercesC: /usr/lib/x86_64-linux-gnu/libxerces-c.so (found version "3.2.4") -- Found Boost: /usr/include (found suitable version "1.83.0", minimum required is "1.48.0") found components: iostreams date_time math_c99 regex -- Found Boost version 1.83.0 -- Found SEQAN: /build/reproducible-path/openms-2.6.0+cleaned1/debian (found suitable version "1.4.2", minimum required is "1.4.0") -- Found LIBSVM: /usr/lib/x86_64-linux-gnu/libsvm.so (found suitable version "3.2.4", minimum required is "2.91") -- Found COIN: /usr/include -- Found GLPK: /usr/lib/x86_64-linux-gnu/libglpk.so -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3.1") -- Found BZip2: /usr/lib/x86_64-linux-gnu/libbz2.so (found version "1.0.8") -- Looking for BZ2_bzCompressInit in /usr/lib/x86_64-linux-gnu/libbz2.so -- Looking for BZ2_bzCompressInit in /usr/lib/x86_64-linux-gnu/libbz2.so - found -- Found Eigen3: /usr/include/eigen3 (Required is at least version "3.3.4") -- Found WM5: /usr/include/libwildmagic CMake Warning (dev) at /usr/share/cmake-3.29/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (SQLite) does not match the name of the calling package (SQLITE). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/modules/FindSQLITE.cmake:201 (find_package_handle_standard_args) src/openms/cmake_findExternalLibs.cmake:134 (find_package) src/openms/CMakeLists.txt:70 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found SQLite: /usr/include (found version "3.45.3") -- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so;/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.10") found components: C CXX HL -- Found Qt 5.15.13 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Info: CF_OPENMS_DATA_PATH: -- Info: CF_OPENMS_DOC_PATH: -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned char -- Check size of unsigned char - done -- Check size of unsigned short -- Check size of unsigned short - done -- Check size of unsigned int -- Check size of unsigned int - done -- Check size of unsigned long -- Check size of unsigned long - done -- Check size of unsigned long long -- Check size of unsigned long long - done -- Check size of short -- Check size of short - done -- Check size of int -- Check size of int - done -- Check size of long -- Check size of long - done -- Check size of long long -- Check size of long long - done -- Check size of int32_t -- Check size of int32_t - done -- Check size of int64_t -- Check size of int64_t - done -- Check size of uint8_t -- Check size of uint8_t - done -- Check size of uint32_t -- Check size of uint32_t - done -- Check size of uint64_t -- Check size of uint64_t - done -- Looking for C++ include unistd.h -- Looking for C++ include unistd.h - found -- Looking for C++ include process.h -- Looking for C++ include process.h - not found -- Looking for C++ include time.h -- Looking for C++ include time.h - found -- Looking for C++ include sys/types.h -- Looking for C++ include sys/types.h - found -- Looking for C++ include sys/times.h -- Looking for C++ include sys/times.h - found -- Looking for C++ include sys/time.h -- Looking for C++ include sys/time.h - found -- Looking for C++ include sys/resource.h -- Looking for C++ include sys/resource.h - found -- Looking for C++ include stdint.h -- Looking for C++ include stdint.h - found -- Looking for kill -- Looking for kill - found -- Looking for sysconf -- Looking for sysconf - found -- Adding library OpenMS -- Adding library OpenMS - SUCCESS CMake Deprecation Warning at src/superhirn/CMakeLists.txt:36 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found Boost: /usr/include (found suitable version "1.83.0", minimum required is "1.48.0") -- Adding library SuperHirn -- Adding library SuperHirn - SUCCESS -- Adding library OpenMS_GUI -- Adding library OpenMS_GUI - SUCCESS -- No resource file (/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/INIFileEditor.rc) found for INIFileEditor. No icon will be embedded. -- No resource file (/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/SwathWizard.rc) found for SwathWizard. No icon will be embedded. -- No resource file (/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPAS.rc) found for TOPPAS. No icon will be embedded. -- No resource file (/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPView.rc) found for TOPPView. No icon will be embedded. CMake Deprecation Warning at src/tests/CMakeLists.txt:35 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Documentation is built (-D ENABLE_DOCS=On). -- Found Doxygen: /usr/bin/doxygen (found version "1.9.8") found components: doxygen dot CMake Warning (dev) at doc/CMakeLists.txt:142 (exec_program): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Enabled tutorials (-D ENABLE_TUTORIALS=On). -- -- ----------------------------------------------------------------- -- -- You have successfully configured OpenMS. -- -- For a full list of make targets execute: -- 'make targets' -- -- ----------------------------------------------------------------- -- -- Configuring done (7.5s) -- Generating done (2.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu # Prepare the xpm-formatted pixmaps for the Debian menu system. # Setting imagemagick to Build-Depends, for use of convert. convert src/openms_gui/source/VISUAL/ICONS/TOPPAS.png -resize 32x32 debian/TOPPAS.xpm convert src/openms_gui/source/VISUAL/ICONS/TOPPView.png -resize 32x32 debian/TOPPView.xpm make[1]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1' rm -f debian/libopenms-dev.debhelper.log debian/libopenms2.6.0.debhelper.log debian/openms-common.debhelper.log debian/openms-doc.debhelper.log debian/openms.debhelper.log debian/topp.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1' # Build the libs and executable binaries # Build the documentation, which needs a running XWindow server. We # thus use the doc_minimal target. # # ATTENTION, as of 20200514, the pdfLatex compilation fails with error # ! LaTeX Error: Command `\Bbbk' already defined. # This is why we commented out the doc_tutorials target below. # See also the override_dh_auto_configure target above, that disables # that specific doc_tutorials target. VERBOSE=1 \ dh_auto_build -- \ OpenMS GUI TOPP UTILS cd obj-x86_64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" OpenMS GUI TOPP UTILS VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/openms-2.6.0+cleaned1 -B/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 OpenMS make[3]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/openms-2.6.0+cleaned1 -B/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/CMakeFiles 53 make -f CMakeFiles/Makefile2 src/openms/CMakeFiles/OpenMS.dir/all make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/build.make src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/build.make src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 0%] Building CXX object src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/ALGO/MRMScoring.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenSwathAlgo_EXPORTS -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -MD -MT src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/ALGO/MRMScoring.cpp.o -MF CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/ALGO/MRMScoring.cpp.o.d -o CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/ALGO/MRMScoring.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/source/OPENSWATHALGO/ALGO/MRMScoring.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/ALGO/MRMScoring.h:43, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/source/OPENSWATHALGO/ALGO/MRMScoring.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h:194:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 194 | public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/ALGO/MRMScoring.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/ALGO/MRMScoring.h:46: /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/ALGO/StatsHelpers.h:69:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 69 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 0%] Building CXX object src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/ALGO/Scoring.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenSwathAlgo_EXPORTS -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -MD -MT src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/ALGO/Scoring.cpp.o -MF CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/ALGO/Scoring.cpp.o.d -o CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/ALGO/Scoring.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/source/OPENSWATHALGO/ALGO/Scoring.cpp [ 1%] Building CXX object src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/ALGO/StatsHelpers.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenSwathAlgo_EXPORTS -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -MD -MT src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/ALGO/StatsHelpers.cpp.o -MF CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/ALGO/StatsHelpers.cpp.o.d -o CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/ALGO/StatsHelpers.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/source/OPENSWATHALGO/ALGO/StatsHelpers.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/source/OPENSWATHALGO/ALGO/StatsHelpers.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/ALGO/StatsHelpers.h:69:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 69 | std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/include/c++/13/complex:45, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/ALGO/StatsHelpers.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/source/OPENSWATHALGO/ALGO/StatsHelpers.cpp: In function 'void OpenSwath::normalize(const std::vector&, double, std::vector&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/source/OPENSWATHALGO/ALGO/StatsHelpers.cpp:54:106: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = divides; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 54 | std::transform(intensities.begin(), intensities.end(), normalized_intensities.begin(), std::bind2nd(std::divides(), normalizer)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ [ 1%] Building CXX object src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/DataFrameWriter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenSwathAlgo_EXPORTS -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -MD -MT src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/DataFrameWriter.cpp.o -MF CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/DataFrameWriter.cpp.o.d -o CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/DataFrameWriter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/source/OPENSWATHALGO/DATAACCESS/DataFrameWriter.cpp [ 1%] Building CXX object src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenSwathAlgo_EXPORTS -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -MD -MT src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.cpp.o -MF CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.cpp.o.d -o CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/source/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/source/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h:194:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 194 | public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 1%] Building CXX object src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/MockObjects.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenSwathAlgo_EXPORTS -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -MD -MT src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/MockObjects.cpp.o -MF CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/MockObjects.cpp.o.d -o CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/MockObjects.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/source/OPENSWATHALGO/DATAACCESS/MockObjects.cpp [ 1%] Building CXX object src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/SpectrumHelpers.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenSwathAlgo_EXPORTS -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -MD -MT src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/SpectrumHelpers.cpp.o -MF CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/SpectrumHelpers.cpp.o.d -o CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/SpectrumHelpers.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/source/OPENSWATHALGO/DATAACCESS/SpectrumHelpers.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/SpectrumHelpers.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/source/OPENSWATHALGO/DATAACCESS/SpectrumHelpers.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h:194:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 194 | public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 1%] Building CXX object src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/TransitionHelper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenSwathAlgo_EXPORTS -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -MD -MT src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/TransitionHelper.cpp.o -MF CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/TransitionHelper.cpp.o.d -o CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/TransitionHelper.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/source/OPENSWATHALGO/DATAACCESS/TransitionHelper.cpp [ 1%] Building CXX object src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/Transitions.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenSwathAlgo_EXPORTS -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -MD -MT src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/Transitions.cpp.o -MF CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/Transitions.cpp.o.d -o CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/Transitions.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/source/OPENSWATHALGO/DATAACCESS/Transitions.cpp [ 1%] Linking CXX shared library ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenSwathAlgo.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libOpenSwathAlgo.so.2.6.0 -o ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/ALGO/MRMScoring.cpp.o CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/ALGO/Scoring.cpp.o CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/ALGO/StatsHelpers.cpp.o CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/DataFrameWriter.cpp.o CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.cpp.o CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/MockObjects.cpp.o CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/SpectrumHelpers.cpp.o CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/TransitionHelper.cpp.o CMakeFiles/OpenSwathAlgo.dir/source/OPENSWATHALGO/DATAACCESS/Transitions.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo && /usr/bin/cmake -E cmake_symlink_library ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 1%] Built target OpenSwathAlgo make -f src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/build.make src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/build.make src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 1%] Built target OpenMS_autogen_timestamp_deps make -f src/openms/CMakeFiles/OpenMS_autogen.dir/build.make src/openms/CMakeFiles/OpenMS_autogen.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS_autogen.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms/CMakeFiles/OpenMS_autogen.dir/build.make src/openms/CMakeFiles/OpenMS_autogen.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 1%] Automatic MOC for target OpenMS cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS_autogen.dir/AutogenInfo.json release AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/src/openms/include/OpenMS/config.h" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/src/openms/include/OpenMS/openms_package_version.h" AutoGen: Parsing "SRC:/obj-x86_64-linux-gnu/src/openms/include/OpenMS/openms_data_path.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/DECHARGING/MetaboliteFeatureDeconvolution.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/DECHARGING/FeatureDeconvolution.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentification.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationBase.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/DECHARGING/ILPDCWrapper.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationCID.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoring.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringBase.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringCID.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/DENOVO/DeNovoAlgorithm.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/DENOVO/DeNovoIdentification.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/DENOVO/DeNovoIonScoring.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/DENOVO/DeNovoPostScoring.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/AScore.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/AccurateMassSearchEngine.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/BasicProteinInferenceAlgorithm.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/BayesianProteinInferenceAlgorithm.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithm.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmAverage.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmBest.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmIdentity.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmPEPIons.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmPEPMatrix.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmRanks.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmSimilarity.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmWorst.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusMapMergerAlgorithm.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/FIAMSDataProcessor.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/FIAMSScheduler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/FalseDiscoveryRate.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/HiddenMarkovModel.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/IDBoostGraph.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/IDConflictResolverAlgorithm.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/IDDecoyProbability.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/IDMergerAlgorithm.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/IDMapper.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/IDRipper.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/IDScoreGetterSetter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/MessagePasserFactory.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/MetaboliteSpectralMatching.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/PeptideIndexing.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/IDScoreSwitcherAlgorithm.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/PeptideProteinResolution.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/PercolatorFeatureSetHelper.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/PrecursorPurity.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/ProtonDistributionModel.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/SimpleSearchEngineAlgorithm.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/SiriusAdapterAlgorithm.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/ID/SiriusMSConverter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseSuperimposer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmMedian.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmQuantile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmThreshold.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureDistance.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmKD.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmLabeled.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmQT.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmUnlabeled.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureMapping.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/LabeledPairFinder.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmIdentification.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmKD.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmPoseClustering.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmSpectrumAlignment.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmTreeGuided.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithm.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithmPrecision.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithmRecall.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentTransformer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/PoseClusteringAffineSuperimposer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/PoseClusteringShiftSuperimposer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/QTClusterFinder.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/SimplePairFinder.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/StablePairFinder.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/TransformationDescription.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/TransformationModel.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/TransformationModelBSpline.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/TransformationModelInterpolated.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/TransformationModelLinear.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/TransformationModelLowess.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MRM/MRMFragmentSelection.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/ChromatogramExtractor.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/ChromatogramExtractorAlgorithm.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/ConfidenceScoring.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SimpleOpenMSSpectraAccessFactory.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMS.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSCached.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSInMemory.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessQuadMZTransforming.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessSqMass.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessTransforming.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAHelper.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAPrescoring.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/IonMobilityScoring.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMAssay.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMBatchFeatureSelector.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMDecoy.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFilter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeaturePicker.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureQC.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureSelector.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMIonSeries.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMRTNormalizer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MasstraceCorrelator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathHelper.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathOSWWriter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathScores.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathScoring.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathTSVWriter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathWorkflow.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakIntegrator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SONARScoring.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SpectrumAddition.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SwathMapMassCorrection.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SwathQC.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SwathWindowLoader.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/TargetedSpectraExtractor.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/TransitionPQPFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/TransitionTSVFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/PIP/LocalLinearMap.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/PIP/PeakIntensityPredictor.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/AbsoluteQuantitation.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricChannelExtractor.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricIsotopeCorrector.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricNormalizer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantifier.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantifierStatistics.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/ItraqConstants.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/ItraqEightPlexQuantitationMethod.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/ItraqFourPlexQuantitationMethod.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureNode.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/PeptideAndProteinQuant.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/ProteinInference.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/ProteinResolver.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/QuantitativeExperimentalDesign.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/TMTElevenPlexQuantitationMethod.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/TMTSixPlexQuantitationMethod.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/TMTSixteenPlexQuantitationMethod.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/TMTTenPlexQuantitationMethod.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/RNPXL/HyperScore.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/RNPXL/ModifiedPeptideGenerator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/RNPXL/MorpheusScore.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/RNPXL/PScore.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/RNPXL/RNPxlFragmentAnnotationHelper.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/RNPXL/RNPxlMarkerIonExtractor.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/RNPXL/RNPxlModificationsGenerator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/RNPXL/RNPxlReport.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/SVM/SVMWrapper.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/SVM/SimpleSVM.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/TARGETED/IncludeExcludeTarget.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/TARGETED/InclusionExclusionList.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/TARGETED/MRMMapping.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/TARGETED/MetaboTargetedAssay.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/TARGETED/OfflinePrecursorIonSelection.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/TARGETED/PSLPFormulation.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/TARGETED/PSProteinInference.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/TARGETED/PrecursorIonSelection.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/TARGETED/PrecursorIonSelectionPreprocessing.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperimentHelper.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/XLMS/OPXLDataStructs.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/XLMS/OPXLHelper.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/XLMS/OPXLSpectrumProcessingAlgorithms.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/XLMS/OpenPepXLAlgorithm.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/XLMS/OpenPepXLLFAlgorithm.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/XLMS/XFDRAlgorithm.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/ANALYSIS/XLMS/XQuestScores.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/APPLICATIONS/ConsoleUtils.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/APPLICATIONS/INIUpdater.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/APPLICATIONS/MapAlignerBase.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/APPLICATIONS/OpenSwathBase.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/APPLICATIONS/ParameterInformation.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/APPLICATIONS/TOPPBase.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/APPLICATIONS/ToolHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/AAIndex.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/AASequence.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/CrossLinksDB.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/DecoyGenerator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/DigestionEnzyme.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/DigestionEnzymeDB.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/DigestionEnzymeProtein.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/DigestionEnzymeRNA.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/Element.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/ElementDB.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/EmpiricalFormula.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/EnzymaticDigestion.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/EnzymaticDigestionLogModel.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/CoarseIsotopePatternGenerator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/FineIsotopePatternGenerator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/IsoSpecWrapper.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopePatternGenerator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSAlphabet.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSAlphabetParser.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSAlphabetTextParser.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSElement.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSIsotopeDistribution.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/IntegerMassDecomposer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/MassDecomposer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/RealMassDecomposer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/Weights.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/MassDecomposition.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/MassDecompositionAlgorithm.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/ModificationDefinition.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/ModificationDefinitionsSet.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/ModificationsDB.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/ModifiedNASequenceGenerator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/NASequence.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/NucleicAcidSpectrumGenerator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/ProteaseDB.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/ProteaseDigestion.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/RNaseDB.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/RNaseDigestion.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/Residue.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/ResidueDB.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/ResidueModification.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/Ribonucleotide.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/RibonucleotideDB.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/SimpleTSGXLMS.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/SpectrumAnnotator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGenerator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGeneratorSet.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGeneratorTrainer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/Tagger.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGeneratorXLMS.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CHEMISTRY/WeightWrapper.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/COMPARISON/CLUSTERING/AverageLinkage.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/COMPARISON/CLUSTERING/ClusterAnalyzer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/COMPARISON/CLUSTERING/ClusterFunctor.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/COMPARISON/CLUSTERING/ClusterHierarchical.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/COMPARISON/CLUSTERING/ClusteringGrid.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/COMPARISON/CLUSTERING/CompleteLinkage.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/COMPARISON/CLUSTERING/EuclideanSimilarity.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/COMPARISON/CLUSTERING/GridBasedCluster.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/COMPARISON/CLUSTERING/GridBasedClustering.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/COMPARISON/CLUSTERING/HashGrid.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/COMPARISON/CLUSTERING/SingleLinkage.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSharedPeakCount.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectralContrastAngle.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrum.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSumAgreeingIntensities.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakAlignment.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectraSTSimilarityScore.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignment.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignmentScore.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumCheapDPCorr.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumPrecursorComparator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/COMPARISON/SPECTRA/SteinScottImproveScore.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/COMPARISON/SPECTRA/ZhangSimilarityScore.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CONCEPT/ClassTest.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CONCEPT/Constants.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CONCEPT/EnumHelpers.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CONCEPT/Exception.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CONCEPT/Factory.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CONCEPT/FactoryBase.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CONCEPT/FuzzyStringComparator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CONCEPT/GlobalExceptionHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CONCEPT/Helpers.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CONCEPT/Init.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CONCEPT/LogConfigHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CONCEPT/LogStream.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CONCEPT/Macros.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CONCEPT/MacrosTest.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CONCEPT/PrecisionWrapper.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CONCEPT/ProgressLogger.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CONCEPT/RAIICleanup.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CONCEPT/SingletonRegistry.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CONCEPT/StreamHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CONCEPT/TypeAsString.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CONCEPT/Types.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CONCEPT/UniqueIdGenerator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CONCEPT/UniqueIdIndexer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CONCEPT/UniqueIdInterface.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/CONCEPT/VersionInfo.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/Adduct.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/BinaryTreeNode.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/CVMappingRule.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/CVMappingTerm.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/CVMappings.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/CVReference.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/CalibrationData.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/ChargePair.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/Compomer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/ConstRefVector.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/ConvexHull2D.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/DBoundingBox.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/DRange.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/Date.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/DateTime.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/DistanceMatrix.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/FASTAContainer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/GridFeature.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/IsotopeCluster.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/KDTree.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/LPWrapper.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/ListUtils.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/ListUtilsIO.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/Map.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/MassExplainer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/MatchedIterator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/Matrix.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/Param.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/QTCluster.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/SeqanIncludeWrapper.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/String.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/StringListUtils.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/StringUtils.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/Utils/MapUtilities.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/DATASTRUCTURES/Utils/MatrixUtils.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/BASELINE/MorphologicalFilter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/CALIBRATION/InternalCalibration.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/CALIBRATION/MZTrafoModel.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/CALIBRATION/PrecursorCorrection.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/CALIBRATION/TOFCalibration.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/DATAREDUCTION/DataFilters.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/DATAREDUCTION/Deisotoper.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/DATAREDUCTION/ElutionPeakDetection.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/DATAREDUCTION/FeatureFindingMetabo.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/DATAREDUCTION/IsotopeDistributionCache.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/DATAREDUCTION/MassTraceDetection.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/DATAREDUCTION/SplineInterpolatedPeaks.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/DATAREDUCTION/SplinePackage.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMeanIterative.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedianRapid.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/SMOOTHING/FastLowessSmoothing.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/SMOOTHING/GaussFilter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/SMOOTHING/GaussFilterAlgorithm.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/SMOOTHING/LowessSmoothing.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/SMOOTHING/SavitzkyGolayFilter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/BernNorm.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/ComplementFilter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/ComplementMarker.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/FilterFunctor.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/GoodDiffFilter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/IntensityBalanceFilter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/IsotopeDiffFilter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/IsotopeMarker.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResampler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResamplerAlign.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/MarkerMower.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/NLargest.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/NeutralLossDiffFilter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/NeutralLossMarker.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/Normalizer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/ParentPeakMower.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/PeakMarker.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/Scaler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SpectraMerger.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SqrtMower.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/TICFilter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/ThresholdMower.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/WindowMower.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/AbsoluteQuantitationMethodFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/AbsoluteQuantitationStandardsFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/Base64.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/Bzip2Ifstream.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/Bzip2InputStream.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/CVMappingFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/CachedMzML.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/ChromeleonFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/CompressedInputSource.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/ConsensusXMLFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/ControlledVocabulary.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/CsvFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/DATAACCESS/CsiFingerIdMzTabWriter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/DATAACCESS/MSDataAggregatingConsumer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/DATAACCESS/MSDataCachedConsumer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/DATAACCESS/MSDataChainingConsumer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/DATAACCESS/MSDataSqlConsumer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/DATAACCESS/MSDataStoringConsumer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/DATAACCESS/MSDataTransformingConsumer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/DATAACCESS/MSDataWritingConsumer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/DATAACCESS/NoopMSDataConsumer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/DATAACCESS/SiriusFragmentAnnotation.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/DATAACCESS/SiriusMzTabWriter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/DATAACCESS/SwathFileConsumer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/DTA2DFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/DTAFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/EDTAFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/ExperimentalDesignFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/FASTAFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/FeatureXMLFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/FileHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/FileTypes.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/GzipIfstream.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/GzipInputStream.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/HANDLERS/AcqusHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/HANDLERS/CachedMzMLHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/HANDLERS/FidHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/HANDLERS/IndexedMzMLDecoder.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/HANDLERS/IndexedMzMLHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/HANDLERS/MascotXMLHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/HANDLERS/MzDataHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/HANDLERS/MzIdentMLDOMHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/HANDLERS/MzIdentMLHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/HANDLERS/MzMLHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/HANDLERS/MzMLHandlerHelper.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/HANDLERS/MzMLSpectrumDecoder.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/HANDLERS/MzMLSqliteHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/HANDLERS/MzMLSqliteSwathHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/HANDLERS/MzQuantMLHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/HANDLERS/MzXMLHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/HANDLERS/PTMXMLHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/HANDLERS/ParamXMLHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/HANDLERS/ToolDescriptionHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/HANDLERS/TraMLHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/HANDLERS/UnimodXMLHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/HANDLERS/XMLHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/HANDLERS/XQuestResultXMLHandler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/HDF5Connector.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/IBSpectraFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/IdXMLFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/IndexedMzMLFileLoader.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/InspectInfile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/InspectOutfile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/KroenikFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/LibSVMEncoder.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/MRMFeaturePickerFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/MRMFeatureQCFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/MS2File.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/MSNumpressCoder.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/MSPFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/MSPGenericFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/MSstatsFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/MascotGenericFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/MascotInfile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/MascotRemoteQuery.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/MascotXMLFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/MsInspectFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/MzDataFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/MzIdentMLFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/MzMLFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/MzQuantMLFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/MzTab.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/MzTabFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/MzXMLFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/OMSSACSVFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/OMSSAXMLFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/OPTIONS/FeatureFileOptions.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/OPTIONS/PeakFileOptions.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/OSWFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/PTMXMLFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/ParamXMLFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/PeakTypeEstimator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/PepNovoInfile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/PepNovoOutfile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/PepXMLFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/PepXMLFileMascot.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/PercolatorOutfile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/ProtXMLFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/QcMLFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/SVOutStream.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/SequestInfile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/SequestOutfile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/SpecArrayFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/SqMassFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/SqliteConnector.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/SwathFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/TextFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/ToolDescriptionFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/TraMLFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/TransformationXMLFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/UnimodXMLFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/VALIDATORS/MzDataValidator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/VALIDATORS/MzIdentMLValidator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/VALIDATORS/MzMLValidator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/VALIDATORS/MzQuantMLValidator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/VALIDATORS/SemanticValidator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/VALIDATORS/TraMLValidator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/VALIDATORS/XMLValidator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/XMLFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/XMassFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/XQuestResultXMLFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/XTandemInfile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/XTandemXMLFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/FORMAT/ZlibCompression.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/INTERFACES/DataStructures.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/INTERFACES/IMSDataConsumer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/INTERFACES/ISpectrumAccess.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/AreaIterator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/BaseFeature.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/ChromatogramTools.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/ConsensusMap.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/ConversionHelper.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/DPeak.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/Feature.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/FeatureHandle.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/FeatureMap.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/MRMFeature.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/MRMTransitionGroup.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/MSChromatogram.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/MSExperiment.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/MSSpectrum.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/MassTrace.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/OnDiscMSExperiment.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/Peak1D.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/Peak2D.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/PeakIndex.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/RangeManager.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/RangeUtils.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/RichPeak2D.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/SpectrumHelper.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/StandardDeclarations.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/KERNEL/StandardTypes.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/MISC/BSpline2d.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/MISC/BilinearInterpolation.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/MISC/CubicSpline2d.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/MISC/EmgGradientDescent.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/MISC/GridSearch.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/MISC/LinearInterpolation.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/MISC/MSNumpress.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/MISC/MathFunctions.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/MISC/NNLS/NNLS.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/MISC/NonNegativeLeastSquaresSolver.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/MISC/RANSAC.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/MISC/RANSACModel.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/MISC/RANSACModelLinear.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/MISC/RANSACModelQuadratic.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/MISC/SplineBisection.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/STATISTICS/AsymmetricStatistics.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/STATISTICS/AveragePosition.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/STATISTICS/BasicStatistics.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/STATISTICS/GammaDistributionFitter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/STATISTICS/GaussFitter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/STATISTICS/GumbelDistributionFitter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/STATISTICS/GumbelMaxLikelihoodFitter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/STATISTICS/Histogram.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/STATISTICS/LinearRegression.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/STATISTICS/LinearRegressionWithoutIntercept.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/STATISTICS/PosteriorErrorProbabilityModel.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/STATISTICS/QuadraticRegression.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/STATISTICS/ROCCurve.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/STATISTICS/RegressionUtils.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/MATH/STATISTICS/StatisticFunctions.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/AbsoluteQuantitationStandards.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/Acquisition.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/AcquisitionInfo.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/CVTerm.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/CVTermList.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/CVTermListInterface.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/ContactPerson.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/DataArrays.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/DataProcessing.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/Digestion.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/DocumentIDTagger.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/DocumentIdentifier.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/ExperimentalDesign.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/ExperimentalSettings.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/Gradient.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/HPLC.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/ID/AppliedProcessingStep.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/ID/DBSearchParam.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/ID/DataProcessingSoftware.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/ID/DataProcessingStep.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/ID/DataQuery.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/ID/IdentificationData.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/ID/IdentificationDataConverter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/ID/IdentifiedCompound.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/ID/IdentifiedSequence.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/ID/MetaData.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/ID/MoleculeParentMatch.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/ID/MoleculeQueryMatch.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/ID/ParentMolecule.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/ID/ParentMoleculeGroup.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/ID/QueryMatchGroup.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/ID/ScoreType.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/ID/ScoredProcessingResult.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/Identification.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/IdentificationHit.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/Instrument.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/InstrumentSettings.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/IonDetector.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/IonSource.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/MSQuantifications.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/MassAnalyzer.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/MetaInfo.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/MetaInfoDescription.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/MetaInfoInterface.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/MetaInfoInterfaceUtils.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/MetaInfoRegistry.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/Modification.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/PeptideEvidence.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/PeptideHit.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/PeptideIdentification.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/Precursor.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/Product.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/ProteinHit.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/ProteinIdentification.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/Sample.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/SampleTreatment.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/ScanWindow.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/Software.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/SourceFile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/SpectrumIdentification.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/SpectrumLookup.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/SpectrumMetaDataLookup.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/SpectrumSettings.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/METADATA/Tagging.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/QC/Contaminants.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/QC/DBSuitability.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/QC/FWHM.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/QC/FragmentMassError.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/QC/MissedCleavages.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/QC/Ms2IdentificationRate.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/QC/Ms2SpectrumStats.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/QC/MzCalibration.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/QC/PeptideMass.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/QC/QCBase.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/QC/RTAlignment.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/QC/TIC.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SIMULATION/DetectabilitySimulation.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SIMULATION/DigestSimulation.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SIMULATION/EGHFitter1D.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SIMULATION/EGHModel.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SIMULATION/IonizationSimulation.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler_impl.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SIMULATION/LABELING/ICPLLabeler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SIMULATION/LABELING/ITRAQLabeler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SIMULATION/LABELING/LabelFreeLabeler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SIMULATION/LABELING/O18Labeler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SIMULATION/LABELING/SILACLabeler.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SIMULATION/MSSim.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SIMULATION/RTSimulation.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SIMULATION/RawMSSignalSimulation.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SIMULATION/RawTandemMSSignalSimulation.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SIMULATION/SimTypes.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SYSTEM/BuildInfo.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SYSTEM/ExternalProcess.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SYSTEM/File.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SYSTEM/FileWatcher.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SYSTEM/JavaInfo.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SYSTEM/NetworkGetRequest.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SYSTEM/PythonInfo.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SYSTEM/RWrapper.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SYSTEM/StopWatch.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SYSTEM/SysInfo.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/SYSTEM/UpdateCheck.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel_impl.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BiGaussFitter1D.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BiGaussModel.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EGHTraceFitter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ElutionModelFitter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgModel.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeFitter1D.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeModel.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmIsotopeWavelet.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmMRM.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPicked.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPickedHelperStructs.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderDefs.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderIdentificationAlgorithm.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderMultiplexAlgorithm.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussFitter1D.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussModel.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussTraceFitter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeFitter1D.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeModel.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeWavelet.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeWaveletConstants.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeWaveletTransform.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ModelDescription.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexClustering.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexDeltaMasses.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexDeltaMassesGenerator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredMSExperiment.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredPeak.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexFiltering.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringCentroided.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringProfile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexIsotopicPeakPattern.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexSatelliteCentroided.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexSatelliteProfile.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/PeakWidthEstimator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ProductModel.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SeedListGenerator.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransform.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransformNumIntegration.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/OptimizePeakDeconvolution.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/OptimizePick.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerCWT.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerIterative.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerMaxima.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerSH.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakShape.h" AutoGen: Parsing "SRC:/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/TwoDOptimization.h" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/DECHARGING/FeatureDeconvolution.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/DECHARGING/ILPDCWrapper.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/DECHARGING/MetaboliteFeatureDeconvolution.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/DENOVO/CompNovoIdentification.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/DENOVO/CompNovoIdentificationBase.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/DENOVO/CompNovoIdentificationCID.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/DENOVO/CompNovoIonScoring.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/DENOVO/CompNovoIonScoringBase.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/DENOVO/CompNovoIonScoringCID.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/DENOVO/DeNovoAlgorithm.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/DENOVO/DeNovoIdentification.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/DENOVO/DeNovoIonScoring.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/DENOVO/DeNovoPostScoring.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/AScore.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/AccurateMassSearchEngine.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/AhoCorasickAmbiguous.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/BasicProteinInferenceAlgorithm.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/BayesianProteinInferenceAlgorithm.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithm.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithmAverage.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithmBest.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithmIdentity.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithmPEPIons.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithmPEPMatrix.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithmRanks.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithmSimilarity.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithmWorst.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/ConsensusMapMergerAlgorithm.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/FIAMSDataProcessor.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/FIAMSScheduler.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/FalseDiscoveryRate.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/HiddenMarkovModel.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/IDBoostGraph.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/IDConflictResolverAlgorithm.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/IDDecoyProbability.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/IDMapper.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/IDMergerAlgorithm.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/IDRipper.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/IDScoreGetterSetter.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/IDScoreSwitcherAlgorithm.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/MessagePasserFactory.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/MetaboliteSpectralMatching.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/PeptideIndexing.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/PeptideProteinResolution.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/PercolatorFeatureSetHelper.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/PrecursorPurity.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/ProtonDistributionModel.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/SimpleSearchEngineAlgorithm.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/SiriusAdapterAlgorithm.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/ID/SiriusMSConverter.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/BaseGroupFinder.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/BaseSuperimposer.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmMedian.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmQuantile.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmThreshold.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/FeatureDistance.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmKD.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmLabeled.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmQT.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmUnlabeled.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/FeatureMapping.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/LabeledPairFinder.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmIdentification.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmKD.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmPoseClustering.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmSpectrumAlignment.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmTreeGuided.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithm.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithmPrecision.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithmRecall.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentTransformer.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/PoseClusteringAffineSuperimposer.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/PoseClusteringShiftSuperimposer.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/QTClusterFinder.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/SimplePairFinder.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/StablePairFinder.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/TransformationDescription.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/TransformationModel.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/TransformationModelBSpline.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/TransformationModelInterpolated.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/TransformationModelLinear.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MAPMATCHING/TransformationModelLowess.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MRM/MRMFragmentSelection.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/MRM/ReactionMonitoringTransition.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/ChromatogramExtractor.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/ChromatogramExtractorAlgorithm.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/ConfidenceScoring.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/SimpleOpenMSSpectraAccessFactory.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMS.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSCached.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSInMemory.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessQuadMZTransforming.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessSqMass.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessTransforming.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/DIAHelper.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/DIAPrescoring.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/DIAScoring.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/IonMobilityScoring.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/MRMAssay.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/MRMBatchFeatureSelector.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/MRMDecoy.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/MRMFeatureFilter.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/MRMFeaturePicker.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/MRMFeatureQC.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/MRMFeatureSelector.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/MRMIonSeries.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/MRMRTNormalizer.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/MasstraceCorrelator.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/OpenSwathHelper.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/OpenSwathOSWWriter.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/OpenSwathScores.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/OpenSwathScoring.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/OpenSwathTSVWriter.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/OpenSwathWorkflow.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/PeakIntegrator.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/PeakPickerMRM.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/SONARScoring.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/SpectrumAddition.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/SwathMapMassCorrection.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/SwathQC.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/SwathWindowLoader.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/TargetedSpectraExtractor.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/TransitionPQPFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/OPENSWATH/TransitionTSVFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/PIP/LocalLinearMap.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/PIP/PeakIntensityPredictor.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/QUANTITATION/AbsoluteQuantitation.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/QUANTITATION/IsobaricChannelExtractor.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/QUANTITATION/IsobaricIsotopeCorrector.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/QUANTITATION/IsobaricNormalizer.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/QUANTITATION/IsobaricQuantifier.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/QUANTITATION/IsobaricQuantifierStatistics.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/QUANTITATION/ItraqConstants.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/QUANTITATION/ItraqEightPlexQuantitationMethod.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/QUANTITATION/ItraqFourPlexQuantitationMethod.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/QUANTITATION/KDTreeFeatureNode.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/QUANTITATION/PeptideAndProteinQuant.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/QUANTITATION/ProteinInference.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/QUANTITATION/ProteinResolver.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/QUANTITATION/QuantitativeExperimentalDesign.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/QUANTITATION/TMTElevenPlexQuantitationMethod.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/QUANTITATION/TMTSixPlexQuantitationMethod.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/QUANTITATION/TMTSixteenPlexQuantitationMethod.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/QUANTITATION/TMTTenPlexQuantitationMethod.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/RNPXL/HyperScore.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/RNPXL/ModifiedPeptideGenerator.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/RNPXL/MorpheusScore.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/RNPXL/PScore.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/RNPXL/RNPxlFragmentAnnotationHelper.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/RNPXL/RNPxlMarkerIonExtractor.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/RNPXL/RNPxlModificationsGenerator.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/RNPXL/RNPxlReport.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/SVM/SVMWrapper.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/SVM/SimpleSVM.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/TARGETED/IncludeExcludeTarget.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/TARGETED/InclusionExclusionList.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/TARGETED/MRMMapping.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/TARGETED/MetaboTargetedAssay.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/TARGETED/OfflinePrecursorIonSelection.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/TARGETED/PSLPFormulation.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/TARGETED/PSProteinInference.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/TARGETED/PrecursorIonSelection.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/TARGETED/PrecursorIonSelectionPreprocessing.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/TARGETED/TargetedExperiment.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/TARGETED/TargetedExperimentHelper.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/XLMS/OPXLDataStructs.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/XLMS/OPXLHelper.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/XLMS/OPXLSpectrumProcessingAlgorithms.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/XLMS/OpenPepXLAlgorithm.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/XLMS/OpenPepXLLFAlgorithm.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/XLMS/XFDRAlgorithm.cpp" AutoGen: Parsing "SRC:/src/openms/source/ANALYSIS/XLMS/XQuestScores.cpp" AutoGen: Parsing "SRC:/src/openms/source/APPLICATIONS/ConsoleUtils.cpp" AutoGen: Parsing "SRC:/src/openms/source/APPLICATIONS/INIUpdater.cpp" AutoGen: Parsing "SRC:/src/openms/source/APPLICATIONS/ParameterInformation.cpp" AutoGen: Parsing "SRC:/src/openms/source/APPLICATIONS/TOPPBase.cpp" AutoGen: Parsing "SRC:/src/openms/source/APPLICATIONS/ToolHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/AASequence.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/CrossLinksDB.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/DecoyGenerator.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/DigestionEnzyme.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/DigestionEnzymeDB.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/DigestionEnzymeProtein.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/DigestionEnzymeRNA.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/Element.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/ElementDB.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/EmpiricalFormula.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/EnzymaticDigestion.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/EnzymaticDigestionLogModel.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/CoarseIsotopePatternGenerator.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/FineIsotopePatternGenerator.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsoSpecWrapper.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopePatternGenerator.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSAlphabet.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSAlphabetTextParser.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSElement.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSIsotopeDistribution.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/MASSDECOMPOSITION/IMS/RealMassDecomposer.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/MASSDECOMPOSITION/IMS/Weights.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/MASSDECOMPOSITION/MassDecomposition.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/MASSDECOMPOSITION/MassDecompositionAlgorithm.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/ModificationDefinition.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/ModificationDefinitionsSet.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/ModificationsDB.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/ModifiedNASequenceGenerator.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/NASequence.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/NucleicAcidSpectrumGenerator.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/ProteaseDB.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/ProteaseDigestion.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/RNaseDB.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/RNaseDigestion.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/Residue.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/ResidueDB.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/ResidueModification.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/Ribonucleotide.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/RibonucleotideDB.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/SimpleTSGXLMS.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/SpectrumAnnotator.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/SvmTheoreticalSpectrumGenerator.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/SvmTheoreticalSpectrumGeneratorSet.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/SvmTheoreticalSpectrumGeneratorTrainer.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/Tagger.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/TheoreticalSpectrumGenerator.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/TheoreticalSpectrumGeneratorXLMS.cpp" AutoGen: Parsing "SRC:/src/openms/source/CHEMISTRY/WeightWrapper.cpp" AutoGen: Parsing "SRC:/src/openms/source/COMPARISON/CLUSTERING/AverageLinkage.cpp" AutoGen: Parsing "SRC:/src/openms/source/COMPARISON/CLUSTERING/ClusterAnalyzer.cpp" AutoGen: Parsing "SRC:/src/openms/source/COMPARISON/CLUSTERING/ClusterFunctor.cpp" AutoGen: Parsing "SRC:/src/openms/source/COMPARISON/CLUSTERING/ClusterHierarchical.cpp" AutoGen: Parsing "SRC:/src/openms/source/COMPARISON/CLUSTERING/ClusteringGrid.cpp" AutoGen: Parsing "SRC:/src/openms/source/COMPARISON/CLUSTERING/CompleteLinkage.cpp" AutoGen: Parsing "SRC:/src/openms/source/COMPARISON/CLUSTERING/EuclideanSimilarity.cpp" AutoGen: Parsing "SRC:/src/openms/source/COMPARISON/CLUSTERING/GridBasedCluster.cpp" AutoGen: Parsing "SRC:/src/openms/source/COMPARISON/CLUSTERING/GridBasedClustering.cpp" AutoGen: Parsing "SRC:/src/openms/source/COMPARISON/CLUSTERING/SingleLinkage.cpp" AutoGen: Parsing "SRC:/src/openms/source/COMPARISON/SPECTRA/BinnedSharedPeakCount.cpp" AutoGen: Parsing "SRC:/src/openms/source/COMPARISON/SPECTRA/BinnedSpectralContrastAngle.cpp" AutoGen: Parsing "SRC:/src/openms/source/COMPARISON/SPECTRA/BinnedSpectrum.cpp" AutoGen: Parsing "SRC:/src/openms/source/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.cpp" AutoGen: Parsing "SRC:/src/openms/source/COMPARISON/SPECTRA/BinnedSumAgreeingIntensities.cpp" AutoGen: Parsing "SRC:/src/openms/source/COMPARISON/SPECTRA/PeakAlignment.cpp" AutoGen: Parsing "SRC:/src/openms/source/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.cpp" AutoGen: Parsing "SRC:/src/openms/source/COMPARISON/SPECTRA/SpectraSTSimilarityScore.cpp" AutoGen: Parsing "SRC:/src/openms/source/COMPARISON/SPECTRA/SpectrumAlignment.cpp" AutoGen: Parsing "SRC:/src/openms/source/COMPARISON/SPECTRA/SpectrumAlignmentScore.cpp" AutoGen: Parsing "SRC:/src/openms/source/COMPARISON/SPECTRA/SpectrumCheapDPCorr.cpp" AutoGen: Parsing "SRC:/src/openms/source/COMPARISON/SPECTRA/SpectrumPrecursorComparator.cpp" AutoGen: Parsing "SRC:/src/openms/source/COMPARISON/SPECTRA/SteinScottImproveScore.cpp" AutoGen: Parsing "SRC:/src/openms/source/COMPARISON/SPECTRA/ZhangSimilarityScore.cpp" AutoGen: Parsing "SRC:/src/openms/source/CONCEPT/ClassTest.cpp" AutoGen: Parsing "SRC:/src/openms/source/CONCEPT/Constants.cpp" AutoGen: Parsing "SRC:/src/openms/source/CONCEPT/Exception.cpp" AutoGen: Parsing "SRC:/src/openms/source/CONCEPT/FuzzyStringComparator.cpp" AutoGen: Parsing "SRC:/src/openms/source/CONCEPT/GlobalExceptionHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/CONCEPT/Init.cpp" AutoGen: Parsing "SRC:/src/openms/source/CONCEPT/LogConfigHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/CONCEPT/LogStream.cpp" AutoGen: Parsing "SRC:/src/openms/source/CONCEPT/PrecisionWrapper.cpp" AutoGen: Parsing "SRC:/src/openms/source/CONCEPT/ProgressLogger.cpp" AutoGen: Parsing "SRC:/src/openms/source/CONCEPT/RAIICleanup.cpp" AutoGen: Parsing "SRC:/src/openms/source/CONCEPT/SingletonRegistry.cpp" AutoGen: Parsing "SRC:/src/openms/source/CONCEPT/StreamHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/CONCEPT/TypeAsString.cpp" AutoGen: Parsing "SRC:/src/openms/source/CONCEPT/Types.cpp" AutoGen: Parsing "SRC:/src/openms/source/CONCEPT/UniqueIdGenerator.cpp" AutoGen: Parsing "SRC:/src/openms/source/CONCEPT/UniqueIdIndexer.cpp" AutoGen: Parsing "SRC:/src/openms/source/CONCEPT/UniqueIdInterface.cpp" AutoGen: Parsing "SRC:/src/openms/source/CONCEPT/VersionInfo.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/Adduct.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/BinaryTreeNode.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/CVMappingRule.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/CVMappingTerm.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/CVMappings.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/CVReference.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/CalibrationData.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/ChargePair.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/Compomer.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/ConstRefVector.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/ConvexHull2D.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/DBoundingBox.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/DIntervalBase.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/DPosition.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/DRange.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/DataValue.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/Date.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/DateTime.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/DefaultParamHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/DistanceMatrix.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/FASTAContainer.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/GridFeature.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/LPWrapper.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/ListUtils.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/ListUtilsIO.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/Map.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/MassExplainer.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/MatchedIterator.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/Matrix.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/Param.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/QTCluster.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/String.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/StringListUtils.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/StringUtils.cpp" AutoGen: Parsing "SRC:/src/openms/source/DATASTRUCTURES/ToolDescription.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/BASELINE/MorphologicalFilter.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/CALIBRATION/InternalCalibration.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/CALIBRATION/MZTrafoModel.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/CALIBRATION/PrecursorCorrection.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/CALIBRATION/TOFCalibration.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/DATAREDUCTION/DataFilters.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/DATAREDUCTION/Deisotoper.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/DATAREDUCTION/ElutionPeakDetection.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/DATAREDUCTION/FeatureFindingMetabo.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/DATAREDUCTION/IsotopeDistributionCache.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/DATAREDUCTION/MassTraceDetection.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/DATAREDUCTION/SplineInterpolatedPeaks.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/DATAREDUCTION/SplinePackage.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/ID/IDFilter.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMeanIterative.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedianRapid.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/SMOOTHING/FastLowessSmoothing.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/SMOOTHING/GaussFilter.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/SMOOTHING/GaussFilterAlgorithm.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/SMOOTHING/LowessSmoothing.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/SMOOTHING/SavitzkyGolayFilter.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/TRANSFORMERS/BernNorm.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/TRANSFORMERS/ComplementFilter.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/TRANSFORMERS/ComplementMarker.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/TRANSFORMERS/FilterFunctor.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/TRANSFORMERS/GoodDiffFilter.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/TRANSFORMERS/IntensityBalanceFilter.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/TRANSFORMERS/IsotopeDiffFilter.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/TRANSFORMERS/IsotopeMarker.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/TRANSFORMERS/LinearResampler.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/TRANSFORMERS/MarkerMower.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/TRANSFORMERS/NLargest.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/TRANSFORMERS/NeutralLossDiffFilter.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/TRANSFORMERS/NeutralLossMarker.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/TRANSFORMERS/Normalizer.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/TRANSFORMERS/ParentPeakMower.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/TRANSFORMERS/PeakMarker.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/TRANSFORMERS/Scaler.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/TRANSFORMERS/SpectraMerger.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/TRANSFORMERS/SqrtMower.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/TRANSFORMERS/TICFilter.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/TRANSFORMERS/ThresholdMower.cpp" AutoGen: Parsing "SRC:/src/openms/source/FILTERING/TRANSFORMERS/WindowMower.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/AbsoluteQuantitationMethodFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/AbsoluteQuantitationStandardsFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/Base64.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/Bzip2Ifstream.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/Bzip2InputStream.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/CVMappingFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/CachedMzML.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/ChromeleonFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/CompressedInputSource.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/ConsensusXMLFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/ControlledVocabulary.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/CsvFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/DATAACCESS/CsiFingerIdMzTabWriter.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/DATAACCESS/MSDataAggregatingConsumer.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/DATAACCESS/MSDataCachedConsumer.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/DATAACCESS/MSDataChainingConsumer.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/DATAACCESS/MSDataSqlConsumer.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/DATAACCESS/MSDataStoringConsumer.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/DATAACCESS/MSDataTransformingConsumer.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/DATAACCESS/MSDataWritingConsumer.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/DATAACCESS/NoopMSDataConsumer.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/DATAACCESS/SiriusFragmentAnnotation.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/DATAACCESS/SiriusMzTabWriter.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/DATAACCESS/SwathFileConsumer.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/DTA2DFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/DTAFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/EDTAFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/ExperimentalDesignFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/FASTAFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/FeatureXMLFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/FileHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/FileTypes.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/GzipIfstream.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/GzipInputStream.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/HANDLERS/AcqusHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/HANDLERS/CachedMzMLHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/HANDLERS/FidHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/HANDLERS/IndexedMzMLDecoder.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/HANDLERS/IndexedMzMLHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/HANDLERS/MascotXMLHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/HANDLERS/MzDataHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/HANDLERS/MzIdentMLDOMHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/HANDLERS/MzIdentMLHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/HANDLERS/MzMLHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/HANDLERS/MzMLHandlerHelper.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/HANDLERS/MzMLSpectrumDecoder.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/HANDLERS/MzMLSqliteHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/HANDLERS/MzMLSqliteSwathHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/HANDLERS/MzQuantMLHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/HANDLERS/MzXMLHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/HANDLERS/PTMXMLHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/HANDLERS/ParamXMLHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/HANDLERS/ToolDescriptionHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/HANDLERS/TraMLHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/HANDLERS/UnimodXMLHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/HANDLERS/XMLHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/HANDLERS/XQuestResultXMLHandler.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/HDF5Connector.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/IBSpectraFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/IdXMLFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/IndexedMzMLFileLoader.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/InspectInfile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/InspectOutfile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/KroenikFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/LibSVMEncoder.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/MRMFeaturePickerFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/MRMFeatureQCFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/MS2File.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/MSNumpressCoder.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/MSPFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/MSPGenericFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/MSstatsFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/MascotGenericFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/MascotInfile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/MascotRemoteQuery.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/MascotXMLFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/MsInspectFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/MzDataFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/MzIdentMLFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/MzMLFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/MzQuantMLFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/MzTab.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/MzTabFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/MzXMLFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/OMSSACSVFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/OMSSAXMLFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/OPTIONS/FeatureFileOptions.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/OPTIONS/PeakFileOptions.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/OSWFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/PTMXMLFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/ParamXMLFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/PeakTypeEstimator.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/PepNovoInfile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/PepNovoOutfile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/PepXMLFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/PepXMLFileMascot.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/PercolatorOutfile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/ProtXMLFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/QcMLFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/SVOutStream.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/SequestInfile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/SequestOutfile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/SpecArrayFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/SqMassFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/SqliteConnector.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/SwathFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/TextFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/ToolDescriptionFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/TraMLFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/TransformationXMLFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/UnimodXMLFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/VALIDATORS/MzDataValidator.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/VALIDATORS/MzIdentMLValidator.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/VALIDATORS/MzMLValidator.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/VALIDATORS/MzQuantMLValidator.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/VALIDATORS/SemanticValidator.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/VALIDATORS/TraMLValidator.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/VALIDATORS/XMLValidator.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/XMLFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/XMassFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/XQuestResultXMLFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/XTandemInfile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/XTandemXMLFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/FORMAT/ZlibCompression.cpp" AutoGen: Parsing "SRC:/src/openms/source/INTERFACES_IMPL/MockImplementation.cpp" AutoGen: Parsing "SRC:/src/openms/source/KERNEL/AreaIterator.cpp" AutoGen: Parsing "SRC:/src/openms/source/KERNEL/BaseFeature.cpp" AutoGen: Parsing "SRC:/src/openms/source/KERNEL/ChromatogramPeak.cpp" AutoGen: Parsing "SRC:/src/openms/source/KERNEL/ChromatogramTools.cpp" AutoGen: Parsing "SRC:/src/openms/source/KERNEL/ConsensusFeature.cpp" AutoGen: Parsing "SRC:/src/openms/source/KERNEL/ConsensusMap.cpp" AutoGen: Parsing "SRC:/src/openms/source/KERNEL/ConversionHelper.cpp" AutoGen: Parsing "SRC:/src/openms/source/KERNEL/DPeak.cpp" AutoGen: Parsing "SRC:/src/openms/source/KERNEL/Feature.cpp" AutoGen: Parsing "SRC:/src/openms/source/KERNEL/FeatureHandle.cpp" AutoGen: Parsing "SRC:/src/openms/source/KERNEL/FeatureMap.cpp" AutoGen: Parsing "SRC:/src/openms/source/KERNEL/MRMFeature.cpp" AutoGen: Parsing "SRC:/src/openms/source/KERNEL/MRMTransitionGroup.cpp" AutoGen: Parsing "SRC:/src/openms/source/KERNEL/MSChromatogram.cpp" AutoGen: Parsing "SRC:/src/openms/source/KERNEL/MSExperiment.cpp" AutoGen: Parsing "SRC:/src/openms/source/KERNEL/MSSpectrum.cpp" AutoGen: Parsing "SRC:/src/openms/source/KERNEL/MassTrace.cpp" AutoGen: Parsing "SRC:/src/openms/source/KERNEL/OnDiscMSExperiment.cpp" AutoGen: Parsing "SRC:/src/openms/source/KERNEL/Peak1D.cpp" AutoGen: Parsing "SRC:/src/openms/source/KERNEL/Peak2D.cpp" AutoGen: Parsing "SRC:/src/openms/source/KERNEL/PeakIndex.cpp" AutoGen: Parsing "SRC:/src/openms/source/KERNEL/RangeManager.cpp" AutoGen: Parsing "SRC:/src/openms/source/KERNEL/RichPeak2D.cpp" AutoGen: Parsing "SRC:/src/openms/source/KERNEL/SpectrumHelper.cpp" AutoGen: Parsing "SRC:/src/openms/source/KERNEL/StandardTypes.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/MISC/BSpline2d.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/MISC/BilinearInterpolation.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/MISC/CubicSpline2d.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/MISC/EmgGradientDescent.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/MISC/GridSearch.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/MISC/LinearInterpolation.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/MISC/MSNumpress.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/MISC/MathFunctions.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/MISC/NNLS/NNLS.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/MISC/NonNegativeLeastSquaresSolver.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/MISC/RANSAC.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/MISC/RANSACModel.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/MISC/RANSACModelLinear.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/MISC/RANSACModelQuadratic.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/MISC/SplineBisection.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/STATISTICS/AsymmetricStatistics.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/STATISTICS/AveragePosition.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/STATISTICS/BasicStatistics.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/STATISTICS/GammaDistributionFitter.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/STATISTICS/GaussFitter.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/STATISTICS/GumbelDistributionFitter.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/STATISTICS/GumbelMaxLikelihoodFitter.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/STATISTICS/Histogram.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/STATISTICS/LinearRegression.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/STATISTICS/LinearRegressionWithoutIntercept.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/STATISTICS/PosteriorErrorProbabilityModel.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/STATISTICS/QuadraticRegression.cpp" AutoGen: Parsing "SRC:/src/openms/source/MATH/STATISTICS/ROCCurve.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/AbsoluteQuantitationStandards.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/Acquisition.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/AcquisitionInfo.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/CVTerm.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/CVTermList.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/CVTermListInterface.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/ChromatogramSettings.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/ContactPerson.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/DataArrays.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/DataProcessing.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/Digestion.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/DocumentIDTagger.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/DocumentIdentifier.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/ExperimentalDesign.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/ExperimentalSettings.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/Gradient.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/HPLC.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/ID/IdentificationData.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/ID/IdentificationDataConverter.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/Identification.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/IdentificationHit.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/Instrument.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/InstrumentSettings.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/IonDetector.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/IonSource.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/MSQuantifications.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/MassAnalyzer.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/MetaInfo.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/MetaInfoDescription.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/MetaInfoInterface.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/MetaInfoRegistry.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/Modification.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/PeptideEvidence.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/PeptideHit.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/PeptideIdentification.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/Precursor.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/Product.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/ProteinHit.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/ProteinIdentification.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/Sample.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/SampleTreatment.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/ScanWindow.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/Software.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/SourceFile.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/SpectrumIdentification.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/SpectrumLookup.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/SpectrumMetaDataLookup.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/SpectrumSettings.cpp" AutoGen: Parsing "SRC:/src/openms/source/METADATA/Tagging.cpp" AutoGen: Parsing "SRC:/src/openms/source/QC/Contaminants.cpp" AutoGen: Parsing "SRC:/src/openms/source/QC/DBSuitability.cpp" AutoGen: Parsing "SRC:/src/openms/source/QC/FWHM.cpp" AutoGen: Parsing "SRC:/src/openms/source/QC/FragmentMassError.cpp" AutoGen: Parsing "SRC:/src/openms/source/QC/MissedCleavages.cpp" AutoGen: Parsing "SRC:/src/openms/source/QC/Ms2IdentificationRate.cpp" AutoGen: Parsing "SRC:/src/openms/source/QC/Ms2SpectrumStats.cpp" AutoGen: Parsing "SRC:/src/openms/source/QC/MzCalibration.cpp" AutoGen: Parsing "SRC:/src/openms/source/QC/PeptideMass.cpp" AutoGen: Parsing "SRC:/src/openms/source/QC/QCBase.cpp" AutoGen: Parsing "SRC:/src/openms/source/QC/RTAlignment.cpp" AutoGen: Parsing "SRC:/src/openms/source/QC/TIC.cpp" AutoGen: Parsing "SRC:/src/openms/source/SIMULATION/DetectabilitySimulation.cpp" AutoGen: Parsing "SRC:/src/openms/source/SIMULATION/DigestSimulation.cpp" AutoGen: Parsing "SRC:/src/openms/source/SIMULATION/EGHFitter1D.cpp" AutoGen: Parsing "SRC:/src/openms/source/SIMULATION/EGHModel.cpp" AutoGen: Parsing "SRC:/src/openms/source/SIMULATION/IonizationSimulation.cpp" AutoGen: Parsing "SRC:/src/openms/source/SIMULATION/LABELING/BaseLabeler.cpp" AutoGen: Parsing "SRC:/src/openms/source/SIMULATION/LABELING/ICPLLabeler.cpp" AutoGen: Parsing "SRC:/src/openms/source/SIMULATION/LABELING/ITRAQLabeler.cpp" AutoGen: Parsing "SRC:/src/openms/source/SIMULATION/LABELING/LabelFreeLabeler.cpp" AutoGen: Parsing "SRC:/src/openms/source/SIMULATION/LABELING/O18Labeler.cpp" AutoGen: Parsing "SRC:/src/openms/source/SIMULATION/LABELING/SILACLabeler.cpp" AutoGen: Parsing "SRC:/src/openms/source/SIMULATION/MSSim.cpp" AutoGen: Parsing "SRC:/src/openms/source/SIMULATION/RTSimulation.cpp" AutoGen: Parsing "SRC:/src/openms/source/SIMULATION/RawMSSignalSimulation.cpp" AutoGen: Parsing "SRC:/src/openms/source/SIMULATION/RawTandemMSSignalSimulation.cpp" AutoGen: Parsing "SRC:/src/openms/source/SYSTEM/ExternalProcess.cpp" AutoGen: Parsing "SRC:/src/openms/source/SYSTEM/File.cpp" AutoGen: Parsing "SRC:/src/openms/source/SYSTEM/FileWatcher.cpp" AutoGen: Parsing "SRC:/src/openms/source/SYSTEM/JavaInfo.cpp" AutoGen: Parsing "SRC:/src/openms/source/SYSTEM/NetworkGetRequest.cpp" AutoGen: Parsing "SRC:/src/openms/source/SYSTEM/PythonInfo.cpp" AutoGen: Parsing "SRC:/src/openms/source/SYSTEM/RWrapper.cpp" AutoGen: Parsing "SRC:/src/openms/source/SYSTEM/StopWatch.cpp" AutoGen: Parsing "SRC:/src/openms/source/SYSTEM/SysInfo.cpp" AutoGen: Parsing "SRC:/src/openms/source/SYSTEM/UpdateCheck.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/BaseModel.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/BiGaussFitter1D.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/BiGaussModel.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/EGHTraceFitter.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/ElutionModelFitter.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/EmgModel.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeFitter1D.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeModel.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmIsotopeWavelet.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmMRM.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPicked.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPickedHelperStructs.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderIdentificationAlgorithm.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderMultiplexAlgorithm.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/GaussFitter1D.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/GaussModel.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/GaussTraceFitter.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeFitter1D.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeModel.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeWavelet.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeWaveletTransform.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/ModelDescription.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexClustering.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexDeltaMasses.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexDeltaMassesGenerator.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredMSExperiment.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredPeak.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFiltering.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringCentroided.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringProfile.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexIsotopicPeakPattern.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexSatelliteCentroided.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexSatelliteProfile.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/PeakWidthEstimator.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/ProductModel.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/SeedListGenerator.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransform.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransformNumIntegration.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/RAW2PEAK/OptimizePeakDeconvolution.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/RAW2PEAK/OptimizePick.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerCWT.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerIterative.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerMaxima.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerSH.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakShape.cpp" AutoGen: Parsing "SRC:/src/openms/source/TRANSFORMATIONS/RAW2PEAK/TwoDOptimization.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/ACY6PAVLTH/moc_ExternalProcess.cpp", because it doesn't exist, from "SRC:/src/openms/include/OpenMS/SYSTEM/ExternalProcess.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/ACY6PAVLTH/moc_ExternalProcess.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SYSTEM/ExternalProcess.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/ACY6PAVLTH/moc_FileWatcher.cpp", because it doesn't exist, from "SRC:/src/openms/include/OpenMS/SYSTEM/FileWatcher.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/ACY6PAVLTH/moc_FileWatcher.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SYSTEM/FileWatcher.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/ACY6PAVLTH/moc_NetworkGetRequest.cpp", because it doesn't exist, from "SRC:/src/openms/include/OpenMS/SYSTEM/NetworkGetRequest.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/ACY6PAVLTH/moc_NetworkGetRequest.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SYSTEM/NetworkGetRequest.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/QMGZ3XHWZJ/moc_MascotRemoteQuery.cpp", because it doesn't exist, from "SRC:/src/openms/include/OpenMS/FORMAT/MascotRemoteQuery.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/QMGZ3XHWZJ/moc_MascotRemoteQuery.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MascotRemoteQuery.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/ACY6PAVLTH/moc_ExternalProcess.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/ACY6PAVLTH/moc_FileWatcher.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/ACY6PAVLTH/moc_NetworkGetRequest.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/QMGZ3XHWZJ/moc_MascotRemoteQuery.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/cmake -E touch /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/timestamp make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 1%] Built target OpenMS_autogen make -f src/openms/CMakeFiles/OpenMS.dir/build.make src/openms/CMakeFiles/OpenMS.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 1%] creating build_config.h file ({event: PRE_BUILD}, {filename: build_config.h}) cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include/OpenMS/build_config_release.h /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include/OpenMS/build_config.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/DependInfo.cmake "--color=" Dependencies file "src/openms/OpenMS_autogen/deps" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target OpenMS make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms/CMakeFiles/OpenMS.dir/build.make src/openms/CMakeFiles/OpenMS.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 1%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/OpenMS_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/OpenMS_autogen/mocs_compilation.cpp.o -MF CMakeFiles/OpenMS.dir/OpenMS_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/OpenMS.dir/OpenMS_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/mocs_compilation.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/QMGZ3XHWZJ/../../../../../src/openms/include/OpenMS/FORMAT/MascotRemoteQuery.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/QMGZ3XHWZJ/moc_MascotRemoteQuery.cpp:10, from /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/mocs_compilation.cpp:2: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/QMGZ3XHWZJ/../../../../../src/openms/include/OpenMS/FORMAT/MascotRemoteQuery.h:134:38: note: by 'OpenMS::MascotRemoteQuery& OpenMS::MascotRemoteQuery::operator=(const OpenMS::MascotRemoteQuery&)' 134 | OPENMS_DLLAPI MascotRemoteQuery& operator=(const MascotRemoteQuery& rhs); | ^~~~~~~~ [ 1%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/INTERFACES_IMPL/MockImplementation.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/INTERFACES_IMPL/MockImplementation.cpp.o -MF CMakeFiles/OpenMS.dir/source/INTERFACES_IMPL/MockImplementation.cpp.o.d -o CMakeFiles/OpenMS.dir/source/INTERFACES_IMPL/MockImplementation.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/INTERFACES_IMPL/MockImplementation.cpp [ 3%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/ClassTest.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/ClassTest.cpp.o -MF CMakeFiles/OpenMS.dir/source/CONCEPT/ClassTest.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CONCEPT/ClassTest.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/ClassTest.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/ConsensusXMLFile.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/ClassTest.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/PrecisionWrapper.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/ClassTest.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/ClassTest.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzDataFile.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/ClassTest.cpp:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzDataHandler.h: In member function 'void OpenMS::Internal::MzDataHandler::setOptions(const OpenMS::PeakFileOptions&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzDataHandler.h:98:20: warning: implicitly-declared 'OpenMS::PeakFileOptions& OpenMS::PeakFileOptions::operator=(const OpenMS::PeakFileOptions&)' is deprecated [-Wdeprecated-copy] 98 | options_ = options; | ^~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/ConsensusXMLFile.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/OPTIONS/PeakFileOptions.h:53:5: note: because 'OpenMS::PeakFileOptions' has user-provided 'OpenMS::PeakFileOptions::PeakFileOptions(const OpenMS::PeakFileOptions&)' 53 | PeakFileOptions(const PeakFileOptions &); | ^~~~~~~~~~~~~~~ [ 3%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/Constants.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/Constants.cpp.o -MF CMakeFiles/OpenMS.dir/source/CONCEPT/Constants.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CONCEPT/Constants.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/Constants.cpp [ 3%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/Exception.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/Exception.cpp.o -MF CMakeFiles/OpenMS.dir/source/CONCEPT/Exception.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CONCEPT/Exception.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/Exception.cpp [ 3%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/FuzzyStringComparator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/FuzzyStringComparator.cpp.o -MF CMakeFiles/OpenMS.dir/source/CONCEPT/FuzzyStringComparator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CONCEPT/FuzzyStringComparator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/FuzzyStringComparator.cpp [ 3%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/GlobalExceptionHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/GlobalExceptionHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/CONCEPT/GlobalExceptionHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CONCEPT/GlobalExceptionHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/GlobalExceptionHandler.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/GlobalExceptionHandler.cpp: In constructor 'OpenMS::Exception::GlobalExceptionHandler::GlobalExceptionHandler()': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/GlobalExceptionHandler.cpp:65:26: warning: 'void (* std::set_unexpected(unexpected_handler))()' is deprecated [-Wdeprecated-declarations] 65 | std::set_unexpected(terminate); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /usr/include/c++/13/ios:41, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/PrecisionWrapper.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/GlobalExceptionHandler.cpp:38: /usr/include/c++/13/exception:89:22: note: declared here 89 | unexpected_handler set_unexpected(unexpected_handler) _GLIBCXX_USE_NOEXCEPT; | ^~~~~~~~~~~~~~ [ 3%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/Init.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/Init.cpp.o -MF CMakeFiles/OpenMS.dir/source/CONCEPT/Init.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CONCEPT/Init.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/Init.cpp [ 3%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/LogConfigHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/LogConfigHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/CONCEPT/LogConfigHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CONCEPT/LogConfigHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/LogConfigHandler.cpp [ 3%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/LogStream.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/LogStream.cpp.o -MF CMakeFiles/OpenMS.dir/source/CONCEPT/LogStream.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CONCEPT/LogStream.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/LogStream.cpp [ 3%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/PrecisionWrapper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/PrecisionWrapper.cpp.o -MF CMakeFiles/OpenMS.dir/source/CONCEPT/PrecisionWrapper.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CONCEPT/PrecisionWrapper.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/PrecisionWrapper.cpp [ 3%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/ProgressLogger.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/ProgressLogger.cpp.o -MF CMakeFiles/OpenMS.dir/source/CONCEPT/ProgressLogger.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CONCEPT/ProgressLogger.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/ProgressLogger.cpp [ 3%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/RAIICleanup.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/RAIICleanup.cpp.o -MF CMakeFiles/OpenMS.dir/source/CONCEPT/RAIICleanup.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CONCEPT/RAIICleanup.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/RAIICleanup.cpp [ 3%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/SingletonRegistry.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/SingletonRegistry.cpp.o -MF CMakeFiles/OpenMS.dir/source/CONCEPT/SingletonRegistry.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CONCEPT/SingletonRegistry.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/SingletonRegistry.cpp [ 3%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/StreamHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/StreamHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/CONCEPT/StreamHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CONCEPT/StreamHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/StreamHandler.cpp [ 5%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/TypeAsString.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/TypeAsString.cpp.o -MF CMakeFiles/OpenMS.dir/source/CONCEPT/TypeAsString.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CONCEPT/TypeAsString.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/TypeAsString.cpp [ 5%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/Types.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/Types.cpp.o -MF CMakeFiles/OpenMS.dir/source/CONCEPT/Types.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CONCEPT/Types.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/Types.cpp [ 5%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/UniqueIdGenerator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/UniqueIdGenerator.cpp.o -MF CMakeFiles/OpenMS.dir/source/CONCEPT/UniqueIdGenerator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CONCEPT/UniqueIdGenerator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/UniqueIdGenerator.cpp [ 5%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/UniqueIdIndexer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/UniqueIdIndexer.cpp.o -MF CMakeFiles/OpenMS.dir/source/CONCEPT/UniqueIdIndexer.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CONCEPT/UniqueIdIndexer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/UniqueIdIndexer.cpp [ 5%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/UniqueIdInterface.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/UniqueIdInterface.cpp.o -MF CMakeFiles/OpenMS.dir/source/CONCEPT/UniqueIdInterface.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CONCEPT/UniqueIdInterface.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/UniqueIdInterface.cpp [ 5%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/VersionInfo.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CONCEPT/VersionInfo.cpp.o -MF CMakeFiles/OpenMS.dir/source/CONCEPT/VersionInfo.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CONCEPT/VersionInfo.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/VersionInfo.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/VersionInfo.cpp:144:23: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 144 | result = String(__DATE__) + ", " + __TIME__; | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/VersionInfo.cpp:144:42: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 144 | result = String(__DATE__) + ", " + __TIME__; | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/VersionInfo.cpp: In static member function 'static OpenMS::VersionInfo::VersionDetails OpenMS::VersionInfo::getVersionStruct()': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/VersionInfo.cpp:169:51: warning: implicitly-declared 'OpenMS::VersionInfo::VersionDetails& OpenMS::VersionInfo::VersionDetails::operator=(const OpenMS::VersionInfo::VersionDetails&)' is deprecated [-Wdeprecated-copy] 169 | result = VersionDetails::create(getVersion()); | ^ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CONCEPT/VersionInfo.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/VersionInfo.h:79:7: note: because 'OpenMS::VersionInfo::VersionDetails' has user-provided 'OpenMS::VersionInfo::VersionDetails::VersionDetails(const OpenMS::VersionInfo::VersionDetails&)' 79 | VersionDetails(const VersionDetails & other): | ^~~~~~~~~~~~~~ [ 5%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/SYSTEM/ExternalProcess.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/SYSTEM/ExternalProcess.cpp.o -MF CMakeFiles/OpenMS.dir/source/SYSTEM/ExternalProcess.cpp.o.d -o CMakeFiles/OpenMS.dir/source/SYSTEM/ExternalProcess.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SYSTEM/ExternalProcess.cpp [ 5%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/SYSTEM/File.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/SYSTEM/File.cpp.o -MF CMakeFiles/OpenMS.dir/source/SYSTEM/File.cpp.o.d -o CMakeFiles/OpenMS.dir/source/SYSTEM/File.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SYSTEM/File.cpp [ 5%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/SYSTEM/FileWatcher.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/SYSTEM/FileWatcher.cpp.o -MF CMakeFiles/OpenMS.dir/source/SYSTEM/FileWatcher.cpp.o.d -o CMakeFiles/OpenMS.dir/source/SYSTEM/FileWatcher.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SYSTEM/FileWatcher.cpp [ 5%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/SYSTEM/JavaInfo.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/SYSTEM/JavaInfo.cpp.o -MF CMakeFiles/OpenMS.dir/source/SYSTEM/JavaInfo.cpp.o.d -o CMakeFiles/OpenMS.dir/source/SYSTEM/JavaInfo.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SYSTEM/JavaInfo.cpp [ 5%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/SYSTEM/NetworkGetRequest.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/SYSTEM/NetworkGetRequest.cpp.o -MF CMakeFiles/OpenMS.dir/source/SYSTEM/NetworkGetRequest.cpp.o.d -o CMakeFiles/OpenMS.dir/source/SYSTEM/NetworkGetRequest.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SYSTEM/NetworkGetRequest.cpp [ 5%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/SYSTEM/PythonInfo.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/SYSTEM/PythonInfo.cpp.o -MF CMakeFiles/OpenMS.dir/source/SYSTEM/PythonInfo.cpp.o.d -o CMakeFiles/OpenMS.dir/source/SYSTEM/PythonInfo.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SYSTEM/PythonInfo.cpp [ 5%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/SYSTEM/RWrapper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/SYSTEM/RWrapper.cpp.o -MF CMakeFiles/OpenMS.dir/source/SYSTEM/RWrapper.cpp.o.d -o CMakeFiles/OpenMS.dir/source/SYSTEM/RWrapper.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SYSTEM/RWrapper.cpp [ 5%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/SYSTEM/StopWatch.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/SYSTEM/StopWatch.cpp.o -MF CMakeFiles/OpenMS.dir/source/SYSTEM/StopWatch.cpp.o.d -o CMakeFiles/OpenMS.dir/source/SYSTEM/StopWatch.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SYSTEM/StopWatch.cpp [ 7%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/SYSTEM/SysInfo.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/SYSTEM/SysInfo.cpp.o -MF CMakeFiles/OpenMS.dir/source/SYSTEM/SysInfo.cpp.o.d -o CMakeFiles/OpenMS.dir/source/SYSTEM/SysInfo.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SYSTEM/SysInfo.cpp [ 7%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/SYSTEM/UpdateCheck.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/SYSTEM/UpdateCheck.cpp.o -MF CMakeFiles/OpenMS.dir/source/SYSTEM/UpdateCheck.cpp.o.d -o CMakeFiles/OpenMS.dir/source/SYSTEM/UpdateCheck.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SYSTEM/UpdateCheck.cpp [ 7%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/AsymmetricStatistics.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/AsymmetricStatistics.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/AsymmetricStatistics.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/AsymmetricStatistics.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/STATISTICS/AsymmetricStatistics.cpp [ 7%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/AveragePosition.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/AveragePosition.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/AveragePosition.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/AveragePosition.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/STATISTICS/AveragePosition.cpp [ 7%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/BasicStatistics.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/BasicStatistics.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/BasicStatistics.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/BasicStatistics.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/STATISTICS/BasicStatistics.cpp [ 7%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/GammaDistributionFitter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/GammaDistributionFitter.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/GammaDistributionFitter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/GammaDistributionFitter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/STATISTICS/GammaDistributionFitter.cpp [ 7%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/GaussFitter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/GaussFitter.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/GaussFitter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/GaussFitter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/STATISTICS/GaussFitter.cpp [ 7%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/GumbelDistributionFitter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/GumbelDistributionFitter.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/GumbelDistributionFitter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/GumbelDistributionFitter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/STATISTICS/GumbelDistributionFitter.cpp [ 7%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/GumbelMaxLikelihoodFitter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/GumbelMaxLikelihoodFitter.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/GumbelMaxLikelihoodFitter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/GumbelMaxLikelihoodFitter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/STATISTICS/GumbelMaxLikelihoodFitter.cpp [ 7%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/Histogram.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/Histogram.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/Histogram.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/Histogram.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/STATISTICS/Histogram.cpp [ 7%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/LinearRegression.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/LinearRegression.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/LinearRegression.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/LinearRegression.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/STATISTICS/LinearRegression.cpp [ 7%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/LinearRegressionWithoutIntercept.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/LinearRegressionWithoutIntercept.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/LinearRegressionWithoutIntercept.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/LinearRegressionWithoutIntercept.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/STATISTICS/LinearRegressionWithoutIntercept.cpp [ 7%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/PosteriorErrorProbabilityModel.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/PosteriorErrorProbabilityModel.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/PosteriorErrorProbabilityModel.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/PosteriorErrorProbabilityModel.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/STATISTICS/PosteriorErrorProbabilityModel.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/STATISTICS/PosteriorErrorProbabilityModel.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/STATISTICS/PosteriorErrorProbabilityModel.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/STATISTICS/PosteriorErrorProbabilityModel.h:271:40: note: by 'OpenMS::Math::PosteriorErrorProbabilityModel& OpenMS::Math::PosteriorErrorProbabilityModel::operator=(const OpenMS::Math::PosteriorErrorProbabilityModel&)' 271 | PosteriorErrorProbabilityModel & operator=(const PosteriorErrorProbabilityModel & rhs); | ^~~~~~~~ [ 9%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/QuadraticRegression.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/QuadraticRegression.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/QuadraticRegression.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/QuadraticRegression.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/STATISTICS/QuadraticRegression.cpp [ 9%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/ROCCurve.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/ROCCurve.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/ROCCurve.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/STATISTICS/ROCCurve.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/STATISTICS/ROCCurve.cpp [ 9%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/BilinearInterpolation.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/BilinearInterpolation.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/MISC/BilinearInterpolation.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/MISC/BilinearInterpolation.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/MISC/BilinearInterpolation.cpp [ 9%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/BSpline2d.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/BSpline2d.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/MISC/BSpline2d.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/MISC/BSpline2d.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/MISC/BSpline2d.cpp [ 9%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/CubicSpline2d.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/CubicSpline2d.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/MISC/CubicSpline2d.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/MISC/CubicSpline2d.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/MISC/CubicSpline2d.cpp [ 9%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/EmgGradientDescent.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/EmgGradientDescent.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/MISC/EmgGradientDescent.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/MISC/EmgGradientDescent.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/MISC/EmgGradientDescent.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/EmgGradientDescent.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/MISC/EmgGradientDescent.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/EmgGradientDescent.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/EmgGradientDescent.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/EmgGradientDescent.h:64:23: note: by 'OpenMS::EmgGradientDescent& OpenMS::EmgGradientDescent::operator=(const OpenMS::EmgGradientDescent&)' 64 | class OPENMS_DLLAPI EmgGradientDescent : | ^~~~~~~~~~~~~~~~~~ [ 9%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/GridSearch.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/GridSearch.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/MISC/GridSearch.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/MISC/GridSearch.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/MISC/GridSearch.cpp [ 9%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/LinearInterpolation.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/LinearInterpolation.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/MISC/LinearInterpolation.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/MISC/LinearInterpolation.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/MISC/LinearInterpolation.cpp [ 9%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/MathFunctions.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/MathFunctions.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/MISC/MathFunctions.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/MISC/MathFunctions.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/MISC/MathFunctions.cpp [ 9%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/NonNegativeLeastSquaresSolver.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/NonNegativeLeastSquaresSolver.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/MISC/NonNegativeLeastSquaresSolver.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/MISC/NonNegativeLeastSquaresSolver.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/MISC/NonNegativeLeastSquaresSolver.cpp [ 9%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/MSNumpress.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/MSNumpress.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/MISC/MSNumpress.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/MISC/MSNumpress.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/MISC/MSNumpress.cpp [ 9%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/RANSAC.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/RANSAC.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/MISC/RANSAC.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/MISC/RANSAC.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/MISC/RANSAC.cpp [ 9%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/RANSACModel.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/RANSACModel.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/MISC/RANSACModel.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/MISC/RANSACModel.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/MISC/RANSACModel.cpp [ 11%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/RANSACModelLinear.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/RANSACModelLinear.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/MISC/RANSACModelLinear.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/MISC/RANSACModelLinear.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/MISC/RANSACModelLinear.cpp [ 11%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/RANSACModelQuadratic.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/RANSACModelQuadratic.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/MISC/RANSACModelQuadratic.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/MISC/RANSACModelQuadratic.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/MISC/RANSACModelQuadratic.cpp [ 11%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/SplineBisection.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/SplineBisection.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/MISC/SplineBisection.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/MISC/SplineBisection.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/MISC/SplineBisection.cpp [ 11%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/NNLS/NNLS.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/MATH/MISC/NNLS/NNLS.cpp.o -MF CMakeFiles/OpenMS.dir/source/MATH/MISC/NNLS/NNLS.cpp.o.d -o CMakeFiles/OpenMS.dir/source/MATH/MISC/NNLS/NNLS.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/MATH/MISC/NNLS/NNLS.cpp [ 11%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/Adduct.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/Adduct.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/Adduct.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/Adduct.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/Adduct.cpp [ 11%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/BinaryTreeNode.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/BinaryTreeNode.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/BinaryTreeNode.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/BinaryTreeNode.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/BinaryTreeNode.cpp [ 11%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/CalibrationData.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/CalibrationData.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/CalibrationData.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/CalibrationData.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/CalibrationData.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/CalibrationData.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/CalibrationData.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/CalibrationData.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 11%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/ChargePair.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/ChargePair.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/ChargePair.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/ChargePair.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/ChargePair.cpp [ 11%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/Compomer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/Compomer.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/Compomer.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/Compomer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/Compomer.cpp [ 11%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/ConstRefVector.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/ConstRefVector.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/ConstRefVector.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/ConstRefVector.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/ConstRefVector.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ConstRefVector.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/ConstRefVector.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/functional:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/ConstRefVector.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/hashtable_policy.h:36, from /usr/include/c++/13/bits/hashtable.h:35, from /usr/include/c++/13/bits/unordered_map.h:33, from /usr/include/c++/13/unordered_map:41, from /usr/include/c++/13/functional:63: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 11%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/ConvexHull2D.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/ConvexHull2D.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/ConvexHull2D.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/ConvexHull2D.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/ConvexHull2D.cpp [ 11%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/CVMappingTerm.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/CVMappingTerm.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/CVMappingTerm.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/CVMappingTerm.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/CVMappingTerm.cpp [ 11%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/CVMappingRule.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/CVMappingRule.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/CVMappingRule.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/CVMappingRule.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/CVMappingRule.cpp [ 13%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/CVReference.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/CVReference.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/CVReference.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/CVReference.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/CVReference.cpp [ 13%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/CVMappings.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/CVMappings.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/CVMappings.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/CVMappings.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/CVMappings.cpp [ 13%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DBoundingBox.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DBoundingBox.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DBoundingBox.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DBoundingBox.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/DBoundingBox.cpp [ 13%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DIntervalBase.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DIntervalBase.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DIntervalBase.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DIntervalBase.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/DIntervalBase.cpp [ 13%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DPosition.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DPosition.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DPosition.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DPosition.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/DPosition.cpp [ 13%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DRange.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DRange.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DRange.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DRange.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/DRange.cpp [ 13%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DataValue.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DataValue.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DataValue.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DataValue.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/DataValue.cpp [ 13%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/Date.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/Date.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/Date.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/Date.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/Date.cpp [ 13%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DateTime.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DateTime.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DateTime.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DateTime.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/DateTime.cpp [ 13%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DefaultParamHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DefaultParamHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DefaultParamHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DefaultParamHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/DefaultParamHandler.cpp [ 13%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DistanceMatrix.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DistanceMatrix.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DistanceMatrix.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/DistanceMatrix.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/DistanceMatrix.cpp [ 13%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/FASTAContainer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/FASTAContainer.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/FASTAContainer.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/FASTAContainer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/FASTAContainer.cpp [ 13%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/GridFeature.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/GridFeature.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/GridFeature.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/GridFeature.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/GridFeature.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/GridFeature.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/set:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/GridFeature.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/GridFeature.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 13%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/ListUtils.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/ListUtils.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/ListUtils.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/ListUtils.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/ListUtils.cpp [ 15%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/ListUtilsIO.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/ListUtilsIO.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/ListUtilsIO.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/ListUtilsIO.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/ListUtilsIO.cpp [ 15%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/LPWrapper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/LPWrapper.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/LPWrapper.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/LPWrapper.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/LPWrapper.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/LPWrapper.cpp: In member function 'void OpenMS::LPWrapper::readProblem(const OpenMS::String&, const OpenMS::String&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/LPWrapper.cpp:472:69: warning: unused parameter 'format' [-Wunused-parameter] 472 | void LPWrapper::readProblem(const String& filename, const String& format) // format=(LP,MPS,GLPK) | ~~~~~~~~~~~~~~^~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/LPWrapper.cpp: In member function 'OpenMS::Int OpenMS::LPWrapper::solve(SolverParam&, OpenMS::Size)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/LPWrapper.cpp:529:37: warning: unused parameter 'solver_param' [-Wunused-parameter] 529 | Int LPWrapper::solve(SolverParam& solver_param, const Size | ~~~~~~~~~~~~~^~~~~~~~~~~~ [ 15%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/Map.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/Map.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/Map.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/Map.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/Map.cpp [ 15%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/MassExplainer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/MassExplainer.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/MassExplainer.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/MassExplainer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/MassExplainer.cpp [ 15%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/MatchedIterator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/MatchedIterator.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/MatchedIterator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/MatchedIterator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/MatchedIterator.cpp [ 15%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/Matrix.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/Matrix.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/Matrix.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/Matrix.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/Matrix.cpp [ 15%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/Param.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/Param.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/Param.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/Param.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/Param.cpp [ 15%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/QTCluster.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/QTCluster.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/QTCluster.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/QTCluster.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/QTCluster.cpp [ 15%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/String.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/String.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/String.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/String.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/String.cpp [ 15%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/StringListUtils.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/StringListUtils.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/StringListUtils.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/StringListUtils.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/StringListUtils.cpp [ 15%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/StringUtils.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/StringUtils.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/StringUtils.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/StringUtils.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/StringUtils.cpp [ 15%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/ToolDescription.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/ToolDescription.cpp.o -MF CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/ToolDescription.cpp.o.d -o CMakeFiles/OpenMS.dir/source/DATASTRUCTURES/ToolDescription.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/ToolDescription.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/ToolDescription.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h: In instantiation of 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = OpenMS::Internal::ToolExternalDetails; _Args = {const OpenMS::Internal::ToolExternalDetails&}; _Tp = OpenMS::Internal::ToolExternalDetails]': /usr/include/c++/13/bits/alloc_traits.h:538:17: required from 'static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = OpenMS::Internal::ToolExternalDetails; _Args = {const OpenMS::Internal::ToolExternalDetails&}; _Tp = OpenMS::Internal::ToolExternalDetails; allocator_type = std::allocator]' /usr/include/c++/13/bits/stl_vector.h:1286:30: required from 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenMS::Internal::ToolExternalDetails; _Alloc = std::allocator; value_type = OpenMS::Internal::ToolExternalDetails]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/ToolDescription.cpp:137:33: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h:106:26: warning: implicitly-declared 'OpenMS::Internal::MappingParam::MappingParam(const OpenMS::Internal::MappingParam&)' is deprecated [-Wdeprecated-copy] 106 | struct OPENMS_DLLAPI ToolExternalDetails | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/ToolDescription.cpp:55:33: note: because 'OpenMS::Internal::MappingParam' has user-provided 'OpenMS::Internal::MappingParam& OpenMS::Internal::MappingParam::operator=(const OpenMS::Internal::MappingParam&)' 55 | OPENMS_DLLAPI MappingParam& MappingParam::operator=(const MappingParam& rhs) | ^~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/13/bits/c++allocator.h:33, from /usr/include/c++/13/bits/allocator.h:46, from /usr/include/c++/13/string:43, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/LogStream.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/ToolDescription.cpp:35: /usr/include/c++/13/bits/new_allocator.h:191:11: note: synthesized method 'OpenMS::Internal::ToolExternalDetails::ToolExternalDetails(const OpenMS::Internal::ToolExternalDetails&)' first required here 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h: In instantiation of 'void std::_Construct(_Tp*, _Args&& ...) [with _Tp = OpenMS::Internal::ToolExternalDetails; _Args = {OpenMS::Internal::ToolExternalDetails}]': /usr/include/c++/13/bits/stl_uninitialized.h:120:21: required from '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = OpenMS::Internal::ToolExternalDetails*]' /usr/include/c++/13/bits/stl_uninitialized.h:137:32: required from 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = OpenMS::Internal::ToolExternalDetails*; bool _TrivialValueTypes = false]' /usr/include/c++/13/bits/stl_uninitialized.h:185:15: required from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = OpenMS::Internal::ToolExternalDetails*]' /usr/include/c++/13/bits/stl_uninitialized.h:373:37: required from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = OpenMS::Internal::ToolExternalDetails*; _Tp = OpenMS::Internal::ToolExternalDetails]' /usr/include/c++/13/bits/stl_uninitialized.h:384:41: required from '_ForwardIterator std::__uninitialized_move_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = OpenMS::Internal::ToolExternalDetails*; _ForwardIterator = OpenMS::Internal::ToolExternalDetails*; _Allocator = allocator]' /usr/include/c++/13/bits/vector.tcc:766:34: required from 'void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = OpenMS::Internal::ToolExternalDetails; _Alloc = std::allocator; iterator = std::vector::iterator]' /usr/include/c++/13/bits/stl_vector.h:1486:19: required from 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; = void; _Tp = OpenMS::Internal::ToolExternalDetails; _Alloc = std::allocator; iterator = std::vector::iterator; const_iterator = std::vector::const_iterator]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/ToolDescription.cpp:157:30: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h:106:26: warning: implicitly-declared 'OpenMS::Internal::MappingParam::MappingParam(const OpenMS::Internal::MappingParam&)' is deprecated [-Wdeprecated-copy] 106 | struct OPENMS_DLLAPI ToolExternalDetails | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/DATASTRUCTURES/ToolDescription.cpp:55:33: note: because 'OpenMS::Internal::MappingParam' has user-provided 'OpenMS::Internal::MappingParam& OpenMS::Internal::MappingParam::operator=(const OpenMS::Internal::MappingParam&)' 55 | OPENMS_DLLAPI MappingParam& MappingParam::operator=(const MappingParam& rhs) | ^~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/alloc_traits.h:33, from /usr/include/c++/13/ext/alloc_traits.h:34, from /usr/include/c++/13/bits/basic_string.h:39, from /usr/include/c++/13/string:54: /usr/include/c++/13/bits/stl_construct.h:119:7: note: synthesized method 'OpenMS::Internal::ToolExternalDetails::ToolExternalDetails(OpenMS::Internal::ToolExternalDetails&&)' first required here 119 | ::new((void*)__p) _Tp(std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/AbsoluteQuantitationStandards.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/AbsoluteQuantitationStandards.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/AbsoluteQuantitationStandards.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/AbsoluteQuantitationStandards.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/AbsoluteQuantitationStandards.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/AbsoluteQuantitationStandards.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/AbsoluteQuantitationStandards.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DBoundingBox.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ConvexHull2D.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 16%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/Acquisition.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/Acquisition.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/Acquisition.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/Acquisition.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/Acquisition.cpp [ 16%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/AcquisitionInfo.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/AcquisitionInfo.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/AcquisitionInfo.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/AcquisitionInfo.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/AcquisitionInfo.cpp [ 16%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/CVTerm.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/CVTerm.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/CVTerm.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/CVTerm.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/CVTerm.cpp [ 16%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/CVTermList.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/CVTermList.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/CVTermList.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/CVTermList.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/CVTermList.cpp [ 16%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/CVTermListInterface.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/CVTermListInterface.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/CVTermListInterface.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/CVTermListInterface.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/CVTermListInterface.cpp [ 16%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/ChromatogramSettings.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/ChromatogramSettings.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/ChromatogramSettings.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/ChromatogramSettings.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/ChromatogramSettings.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/ChromatogramSettings.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 16%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/ContactPerson.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/ContactPerson.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/ContactPerson.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/ContactPerson.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/ContactPerson.cpp [ 16%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/DataArrays.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/DataArrays.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/DataArrays.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/DataArrays.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/DataArrays.cpp [ 16%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/DataProcessing.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/DataProcessing.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/DataProcessing.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/DataProcessing.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/DataProcessing.cpp [ 16%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/Digestion.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/Digestion.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/Digestion.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/Digestion.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/Digestion.cpp [ 16%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/DocumentIDTagger.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/DocumentIDTagger.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/DocumentIDTagger.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/DocumentIDTagger.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/DocumentIDTagger.cpp [ 16%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/DocumentIdentifier.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/DocumentIdentifier.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/DocumentIdentifier.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/DocumentIdentifier.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/DocumentIdentifier.cpp [ 16%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/ExperimentalDesign.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/ExperimentalDesign.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/ExperimentalDesign.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/ExperimentalDesign.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/ExperimentalDesign.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ExperimentalDesign.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/ExperimentalDesign.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ExperimentalDesign.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 18%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/ExperimentalSettings.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/ExperimentalSettings.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/ExperimentalSettings.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/ExperimentalSettings.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/ExperimentalSettings.cpp [ 18%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/Gradient.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/Gradient.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/Gradient.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/Gradient.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/Gradient.cpp [ 18%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/HPLC.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/HPLC.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/HPLC.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/HPLC.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/HPLC.cpp [ 18%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/Identification.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/Identification.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/Identification.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/Identification.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/Identification.cpp [ 18%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/IdentificationHit.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/IdentificationHit.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/IdentificationHit.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/IdentificationHit.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/IdentificationHit.cpp [ 18%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/Instrument.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/Instrument.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/Instrument.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/Instrument.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/Instrument.cpp [ 18%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/InstrumentSettings.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/InstrumentSettings.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/InstrumentSettings.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/InstrumentSettings.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/InstrumentSettings.cpp [ 18%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/IonDetector.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/IonDetector.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/IonDetector.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/IonDetector.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/IonDetector.cpp [ 18%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/IonSource.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/IonSource.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/IonSource.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/IonSource.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/IonSource.cpp [ 18%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/MSQuantifications.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/MSQuantifications.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/MSQuantifications.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/MSQuantifications.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/MSQuantifications.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/MSQuantifications.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/MSQuantifications.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/MSQuantifications.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 18%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/MassAnalyzer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/MassAnalyzer.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/MassAnalyzer.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/MassAnalyzer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/MassAnalyzer.cpp [ 18%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/MetaInfo.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/MetaInfo.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/MetaInfo.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/MetaInfo.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/MetaInfo.cpp [ 18%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/MetaInfoDescription.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/MetaInfoDescription.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/MetaInfoDescription.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/MetaInfoDescription.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/MetaInfoDescription.cpp [ 20%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/MetaInfoInterface.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/MetaInfoInterface.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/MetaInfoInterface.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/MetaInfoInterface.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/MetaInfoInterface.cpp [ 20%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/MetaInfoRegistry.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/MetaInfoRegistry.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/MetaInfoRegistry.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/MetaInfoRegistry.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/MetaInfoRegistry.cpp [ 20%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/Modification.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/Modification.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/Modification.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/Modification.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/Modification.cpp [ 20%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/PeptideEvidence.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/PeptideEvidence.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/PeptideEvidence.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/PeptideEvidence.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/PeptideEvidence.cpp [ 20%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/PeptideHit.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/PeptideHit.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/PeptideHit.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/PeptideHit.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/PeptideHit.cpp [ 20%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/PeptideIdentification.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/PeptideIdentification.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/PeptideIdentification.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/PeptideIdentification.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/PeptideIdentification.cpp [ 20%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/Precursor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/Precursor.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/Precursor.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/Precursor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/Precursor.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/Precursor.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 20%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/Product.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/Product.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/Product.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/Product.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/Product.cpp [ 20%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/ProteinHit.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/ProteinHit.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/ProteinHit.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/ProteinHit.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/ProteinHit.cpp [ 20%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/ProteinIdentification.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/ProteinIdentification.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/ProteinIdentification.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/ProteinIdentification.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/ProteinIdentification.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/ProteinIdentification.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/LogStream.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/ProteinIdentification.cpp:35: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 20%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/Sample.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/Sample.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/Sample.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/Sample.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/Sample.cpp [ 20%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/SampleTreatment.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/SampleTreatment.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/SampleTreatment.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/SampleTreatment.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/SampleTreatment.cpp [ 20%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/ScanWindow.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/ScanWindow.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/ScanWindow.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/ScanWindow.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/ScanWindow.cpp [ 22%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/Software.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/Software.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/Software.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/Software.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/Software.cpp [ 22%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/SourceFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/SourceFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/SourceFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/SourceFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/SourceFile.cpp [ 22%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/SpectrumIdentification.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/SpectrumIdentification.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/SpectrumIdentification.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/SpectrumIdentification.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/SpectrumIdentification.cpp [ 22%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/SpectrumLookup.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/SpectrumLookup.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/SpectrumLookup.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/SpectrumLookup.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/SpectrumLookup.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/SpectrumLookup.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/SpectrumLookup.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/LogStream.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/SpectrumLookup.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 22%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/SpectrumMetaDataLookup.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/SpectrumMetaDataLookup.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/SpectrumMetaDataLookup.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/SpectrumMetaDataLookup.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/SpectrumMetaDataLookup.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/SpectrumLookup.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/SpectrumMetaDataLookup.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/SpectrumMetaDataLookup.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/LogStream.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/SpectrumLookup.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/SpectrumMetaDataLookup.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 22%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/SpectrumSettings.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/SpectrumSettings.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/SpectrumSettings.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/SpectrumSettings.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/SpectrumSettings.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/SpectrumSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/SpectrumSettings.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/SpectrumSettings.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 22%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/Tagging.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/Tagging.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/Tagging.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/Tagging.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/Tagging.cpp [ 22%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/ID/IdentificationData.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/ID/IdentificationData.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/ID/IdentificationData.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/ID/IdentificationData.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/ID/IdentificationData.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ID/IdentificationData.h:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/ID/IdentificationData.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/MetaInfoInterface.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/DataProcessing.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ID/DataProcessingStep.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ID/IdentificationData.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 22%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/METADATA/ID/IdentificationDataConverter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/METADATA/ID/IdentificationDataConverter.cpp.o -MF CMakeFiles/OpenMS.dir/source/METADATA/ID/IdentificationDataConverter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/METADATA/ID/IdentificationDataConverter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/ID/IdentificationDataConverter.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ID/IdentificationData.h:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ID/IdentificationDataConverter.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/METADATA/ID/IdentificationDataConverter.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/MetaInfoInterface.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/DataProcessing.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ID/DataProcessingStep.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ID/IdentificationData.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 22%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/AreaIterator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/AreaIterator.cpp.o -MF CMakeFiles/OpenMS.dir/source/KERNEL/AreaIterator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/KERNEL/AreaIterator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/AreaIterator.cpp [ 22%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/BaseFeature.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/BaseFeature.cpp.o -MF CMakeFiles/OpenMS.dir/source/KERNEL/BaseFeature.cpp.o.d -o CMakeFiles/OpenMS.dir/source/KERNEL/BaseFeature.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/BaseFeature.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/BaseFeature.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/BaseFeature.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 22%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/ConsensusFeature.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/ConsensusFeature.cpp.o -MF CMakeFiles/OpenMS.dir/source/KERNEL/ConsensusFeature.cpp.o.d -o CMakeFiles/OpenMS.dir/source/KERNEL/ConsensusFeature.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/ConsensusFeature.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/ConsensusFeature.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DRange.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/ConsensusFeature.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 22%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/ConsensusMap.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/ConsensusMap.cpp.o -MF CMakeFiles/OpenMS.dir/source/KERNEL/ConsensusMap.cpp.o.d -o CMakeFiles/OpenMS.dir/source/KERNEL/ConsensusMap.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/ConsensusMap.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/ConsensusMap.cpp:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/QCBase.h:236:20: warning: identifier 'requires' is a keyword in C++20 [-Wc++20-compat] 236 | virtual Status requires() const = 0; | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/ConsensusMap.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/functional:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/ConsensusMap.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/hashtable_policy.h:36, from /usr/include/c++/13/bits/hashtable.h:35, from /usr/include/c++/13/bits/unordered_map.h:33, from /usr/include/c++/13/unordered_map:41, from /usr/include/c++/13/functional:63: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 22%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/ConversionHelper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/ConversionHelper.cpp.o -MF CMakeFiles/OpenMS.dir/source/KERNEL/ConversionHelper.cpp.o.d -o CMakeFiles/OpenMS.dir/source/KERNEL/ConversionHelper.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/ConversionHelper.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConversionHelper.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/ConversionHelper.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdGenerator.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdInterface.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 24%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/DPeak.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/DPeak.cpp.o -MF CMakeFiles/OpenMS.dir/source/KERNEL/DPeak.cpp.o.d -o CMakeFiles/OpenMS.dir/source/KERNEL/DPeak.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/DPeak.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/DPeak.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/DPeak.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/DPeak.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 24%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/Feature.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/Feature.cpp.o -MF CMakeFiles/OpenMS.dir/source/KERNEL/Feature.cpp.o.d -o CMakeFiles/OpenMS.dir/source/KERNEL/Feature.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/Feature.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/Feature.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DBoundingBox.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ConvexHull2D.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 24%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/FeatureHandle.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/FeatureHandle.cpp.o -MF CMakeFiles/OpenMS.dir/source/KERNEL/FeatureHandle.cpp.o.d -o CMakeFiles/OpenMS.dir/source/KERNEL/FeatureHandle.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/FeatureHandle.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/FeatureHandle.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdGenerator.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdInterface.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/FeatureHandle.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 24%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/FeatureMap.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/FeatureMap.cpp.o -MF CMakeFiles/OpenMS.dir/source/KERNEL/FeatureMap.cpp.o.d -o CMakeFiles/OpenMS.dir/source/KERNEL/FeatureMap.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/FeatureMap.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/FeatureMap.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DBoundingBox.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ConvexHull2D.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 24%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/MassTrace.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/MassTrace.cpp.o -MF CMakeFiles/OpenMS.dir/source/KERNEL/MassTrace.cpp.o.d -o CMakeFiles/OpenMS.dir/source/KERNEL/MassTrace.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/MassTrace.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MassTrace.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/MassTrace.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MassTrace.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 24%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/MRMFeature.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/MRMFeature.cpp.o -MF CMakeFiles/OpenMS.dir/source/KERNEL/MRMFeature.cpp.o.d -o CMakeFiles/OpenMS.dir/source/KERNEL/MRMFeature.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/MRMFeature.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MRMFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/MRMFeature.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DBoundingBox.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ConvexHull2D.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 24%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/MRMTransitionGroup.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/MRMTransitionGroup.cpp.o -MF CMakeFiles/OpenMS.dir/source/KERNEL/MRMTransitionGroup.cpp.o.d -o CMakeFiles/OpenMS.dir/source/KERNEL/MRMTransitionGroup.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/MRMTransitionGroup.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MRMFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MRMTransitionGroup.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/MRMTransitionGroup.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MRMTransitionGroup.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 24%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/MSExperiment.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/MSExperiment.cpp.o -MF CMakeFiles/OpenMS.dir/source/KERNEL/MSExperiment.cpp.o.d -o CMakeFiles/OpenMS.dir/source/KERNEL/MSExperiment.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/MSExperiment.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/MSExperiment.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResampler.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResamplerAlign.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/MSExperiment.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResampler.h:61:23: note: by 'OpenMS::LinearResampler& OpenMS::LinearResampler::operator=(const OpenMS::LinearResampler&)' 61 | class OPENMS_DLLAPI LinearResampler : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResamplerAlign.h:57:23: note: by 'OpenMS::LinearResamplerAlign::operator=' 57 | class OPENMS_DLLAPI LinearResamplerAlign : | ^~~~~~~~~~~~~~~~~~~~ [ 24%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/MSSpectrum.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/MSSpectrum.cpp.o -MF CMakeFiles/OpenMS.dir/source/KERNEL/MSSpectrum.cpp.o.d -o CMakeFiles/OpenMS.dir/source/KERNEL/MSSpectrum.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/MSSpectrum.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/MSSpectrum.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 24%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/OnDiscMSExperiment.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/OnDiscMSExperiment.cpp.o -MF CMakeFiles/OpenMS.dir/source/KERNEL/OnDiscMSExperiment.cpp.o.d -o CMakeFiles/OpenMS.dir/source/KERNEL/OnDiscMSExperiment.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/OnDiscMSExperiment.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/OnDiscMSExperiment.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/OnDiscMSExperiment.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/INTERFACES/DataStructures.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/OnDiscMSExperiment.h:37: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 24%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/Peak1D.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/Peak1D.cpp.o -MF CMakeFiles/OpenMS.dir/source/KERNEL/Peak1D.cpp.o.d -o CMakeFiles/OpenMS.dir/source/KERNEL/Peak1D.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/Peak1D.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/Peak1D.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 24%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/Peak2D.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/Peak2D.cpp.o -MF CMakeFiles/OpenMS.dir/source/KERNEL/Peak2D.cpp.o.d -o CMakeFiles/OpenMS.dir/source/KERNEL/Peak2D.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/Peak2D.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/Peak2D.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 24%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/PeakIndex.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/PeakIndex.cpp.o -MF CMakeFiles/OpenMS.dir/source/KERNEL/PeakIndex.cpp.o.d -o CMakeFiles/OpenMS.dir/source/KERNEL/PeakIndex.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/PeakIndex.cpp [ 26%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/RangeManager.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/RangeManager.cpp.o -MF CMakeFiles/OpenMS.dir/source/KERNEL/RangeManager.cpp.o.d -o CMakeFiles/OpenMS.dir/source/KERNEL/RangeManager.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/RangeManager.cpp [ 26%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/RichPeak2D.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/RichPeak2D.cpp.o -MF CMakeFiles/OpenMS.dir/source/KERNEL/RichPeak2D.cpp.o.d -o CMakeFiles/OpenMS.dir/source/KERNEL/RichPeak2D.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/RichPeak2D.cpp [ 26%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/StandardTypes.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/StandardTypes.cpp.o -MF CMakeFiles/OpenMS.dir/source/KERNEL/StandardTypes.cpp.o.d -o CMakeFiles/OpenMS.dir/source/KERNEL/StandardTypes.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/StandardTypes.cpp [ 26%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/ChromatogramPeak.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/ChromatogramPeak.cpp.o -MF CMakeFiles/OpenMS.dir/source/KERNEL/ChromatogramPeak.cpp.o.d -o CMakeFiles/OpenMS.dir/source/KERNEL/ChromatogramPeak.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/ChromatogramPeak.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/ChromatogramPeak.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/ChromatogramPeak.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 26%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/MSChromatogram.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/MSChromatogram.cpp.o -MF CMakeFiles/OpenMS.dir/source/KERNEL/MSChromatogram.cpp.o.d -o CMakeFiles/OpenMS.dir/source/KERNEL/MSChromatogram.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/MSChromatogram.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/MSChromatogram.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 26%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/ChromatogramTools.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/ChromatogramTools.cpp.o -MF CMakeFiles/OpenMS.dir/source/KERNEL/ChromatogramTools.cpp.o.d -o CMakeFiles/OpenMS.dir/source/KERNEL/ChromatogramTools.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/ChromatogramTools.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramTools.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/ChromatogramTools.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Map.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramTools.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramTools.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramTools.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:97:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 97 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:133:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 133 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:171:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 171 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:207:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 207 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:242:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 242 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:278:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 278 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:309:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 309 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:343:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 343 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:395:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 395 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:444:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 444 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:489:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 489 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:527:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 527 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:564:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 564 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:617:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 617 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:663:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 663 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 26%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/SpectrumHelper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/KERNEL/SpectrumHelper.cpp.o -MF CMakeFiles/OpenMS.dir/source/KERNEL/SpectrumHelper.cpp.o.d -o CMakeFiles/OpenMS.dir/source/KERNEL/SpectrumHelper.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/KERNEL/SpectrumHelper.cpp [ 26%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/AASequence.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/AASequence.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/AASequence.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/AASequence.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/AASequence.cpp [ 26%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/CrossLinksDB.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/CrossLinksDB.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/CrossLinksDB.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/CrossLinksDB.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/CrossLinksDB.cpp [ 26%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/DecoyGenerator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/DecoyGenerator.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/DecoyGenerator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/DecoyGenerator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/DecoyGenerator.cpp [ 26%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/Element.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/Element.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/Element.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/Element.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/Element.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/Element.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/Element.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/Element.h:39: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 26%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ElementDB.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ElementDB.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/ElementDB.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/ElementDB.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/ElementDB.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/ElementDB.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/ElementDB.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/ElementDB.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 26%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/EmpiricalFormula.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/EmpiricalFormula.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/EmpiricalFormula.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/EmpiricalFormula.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/EmpiricalFormula.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/Element.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/EmpiricalFormula.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/EmpiricalFormula.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/EmpiricalFormula.cpp:36: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 28%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/EnzymaticDigestionLogModel.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/EnzymaticDigestionLogModel.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/EnzymaticDigestionLogModel.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/EnzymaticDigestionLogModel.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/EnzymaticDigestionLogModel.cpp [ 28%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/EnzymaticDigestion.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/EnzymaticDigestion.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/EnzymaticDigestion.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/EnzymaticDigestion.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/EnzymaticDigestion.cpp [ 28%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/DigestionEnzyme.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/DigestionEnzyme.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/DigestionEnzyme.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/DigestionEnzyme.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/DigestionEnzyme.cpp [ 28%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/DigestionEnzymeProtein.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/DigestionEnzymeProtein.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/DigestionEnzymeProtein.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/DigestionEnzymeProtein.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/DigestionEnzymeProtein.cpp [ 28%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/DigestionEnzymeRNA.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/DigestionEnzymeRNA.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/DigestionEnzymeRNA.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/DigestionEnzymeRNA.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/DigestionEnzymeRNA.cpp [ 28%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/DigestionEnzymeDB.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/DigestionEnzymeDB.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/DigestionEnzymeDB.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/DigestionEnzymeDB.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/DigestionEnzymeDB.cpp [ 28%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ModificationDefinition.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ModificationDefinition.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/ModificationDefinition.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/ModificationDefinition.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/ModificationDefinition.cpp [ 28%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ModificationDefinitionsSet.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ModificationDefinitionsSet.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/ModificationDefinitionsSet.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/ModificationDefinitionsSet.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/ModificationDefinitionsSet.cpp [ 28%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ModificationsDB.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ModificationsDB.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/ModificationsDB.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/ModificationsDB.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/ModificationsDB.cpp [ 28%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ModifiedNASequenceGenerator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ModifiedNASequenceGenerator.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/ModifiedNASequenceGenerator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/ModifiedNASequenceGenerator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/ModifiedNASequenceGenerator.cpp [ 28%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/NASequence.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/NASequence.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/NASequence.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/NASequence.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/NASequence.cpp [ 28%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/NucleicAcidSpectrumGenerator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/NucleicAcidSpectrumGenerator.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/NucleicAcidSpectrumGenerator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/NucleicAcidSpectrumGenerator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/NucleicAcidSpectrumGenerator.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/NucleicAcidSpectrumGenerator.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/NucleicAcidSpectrumGenerator.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/NucleicAcidSpectrumGenerator.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/NucleicAcidSpectrumGenerator.h:72:35: note: by 'OpenMS::NucleicAcidSpectrumGenerator& OpenMS::NucleicAcidSpectrumGenerator::operator=(const OpenMS::NucleicAcidSpectrumGenerator&)' 72 | NucleicAcidSpectrumGenerator& operator=(const NucleicAcidSpectrumGenerator& source); | ^~~~~~~~ [ 28%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ProteaseDB.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ProteaseDB.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/ProteaseDB.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/ProteaseDB.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/ProteaseDB.cpp [ 30%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ProteaseDigestion.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ProteaseDigestion.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/ProteaseDigestion.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/ProteaseDigestion.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/ProteaseDigestion.cpp [ 30%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/Residue.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/Residue.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/Residue.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/Residue.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/Residue.cpp [ 30%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ResidueDB.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ResidueDB.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/ResidueDB.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/ResidueDB.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/ResidueDB.cpp [ 30%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ResidueModification.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ResidueModification.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/ResidueModification.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/ResidueModification.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/ResidueModification.cpp [ 30%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/RNaseDB.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/RNaseDB.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/RNaseDB.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/RNaseDB.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/RNaseDB.cpp [ 30%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/RNaseDigestion.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/RNaseDigestion.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/RNaseDigestion.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/RNaseDigestion.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/RNaseDigestion.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ID/IdentificationData.h:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/RNaseDigestion.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/RNaseDigestion.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/Ribonucleotide.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/RibonucleotideDB.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/RNaseDigestion.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 30%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/Ribonucleotide.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/Ribonucleotide.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/Ribonucleotide.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/Ribonucleotide.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/Ribonucleotide.cpp [ 30%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/RibonucleotideDB.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/RibonucleotideDB.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/RibonucleotideDB.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/RibonucleotideDB.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/RibonucleotideDB.cpp [ 30%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/SpectrumAnnotator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/SpectrumAnnotator.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/SpectrumAnnotator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/SpectrumAnnotator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/SpectrumAnnotator.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SpectrumAnnotator.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/SpectrumAnnotator.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SpectrumAnnotator.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SpectrumAnnotator.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h:87:35: note: by 'OpenMS::TheoreticalSpectrumGenerator& OpenMS::TheoreticalSpectrumGenerator::operator=(const OpenMS::TheoreticalSpectrumGenerator&)' 87 | TheoreticalSpectrumGenerator& operator=(const TheoreticalSpectrumGenerator& tsg); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SpectrumAnnotator.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignment.h:84:25: note: by 'OpenMS::SpectrumAlignment& OpenMS::SpectrumAlignment::operator=(const OpenMS::SpectrumAlignment&)' 84 | SpectrumAlignment & operator=(const SpectrumAlignment & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SpectrumAnnotator.h:79:25: note: by 'OpenMS::SpectrumAnnotator& OpenMS::SpectrumAnnotator::operator=(const OpenMS::SpectrumAnnotator&)' 79 | SpectrumAnnotator & operator=(const SpectrumAnnotator & tsg); | ^~~~~~~~ [ 30%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/SimpleTSGXLMS.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/SimpleTSGXLMS.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/SimpleTSGXLMS.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/SimpleTSGXLMS.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/SimpleTSGXLMS.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/OPXLDataStructs.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SimpleTSGXLMS.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/SimpleTSGXLMS.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/stl_tree.h:63, from /usr/include/c++/13/map:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/EmpiricalFormula.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/Residue.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SimpleTSGXLMS.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SimpleTSGXLMS.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SimpleTSGXLMS.h:115:23: note: by 'OpenMS::SimpleTSGXLMS& OpenMS::SimpleTSGXLMS::operator=(const OpenMS::SimpleTSGXLMS&)' 115 | SimpleTSGXLMS & operator=(const SimpleTSGXLMS & tsg); | ^~~~~~~~ [ 30%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/SvmTheoreticalSpectrumGenerator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/SvmTheoreticalSpectrumGenerator.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/SvmTheoreticalSpectrumGenerator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/SvmTheoreticalSpectrumGenerator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/SvmTheoreticalSpectrumGenerator.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGenerator.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/SvmTheoreticalSpectrumGenerator.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/EmpiricalFormula.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/Residue.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h:87:35: note: by 'OpenMS::TheoreticalSpectrumGenerator& OpenMS::TheoreticalSpectrumGenerator::operator=(const OpenMS::TheoreticalSpectrumGenerator&)' 87 | TheoreticalSpectrumGenerator& operator=(const TheoreticalSpectrumGenerator& tsg); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGenerator.h:45: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/stl_tree.h:63: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGenerator.h:205:39: note: by 'OpenMS::SvmTheoreticalSpectrumGenerator& OpenMS::SvmTheoreticalSpectrumGenerator::operator=(const OpenMS::SvmTheoreticalSpectrumGenerator&)' 205 | SvmTheoreticalSpectrumGenerator & operator=(const SvmTheoreticalSpectrumGenerator & tsg); | ^~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/DataProcessing.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/MetaInfoDescription.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/DataArrays.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h:40: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 30%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/SvmTheoreticalSpectrumGeneratorTrainer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/SvmTheoreticalSpectrumGeneratorTrainer.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/SvmTheoreticalSpectrumGeneratorTrainer.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/SvmTheoreticalSpectrumGeneratorTrainer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/SvmTheoreticalSpectrumGeneratorTrainer.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGeneratorTrainer.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/SvmTheoreticalSpectrumGeneratorTrainer.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGeneratorTrainer.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGeneratorTrainer.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGenerator.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGeneratorTrainer.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h:87:35: note: by 'OpenMS::TheoreticalSpectrumGenerator& OpenMS::TheoreticalSpectrumGenerator::operator=(const OpenMS::TheoreticalSpectrumGenerator&)' 87 | TheoreticalSpectrumGenerator& operator=(const TheoreticalSpectrumGenerator& tsg); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGenerator.h:205:39: note: by 'OpenMS::SvmTheoreticalSpectrumGenerator& OpenMS::SvmTheoreticalSpectrumGenerator::operator=(const OpenMS::SvmTheoreticalSpectrumGenerator&)' 205 | SvmTheoreticalSpectrumGenerator & operator=(const SvmTheoreticalSpectrumGenerator & tsg); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGeneratorTrainer.h:105:46: note: by 'OpenMS::SvmTheoreticalSpectrumGeneratorTrainer& OpenMS::SvmTheoreticalSpectrumGeneratorTrainer::operator=(const OpenMS::SvmTheoreticalSpectrumGeneratorTrainer&)' 105 | SvmTheoreticalSpectrumGeneratorTrainer & operator=(const SvmTheoreticalSpectrumGeneratorTrainer & tsg); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/SvmTheoreticalSpectrumGeneratorTrainer.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/Normalizer.h:70:18: note: by 'OpenMS::Normalizer& OpenMS::Normalizer::operator=(const OpenMS::Normalizer&)' 70 | Normalizer & operator=(const Normalizer & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/SvmTheoreticalSpectrumGeneratorTrainer.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/NLargest.h:72:16: note: by 'OpenMS::NLargest& OpenMS::NLargest::operator=(const OpenMS::NLargest&)' 72 | NLargest & operator=(const NLargest & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/SvmTheoreticalSpectrumGeneratorTrainer.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SqrtMower.h:66:17: note: by 'OpenMS::SqrtMower& OpenMS::SqrtMower::operator=(const OpenMS::SqrtMower&)' 66 | SqrtMower & operator=(const SqrtMower & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/SvmTheoreticalSpectrumGeneratorTrainer.cpp: In member function 'void OpenMS::SvmTheoreticalSpectrumGeneratorTrainer::trainModel(const OpenMS::PeakMap&, const std::vector&, OpenMS::String, OpenMS::Int)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/SvmTheoreticalSpectrumGeneratorTrainer.cpp:797:28: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 797 | std::random_shuffle(training_data_by_class[0].begin(), training_data_by_class[0].end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/PrecisionWrapper.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:39: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/SvmTheoreticalSpectrumGeneratorTrainer.cpp:798:28: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 798 | std::random_shuffle(training_data_by_class[1].begin(), training_data_by_class[1].end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 30%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/SvmTheoreticalSpectrumGeneratorSet.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/SvmTheoreticalSpectrumGeneratorSet.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/SvmTheoreticalSpectrumGeneratorSet.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/SvmTheoreticalSpectrumGeneratorSet.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/SvmTheoreticalSpectrumGeneratorSet.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGeneratorSet.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/SvmTheoreticalSpectrumGeneratorSet.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGeneratorSet.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGenerator.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGeneratorSet.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h:87:35: note: by 'OpenMS::TheoreticalSpectrumGenerator& OpenMS::TheoreticalSpectrumGenerator::operator=(const OpenMS::TheoreticalSpectrumGenerator&)' 87 | TheoreticalSpectrumGenerator& operator=(const TheoreticalSpectrumGenerator& tsg); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGenerator.h:205:39: note: by 'OpenMS::SvmTheoreticalSpectrumGenerator& OpenMS::SvmTheoreticalSpectrumGenerator::operator=(const OpenMS::SvmTheoreticalSpectrumGenerator&)' 205 | SvmTheoreticalSpectrumGenerator & operator=(const SvmTheoreticalSpectrumGenerator & tsg); | ^~~~~~~~ [ 30%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/Tagger.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/Tagger.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/Tagger.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/Tagger.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/Tagger.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/Tagger.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ListUtils.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/Tagger.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/Tagger.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 32%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/TheoreticalSpectrumGenerator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/TheoreticalSpectrumGenerator.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/TheoreticalSpectrumGenerator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/TheoreticalSpectrumGenerator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/TheoreticalSpectrumGenerator.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/TheoreticalSpectrumGenerator.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/EmpiricalFormula.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/Residue.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h:87:35: note: by 'OpenMS::TheoreticalSpectrumGenerator& OpenMS::TheoreticalSpectrumGenerator::operator=(const OpenMS::TheoreticalSpectrumGenerator&)' 87 | TheoreticalSpectrumGenerator& operator=(const TheoreticalSpectrumGenerator& tsg); | ^~~~~~~~ [ 32%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/TheoreticalSpectrumGeneratorXLMS.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/TheoreticalSpectrumGeneratorXLMS.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/TheoreticalSpectrumGeneratorXLMS.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/TheoreticalSpectrumGeneratorXLMS.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/TheoreticalSpectrumGeneratorXLMS.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/OPXLDataStructs.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGeneratorXLMS.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/TheoreticalSpectrumGeneratorXLMS.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/stl_tree.h:63, from /usr/include/c++/13/map:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/EmpiricalFormula.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/Residue.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGeneratorXLMS.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGeneratorXLMS.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGeneratorXLMS.h:90:42: note: by 'OpenMS::TheoreticalSpectrumGeneratorXLMS& OpenMS::TheoreticalSpectrumGeneratorXLMS::operator=(const OpenMS::TheoreticalSpectrumGeneratorXLMS&)' 90 | TheoreticalSpectrumGeneratorXLMS & operator=(const TheoreticalSpectrumGeneratorXLMS & tsg); | ^~~~~~~~ [ 32%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/WeightWrapper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/WeightWrapper.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/WeightWrapper.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/WeightWrapper.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/WeightWrapper.cpp [ 32%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ISOTOPEDISTRIBUTION/CoarseIsotopePatternGenerator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ISOTOPEDISTRIBUTION/CoarseIsotopePatternGenerator.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/ISOTOPEDISTRIBUTION/CoarseIsotopePatternGenerator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/ISOTOPEDISTRIBUTION/CoarseIsotopePatternGenerator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/CoarseIsotopePatternGenerator.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/CoarseIsotopePatternGenerator.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/CoarseIsotopePatternGenerator.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 32%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ISOTOPEDISTRIBUTION/FineIsotopePatternGenerator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ISOTOPEDISTRIBUTION/FineIsotopePatternGenerator.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/ISOTOPEDISTRIBUTION/FineIsotopePatternGenerator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/ISOTOPEDISTRIBUTION/FineIsotopePatternGenerator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/FineIsotopePatternGenerator.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/FineIsotopePatternGenerator.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 32%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 32%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsoSpecWrapper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsoSpecWrapper.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsoSpecWrapper.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsoSpecWrapper.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsoSpecWrapper.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/IsoSpecWrapper.h:43, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsoSpecWrapper.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/IsoSpecWrapper.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 32%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopePatternGenerator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopePatternGenerator.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopePatternGenerator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopePatternGenerator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopePatternGenerator.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/Element.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopePatternGenerator.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/Element.h:39: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 32%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSAlphabet.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSAlphabet.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSAlphabet.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSAlphabet.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSAlphabet.cpp [ 32%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSElement.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSElement.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSElement.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSElement.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSElement.cpp [ 32%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSIsotopeDistribution.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSIsotopeDistribution.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSIsotopeDistribution.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSIsotopeDistribution.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSIsotopeDistribution.cpp [ 32%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/IMS/RealMassDecomposer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/IMS/RealMassDecomposer.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/IMS/RealMassDecomposer.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/IMS/RealMassDecomposer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/MASSDECOMPOSITION/IMS/RealMassDecomposer.cpp [ 32%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/IMS/Weights.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/IMS/Weights.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/IMS/Weights.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/IMS/Weights.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/MASSDECOMPOSITION/IMS/Weights.cpp [ 33%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSAlphabetTextParser.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSAlphabetTextParser.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSAlphabetTextParser.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSAlphabetTextParser.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSAlphabetTextParser.cpp [ 33%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/MassDecomposition.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/MassDecomposition.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/MassDecomposition.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/MassDecomposition.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/MASSDECOMPOSITION/MassDecomposition.cpp [ 33%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/MassDecompositionAlgorithm.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/MassDecompositionAlgorithm.cpp.o -MF CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/MassDecompositionAlgorithm.cpp.o.d -o CMakeFiles/OpenMS.dir/source/CHEMISTRY/MASSDECOMPOSITION/MassDecompositionAlgorithm.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/MASSDECOMPOSITION/MassDecompositionAlgorithm.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/MassDecompositionAlgorithm.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/CHEMISTRY/MASSDECOMPOSITION/MassDecompositionAlgorithm.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/MassDecompositionAlgorithm.h:107:34: note: by 'OpenMS::MassDecompositionAlgorithm& OpenMS::MassDecompositionAlgorithm::operator=(const OpenMS::MassDecompositionAlgorithm&)' 107 | MassDecompositionAlgorithm & operator=(const MassDecompositionAlgorithm & rhs); | ^~~~~~~~ [ 33%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/CsiFingerIdMzTabWriter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/CsiFingerIdMzTabWriter.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/CsiFingerIdMzTabWriter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/CsiFingerIdMzTabWriter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/CsiFingerIdMzTabWriter.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTabFile.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/DATAACCESS/CsiFingerIdMzTabWriter.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/CsiFingerIdMzTabWriter.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/CsiFingerIdMzTabWriter.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 33%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataWritingConsumer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataWritingConsumer.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataWritingConsumer.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataWritingConsumer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/MSDataWritingConsumer.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzMLHandler.h:43, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/DATAACCESS/MSDataWritingConsumer.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/MSDataWritingConsumer.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/XMLFile.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzMLFile.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/DATAACCESS/MSDataWritingConsumer.h:39: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 33%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataTransformingConsumer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataTransformingConsumer.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataTransformingConsumer.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataTransformingConsumer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/MSDataTransformingConsumer.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/DATAACCESS/MSDataTransformingConsumer.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/MSDataTransformingConsumer.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/DATAACCESS/MSDataTransformingConsumer.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 33%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataAggregatingConsumer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataAggregatingConsumer.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataAggregatingConsumer.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataAggregatingConsumer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/MSDataAggregatingConsumer.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/DATAACCESS/MSDataAggregatingConsumer.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/MSDataAggregatingConsumer.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/DATAACCESS/MSDataAggregatingConsumer.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResampler.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResamplerAlign.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/MSDataAggregatingConsumer.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResampler.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResampler.h:61:23: note: by 'OpenMS::LinearResampler& OpenMS::LinearResampler::operator=(const OpenMS::LinearResampler&)' 61 | class OPENMS_DLLAPI LinearResampler : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResamplerAlign.h:57:23: note: by 'OpenMS::LinearResamplerAlign::operator=' 57 | class OPENMS_DLLAPI LinearResamplerAlign : | ^~~~~~~~~~~~~~~~~~~~ [ 33%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataCachedConsumer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataCachedConsumer.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataCachedConsumer.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataCachedConsumer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/MSDataCachedConsumer.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/MSDataCachedConsumer.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/CachedMzMLHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/DATAACCESS/MSDataCachedConsumer.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/MSDataCachedConsumer.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/MSDataCachedConsumer.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 33%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataChainingConsumer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataChainingConsumer.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataChainingConsumer.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataChainingConsumer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/MSDataChainingConsumer.cpp [ 33%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataStoringConsumer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataStoringConsumer.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataStoringConsumer.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataStoringConsumer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/MSDataStoringConsumer.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/DATAACCESS/MSDataStoringConsumer.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/MSDataStoringConsumer.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 33%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataSqlConsumer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataSqlConsumer.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataSqlConsumer.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataSqlConsumer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/MSDataSqlConsumer.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/DATAACCESS/MSDataSqlConsumer.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/MSDataSqlConsumer.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 33%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/NoopMSDataConsumer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/NoopMSDataConsumer.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/NoopMSDataConsumer.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/NoopMSDataConsumer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/NoopMSDataConsumer.cpp [ 33%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/SiriusFragmentAnnotation.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/SiriusFragmentAnnotation.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/SiriusFragmentAnnotation.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/SiriusFragmentAnnotation.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/SiriusFragmentAnnotation.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/DATAACCESS/SiriusFragmentAnnotation.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/SiriusFragmentAnnotation.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 35%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/SiriusMzTabWriter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/SiriusMzTabWriter.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/SiriusMzTabWriter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/SiriusMzTabWriter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/SiriusMzTabWriter.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTabFile.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/DATAACCESS/SiriusMzTabWriter.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/SiriusMzTabWriter.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/SiriusMzTabWriter.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 35%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/SwathFileConsumer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/SwathFileConsumer.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/SwathFileConsumer.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/SwathFileConsumer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/SwathFileConsumer.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzMLHandler.h:43, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/DATAACCESS/MSDataWritingConsumer.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/DATAACCESS/SwathFileConsumer.h:45, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DATAACCESS/SwathFileConsumer.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /usr/include/boost/assert/source_location.hpp:15, from /usr/include/boost/exception/exception.hpp:9, from /usr/include/boost/throw_exception.hpp:21, from /usr/include/boost/polymorphic_cast.hpp:79, from /usr/include/boost/cast.hpp:17, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/DATAACCESS/SwathFileConsumer.h:37: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathHelper.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/DATAACCESS/SwathFileConsumer.h:49: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathScoring.h:46, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathHelper.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:157:17: note: by 'OpenMS::DIAScoring& OpenMS::DIAScoring::operator=(const OpenMS::DIAScoring&)' 157 | DIAScoring& operator=(const DIAScoring& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SONARScoring.h:83:19: note: by 'OpenMS::SONARScoring& OpenMS::SONARScoring::operator=(const OpenMS::SONARScoring&)' 83 | SONARScoring& operator=(const SONARScoring& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: note: by 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' 91 | virtual Fitter1D& operator=(const Fitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: warning: 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: note: by 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' 101 | virtual LevMarqFitter1D & operator=(const LevMarqFitter1D & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: warning: 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h:61:26: note: by 'virtual OpenMS::EmgFitter1D& OpenMS::EmgFitter1D::operator=(const OpenMS::EmgFitter1D&)' 61 | virtual EmgFitter1D& operator=(const EmgFitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgModel.h:68:24: note: by 'virtual OpenMS::EmgModel& OpenMS::EmgModel::operator=(const OpenMS::EmgModel&)' 68 | virtual EmgModel & operator=(const EmgModel & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/GaussFilter.h:74:23: note: by 'OpenMS::GaussFilter& OpenMS::GaussFilter::operator=(const OpenMS::GaussFilter&)' 74 | class OPENMS_DLLAPI GaussFilter : | ^~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:93:23: note: by 'OpenMS::MRMFeatureFinderScoring& OpenMS::MRMFeatureFinderScoring::operator=(const OpenMS::MRMFeatureFinderScoring&)' 93 | class OPENMS_DLLAPI MRMFeatureFinderScoring : | ^~~~~~~~~~~~~~~~~~~~~~~ [ 35%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/AcqusHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/AcqusHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/AcqusHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/AcqusHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/AcqusHandler.cpp [ 35%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/CachedMzMLHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/CachedMzMLHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/CachedMzMLHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/CachedMzMLHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/CachedMzMLHandler.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/CachedMzMLHandler.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/CachedMzMLHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/CachedMzMLHandler.cpp:35: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 35%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/FidHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/FidHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/FidHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/FidHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/FidHandler.cpp [ 35%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/IndexedMzMLDecoder.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/IndexedMzMLDecoder.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/IndexedMzMLDecoder.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/IndexedMzMLDecoder.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/IndexedMzMLDecoder.cpp [ 35%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/IndexedMzMLHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/IndexedMzMLHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/IndexedMzMLHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/IndexedMzMLHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/IndexedMzMLHandler.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/IndexedMzMLHandler.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/IndexedMzMLHandler.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/IndexedMzMLHandler.h:39: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/IndexedMzMLHandler.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 35%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MascotXMLHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MascotXMLHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MascotXMLHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MascotXMLHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/MascotXMLHandler.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/SpectrumLookup.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/SpectrumMetaDataLookup.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MascotXMLHandler.h:44, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/MascotXMLHandler.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/EmpiricalFormula.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/AASequence.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MascotXMLHandler.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/SpectrumMetaDataLookup.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/stl_tree.h:63: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 35%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzDataHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzDataHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzDataHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzDataHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/MzDataHandler.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzDataHandler.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/MzDataHandler.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzDataHandler.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzDataHandler.h: In member function 'void OpenMS::Internal::MzDataHandler::setOptions(const OpenMS::PeakFileOptions&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzDataHandler.h:98:20: warning: implicitly-declared 'OpenMS::PeakFileOptions& OpenMS::PeakFileOptions::operator=(const OpenMS::PeakFileOptions&)' is deprecated [-Wdeprecated-copy] 98 | options_ = options; | ^~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzDataHandler.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/OPTIONS/PeakFileOptions.h:53:5: note: because 'OpenMS::PeakFileOptions' has user-provided 'OpenMS::PeakFileOptions::PeakFileOptions(const OpenMS::PeakFileOptions&)' 53 | PeakFileOptions(const PeakFileOptions &); | ^~~~~~~~~~~~~~~ [ 35%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzIdentMLHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzIdentMLHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzIdentMLHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzIdentMLHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/MzIdentMLHandler.cpp [ 35%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzIdentMLDOMHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzIdentMLDOMHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzIdentMLDOMHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzIdentMLDOMHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/MzIdentMLDOMHandler.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/OPXLDataStructs.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/OPXLHelper.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/MzIdentMLDOMHandler.cpp:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ListUtils.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/ControlledVocabulary.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzIdentMLDOMHandler.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/MzIdentMLDOMHandler.cpp:35: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 35%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzQuantMLHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzQuantMLHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzQuantMLHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzQuantMLHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/MzQuantMLHandler.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/MSQuantifications.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzQuantMLHandler.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/MzQuantMLHandler.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/XMLHandler.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzQuantMLHandler.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 35%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzMLHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzMLHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzMLHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzMLHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/MzMLHandler.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzMLHandler.h:43, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/MzMLHandler.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Helpers.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzMLHandler.h:37: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/MzMLHandler.cpp: In member function 'void OpenMS::Internal::MzMLHandler::setOptions(const OpenMS::PeakFileOptions&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/MzMLHandler.cpp:94:18: warning: implicitly-declared 'OpenMS::PeakFileOptions& OpenMS::PeakFileOptions::operator=(const OpenMS::PeakFileOptions&)' is deprecated [-Wdeprecated-copy] 94 | options_ = opt; | ^~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzMLHandlerHelper.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzMLHandler.h:46: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/OPTIONS/PeakFileOptions.h:53:5: note: because 'OpenMS::PeakFileOptions' has user-provided 'OpenMS::PeakFileOptions::PeakFileOptions(const OpenMS::PeakFileOptions&)' 53 | PeakFileOptions(const PeakFileOptions &); | ^~~~~~~~~~~~~~~ [ 37%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzMLHandlerHelper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzMLHandlerHelper.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzMLHandlerHelper.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzMLHandlerHelper.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/MzMLHandlerHelper.cpp [ 37%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzMLSpectrumDecoder.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzMLSpectrumDecoder.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzMLSpectrumDecoder.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzMLSpectrumDecoder.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/MzMLSpectrumDecoder.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzMLSpectrumDecoder.h:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/MzMLSpectrumDecoder.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzMLSpectrumDecoder.h:39: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzMLSpectrumDecoder.h:50: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 37%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzMLSqliteHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzMLSqliteHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzMLSqliteHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzMLSqliteHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/MzMLSqliteHandler.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzMLSqliteHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/MzMLSqliteHandler.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 37%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzMLSqliteSwathHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzMLSqliteSwathHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzMLSqliteSwathHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzMLSqliteSwathHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/MzMLSqliteSwathHandler.cpp [ 37%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzXMLHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzXMLHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzXMLHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzXMLHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/MzXMLHandler.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzXMLHandler.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/MzXMLHandler.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/stl_tree.h:63, from /usr/include/c++/13/map:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/ProgressLogger.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzXMLHandler.h:37: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzXMLHandler.h: In member function 'void OpenMS::Internal::MzXMLHandler::setOptions(const OpenMS::PeakFileOptions&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzXMLHandler.h:103:20: warning: implicitly-declared 'OpenMS::PeakFileOptions& OpenMS::PeakFileOptions::operator=(const OpenMS::PeakFileOptions&)' is deprecated [-Wdeprecated-copy] 103 | options_ = options; | ^~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzXMLHandler.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/OPTIONS/PeakFileOptions.h:53:5: note: because 'OpenMS::PeakFileOptions' has user-provided 'OpenMS::PeakFileOptions::PeakFileOptions(const OpenMS::PeakFileOptions&)' 53 | PeakFileOptions(const PeakFileOptions &); | ^~~~~~~~~~~~~~~ [ 37%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/PTMXMLHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/PTMXMLHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/PTMXMLHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/PTMXMLHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/PTMXMLHandler.cpp [ 37%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/ParamXMLHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/ParamXMLHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/ParamXMLHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/ParamXMLHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/ParamXMLHandler.cpp [ 37%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/ToolDescriptionHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/ToolDescriptionHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/ToolDescriptionHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/ToolDescriptionHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/ToolDescriptionHandler.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/ToolDescriptionHandler.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/ToolDescriptionHandler.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h: In instantiation of 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = OpenMS::Internal::ToolExternalDetails; _Args = {const OpenMS::Internal::ToolExternalDetails&}; _Tp = OpenMS::Internal::ToolExternalDetails]': /usr/include/c++/13/bits/alloc_traits.h:538:17: required from 'static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = OpenMS::Internal::ToolExternalDetails; _Args = {const OpenMS::Internal::ToolExternalDetails&}; _Tp = OpenMS::Internal::ToolExternalDetails; allocator_type = std::allocator]' /usr/include/c++/13/bits/stl_vector.h:1286:30: required from 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenMS::Internal::ToolExternalDetails; _Alloc = std::allocator; value_type = OpenMS::Internal::ToolExternalDetails]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/ToolDescriptionHandler.cpp:194:39: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h:106:26: warning: implicitly-declared 'OpenMS::Internal::MappingParam::MappingParam(const OpenMS::Internal::MappingParam&)' is deprecated [-Wdeprecated-copy] 106 | struct OPENMS_DLLAPI ToolExternalDetails | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h:72:35: note: because 'OpenMS::Internal::MappingParam' has user-provided 'OpenMS::Internal::MappingParam& OpenMS::Internal::MappingParam::operator=(const OpenMS::Internal::MappingParam&)' 72 | OPENMS_DLLAPI MappingParam& operator=(const MappingParam& rhs); | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/13/bits/c++allocator.h:33, from /usr/include/c++/13/bits/allocator.h:46, from /usr/include/c++/13/string:43, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/XMLHandler.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/ToolDescriptionHandler.h:37: /usr/include/c++/13/bits/new_allocator.h:191:11: note: synthesized method 'OpenMS::Internal::ToolExternalDetails::ToolExternalDetails(const OpenMS::Internal::ToolExternalDetails&)' first required here 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h: In instantiation of 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = OpenMS::Internal::ToolDescription; _Args = {const OpenMS::Internal::ToolDescription&}; _Tp = OpenMS::Internal::ToolDescription]': /usr/include/c++/13/bits/alloc_traits.h:538:17: required from 'static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = OpenMS::Internal::ToolDescription; _Args = {const OpenMS::Internal::ToolDescription&}; _Tp = OpenMS::Internal::ToolDescription; allocator_type = std::allocator]' /usr/include/c++/13/bits/stl_vector.h:1286:30: required from 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = OpenMS::Internal::ToolDescription; _Alloc = std::allocator; value_type = OpenMS::Internal::ToolDescription]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/ToolDescriptionHandler.cpp:200:26: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h:122:26: warning: implicitly-declared 'OpenMS::Internal::ToolDescriptionInternal::ToolDescriptionInternal(const OpenMS::Internal::ToolDescriptionInternal&)' is deprecated [-Wdeprecated-copy] 122 | struct OPENMS_DLLAPI ToolDescription : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h:99:32: note: because 'OpenMS::Internal::ToolDescriptionInternal' has user-provided 'OpenMS::Internal::ToolDescriptionInternal& OpenMS::Internal::ToolDescriptionInternal::operator=(const OpenMS::Internal::ToolDescriptionInternal&)' 99 | ToolDescriptionInternal& operator=(const ToolDescriptionInternal& rhs); | ^~~~~~~~ /usr/include/c++/13/bits/new_allocator.h:191:11: note: synthesized method 'OpenMS::Internal::ToolDescription::ToolDescription(const OpenMS::Internal::ToolDescription&)' first required here 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 37%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/TraMLHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/TraMLHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/TraMLHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/TraMLHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/TraMLHandler.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/TraMLHandler.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/TraMLHandler.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/XMLHandler.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/TraMLHandler.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 37%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/UnimodXMLHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/UnimodXMLHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/UnimodXMLHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/UnimodXMLHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/UnimodXMLHandler.cpp [ 37%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/XMLHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/XMLHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/XMLHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/XMLHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/XMLHandler.cpp [ 37%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/XQuestResultXMLHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/XQuestResultXMLHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/XQuestResultXMLHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/XQuestResultXMLHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HANDLERS/XQuestResultXMLHandler.cpp [ 37%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/XMLValidator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/XMLValidator.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/XMLValidator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/XMLValidator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/VALIDATORS/XMLValidator.cpp [ 37%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/MzMLValidator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/MzMLValidator.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/MzMLValidator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/MzMLValidator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/VALIDATORS/MzMLValidator.cpp [ 39%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/MzDataValidator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/MzDataValidator.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/MzDataValidator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/MzDataValidator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/VALIDATORS/MzDataValidator.cpp [ 39%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/SemanticValidator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/SemanticValidator.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/SemanticValidator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/SemanticValidator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/VALIDATORS/SemanticValidator.cpp [ 39%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/MzIdentMLValidator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/MzIdentMLValidator.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/MzIdentMLValidator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/MzIdentMLValidator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/VALIDATORS/MzIdentMLValidator.cpp [ 39%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/MzQuantMLValidator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/MzQuantMLValidator.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/MzQuantMLValidator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/MzQuantMLValidator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/VALIDATORS/MzQuantMLValidator.cpp [ 39%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/TraMLValidator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/TraMLValidator.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/TraMLValidator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/VALIDATORS/TraMLValidator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/VALIDATORS/TraMLValidator.cpp [ 39%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/OPTIONS/FeatureFileOptions.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/OPTIONS/FeatureFileOptions.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/OPTIONS/FeatureFileOptions.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/OPTIONS/FeatureFileOptions.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/OPTIONS/FeatureFileOptions.cpp [ 39%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/OPTIONS/PeakFileOptions.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/OPTIONS/PeakFileOptions.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/OPTIONS/PeakFileOptions.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/OPTIONS/PeakFileOptions.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/OPTIONS/PeakFileOptions.cpp [ 39%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/AbsoluteQuantitationMethodFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/AbsoluteQuantitationMethodFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/AbsoluteQuantitationMethodFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/AbsoluteQuantitationMethodFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/AbsoluteQuantitationMethodFile.cpp [ 39%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/AbsoluteQuantitationStandardsFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/AbsoluteQuantitationStandardsFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/AbsoluteQuantitationStandardsFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/AbsoluteQuantitationStandardsFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/AbsoluteQuantitationStandardsFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/AbsoluteQuantitationStandards.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/AbsoluteQuantitationStandardsFile.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/AbsoluteQuantitationStandardsFile.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/StringListUtils.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/TextFile.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/CsvFile.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/AbsoluteQuantitationStandardsFile.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 39%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/Base64.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/Base64.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/Base64.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/Base64.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/Base64.cpp [ 39%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/Bzip2Ifstream.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/Bzip2Ifstream.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/Bzip2Ifstream.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/Bzip2Ifstream.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/Bzip2Ifstream.cpp [ 39%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/Bzip2InputStream.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/Bzip2InputStream.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/Bzip2InputStream.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/Bzip2InputStream.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/Bzip2InputStream.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/Bzip2InputStream.cpp: In member function 'virtual XMLSize_t OpenMS::Bzip2InputStream::readBytes(XMLByte*, XMLSize_t)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/Bzip2InputStream.cpp:73:71: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 73 | XMLSize_t actual_read = (XMLSize_t) bzip2_->read((char *)fill_it, static_cast(max_to_read)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/CachedMzML.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/CachedMzML.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/CachedMzML.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/CachedMzML.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/CachedMzML.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/CachedMzML.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/CachedMzML.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 41%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/ChromeleonFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/ChromeleonFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/ChromeleonFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/ChromeleonFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/ChromeleonFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/ChromeleonFile.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/ChromeleonFile.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/ChromeleonFile.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 41%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/CompressedInputSource.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/CompressedInputSource.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/CompressedInputSource.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/CompressedInputSource.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/CompressedInputSource.cpp [ 41%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/CVMappingFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/CVMappingFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/CVMappingFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/CVMappingFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/CVMappingFile.cpp [ 41%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/ConsensusXMLFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/ConsensusXMLFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/ConsensusXMLFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/ConsensusXMLFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/ConsensusXMLFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/ConsensusXMLFile.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/ConsensusXMLFile.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/ProgressLogger.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/ConsensusXMLFile.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/stl_tree.h:63: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 41%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/ControlledVocabulary.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/ControlledVocabulary.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/ControlledVocabulary.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/ControlledVocabulary.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/ControlledVocabulary.cpp [ 41%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/CsvFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/CsvFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/CsvFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/CsvFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/CsvFile.cpp [ 41%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DTA2DFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DTA2DFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/DTA2DFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/DTA2DFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DTA2DFile.cpp [ 41%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DTAFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DTAFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/DTAFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/DTAFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DTAFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/DTAFile.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/DTAFile.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/DTAFile.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 41%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/EDTAFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/EDTAFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/EDTAFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/EDTAFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/EDTAFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/EDTAFile.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/EDTAFile.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/FileTypes.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/FileHandler.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/EDTAFile.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/EDTAFile.cpp: In member function 'void OpenMS::EDTAFile::load(const OpenMS::String&, OpenMS::ConsensusMap&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/EDTAFile.cpp:162:43: warning: implicitly-declared 'OpenMS::ConsensusMap::ColumnHeader& OpenMS::ConsensusMap::ColumnHeader::operator=(const OpenMS::ConsensusMap::ColumnHeader&)' is deprecated [-Wdeprecated-copy] 162 | consensus_map.getColumnHeaders()[0] = desc; | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:133:7: note: because 'OpenMS::ConsensusMap::ColumnHeader' has user-provided 'OpenMS::ConsensusMap::ColumnHeader::ColumnHeader(const OpenMS::ConsensusMap::ColumnHeader&)' 133 | ColumnHeader(const ColumnHeader&); | ^~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/EDTAFile.cpp:282:45: warning: implicitly-declared 'OpenMS::ConsensusMap::ColumnHeader& OpenMS::ConsensusMap::ColumnHeader::operator=(const OpenMS::ConsensusMap::ColumnHeader&)' is deprecated [-Wdeprecated-copy] 282 | consensus_map.getColumnHeaders()[i] = fd; | ^~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:133:7: note: because 'OpenMS::ConsensusMap::ColumnHeader' has user-provided 'OpenMS::ConsensusMap::ColumnHeader::ColumnHeader(const OpenMS::ConsensusMap::ColumnHeader&)' 133 | ColumnHeader(const ColumnHeader&); | ^~~~~~~~~~~~ [ 41%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/ExperimentalDesignFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/ExperimentalDesignFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/ExperimentalDesignFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/ExperimentalDesignFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/ExperimentalDesignFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ExperimentalDesign.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/ExperimentalDesignFile.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ExperimentalDesign.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 41%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/FASTAFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/FASTAFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/FASTAFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/FASTAFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/FASTAFile.cpp [ 41%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/FeatureXMLFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/FeatureXMLFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/FeatureXMLFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/FeatureXMLFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/FeatureXMLFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/FeatureXMLFile.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DRange.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/OPTIONS/FeatureFileOptions.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/FeatureXMLFile.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/FeatureXMLFile.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 41%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/FileHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/FileHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/FileHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/FileHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/FileHandler.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/DTAFile.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/FileHandler.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/FileTypes.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/FileHandler.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/FileHandler.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzDataFile.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/FileHandler.cpp:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzDataFile.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzDataHandler.h: In member function 'void OpenMS::Internal::MzDataHandler::setOptions(const OpenMS::PeakFileOptions&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzDataHandler.h:98:20: warning: implicitly-declared 'OpenMS::PeakFileOptions& OpenMS::PeakFileOptions::operator=(const OpenMS::PeakFileOptions&)' is deprecated [-Wdeprecated-copy] 98 | options_ = options; | ^~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/FileHandler.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/OPTIONS/PeakFileOptions.h:53:5: note: because 'OpenMS::PeakFileOptions' has user-provided 'OpenMS::PeakFileOptions::PeakFileOptions(const OpenMS::PeakFileOptions&)' 53 | PeakFileOptions(const PeakFileOptions &); | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MascotGenericFile.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/FileHandler.cpp:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h: At global scope: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MascotGenericFile.h:61:23: note: by 'OpenMS::MascotGenericFile& OpenMS::MascotGenericFile::operator=(const OpenMS::MascotGenericFile&)' 61 | class OPENMS_DLLAPI MascotGenericFile : | ^~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MsInspectFile.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/FileHandler.cpp:47: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramTools.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/FileHandler.cpp:51: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:97:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 97 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:133:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 133 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:171:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 171 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:207:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 207 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:242:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 242 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:278:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 278 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:309:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 309 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:343:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 343 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:395:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 395 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:444:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 444 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:489:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 489 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:527:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 527 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:564:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 564 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:617:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 617 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:663:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 663 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/FileHandler.cpp: In member function 'void OpenMS::FileHandler::setOptions(const OpenMS::PeakFileOptions&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/FileHandler.cpp:504:16: warning: implicitly-declared 'OpenMS::PeakFileOptions& OpenMS::PeakFileOptions::operator=(const OpenMS::PeakFileOptions&)' is deprecated [-Wdeprecated-copy] 504 | options_ = options; | ^~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/OPTIONS/PeakFileOptions.h:53:5: note: because 'OpenMS::PeakFileOptions' has user-provided 'OpenMS::PeakFileOptions::PeakFileOptions(const OpenMS::PeakFileOptions&)' 53 | PeakFileOptions(const PeakFileOptions &); | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/FileHandler.cpp: In member function 'bool OpenMS::FileHandler::loadExperiment(const OpenMS::String&, OpenMS::PeakMap&, OpenMS::FileTypes::Type, OpenMS::ProgressLogger::LogType, bool, bool)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/FileHandler.cpp:599:24: warning: implicitly-declared 'OpenMS::PeakFileOptions& OpenMS::PeakFileOptions::operator=(const OpenMS::PeakFileOptions&)' is deprecated [-Wdeprecated-copy] 599 | f.getOptions() = options_; | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/OPTIONS/PeakFileOptions.h:53:5: note: because 'OpenMS::PeakFileOptions' has user-provided 'OpenMS::PeakFileOptions::PeakFileOptions(const OpenMS::PeakFileOptions&)' 53 | PeakFileOptions(const PeakFileOptions &); | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/FileHandler.cpp:609:24: warning: implicitly-declared 'OpenMS::PeakFileOptions& OpenMS::PeakFileOptions::operator=(const OpenMS::PeakFileOptions&)' is deprecated [-Wdeprecated-copy] 609 | f.getOptions() = options_; | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/OPTIONS/PeakFileOptions.h:53:5: note: because 'OpenMS::PeakFileOptions' has user-provided 'OpenMS::PeakFileOptions::PeakFileOptions(const OpenMS::PeakFileOptions&)' 53 | PeakFileOptions(const PeakFileOptions &); | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/FileHandler.cpp:619:24: warning: implicitly-declared 'OpenMS::PeakFileOptions& OpenMS::PeakFileOptions::operator=(const OpenMS::PeakFileOptions&)' is deprecated [-Wdeprecated-copy] 619 | f.getOptions() = options_; | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/OPTIONS/PeakFileOptions.h:53:5: note: because 'OpenMS::PeakFileOptions' has user-provided 'OpenMS::PeakFileOptions::PeakFileOptions(const OpenMS::PeakFileOptions&)' 53 | PeakFileOptions(const PeakFileOptions &); | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/FileHandler.cpp:628:24: warning: implicitly-declared 'OpenMS::PeakFileOptions& OpenMS::PeakFileOptions::operator=(const OpenMS::PeakFileOptions&)' is deprecated [-Wdeprecated-copy] 628 | f.getOptions() = options_; | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/OPTIONS/PeakFileOptions.h:53:5: note: because 'OpenMS::PeakFileOptions' has user-provided 'OpenMS::PeakFileOptions::PeakFileOptions(const OpenMS::PeakFileOptions&)' 53 | PeakFileOptions(const PeakFileOptions &); | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/FileHandler.cpp: In member function 'void OpenMS::FileHandler::storeExperiment(const OpenMS::String&, const OpenMS::PeakMap&, OpenMS::ProgressLogger::LogType)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/FileHandler.cpp:698:24: warning: implicitly-declared 'OpenMS::PeakFileOptions& OpenMS::PeakFileOptions::operator=(const OpenMS::PeakFileOptions&)' is deprecated [-Wdeprecated-copy] 698 | f.getOptions() = options_; | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/OPTIONS/PeakFileOptions.h:53:5: note: because 'OpenMS::PeakFileOptions' has user-provided 'OpenMS::PeakFileOptions::PeakFileOptions(const OpenMS::PeakFileOptions&)' 53 | PeakFileOptions(const PeakFileOptions &); | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/FileHandler.cpp:707:24: warning: implicitly-declared 'OpenMS::PeakFileOptions& OpenMS::PeakFileOptions::operator=(const OpenMS::PeakFileOptions&)' is deprecated [-Wdeprecated-copy] 707 | f.getOptions() = options_; | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/OPTIONS/PeakFileOptions.h:53:5: note: because 'OpenMS::PeakFileOptions' has user-provided 'OpenMS::PeakFileOptions::PeakFileOptions(const OpenMS::PeakFileOptions&)' 53 | PeakFileOptions(const PeakFileOptions &); | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/FileHandler.cpp:725:24: warning: implicitly-declared 'OpenMS::PeakFileOptions& OpenMS::PeakFileOptions::operator=(const OpenMS::PeakFileOptions&)' is deprecated [-Wdeprecated-copy] 725 | f.getOptions() = options_; | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/OPTIONS/PeakFileOptions.h:53:5: note: because 'OpenMS::PeakFileOptions' has user-provided 'OpenMS::PeakFileOptions::PeakFileOptions(const OpenMS::PeakFileOptions&)' 53 | PeakFileOptions(const PeakFileOptions &); | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/FileHandler.cpp:743:24: warning: implicitly-declared 'OpenMS::PeakFileOptions& OpenMS::PeakFileOptions::operator=(const OpenMS::PeakFileOptions&)' is deprecated [-Wdeprecated-copy] 743 | f.getOptions() = options_; | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/OPTIONS/PeakFileOptions.h:53:5: note: because 'OpenMS::PeakFileOptions' has user-provided 'OpenMS::PeakFileOptions::PeakFileOptions(const OpenMS::PeakFileOptions&)' 53 | PeakFileOptions(const PeakFileOptions &); | ^~~~~~~~~~~~~~~ [ 43%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/FileTypes.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/FileTypes.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/FileTypes.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/FileTypes.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/FileTypes.cpp [ 43%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/GzipIfstream.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/GzipIfstream.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/GzipIfstream.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/GzipIfstream.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/GzipIfstream.cpp [ 43%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/GzipInputStream.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/GzipInputStream.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/GzipInputStream.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/GzipInputStream.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/GzipInputStream.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/GzipInputStream.cpp: In member function 'virtual XMLSize_t OpenMS::GzipInputStream::readBytes(XMLByte*, XMLSize_t)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/GzipInputStream.cpp:74:70: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 74 | XMLSize_t actual_read = (XMLSize_t) gzip_->read((char *)fill_it, static_cast(max_to_read)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 43%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HDF5Connector.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HDF5Connector.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/HDF5Connector.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/HDF5Connector.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/HDF5Connector.cpp [ 43%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/IBSpectraFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/IBSpectraFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/IBSpectraFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/IBSpectraFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/IBSpectraFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/IBSpectraFile.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/StringListUtils.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/IBSpectraFile.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/IBSpectraFile.cpp:36: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/IBSpectraFile.cpp:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:54:23: note: by 'OpenMS::IsobaricQuantitationMethod& OpenMS::IsobaricQuantitationMethod::operator=(const OpenMS::IsobaricQuantitationMethod&)' 54 | class OPENMS_DLLAPI IsobaricQuantitationMethod : | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/IBSpectraFile.cpp:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/ItraqFourPlexQuantitationMethod.h:60:38: note: by 'OpenMS::ItraqFourPlexQuantitationMethod& OpenMS::ItraqFourPlexQuantitationMethod::operator=(const OpenMS::ItraqFourPlexQuantitationMethod&)' 60 | ItraqFourPlexQuantitationMethod& operator=(const ItraqFourPlexQuantitationMethod& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/IBSpectraFile.cpp:45: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/ItraqEightPlexQuantitationMethod.h:62:40: note: by 'OpenMS::ItraqEightPlexQuantitationMethod& OpenMS::ItraqEightPlexQuantitationMethod::operator=(const OpenMS::ItraqEightPlexQuantitationMethod&)' 62 | ItraqEightPlexQuantitationMethod & operator=(const ItraqEightPlexQuantitationMethod& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/IBSpectraFile.cpp:46: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/TMTSixPlexQuantitationMethod.h:62:36: note: by 'OpenMS::TMTSixPlexQuantitationMethod& OpenMS::TMTSixPlexQuantitationMethod::operator=(const OpenMS::TMTSixPlexQuantitationMethod&)' 62 | TMTSixPlexQuantitationMethod & operator=(const TMTSixPlexQuantitationMethod& rhs); | ^~~~~~~~ [ 43%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/IdXMLFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/IdXMLFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/IdXMLFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/IdXMLFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/IdXMLFile.cpp [ 43%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/IndexedMzMLFileLoader.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/IndexedMzMLFileLoader.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/IndexedMzMLFileLoader.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/IndexedMzMLFileLoader.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/IndexedMzMLFileLoader.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/OnDiscMSExperiment.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/IndexedMzMLFileLoader.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/IndexedMzMLFileLoader.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/XMLFile.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzMLFile.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/IndexedMzMLFileLoader.h:37: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/IndexedMzMLFileLoader.cpp: In member function 'void OpenMS::IndexedMzMLFileLoader::setOptions(const OpenMS::PeakFileOptions&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/IndexedMzMLFileLoader.cpp:60:18: warning: implicitly-declared 'OpenMS::PeakFileOptions& OpenMS::PeakFileOptions::operator=(const OpenMS::PeakFileOptions&)' is deprecated [-Wdeprecated-copy] 60 | options_ = options; | ^~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzMLFile.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/OPTIONS/PeakFileOptions.h:53:5: note: because 'OpenMS::PeakFileOptions' has user-provided 'OpenMS::PeakFileOptions::PeakFileOptions(const OpenMS::PeakFileOptions&)' 53 | PeakFileOptions(const PeakFileOptions &); | ^~~~~~~~~~~~~~~ [ 43%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/InspectInfile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/InspectInfile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/InspectInfile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/InspectInfile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/InspectInfile.cpp [ 43%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/InspectOutfile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/InspectOutfile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/InspectOutfile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/InspectOutfile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/InspectOutfile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/InspectOutfile.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/InspectOutfile.cpp:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/LogStream.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/InspectOutfile.cpp:41: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 43%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/KroenikFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/KroenikFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/KroenikFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/KroenikFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/KroenikFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/KroenikFile.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/KroenikFile.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/KroenikFile.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 43%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/LibSVMEncoder.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/LibSVMEncoder.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/LibSVMEncoder.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/LibSVMEncoder.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/LibSVMEncoder.cpp [ 43%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MRMFeaturePickerFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MRMFeaturePickerFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/MRMFeaturePickerFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/MRMFeaturePickerFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MRMFeaturePickerFile.cpp [ 43%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MRMFeatureQCFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MRMFeatureQCFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/MRMFeatureQCFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/MRMFeatureQCFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MRMFeatureQCFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MRMFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureQC.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MRMFeatureQCFile.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MRMFeatureQCFile.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/StringListUtils.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/TextFile.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/CsvFile.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MRMFeatureQCFile.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureQC.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 45%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MS2File.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MS2File.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/MS2File.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/MS2File.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MS2File.cpp [ 45%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MSNumpressCoder.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MSNumpressCoder.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/MSNumpressCoder.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/MSNumpressCoder.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MSNumpressCoder.cpp [ 45%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MSPFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MSPFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/MSPFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/MSPFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MSPFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MSPFile.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MSPFile.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MSPFile.h:72:15: note: by 'OpenMS::MSPFile& OpenMS::MSPFile::operator=(const OpenMS::MSPFile&)' 72 | MSPFile & operator=(const MSPFile & rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MSPFile.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 45%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MSPGenericFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MSPGenericFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/MSPGenericFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/MSPGenericFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MSPGenericFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MSPGenericFile.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MSPGenericFile.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MSPGenericFile.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MSPGenericFile.h:67:23: note: by 'OpenMS::MSPGenericFile& OpenMS::MSPGenericFile::operator=(const OpenMS::MSPGenericFile&)' 67 | class OPENMS_DLLAPI MSPGenericFile : | ^~~~~~~~~~~~~~ [ 45%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MSstatsFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MSstatsFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/MSstatsFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/MSstatsFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MSstatsFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ExperimentalDesign.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MSstatsFile.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MSstatsFile.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ExperimentalDesign.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 45%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MascotInfile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MascotInfile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/MascotInfile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/MascotInfile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MascotInfile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MascotInfile.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MascotInfile.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 45%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MascotGenericFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MascotGenericFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/MascotGenericFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/MascotGenericFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MascotGenericFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MascotGenericFile.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MascotGenericFile.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MascotGenericFile.h:61:23: note: by 'OpenMS::MascotGenericFile& OpenMS::MascotGenericFile::operator=(const OpenMS::MascotGenericFile&)' 61 | class OPENMS_DLLAPI MascotGenericFile : | ^~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MascotGenericFile.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/FileTypes.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/FileHandler.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MascotGenericFile.cpp:35: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 45%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MascotRemoteQuery.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MascotRemoteQuery.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/MascotRemoteQuery.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/MascotRemoteQuery.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MascotRemoteQuery.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MascotRemoteQuery.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MascotRemoteQuery.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MascotRemoteQuery.h:134:38: note: by 'OpenMS::MascotRemoteQuery& OpenMS::MascotRemoteQuery::operator=(const OpenMS::MascotRemoteQuery&)' 134 | OPENMS_DLLAPI MascotRemoteQuery& operator=(const MascotRemoteQuery& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MascotRemoteQuery.cpp: In member function 'void OpenMS::MascotRemoteQuery::login()': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MascotRemoteQuery.cpp:182:22: warning: 'QByteArray& QByteArray::append(const QString&)' is deprecated: Use QString's toUtf8(), toLatin1() or toLocal8Bit() [-Wdeprecated-declarations] 182 | loginbytes.append(boundary_string); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qobject.h:47, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QObject:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MascotRemoteQuery.h:38: /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:1508:20: note: declared here 1508 | inline QByteArray &QByteArray::append(const QString &s) | ^~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MascotRemoteQuery.cpp:188:22: warning: 'QByteArray& QByteArray::append(const QString&)' is deprecated: Use QString's toUtf8(), toLatin1() or toLocal8Bit() [-Wdeprecated-declarations] 188 | loginbytes.append(boundary_string); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:1508:20: note: declared here 1508 | inline QByteArray &QByteArray::append(const QString &s) | ^~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MascotRemoteQuery.cpp:194:22: warning: 'QByteArray& QByteArray::append(const QString&)' is deprecated: Use QString's toUtf8(), toLatin1() or toLocal8Bit() [-Wdeprecated-declarations] 194 | loginbytes.append(boundary_string); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:1508:20: note: declared here 1508 | inline QByteArray &QByteArray::append(const QString &s) | ^~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MascotRemoteQuery.cpp:199:22: warning: 'QByteArray& QByteArray::append(const QString&)' is deprecated: Use QString's toUtf8(), toLatin1() or toLocal8Bit() [-Wdeprecated-declarations] 199 | loginbytes.append(boundary_string); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:1508:20: note: declared here 1508 | inline QByteArray &QByteArray::append(const QString &s) | ^~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MascotRemoteQuery.cpp:204:22: warning: 'QByteArray& QByteArray::append(const QString&)' is deprecated: Use QString's toUtf8(), toLatin1() or toLocal8Bit() [-Wdeprecated-declarations] 204 | loginbytes.append(boundary_string); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:1508:20: note: declared here 1508 | inline QByteArray &QByteArray::append(const QString &s) | ^~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MascotRemoteQuery.cpp:209:22: warning: 'QByteArray& QByteArray::append(const QString&)' is deprecated: Use QString's toUtf8(), toLatin1() or toLocal8Bit() [-Wdeprecated-declarations] 209 | loginbytes.append(boundary_string); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:1508:20: note: declared here 1508 | inline QByteArray &QByteArray::append(const QString &s) | ^~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MascotRemoteQuery.cpp:214:22: warning: 'QByteArray& QByteArray::append(const QString&)' is deprecated: Use QString's toUtf8(), toLatin1() or toLocal8Bit() [-Wdeprecated-declarations] 214 | loginbytes.append(boundary_string); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:1508:20: note: declared here 1508 | inline QByteArray &QByteArray::append(const QString &s) | ^~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MascotRemoteQuery.cpp:219:22: warning: 'QByteArray& QByteArray::append(const QString&)' is deprecated: Use QString's toUtf8(), toLatin1() or toLocal8Bit() [-Wdeprecated-declarations] 219 | loginbytes.append(boundary_string); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:1508:20: note: declared here 1508 | inline QByteArray &QByteArray::append(const QString &s) | ^~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MascotRemoteQuery.cpp:224:22: warning: 'QByteArray& QByteArray::append(const QString&)' is deprecated: Use QString's toUtf8(), toLatin1() or toLocal8Bit() [-Wdeprecated-declarations] 224 | loginbytes.append(boundary_string); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:1508:20: note: declared here 1508 | inline QByteArray &QByteArray::append(const QString &s) | ^~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MascotRemoteQuery.cpp:229:22: warning: 'QByteArray& QByteArray::append(const QString&)' is deprecated: Use QString's toUtf8(), toLatin1() or toLocal8Bit() [-Wdeprecated-declarations] 229 | loginbytes.append("--" + boundary + "--\r\n"); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:1508:20: note: declared here 1508 | inline QByteArray &QByteArray::append(const QString &s) | ^~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MascotRemoteQuery.cpp: In member function 'void OpenMS::MascotRemoteQuery::execQuery()': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MascotRemoteQuery.cpp:355:22: warning: 'QByteArray& QByteArray::append(const QString&)' is deprecated: Use QString's toUtf8(), toLatin1() or toLocal8Bit() [-Wdeprecated-declarations] 355 | querybytes.append("--" + boundary + "--\n"); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:1508:20: note: declared here 1508 | inline QByteArray &QByteArray::append(const QString &s) | ^~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MascotRemoteQuery.cpp:360:22: warning: 'QByteArray& QByteArray::append(const QString&)' is deprecated: Use QString's toUtf8(), toLatin1() or toLocal8Bit() [-Wdeprecated-declarations] 360 | querybytes.append("--" + boundary + "--\n"); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:1508:20: note: declared here 1508 | inline QByteArray &QByteArray::append(const QString &s) | ^~~~~~~~~~ [ 45%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MascotXMLFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MascotXMLFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/MascotXMLFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/MascotXMLFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MascotXMLFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/SpectrumLookup.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/SpectrumMetaDataLookup.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MascotXMLHandler.h:44, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MascotXMLFile.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MascotXMLFile.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/EmpiricalFormula.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/AASequence.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MascotXMLFile.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/SpectrumMetaDataLookup.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/stl_tree.h:63: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 45%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MsInspectFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MsInspectFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/MsInspectFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/MsInspectFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MsInspectFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MsInspectFile.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MsInspectFile.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MsInspectFile.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 45%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MzDataFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MzDataFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/MzDataFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/MzDataFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MzDataFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzDataFile.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MzDataFile.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/StringListUtils.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SYSTEM/File.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MzDataFile.cpp:35: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzDataFile.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzDataHandler.h: In member function 'void OpenMS::Internal::MzDataHandler::setOptions(const OpenMS::PeakFileOptions&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzDataHandler.h:98:20: warning: implicitly-declared 'OpenMS::PeakFileOptions& OpenMS::PeakFileOptions::operator=(const OpenMS::PeakFileOptions&)' is deprecated [-Wdeprecated-copy] 98 | options_ = options; | ^~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzDataFile.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/OPTIONS/PeakFileOptions.h:53:5: note: because 'OpenMS::PeakFileOptions' has user-provided 'OpenMS::PeakFileOptions::PeakFileOptions(const OpenMS::PeakFileOptions&)' 53 | PeakFileOptions(const PeakFileOptions &); | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MzDataFile.cpp: In member function 'void OpenMS::MzDataFile::setOptions(const OpenMS::PeakFileOptions&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MzDataFile.cpp:65:18: warning: implicitly-declared 'OpenMS::PeakFileOptions& OpenMS::PeakFileOptions::operator=(const OpenMS::PeakFileOptions&)' is deprecated [-Wdeprecated-copy] 65 | options_ = options; | ^~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/OPTIONS/PeakFileOptions.h:53:5: note: because 'OpenMS::PeakFileOptions' has user-provided 'OpenMS::PeakFileOptions::PeakFileOptions(const OpenMS::PeakFileOptions&)' 53 | PeakFileOptions(const PeakFileOptions &); | ^~~~~~~~~~~~~~~ [ 45%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MzIdentMLFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MzIdentMLFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/MzIdentMLFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/MzIdentMLFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MzIdentMLFile.cpp [ 45%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MzMLFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MzMLFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/MzMLFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/MzMLFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MzMLFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzMLHandler.h:43, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MzMLFile.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/XMLFile.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzMLFile.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MzMLFile.cpp:35: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MzMLFile.cpp: In member function 'void OpenMS::MzMLFile::setOptions(const OpenMS::PeakFileOptions&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MzMLFile.cpp:72:16: warning: implicitly-declared 'OpenMS::PeakFileOptions& OpenMS::PeakFileOptions::operator=(const OpenMS::PeakFileOptions&)' is deprecated [-Wdeprecated-copy] 72 | options_ = options; | ^~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzMLFile.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/OPTIONS/PeakFileOptions.h:53:5: note: because 'OpenMS::PeakFileOptions' has user-provided 'OpenMS::PeakFileOptions::PeakFileOptions(const OpenMS::PeakFileOptions&)' 53 | PeakFileOptions(const PeakFileOptions &); | ^~~~~~~~~~~~~~~ [ 47%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MzQuantMLFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MzQuantMLFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/MzQuantMLFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/MzQuantMLFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MzQuantMLFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/MSQuantifications.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzQuantMLFile.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MzQuantMLFile.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/FileTypes.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/FileHandler.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MzQuantMLFile.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 47%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MzTab.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MzTab.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/MzTab.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/MzTab.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MzTab.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MzTab.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/SVOutStream.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MzTab.cpp:46: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::FilterPeptideEvidences(EvidenceFilter&, std::vector&) [with EvidenceFilter = DigestionFilter]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:485:68: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:726:35: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::DigestionFilter]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 726 | std::not1(filter)); | ~~~~~~~~~^~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasGoodScore]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:830:26: required from 'static void OpenMS::IDFilter::filterHitsByScore(std::vector&, double) [with IdentificationType = OpenMS::ProteinIdentification]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1116:24: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasGoodScore]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasGoodScore]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:830:26: required from 'static void OpenMS::IDFilter::filterHitsByScore(std::vector&, double) [with IdentificationType = OpenMS::PeptideIdentification]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1125:26: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasGoodScore]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasMetaValue]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:571:26: required from 'static void OpenMS::IDFilter::keepMatchingItemsUnroll(IDContainer&, const Predicate&) [with IDContainer = std::vector; Predicate = HasMetaValue]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1184:30: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMetaValue]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasMatchingAccession]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:965:26: required from 'static void OpenMS::IDFilter::keepHitsMatchingProteins(std::vector&, const std::set&) [with IdentificationType = OpenMS::ProteinIdentification]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1332:31: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMatchingAccession]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasMatchingAccession]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:965:26: required from 'static void OpenMS::IDFilter::keepHitsMatchingProteins(std::vector&, const std::set&) [with IdentificationType = OpenMS::PeptideIdentification]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1342:35: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMatchingAccession]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ [ 47%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MzTabFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MzTabFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/MzTabFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/MzTabFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MzTabFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTabFile.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MzTabFile.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/FileTypes.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/FileHandler.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MzTabFile.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 47%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MzXMLFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MzXMLFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/MzXMLFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/MzXMLFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MzXMLFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzXMLHandler.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MzXMLFile.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/XMLFile.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzXMLFile.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MzXMLFile.cpp:35: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzXMLHandler.h: In member function 'void OpenMS::Internal::MzXMLHandler::setOptions(const OpenMS::PeakFileOptions&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/MzXMLHandler.h:103:20: warning: implicitly-declared 'OpenMS::PeakFileOptions& OpenMS::PeakFileOptions::operator=(const OpenMS::PeakFileOptions&)' is deprecated [-Wdeprecated-copy] 103 | options_ = options; | ^~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzXMLFile.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/OPTIONS/PeakFileOptions.h:53:5: note: because 'OpenMS::PeakFileOptions' has user-provided 'OpenMS::PeakFileOptions::PeakFileOptions(const OpenMS::PeakFileOptions&)' 53 | PeakFileOptions(const PeakFileOptions &); | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MzXMLFile.cpp: In member function 'void OpenMS::MzXMLFile::setOptions(const OpenMS::PeakFileOptions&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/MzXMLFile.cpp:64:18: warning: implicitly-declared 'OpenMS::PeakFileOptions& OpenMS::PeakFileOptions::operator=(const OpenMS::PeakFileOptions&)' is deprecated [-Wdeprecated-copy] 64 | options_ = options; | ^~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/OPTIONS/PeakFileOptions.h:53:5: note: because 'OpenMS::PeakFileOptions' has user-provided 'OpenMS::PeakFileOptions::PeakFileOptions(const OpenMS::PeakFileOptions&)' 53 | PeakFileOptions(const PeakFileOptions &); | ^~~~~~~~~~~~~~~ [ 47%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/OMSSACSVFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/OMSSACSVFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/OMSSACSVFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/OMSSACSVFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/OMSSACSVFile.cpp [ 47%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/OMSSAXMLFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/OMSSAXMLFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/OMSSAXMLFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/OMSSAXMLFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/OMSSAXMLFile.cpp [ 47%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/OSWFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/OSWFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/OSWFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/OSWFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/OSWFile.cpp [ 47%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/ParamXMLFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/ParamXMLFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/ParamXMLFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/ParamXMLFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/ParamXMLFile.cpp [ 47%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/PTMXMLFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/PTMXMLFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/PTMXMLFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/PTMXMLFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/PTMXMLFile.cpp [ 47%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/PeakTypeEstimator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/PeakTypeEstimator.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/PeakTypeEstimator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/PeakTypeEstimator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/PeakTypeEstimator.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/SpectrumSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/PeakTypeEstimator.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/PeakTypeEstimator.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/SpectrumSettings.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 47%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/PepNovoInfile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/PepNovoInfile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/PepNovoInfile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/PepNovoInfile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/PepNovoInfile.cpp [ 47%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/PepNovoOutfile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/PepNovoOutfile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/PepNovoOutfile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/PepNovoOutfile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/PepNovoOutfile.cpp [ 47%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/PepXMLFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/PepXMLFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/PepXMLFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/PepXMLFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/PepXMLFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/Element.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/PepXMLFile.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/PepXMLFile.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/EmpiricalFormula.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/AASequence.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/PepXMLFile.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/SpectrumLookup.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/SpectrumMetaDataLookup.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/PepXMLFile.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/SpectrumMetaDataLookup.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/stl_tree.h:63: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 47%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/PepXMLFileMascot.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/PepXMLFileMascot.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/PepXMLFileMascot.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/PepXMLFileMascot.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/PepXMLFileMascot.cpp [ 49%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/PercolatorOutfile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/PercolatorOutfile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/PercolatorOutfile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/PercolatorOutfile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/PercolatorOutfile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/PercolatorOutfile.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/PercolatorOutfile.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 49%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/ProtXMLFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/ProtXMLFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/ProtXMLFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/ProtXMLFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/ProtXMLFile.cpp [ 49%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/QcMLFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/QcMLFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/QcMLFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/QcMLFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/QcMLFile.cpp [ 49%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/SequestInfile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/SequestInfile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/SequestInfile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/SequestInfile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/SequestInfile.cpp [ 49%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/SequestOutfile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/SequestOutfile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/SequestOutfile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/SequestOutfile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/SequestOutfile.cpp [ 49%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/SpecArrayFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/SpecArrayFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/SpecArrayFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/SpecArrayFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/SpecArrayFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/SpecArrayFile.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/SpecArrayFile.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/SpecArrayFile.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 49%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/SqliteConnector.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/SqliteConnector.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/SqliteConnector.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/SqliteConnector.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/SqliteConnector.cpp [ 49%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/SqMassFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/SqMassFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/SqMassFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/SqMassFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/SqMassFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/SqMassFile.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/SqMassFile.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 49%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/SwathFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/SwathFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/SwathFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/SwathFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/SwathFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessSqMass.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/SwathFile.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/SwathMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/SwathFile.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/SwathFile.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessSqMass.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessSqMass.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathHelper.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/DATAACCESS/SwathFileConsumer.h:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/SwathFile.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathScoring.h:46, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathHelper.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:157:17: note: by 'OpenMS::DIAScoring& OpenMS::DIAScoring::operator=(const OpenMS::DIAScoring&)' 157 | DIAScoring& operator=(const DIAScoring& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SONARScoring.h:83:19: note: by 'OpenMS::SONARScoring& OpenMS::SONARScoring::operator=(const OpenMS::SONARScoring&)' 83 | SONARScoring& operator=(const SONARScoring& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: note: by 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' 91 | virtual Fitter1D& operator=(const Fitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: warning: 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: note: by 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' 101 | virtual LevMarqFitter1D & operator=(const LevMarqFitter1D & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: warning: 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h:61:26: note: by 'virtual OpenMS::EmgFitter1D& OpenMS::EmgFitter1D::operator=(const OpenMS::EmgFitter1D&)' 61 | virtual EmgFitter1D& operator=(const EmgFitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgModel.h:68:24: note: by 'virtual OpenMS::EmgModel& OpenMS::EmgModel::operator=(const OpenMS::EmgModel&)' 68 | virtual EmgModel & operator=(const EmgModel & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/GaussFilter.h:74:23: note: by 'OpenMS::GaussFilter& OpenMS::GaussFilter::operator=(const OpenMS::GaussFilter&)' 74 | class OPENMS_DLLAPI GaussFilter : | ^~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:93:23: note: by 'OpenMS::MRMFeatureFinderScoring& OpenMS::MRMFeatureFinderScoring::operator=(const OpenMS::MRMFeatureFinderScoring&)' 93 | class OPENMS_DLLAPI MRMFeatureFinderScoring : | ^~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/SVOutStream.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/SVOutStream.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/SVOutStream.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/SVOutStream.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/SVOutStream.cpp [ 49%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/TextFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/TextFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/TextFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/TextFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/TextFile.cpp [ 49%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/ToolDescriptionFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/ToolDescriptionFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/ToolDescriptionFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/ToolDescriptionFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/ToolDescriptionFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/ToolDescriptionFile.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/ToolDescriptionFile.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h: In instantiation of 'void std::_Construct(_Tp*, _Args&& ...) [with _Tp = OpenMS::Internal::ToolDescription; _Args = {OpenMS::Internal::ToolDescription&}]': /usr/include/c++/13/bits/stl_uninitialized.h:120:21: required from '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = OpenMS::Internal::ToolDescription*; _ForwardIterator = OpenMS::Internal::ToolDescription*]' /usr/include/c++/13/bits/stl_uninitialized.h:137:32: required from 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = OpenMS::Internal::ToolDescription*; _ForwardIterator = OpenMS::Internal::ToolDescription*; bool _TrivialValueTypes = false]' /usr/include/c++/13/bits/stl_uninitialized.h:185:15: required from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = OpenMS::Internal::ToolDescription*; _ForwardIterator = OpenMS::Internal::ToolDescription*]' /usr/include/c++/13/bits/stl_uninitialized.h:373:37: required from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = OpenMS::Internal::ToolDescription*; _ForwardIterator = OpenMS::Internal::ToolDescription*; _Tp = OpenMS::Internal::ToolDescription]' /usr/include/c++/13/bits/vector.tcc:257:35: required from 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = OpenMS::Internal::ToolDescription; _Alloc = std::allocator]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/ToolDescriptionFile.cpp:55:39: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h:122:26: warning: implicitly-declared 'OpenMS::Internal::ToolDescriptionInternal::ToolDescriptionInternal(const OpenMS::Internal::ToolDescriptionInternal&)' is deprecated [-Wdeprecated-copy] 122 | struct OPENMS_DLLAPI ToolDescription : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h:99:32: note: because 'OpenMS::Internal::ToolDescriptionInternal' has user-provided 'OpenMS::Internal::ToolDescriptionInternal& OpenMS::Internal::ToolDescriptionInternal::operator=(const OpenMS::Internal::ToolDescriptionInternal&)' 99 | ToolDescriptionInternal& operator=(const ToolDescriptionInternal& rhs); | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tempbuf.h:61, from /usr/include/c++/13/bits/stl_algo.h:69, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/XMLFile.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/ToolDescriptionFile.h:37: /usr/include/c++/13/bits/stl_construct.h:119:7: note: synthesized method 'OpenMS::Internal::ToolDescription::ToolDescription(const OpenMS::Internal::ToolDescription&)' first required here 119 | ::new((void*)__p) _Tp(std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h: In instantiation of 'void std::_Construct(_Tp*, _Args&& ...) [with _Tp = OpenMS::Internal::ToolExternalDetails; _Args = {const OpenMS::Internal::ToolExternalDetails&}]': /usr/include/c++/13/bits/stl_uninitialized.h:120:21: required from '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenMS::Internal::ToolExternalDetails*]' /usr/include/c++/13/bits/stl_uninitialized.h:137:32: required from 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenMS::Internal::ToolExternalDetails*; bool _TrivialValueTypes = false]' /usr/include/c++/13/bits/stl_uninitialized.h:185:15: required from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenMS::Internal::ToolExternalDetails*]' /usr/include/c++/13/bits/stl_uninitialized.h:373:37: required from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenMS::Internal::ToolExternalDetails*; _Tp = OpenMS::Internal::ToolExternalDetails]' /usr/include/c++/13/bits/stl_vector.h:606:31: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/include/c++/13/bits/stl_uninitialized.h:120:21: required from '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = OpenMS::Internal::ToolDescription*; _ForwardIterator = OpenMS::Internal::ToolDescription*]' /usr/include/c++/13/bits/stl_uninitialized.h:137:32: required from 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = OpenMS::Internal::ToolDescription*; _ForwardIterator = OpenMS::Internal::ToolDescription*; bool _TrivialValueTypes = false]' /usr/include/c++/13/bits/stl_uninitialized.h:185:15: required from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = OpenMS::Internal::ToolDescription*; _ForwardIterator = OpenMS::Internal::ToolDescription*]' /usr/include/c++/13/bits/stl_uninitialized.h:373:37: required from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = OpenMS::Internal::ToolDescription*; _ForwardIterator = OpenMS::Internal::ToolDescription*; _Tp = OpenMS::Internal::ToolDescription]' /usr/include/c++/13/bits/vector.tcc:257:35: required from 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = OpenMS::Internal::ToolDescription; _Alloc = std::allocator]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/ToolDescriptionFile.cpp:55:39: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h:106:26: warning: implicitly-declared 'OpenMS::Internal::MappingParam::MappingParam(const OpenMS::Internal::MappingParam&)' is deprecated [-Wdeprecated-copy] 106 | struct OPENMS_DLLAPI ToolExternalDetails | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h:72:35: note: because 'OpenMS::Internal::MappingParam' has user-provided 'OpenMS::Internal::MappingParam& OpenMS::Internal::MappingParam::operator=(const OpenMS::Internal::MappingParam&)' 72 | OPENMS_DLLAPI MappingParam& operator=(const MappingParam& rhs); | ^~~~~~~~ /usr/include/c++/13/bits/stl_construct.h:119:7: note: synthesized method 'OpenMS::Internal::ToolExternalDetails::ToolExternalDetails(const OpenMS::Internal::ToolExternalDetails&)' first required here 119 | ::new((void*)__p) _Tp(std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/TraMLFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/TraMLFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/TraMLFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/TraMLFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/TraMLFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/TraMLFile.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/XMLFile.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/TraMLFile.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/TraMLFile.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 50%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/TransformationXMLFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/TransformationXMLFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/TransformationXMLFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/TransformationXMLFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/TransformationXMLFile.cpp [ 50%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/UnimodXMLFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/UnimodXMLFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/UnimodXMLFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/UnimodXMLFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/UnimodXMLFile.cpp [ 50%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/XMassFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/XMassFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/XMassFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/XMassFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/XMassFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/XMassFile.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/XMassFile.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/HANDLERS/AcqusHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/XMassFile.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 50%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/XMLFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/XMLFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/XMLFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/XMLFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/XMLFile.cpp [ 50%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/XQuestResultXMLFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/XQuestResultXMLFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/XQuestResultXMLFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/XQuestResultXMLFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/XQuestResultXMLFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/OPXLDataStructs.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/XQuestResultXMLFile.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/XQuestResultXMLFile.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/FileTypes.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/FileHandler.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/XQuestResultXMLFile.cpp:34: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 50%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/XTandemInfile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/XTandemInfile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/XTandemInfile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/XTandemInfile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/XTandemInfile.cpp [ 50%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/XTandemXMLFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/XTandemXMLFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/XTandemXMLFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/XTandemXMLFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/XTandemXMLFile.cpp [ 50%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/ZlibCompression.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/ZlibCompression.cpp.o -MF CMakeFiles/OpenMS.dir/source/FORMAT/ZlibCompression.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FORMAT/ZlibCompression.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FORMAT/ZlibCompression.cpp [ 50%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/IsobaricChannelExtractor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/IsobaricChannelExtractor.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/IsobaricChannelExtractor.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/IsobaricChannelExtractor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/IsobaricChannelExtractor.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricChannelExtractor.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/IsobaricChannelExtractor.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricChannelExtractor.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricChannelExtractor.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricChannelExtractor.h:84:31: note: by 'OpenMS::IsobaricChannelExtractor& OpenMS::IsobaricChannelExtractor::operator=(const OpenMS::IsobaricChannelExtractor&)' 84 | IsobaricChannelExtractor& operator=(const IsobaricChannelExtractor& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/IsobaricChannelExtractor.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:54:23: note: by 'OpenMS::IsobaricQuantitationMethod& OpenMS::IsobaricQuantitationMethod::operator=(const OpenMS::IsobaricQuantitationMethod&)' 54 | class OPENMS_DLLAPI IsobaricQuantitationMethod : | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/IsobaricChannelExtractor.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/TMTTenPlexQuantitationMethod.h:62:36: note: by 'OpenMS::TMTTenPlexQuantitationMethod& OpenMS::TMTTenPlexQuantitationMethod::operator=(const OpenMS::TMTTenPlexQuantitationMethod&)' 62 | TMTTenPlexQuantitationMethod & operator=(const TMTTenPlexQuantitationMethod& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/IsobaricChannelExtractor.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/TMTElevenPlexQuantitationMethod.h:62:39: note: by 'OpenMS::TMTElevenPlexQuantitationMethod& OpenMS::TMTElevenPlexQuantitationMethod::operator=(const OpenMS::TMTElevenPlexQuantitationMethod&)' 62 | TMTElevenPlexQuantitationMethod & operator=(const TMTElevenPlexQuantitationMethod& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/IsobaricChannelExtractor.cpp:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:97:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 97 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:133:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 133 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:171:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 171 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:207:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 207 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:242:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 242 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:278:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 278 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:309:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 309 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:343:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 343 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:395:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 395 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:444:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 444 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:489:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 489 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:527:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 527 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:564:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 564 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:617:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 617 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:663:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 663 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/IsobaricChannelExtractor.cpp:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/IsobaricChannelExtractor.cpp: In member function 'void OpenMS::IsobaricChannelExtractor::registerChannelsInOutputMap_(OpenMS::ConsensusMap&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/IsobaricChannelExtractor.cpp:751:49: warning: implicitly-declared 'OpenMS::ConsensusMap::ColumnHeader& OpenMS::ConsensusMap::ColumnHeader::operator=(const OpenMS::ConsensusMap::ColumnHeader&)' is deprecated [-Wdeprecated-copy] 751 | consensus_map.getColumnHeaders()[index] = channel_as_map; | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/IsobaricChannelExtractor.cpp:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:133:7: note: because 'OpenMS::ConsensusMap::ColumnHeader' has user-provided 'OpenMS::ConsensusMap::ColumnHeader::ColumnHeader(const OpenMS::ConsensusMap::ColumnHeader&)' 133 | ColumnHeader(const ColumnHeader&); | ^~~~~~~~~~~~ [ 50%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/IsobaricIsotopeCorrector.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/IsobaricIsotopeCorrector.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/IsobaricIsotopeCorrector.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/IsobaricIsotopeCorrector.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/IsobaricIsotopeCorrector.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/IsobaricIsotopeCorrector.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Matrix.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricIsotopeCorrector.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/IsobaricIsotopeCorrector.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:54:23: note: by 'OpenMS::IsobaricQuantitationMethod& OpenMS::IsobaricQuantitationMethod::operator=(const OpenMS::IsobaricQuantitationMethod&)' 54 | class OPENMS_DLLAPI IsobaricQuantitationMethod : | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/IsobaricIsotopeCorrector.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 50%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/IsobaricNormalizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/IsobaricNormalizer.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/IsobaricNormalizer.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/IsobaricNormalizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/IsobaricNormalizer.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricNormalizer.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/IsobaricNormalizer.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricNormalizer.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricNormalizer.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/IsobaricNormalizer.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:54:23: note: by 'OpenMS::IsobaricQuantitationMethod& OpenMS::IsobaricQuantitationMethod::operator=(const OpenMS::IsobaricQuantitationMethod&)' 54 | class OPENMS_DLLAPI IsobaricQuantitationMethod : | ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/IsobaricNormalizer.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 50%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/IsobaricQuantifier.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/IsobaricQuantifier.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/IsobaricQuantifier.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/IsobaricQuantifier.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/IsobaricQuantifier.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantifier.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/IsobaricQuantifier.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantifier.h:66:25: note: by 'OpenMS::IsobaricQuantifier& OpenMS::IsobaricQuantifier::operator=(const OpenMS::IsobaricQuantifier&)' 66 | IsobaricQuantifier& operator=(const IsobaricQuantifier& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/IsobaricQuantifier.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/IsobaricQuantifier.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:54:23: note: by 'OpenMS::IsobaricQuantitationMethod& OpenMS::IsobaricQuantitationMethod::operator=(const OpenMS::IsobaricQuantitationMethod&)' 54 | class OPENMS_DLLAPI IsobaricQuantitationMethod : | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/IsobaricQuantifierStatistics.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/IsobaricQuantifierStatistics.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/IsobaricQuantifierStatistics.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/IsobaricQuantifierStatistics.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/IsobaricQuantifierStatistics.cpp [ 52%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:54:23: note: by 'OpenMS::IsobaricQuantitationMethod& OpenMS::IsobaricQuantitationMethod::operator=(const OpenMS::IsobaricQuantitationMethod&)' 54 | class OPENMS_DLLAPI IsobaricQuantitationMethod : | ^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/ItraqConstants.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/ItraqConstants.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/ItraqConstants.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/ItraqConstants.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/ItraqConstants.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/ItraqConstants.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/ItraqConstants.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Map.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/ItraqConstants.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 52%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/ItraqEightPlexQuantitationMethod.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/ItraqEightPlexQuantitationMethod.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/ItraqEightPlexQuantitationMethod.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/ItraqEightPlexQuantitationMethod.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/ItraqEightPlexQuantitationMethod.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/ItraqEightPlexQuantitationMethod.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/ItraqEightPlexQuantitationMethod.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:54:23: note: by 'OpenMS::IsobaricQuantitationMethod& OpenMS::IsobaricQuantitationMethod::operator=(const OpenMS::IsobaricQuantitationMethod&)' 54 | class OPENMS_DLLAPI IsobaricQuantitationMethod : | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/ItraqEightPlexQuantitationMethod.h:62:40: note: by 'OpenMS::ItraqEightPlexQuantitationMethod& OpenMS::ItraqEightPlexQuantitationMethod::operator=(const OpenMS::ItraqEightPlexQuantitationMethod&)' 62 | ItraqEightPlexQuantitationMethod & operator=(const ItraqEightPlexQuantitationMethod& rhs); | ^~~~~~~~ [ 52%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/ItraqFourPlexQuantitationMethod.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/ItraqFourPlexQuantitationMethod.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/ItraqFourPlexQuantitationMethod.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/ItraqFourPlexQuantitationMethod.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/ItraqFourPlexQuantitationMethod.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/ItraqFourPlexQuantitationMethod.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/ItraqFourPlexQuantitationMethod.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:54:23: note: by 'OpenMS::IsobaricQuantitationMethod& OpenMS::IsobaricQuantitationMethod::operator=(const OpenMS::IsobaricQuantitationMethod&)' 54 | class OPENMS_DLLAPI IsobaricQuantitationMethod : | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/ItraqFourPlexQuantitationMethod.h:60:38: note: by 'OpenMS::ItraqFourPlexQuantitationMethod& OpenMS::ItraqFourPlexQuantitationMethod::operator=(const OpenMS::ItraqFourPlexQuantitationMethod&)' 60 | ItraqFourPlexQuantitationMethod& operator=(const ItraqFourPlexQuantitationMethod& rhs); | ^~~~~~~~ [ 52%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DBoundingBox.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ConvexHull2D.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.h:49:21: note: by 'OpenMS::KDTreeFeatureMaps& OpenMS::KDTreeFeatureMaps::operator=(const OpenMS::KDTreeFeatureMaps&)' 49 | class OPENMS_DLLAPI KDTreeFeatureMaps : public DefaultParamHandler | ^~~~~~~~~~~~~~~~~ [ 52%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/KDTreeFeatureNode.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/KDTreeFeatureNode.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/KDTreeFeatureNode.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/KDTreeFeatureNode.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/KDTreeFeatureNode.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/KDTreeFeatureNode.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureNode.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/KDTreeFeatureNode.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.h:49:21: note: by 'OpenMS::KDTreeFeatureMaps& OpenMS::KDTreeFeatureMaps::operator=(const OpenMS::KDTreeFeatureMaps&)' 49 | class OPENMS_DLLAPI KDTreeFeatureMaps : public DefaultParamHandler | ^~~~~~~~~~~~~~~~~ [ 52%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/PeptideAndProteinQuant.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/PeptideAndProteinQuant.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/PeptideAndProteinQuant.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/PeptideAndProteinQuant.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/PeptideAndProteinQuant.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/PeptideAndProteinQuant.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/PeptideAndProteinQuant.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/PeptideAndProteinQuant.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/PeptideAndProteinQuant.h:53:23: note: by 'OpenMS::PeptideAndProteinQuant& OpenMS::PeptideAndProteinQuant::operator=(const OpenMS::PeptideAndProteinQuant&)' 53 | class OPENMS_DLLAPI PeptideAndProteinQuant : | ^~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/ProteinInference.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/ProteinInference.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/ProteinInference.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/ProteinInference.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/ProteinInference.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/ProteinInference.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/ProteinInference.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/ProteinInference.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 52%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/ProteinResolver.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/ProteinResolver.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/ProteinResolver.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/ProteinResolver.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/ProteinResolver.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/ProteinResolver.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/ProteinResolver.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/ProteinResolver.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/ProteinResolver.h:69:23: note: by 'OpenMS::ProteinResolver& OpenMS::ProteinResolver::operator=(const OpenMS::ProteinResolver&)' 69 | ProteinResolver & operator=(const ProteinResolver & rhs); | ^~~~~~~~ [ 52%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/QuantitativeExperimentalDesign.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/QuantitativeExperimentalDesign.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/QuantitativeExperimentalDesign.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/QuantitativeExperimentalDesign.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/QuantitativeExperimentalDesign.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/PeptideAndProteinQuant.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/QuantitativeExperimentalDesign.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/QuantitativeExperimentalDesign.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/QuantitativeExperimentalDesign.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/PeptideAndProteinQuant.h:53:23: note: by 'OpenMS::PeptideAndProteinQuant& OpenMS::PeptideAndProteinQuant::operator=(const OpenMS::PeptideAndProteinQuant&)' 53 | class OPENMS_DLLAPI PeptideAndProteinQuant : | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/QuantitativeExperimentalDesign.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/ProteinResolver.h:69:23: note: by 'OpenMS::ProteinResolver& OpenMS::ProteinResolver::operator=(const OpenMS::ProteinResolver&)' 69 | ProteinResolver & operator=(const ProteinResolver & rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/QuantitativeExperimentalDesign.h:79:38: note: by 'OpenMS::QuantitativeExperimentalDesign& OpenMS::QuantitativeExperimentalDesign::operator=(const OpenMS::QuantitativeExperimentalDesign&)' 79 | QuantitativeExperimentalDesign & operator=(const QuantitativeExperimentalDesign &); | ^~~~~~~~ [ 52%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/TMTSixteenPlexQuantitationMethod.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/TMTSixteenPlexQuantitationMethod.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/TMTSixteenPlexQuantitationMethod.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/TMTSixteenPlexQuantitationMethod.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/TMTSixteenPlexQuantitationMethod.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/TMTSixteenPlexQuantitationMethod.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/TMTSixteenPlexQuantitationMethod.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:54:23: note: by 'OpenMS::IsobaricQuantitationMethod& OpenMS::IsobaricQuantitationMethod::operator=(const OpenMS::IsobaricQuantitationMethod&)' 54 | class OPENMS_DLLAPI IsobaricQuantitationMethod : | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/TMTSixteenPlexQuantitationMethod.h:62:40: note: by 'OpenMS::TMTSixteenPlexQuantitationMethod& OpenMS::TMTSixteenPlexQuantitationMethod::operator=(const OpenMS::TMTSixteenPlexQuantitationMethod&)' 62 | TMTSixteenPlexQuantitationMethod & operator=(const TMTSixteenPlexQuantitationMethod& rhs); | ^~~~~~~~ [ 52%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/TMTElevenPlexQuantitationMethod.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/TMTElevenPlexQuantitationMethod.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/TMTElevenPlexQuantitationMethod.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/TMTElevenPlexQuantitationMethod.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/TMTElevenPlexQuantitationMethod.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/TMTElevenPlexQuantitationMethod.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/TMTElevenPlexQuantitationMethod.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:54:23: note: by 'OpenMS::IsobaricQuantitationMethod& OpenMS::IsobaricQuantitationMethod::operator=(const OpenMS::IsobaricQuantitationMethod&)' 54 | class OPENMS_DLLAPI IsobaricQuantitationMethod : | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/TMTElevenPlexQuantitationMethod.h:62:39: note: by 'OpenMS::TMTElevenPlexQuantitationMethod& OpenMS::TMTElevenPlexQuantitationMethod::operator=(const OpenMS::TMTElevenPlexQuantitationMethod&)' 62 | TMTElevenPlexQuantitationMethod & operator=(const TMTElevenPlexQuantitationMethod& rhs); | ^~~~~~~~ [ 52%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/TMTSixPlexQuantitationMethod.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/TMTSixPlexQuantitationMethod.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/TMTSixPlexQuantitationMethod.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/TMTSixPlexQuantitationMethod.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/TMTSixPlexQuantitationMethod.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/TMTSixPlexQuantitationMethod.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/TMTSixPlexQuantitationMethod.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:54:23: note: by 'OpenMS::IsobaricQuantitationMethod& OpenMS::IsobaricQuantitationMethod::operator=(const OpenMS::IsobaricQuantitationMethod&)' 54 | class OPENMS_DLLAPI IsobaricQuantitationMethod : | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/TMTSixPlexQuantitationMethod.h:62:36: note: by 'OpenMS::TMTSixPlexQuantitationMethod& OpenMS::TMTSixPlexQuantitationMethod::operator=(const OpenMS::TMTSixPlexQuantitationMethod&)' 62 | TMTSixPlexQuantitationMethod & operator=(const TMTSixPlexQuantitationMethod& rhs); | ^~~~~~~~ [ 54%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/TMTTenPlexQuantitationMethod.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/TMTTenPlexQuantitationMethod.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/TMTTenPlexQuantitationMethod.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/TMTTenPlexQuantitationMethod.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/TMTTenPlexQuantitationMethod.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/TMTTenPlexQuantitationMethod.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/TMTTenPlexQuantitationMethod.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h:54:23: note: by 'OpenMS::IsobaricQuantitationMethod& OpenMS::IsobaricQuantitationMethod::operator=(const OpenMS::IsobaricQuantitationMethod&)' 54 | class OPENMS_DLLAPI IsobaricQuantitationMethod : | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/TMTTenPlexQuantitationMethod.h:62:36: note: by 'OpenMS::TMTTenPlexQuantitationMethod& OpenMS::TMTTenPlexQuantitationMethod::operator=(const OpenMS::TMTTenPlexQuantitationMethod&)' 62 | TMTTenPlexQuantitationMethod & operator=(const TMTTenPlexQuantitationMethod& rhs); | ^~~~~~~~ [ 54%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/AbsoluteQuantitation.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/AbsoluteQuantitation.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/AbsoluteQuantitation.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/AbsoluteQuantitation.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/AbsoluteQuantitation.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/AbsoluteQuantitation.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/AbsoluteQuantitation.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/AbsoluteQuantitation.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/AbsoluteQuantitation.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/AbsoluteQuantitation.h:51: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/AbsoluteQuantitation.h:84:23: note: by 'OpenMS::AbsoluteQuantitation& OpenMS::AbsoluteQuantitation::operator=(const OpenMS::AbsoluteQuantitation&)' 84 | class OPENMS_DLLAPI AbsoluteQuantitation : | ^~~~~~~~~~~~~~~~~~~~ [ 54%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.cpp [ 54%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/SVM/SimpleSVM.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/SVM/SimpleSVM.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/SVM/SimpleSVM.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/SVM/SimpleSVM.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/SVM/SimpleSVM.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/SVM/SimpleSVM.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/SVM/SimpleSVM.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/SVM/SimpleSVM.h:65:23: note: by 'OpenMS::SimpleSVM& OpenMS::SimpleSVM::operator=(const OpenMS::SimpleSVM&)' 65 | class OPENMS_DLLAPI SimpleSVM : | ^~~~~~~~~ [ 54%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/SVM/SVMWrapper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/SVM/SVMWrapper.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/SVM/SVMWrapper.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/SVM/SVMWrapper.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/SVM/SVMWrapper.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/SVM/SVMWrapper.cpp: In static member function 'static void OpenMS::SVMWrapper::createRandomPartitions(svm_problem*, OpenMS::Size, std::vector&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/SVM/SVMWrapper.cpp:611:21: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 611 | random_shuffle(indices.begin(), indices.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/SVM/SVMWrapper.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/SVM/SVMWrapper.cpp:35: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/SVM/SVMWrapper.cpp: In static member function 'static void OpenMS::SVMWrapper::createRandomPartitions(const OpenMS::SVMData&, OpenMS::Size, std::vector&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/SVM/SVMWrapper.cpp:679:21: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 679 | random_shuffle(indices.begin(), indices.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 54%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/BaseGroupFinder.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/BaseGroupFinder.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/BaseGroupFinder.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/BaseGroupFinder.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/BaseGroupFinder.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/BaseGroupFinder.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdGenerator.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdInterface.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h:97:23: note: by 'OpenMS::BaseGroupFinder& OpenMS::BaseGroupFinder::operator=(const OpenMS::BaseGroupFinder&)' 97 | BaseGroupFinder & operator=(const BaseGroupFinder &); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/BaseGroupFinder.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/SimplePairFinder.h:81:23: note: by 'OpenMS::SimplePairFinder& OpenMS::SimplePairFinder::operator=(const OpenMS::SimplePairFinder&)' 81 | class OPENMS_DLLAPI SimplePairFinder : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/BaseGroupFinder.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/LabeledPairFinder.h:115:25: note: by 'OpenMS::LabeledPairFinder& OpenMS::LabeledPairFinder::operator=(const OpenMS::LabeledPairFinder&)' 115 | LabeledPairFinder & operator=(const LabeledPairFinder & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/BaseGroupFinder.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/StablePairFinder.h:109:23: note: by 'OpenMS::StablePairFinder& OpenMS::StablePairFinder::operator=(const OpenMS::StablePairFinder&)' 109 | class OPENMS_DLLAPI StablePairFinder : | ^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/QTClusterFinder.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/BaseGroupFinder.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/CLUSTERING/HashGrid.h:95:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 95 | public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/CLUSTERING/HashGrid.h:173:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 173 | public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/QTClusterFinder.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureDistance.h:109:23: note: by 'OpenMS::FeatureDistance& OpenMS::FeatureDistance::operator=(const OpenMS::FeatureDistance&)' 109 | FeatureDistance & operator=(const FeatureDistance & other); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/QTClusterFinder.h:104:23: note: by 'OpenMS::QTClusterFinder& OpenMS::QTClusterFinder::operator=(const OpenMS::QTClusterFinder&)' 104 | class OPENMS_DLLAPI QTClusterFinder : | ^~~~~~~~~~~~~~~ [ 54%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/BaseSuperimposer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/BaseSuperimposer.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/BaseSuperimposer.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/BaseSuperimposer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/BaseSuperimposer.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseSuperimposer.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/BaseSuperimposer.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/TransformationDescription.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseSuperimposer.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseSuperimposer.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseSuperimposer.h:86:23: note: by 'OpenMS::BaseSuperimposer& OpenMS::BaseSuperimposer::operator=(const OpenMS::BaseSuperimposer&)' 86 | BaseSuperimposer& operator=(const BaseSuperimposer&); | ^~~~~~~~ [ 54%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmThreshold.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmThreshold.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmThreshold.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmThreshold.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmThreshold.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmThreshold.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmThreshold.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdGenerator.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdInterface.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 54%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmMedian.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmMedian.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmMedian.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmMedian.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmMedian.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmMedian.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmMedian.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdGenerator.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdInterface.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 54%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmQuantile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmQuantile.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmQuantile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmQuantile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmQuantile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmQuantile.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmQuantile.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdGenerator.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdInterface.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 54%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureDistance.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureDistance.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureDistance.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureDistance.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/FeatureDistance.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureDistance.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/FeatureDistance.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureDistance.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureDistance.h:109:23: note: by 'OpenMS::FeatureDistance& OpenMS::FeatureDistance::operator=(const OpenMS::FeatureDistance&)' 109 | FeatureDistance & operator=(const FeatureDistance & other); | ^~~~~~~~ [ 54%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.h:120:32: note: by 'OpenMS::FeatureGroupingAlgorithm& OpenMS::FeatureGroupingAlgorithm::operator=(const OpenMS::FeatureGroupingAlgorithm&)' 120 | FeatureGroupingAlgorithm & operator=(const FeatureGroupingAlgorithm &); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmLabeled.h:88:39: note: by 'OpenMS::FeatureGroupingAlgorithmLabeled& OpenMS::FeatureGroupingAlgorithmLabeled::operator=(const OpenMS::FeatureGroupingAlgorithmLabeled&)' 88 | FeatureGroupingAlgorithmLabeled & operator=(const FeatureGroupingAlgorithmLabeled &); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmUnlabeled.h:136:41: note: by 'OpenMS::FeatureGroupingAlgorithmUnlabeled& OpenMS::FeatureGroupingAlgorithmUnlabeled::operator=(const OpenMS::FeatureGroupingAlgorithmUnlabeled&)' 136 | FeatureGroupingAlgorithmUnlabeled & operator=(const FeatureGroupingAlgorithmUnlabeled &); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmQT.h:99:33: note: by 'OpenMS::FeatureGroupingAlgorithmQT& OpenMS::FeatureGroupingAlgorithmQT::operator=(const OpenMS::FeatureGroupingAlgorithmQT&)' 99 | FeatureGroupingAlgorithmQT& operator=(const FeatureGroupingAlgorithmQT&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmKD.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.cpp:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.h:49:21: note: by 'OpenMS::KDTreeFeatureMaps& OpenMS::KDTreeFeatureMaps::operator=(const OpenMS::KDTreeFeatureMaps&)' 49 | class OPENMS_DLLAPI KDTreeFeatureMaps : public DefaultParamHandler | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmKD.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureDistance.h:109:23: note: by 'OpenMS::FeatureDistance& OpenMS::FeatureDistance::operator=(const OpenMS::FeatureDistance&)' 109 | FeatureDistance & operator=(const FeatureDistance & other); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmKD.h:224:33: note: by 'OpenMS::FeatureGroupingAlgorithmKD& OpenMS::FeatureGroupingAlgorithmKD::operator=(const OpenMS::FeatureGroupingAlgorithmKD&)' 224 | FeatureGroupingAlgorithmKD& operator=(const FeatureGroupingAlgorithmKD&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.cpp: In member function 'void OpenMS::FeatureGroupingAlgorithm::transferSubelements(const std::vector&, OpenMS::ConsensusMap&) const': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.cpp:93:52: warning: implicitly-declared 'OpenMS::ConsensusMap::ColumnHeader& OpenMS::ConsensusMap::ColumnHeader::operator=(const OpenMS::ConsensusMap::ColumnHeader&)' is deprecated [-Wdeprecated-copy] 93 | out.getColumnHeaders()[counter] = desc_it->second; | ^~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:133:7: note: because 'OpenMS::ConsensusMap::ColumnHeader' has user-provided 'OpenMS::ConsensusMap::ColumnHeader::ColumnHeader(const OpenMS::ConsensusMap::ColumnHeader&)' 133 | ColumnHeader(const ColumnHeader&); | ^~~~~~~~~~~~ [ 54%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmLabeled.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmLabeled.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmLabeled.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmLabeled.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmLabeled.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmLabeled.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmLabeled.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.h:120:32: note: by 'OpenMS::FeatureGroupingAlgorithm& OpenMS::FeatureGroupingAlgorithm::operator=(const OpenMS::FeatureGroupingAlgorithm&)' 120 | FeatureGroupingAlgorithm & operator=(const FeatureGroupingAlgorithm &); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmLabeled.h:88:39: note: by 'OpenMS::FeatureGroupingAlgorithmLabeled& OpenMS::FeatureGroupingAlgorithmLabeled::operator=(const OpenMS::FeatureGroupingAlgorithmLabeled&)' 88 | FeatureGroupingAlgorithmLabeled & operator=(const FeatureGroupingAlgorithmLabeled &); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/LabeledPairFinder.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmLabeled.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h:97:23: note: by 'OpenMS::BaseGroupFinder& OpenMS::BaseGroupFinder::operator=(const OpenMS::BaseGroupFinder&)' 97 | BaseGroupFinder & operator=(const BaseGroupFinder &); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/LabeledPairFinder.h:115:25: note: by 'OpenMS::LabeledPairFinder& OpenMS::LabeledPairFinder::operator=(const OpenMS::LabeledPairFinder&)' 115 | LabeledPairFinder & operator=(const LabeledPairFinder & source); | ^~~~~~~~ [ 54%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmKD.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmKD.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmKD.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmKD.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmKD.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmKD.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmKD.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.h:120:32: note: by 'OpenMS::FeatureGroupingAlgorithm& OpenMS::FeatureGroupingAlgorithm::operator=(const OpenMS::FeatureGroupingAlgorithm&)' 120 | FeatureGroupingAlgorithm & operator=(const FeatureGroupingAlgorithm &); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmKD.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.h:49:21: note: by 'OpenMS::KDTreeFeatureMaps& OpenMS::KDTreeFeatureMaps::operator=(const OpenMS::KDTreeFeatureMaps&)' 49 | class OPENMS_DLLAPI KDTreeFeatureMaps : public DefaultParamHandler | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmKD.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureDistance.h:109:23: note: by 'OpenMS::FeatureDistance& OpenMS::FeatureDistance::operator=(const OpenMS::FeatureDistance&)' 109 | FeatureDistance & operator=(const FeatureDistance & other); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmKD.h:224:33: note: by 'OpenMS::FeatureGroupingAlgorithmKD& OpenMS::FeatureGroupingAlgorithmKD::operator=(const OpenMS::FeatureGroupingAlgorithmKD&)' 224 | FeatureGroupingAlgorithmKD& operator=(const FeatureGroupingAlgorithmKD&); | ^~~~~~~~ [ 56%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmQT.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmQT.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmQT.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmQT.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmQT.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmQT.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmQT.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.h:120:32: note: by 'OpenMS::FeatureGroupingAlgorithm& OpenMS::FeatureGroupingAlgorithm::operator=(const OpenMS::FeatureGroupingAlgorithm&)' 120 | FeatureGroupingAlgorithm & operator=(const FeatureGroupingAlgorithm &); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmQT.h:99:33: note: by 'OpenMS::FeatureGroupingAlgorithmQT& OpenMS::FeatureGroupingAlgorithmQT::operator=(const OpenMS::FeatureGroupingAlgorithmQT&)' 99 | FeatureGroupingAlgorithmQT& operator=(const FeatureGroupingAlgorithmQT&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/QTClusterFinder.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmQT.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h:97:23: note: by 'OpenMS::BaseGroupFinder& OpenMS::BaseGroupFinder::operator=(const OpenMS::BaseGroupFinder&)' 97 | BaseGroupFinder & operator=(const BaseGroupFinder &); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/QTClusterFinder.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/CLUSTERING/HashGrid.h:95:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 95 | public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/CLUSTERING/HashGrid.h:173:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 173 | public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/QTClusterFinder.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureDistance.h:109:23: note: by 'OpenMS::FeatureDistance& OpenMS::FeatureDistance::operator=(const OpenMS::FeatureDistance&)' 109 | FeatureDistance & operator=(const FeatureDistance & other); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/QTClusterFinder.h:104:23: note: by 'OpenMS::QTClusterFinder& OpenMS::QTClusterFinder::operator=(const OpenMS::QTClusterFinder&)' 104 | class OPENMS_DLLAPI QTClusterFinder : | ^~~~~~~~~~~~~~~ [ 56%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmUnlabeled.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmUnlabeled.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmUnlabeled.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmUnlabeled.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmUnlabeled.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmUnlabeled.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmUnlabeled.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.h:120:32: note: by 'OpenMS::FeatureGroupingAlgorithm& OpenMS::FeatureGroupingAlgorithm::operator=(const OpenMS::FeatureGroupingAlgorithm&)' 120 | FeatureGroupingAlgorithm & operator=(const FeatureGroupingAlgorithm &); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmUnlabeled.h:136:41: note: by 'OpenMS::FeatureGroupingAlgorithmUnlabeled& OpenMS::FeatureGroupingAlgorithmUnlabeled::operator=(const OpenMS::FeatureGroupingAlgorithmUnlabeled&)' 136 | FeatureGroupingAlgorithmUnlabeled & operator=(const FeatureGroupingAlgorithmUnlabeled &); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/StablePairFinder.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmUnlabeled.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h:97:23: note: by 'OpenMS::BaseGroupFinder& OpenMS::BaseGroupFinder::operator=(const OpenMS::BaseGroupFinder&)' 97 | BaseGroupFinder & operator=(const BaseGroupFinder &); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/StablePairFinder.h:109:23: note: by 'OpenMS::StablePairFinder& OpenMS::StablePairFinder::operator=(const OpenMS::StablePairFinder&)' 109 | class OPENMS_DLLAPI StablePairFinder : | ^~~~~~~~~~~~~~~~ [ 56%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureMapping.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureMapping.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureMapping.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureMapping.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/FeatureMapping.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureMapping.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/FeatureMapping.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureMapping.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.h:49:21: note: by 'OpenMS::KDTreeFeatureMaps& OpenMS::KDTreeFeatureMaps::operator=(const OpenMS::KDTreeFeatureMaps&)' 49 | class OPENMS_DLLAPI KDTreeFeatureMaps : public DefaultParamHandler | ^~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureMapping.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 56%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/LabeledPairFinder.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/LabeledPairFinder.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/LabeledPairFinder.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/LabeledPairFinder.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/LabeledPairFinder.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/LabeledPairFinder.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/LabeledPairFinder.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdGenerator.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdInterface.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h:97:23: note: by 'OpenMS::BaseGroupFinder& OpenMS::BaseGroupFinder::operator=(const OpenMS::BaseGroupFinder&)' 97 | BaseGroupFinder & operator=(const BaseGroupFinder &); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/LabeledPairFinder.h:115:25: note: by 'OpenMS::LabeledPairFinder& OpenMS::LabeledPairFinder::operator=(const OpenMS::LabeledPairFinder&)' 115 | LabeledPairFinder & operator=(const LabeledPairFinder & source); | ^~~~~~~~ [ 56%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmIdentification.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmIdentification.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmIdentification.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmIdentification.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmIdentification.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmIdentification.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmIdentification.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/TransformationDescription.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmIdentification.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmIdentification.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmIdentification.h:335:42: note: by 'OpenMS::MapAlignmentAlgorithmIdentification& OpenMS::MapAlignmentAlgorithmIdentification::operator=(const OpenMS::MapAlignmentAlgorithmIdentification&)' 335 | MapAlignmentAlgorithmIdentification& operator=(const MapAlignmentAlgorithmIdentification&); | ^~~~~~~~ [ 56%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmKD.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmKD.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmKD.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmKD.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmKD.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmKD.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmKD.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DBoundingBox.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ConvexHull2D.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.h:49:21: note: by 'OpenMS::KDTreeFeatureMaps& OpenMS::KDTreeFeatureMaps::operator=(const OpenMS::KDTreeFeatureMaps&)' 49 | class OPENMS_DLLAPI KDTreeFeatureMaps : public DefaultParamHandler | ^~~~~~~~~~~~~~~~~ [ 56%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmPoseClustering.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmPoseClustering.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmPoseClustering.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmPoseClustering.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmPoseClustering.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/StablePairFinder.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmPoseClustering.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmPoseClustering.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/TransformationDescription.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmPoseClustering.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h:97:23: note: by 'OpenMS::BaseGroupFinder& OpenMS::BaseGroupFinder::operator=(const OpenMS::BaseGroupFinder&)' 97 | BaseGroupFinder & operator=(const BaseGroupFinder &); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/StablePairFinder.h:109:23: note: by 'OpenMS::StablePairFinder& OpenMS::StablePairFinder::operator=(const OpenMS::StablePairFinder&)' 109 | class OPENMS_DLLAPI StablePairFinder : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/PoseClusteringAffineSuperimposer.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmPoseClustering.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseSuperimposer.h:86:23: note: by 'OpenMS::BaseSuperimposer& OpenMS::BaseSuperimposer::operator=(const OpenMS::BaseSuperimposer&)' 86 | BaseSuperimposer& operator=(const BaseSuperimposer&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/PoseClusteringAffineSuperimposer.h:66:23: note: by 'OpenMS::PoseClusteringAffineSuperimposer& OpenMS::PoseClusteringAffineSuperimposer::operator=(const OpenMS::PoseClusteringAffineSuperimposer&)' 66 | class OPENMS_DLLAPI PoseClusteringAffineSuperimposer : | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmPoseClustering.h:110:42: note: by 'OpenMS::MapAlignmentAlgorithmPoseClustering& OpenMS::MapAlignmentAlgorithmPoseClustering::operator=(const OpenMS::MapAlignmentAlgorithmPoseClustering&)' 110 | MapAlignmentAlgorithmPoseClustering& operator=(const MapAlignmentAlgorithmPoseClustering&); | ^~~~~~~~ [ 56%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmTreeGuided.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmTreeGuided.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmTreeGuided.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmTreeGuided.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmTreeGuided.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/ConsensusXMLFile.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/APPLICATIONS/MapAlignerBase.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmTreeGuided.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmTreeGuided.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/ProgressLogger.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmTreeGuided.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/stl_tree.h:63: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmTreeGuided.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/APPLICATIONS/MapAlignerBase.h:45: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmIdentification.h:335:42: note: by 'OpenMS::MapAlignmentAlgorithmIdentification& OpenMS::MapAlignmentAlgorithmIdentification::operator=(const OpenMS::MapAlignmentAlgorithmIdentification&)' 335 | MapAlignmentAlgorithmIdentification& operator=(const MapAlignmentAlgorithmIdentification&); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/APPLICATIONS/MapAlignerBase.h:53: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/APPLICATIONS/TOPPBase.h:431:18: warning: 'virtual void OpenMS::TOPPBase::registerOptionsAndFlags_()' was hidden [-Woverloaded-virtual=] 431 | virtual void registerOptionsAndFlags_() = 0; | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/APPLICATIONS/MapAlignerBase.h:123:8: note: by 'void OpenMS::TOPPMapAlignerBase::registerOptionsAndFlags_(const OpenMS::String&, ReferenceParameterKind)' 123 | void registerOptionsAndFlags_(const String& file_formats, | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmTreeGuided.h:174:38: note: by 'OpenMS::MapAlignmentAlgorithmTreeGuided& OpenMS::MapAlignmentAlgorithmTreeGuided::operator=(const OpenMS::MapAlignmentAlgorithmTreeGuided&)' 174 | MapAlignmentAlgorithmTreeGuided& operator=(const MapAlignmentAlgorithmTreeGuided&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/CLUSTERING/ClusterHierarchical.h:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmTreeGuided.cpp:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:68:34: note: by 'OpenMS::PeakSpectrumCompareFunctor& OpenMS::PeakSpectrumCompareFunctor::operator=(const OpenMS::PeakSpectrumCompareFunctor&)' 68 | PeakSpectrumCompareFunctor & operator=(const PeakSpectrumCompareFunctor & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/CLUSTERING/ClusterHierarchical.h:49: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.h:73:35: note: by 'OpenMS::BinnedSpectrumCompareFunctor& OpenMS::BinnedSpectrumCompareFunctor::operator=(const OpenMS::BinnedSpectrumCompareFunctor&)' 73 | BinnedSpectrumCompareFunctor& operator=(const BinnedSpectrumCompareFunctor& source); | ^~~~~~~~ [ 56%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmSpectrumAlignment.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmSpectrumAlignment.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmSpectrumAlignment.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmSpectrumAlignment.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmSpectrumAlignment.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmSpectrumAlignment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmSpectrumAlignment.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:68:34: note: by 'OpenMS::PeakSpectrumCompareFunctor& OpenMS::PeakSpectrumCompareFunctor::operator=(const OpenMS::PeakSpectrumCompareFunctor&)' 68 | PeakSpectrumCompareFunctor & operator=(const PeakSpectrumCompareFunctor & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmSpectrumAlignment.h:72:46: note: by 'OpenMS::MapAlignmentAlgorithmSpectrumAlignment& OpenMS::MapAlignmentAlgorithmSpectrumAlignment::operator=(const OpenMS::MapAlignmentAlgorithmSpectrumAlignment&)' 72 | MapAlignmentAlgorithmSpectrumAlignment & operator=(const MapAlignmentAlgorithmSpectrumAlignment &); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmSpectrumAlignment.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/TransformationDescription.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmSpectrumAlignment.h:37: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 56%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithm.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithm.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithm.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithm.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithm.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithm.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithm.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdGenerator.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdInterface.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 56%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithmPrecision.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithmPrecision.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithmPrecision.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithmPrecision.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithmPrecision.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithm.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithmPrecision.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithmPrecision.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdGenerator.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdInterface.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 56%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithmRecall.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithmRecall.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithmRecall.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithmRecall.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithmRecall.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithm.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithmRecall.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithmRecall.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdGenerator.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdInterface.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 56%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentTransformer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentTransformer.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentTransformer.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/MapAlignmentTransformer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentTransformer.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentTransformer.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentTransformer.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentTransformer.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentTransformer.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/MapAlignmentTransformer.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 58%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/PoseClusteringAffineSuperimposer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/PoseClusteringAffineSuperimposer.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/PoseClusteringAffineSuperimposer.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/PoseClusteringAffineSuperimposer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/PoseClusteringAffineSuperimposer.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseSuperimposer.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/PoseClusteringAffineSuperimposer.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/PoseClusteringAffineSuperimposer.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/TransformationDescription.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseSuperimposer.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseSuperimposer.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseSuperimposer.h:86:23: note: by 'OpenMS::BaseSuperimposer& OpenMS::BaseSuperimposer::operator=(const OpenMS::BaseSuperimposer&)' 86 | BaseSuperimposer& operator=(const BaseSuperimposer&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/PoseClusteringAffineSuperimposer.h:66:23: note: by 'OpenMS::PoseClusteringAffineSuperimposer& OpenMS::PoseClusteringAffineSuperimposer::operator=(const OpenMS::PoseClusteringAffineSuperimposer&)' 66 | class OPENMS_DLLAPI PoseClusteringAffineSuperimposer : | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/PoseClusteringAffineSuperimposer.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/BASELINE/MorphologicalFilter.h:60:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 60 | public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/BASELINE/MorphologicalFilter.h:160:23: note: by 'OpenMS::MorphologicalFilter& OpenMS::MorphologicalFilter::operator=(const OpenMS::MorphologicalFilter&)' 160 | class OPENMS_DLLAPI MorphologicalFilter : | ^~~~~~~~~~~~~~~~~~~ [ 58%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/PoseClusteringShiftSuperimposer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/PoseClusteringShiftSuperimposer.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/PoseClusteringShiftSuperimposer.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/PoseClusteringShiftSuperimposer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/PoseClusteringShiftSuperimposer.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseSuperimposer.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/PoseClusteringShiftSuperimposer.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/PoseClusteringShiftSuperimposer.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/TransformationDescription.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseSuperimposer.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseSuperimposer.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseSuperimposer.h:86:23: note: by 'OpenMS::BaseSuperimposer& OpenMS::BaseSuperimposer::operator=(const OpenMS::BaseSuperimposer&)' 86 | BaseSuperimposer& operator=(const BaseSuperimposer&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/PoseClusteringShiftSuperimposer.h:64:23: note: by 'OpenMS::PoseClusteringShiftSuperimposer& OpenMS::PoseClusteringShiftSuperimposer::operator=(const OpenMS::PoseClusteringShiftSuperimposer&)' 64 | class OPENMS_DLLAPI PoseClusteringShiftSuperimposer : | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/PoseClusteringShiftSuperimposer.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/BASELINE/MorphologicalFilter.h:60:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 60 | public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/BASELINE/MorphologicalFilter.h:160:23: note: by 'OpenMS::MorphologicalFilter& OpenMS::MorphologicalFilter::operator=(const OpenMS::MorphologicalFilter&)' 160 | class OPENMS_DLLAPI MorphologicalFilter : | ^~~~~~~~~~~~~~~~~~~ [ 58%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/QTClusterFinder.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/QTClusterFinder.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/QTClusterFinder.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/QTClusterFinder.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/QTClusterFinder.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/QTClusterFinder.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/QTClusterFinder.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdGenerator.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdInterface.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h:97:23: note: by 'OpenMS::BaseGroupFinder& OpenMS::BaseGroupFinder::operator=(const OpenMS::BaseGroupFinder&)' 97 | BaseGroupFinder & operator=(const BaseGroupFinder &); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/QTClusterFinder.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/CLUSTERING/HashGrid.h:95:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 95 | public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/CLUSTERING/HashGrid.h:173:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 173 | public std::iterator | ^~~~~~~~ /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/QTClusterFinder.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureDistance.h:109:23: note: by 'OpenMS::FeatureDistance& OpenMS::FeatureDistance::operator=(const OpenMS::FeatureDistance&)' 109 | FeatureDistance & operator=(const FeatureDistance & other); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/QTClusterFinder.h:104:23: note: by 'OpenMS::QTClusterFinder& OpenMS::QTClusterFinder::operator=(const OpenMS::QTClusterFinder&)' 104 | class OPENMS_DLLAPI QTClusterFinder : | ^~~~~~~~~~~~~~~ [ 58%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/SimplePairFinder.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/SimplePairFinder.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/SimplePairFinder.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/SimplePairFinder.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/SimplePairFinder.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/SimplePairFinder.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/SimplePairFinder.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdGenerator.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdInterface.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h:97:23: note: by 'OpenMS::BaseGroupFinder& OpenMS::BaseGroupFinder::operator=(const OpenMS::BaseGroupFinder&)' 97 | BaseGroupFinder & operator=(const BaseGroupFinder &); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/SimplePairFinder.h:81:23: note: by 'OpenMS::SimplePairFinder& OpenMS::SimplePairFinder::operator=(const OpenMS::SimplePairFinder&)' 81 | class OPENMS_DLLAPI SimplePairFinder : | ^~~~~~~~~~~~~~~~ [ 58%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/StablePairFinder.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/StablePairFinder.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/StablePairFinder.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/StablePairFinder.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/StablePairFinder.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/StablePairFinder.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/StablePairFinder.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdGenerator.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdInterface.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h:97:23: note: by 'OpenMS::BaseGroupFinder& OpenMS::BaseGroupFinder::operator=(const OpenMS::BaseGroupFinder&)' 97 | BaseGroupFinder & operator=(const BaseGroupFinder &); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/StablePairFinder.h:109:23: note: by 'OpenMS::StablePairFinder& OpenMS::StablePairFinder::operator=(const OpenMS::StablePairFinder&)' 109 | class OPENMS_DLLAPI StablePairFinder : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/StablePairFinder.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureDistance.h:109:23: note: by 'OpenMS::FeatureDistance& OpenMS::FeatureDistance::operator=(const OpenMS::FeatureDistance&)' 109 | FeatureDistance & operator=(const FeatureDistance & other); | ^~~~~~~~ [ 58%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/TransformationDescription.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/TransformationDescription.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/TransformationDescription.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/TransformationDescription.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/TransformationDescription.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/TransformationDescription.cpp: In member function 'OpenMS::TransformationDescription::TransformationStatistics OpenMS::TransformationDescription::getStatistics() const': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/TransformationDescription.cpp:219:31: warning: implicitly-declared 'OpenMS::TransformationDescription::TransformationStatistics::TransformationStatistics(const OpenMS::TransformationDescription::TransformationStatistics&)' is deprecated [-Wdeprecated-copy] 219 | if (data_.empty()) return s; | ^ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/TransformationDescription.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/TransformationDescription.h:73:33: note: because 'OpenMS::TransformationDescription::TransformationStatistics' has user-provided 'OpenMS::TransformationDescription::TransformationStatistics& OpenMS::TransformationDescription::TransformationStatistics::operator=(const OpenMS::TransformationDescription::TransformationStatistics&)' 73 | TransformationStatistics& operator=(const TransformationStatistics& rhs) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/TransformationDescription.cpp:260:12: warning: implicitly-declared 'OpenMS::TransformationDescription::TransformationStatistics::TransformationStatistics(const OpenMS::TransformationDescription::TransformationStatistics&)' is deprecated [-Wdeprecated-copy] 260 | return s; | ^ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/TransformationDescription.h:73:33: note: because 'OpenMS::TransformationDescription::TransformationStatistics' has user-provided 'OpenMS::TransformationDescription::TransformationStatistics& OpenMS::TransformationDescription::TransformationStatistics::operator=(const OpenMS::TransformationDescription::TransformationStatistics&)' 73 | TransformationStatistics& operator=(const TransformationStatistics& rhs) | ^~~~~~~~ [ 58%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/TransformationModel.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/TransformationModel.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/TransformationModel.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/TransformationModel.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/TransformationModel.cpp [ 58%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/TransformationModelBSpline.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/TransformationModelBSpline.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/TransformationModelBSpline.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/TransformationModelBSpline.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/TransformationModelBSpline.cpp [ 58%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/TransformationModelLowess.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/TransformationModelLowess.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/TransformationModelLowess.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/TransformationModelLowess.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/TransformationModelLowess.cpp [ 58%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/TransformationModelLinear.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/TransformationModelLinear.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/TransformationModelLinear.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/TransformationModelLinear.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/TransformationModelLinear.cpp [ 58%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/TransformationModelInterpolated.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/TransformationModelInterpolated.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/TransformationModelInterpolated.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/TransformationModelInterpolated.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MAPMATCHING/TransformationModelInterpolated.cpp [ 58%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DECHARGING/FeatureDeconvolution.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DECHARGING/FeatureDeconvolution.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/DECHARGING/FeatureDeconvolution.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/DECHARGING/FeatureDeconvolution.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DECHARGING/FeatureDeconvolution.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DECHARGING/FeatureDeconvolution.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DECHARGING/FeatureDeconvolution.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DBoundingBox.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ConvexHull2D.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DECHARGING/FeatureDeconvolution.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DECHARGING/FeatureDeconvolution.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DECHARGING/FeatureDeconvolution.h:82:27: note: by 'OpenMS::FeatureDeconvolution& OpenMS::FeatureDeconvolution::operator=(const OpenMS::FeatureDeconvolution&)' 82 | FeatureDeconvolution& operator=(const FeatureDeconvolution& source); | ^~~~~~~~ [ 58%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DECHARGING/MetaboliteFeatureDeconvolution.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DECHARGING/MetaboliteFeatureDeconvolution.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/DECHARGING/MetaboliteFeatureDeconvolution.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/DECHARGING/MetaboliteFeatureDeconvolution.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DECHARGING/MetaboliteFeatureDeconvolution.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DECHARGING/MetaboliteFeatureDeconvolution.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DECHARGING/MetaboliteFeatureDeconvolution.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DBoundingBox.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ConvexHull2D.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DECHARGING/MetaboliteFeatureDeconvolution.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DECHARGING/MetaboliteFeatureDeconvolution.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DECHARGING/MetaboliteFeatureDeconvolution.h:82:37: note: by 'OpenMS::MetaboliteFeatureDeconvolution& OpenMS::MetaboliteFeatureDeconvolution::operator=(const OpenMS::MetaboliteFeatureDeconvolution&)' 82 | MetaboliteFeatureDeconvolution& operator=(const MetaboliteFeatureDeconvolution& source); | ^~~~~~~~ [ 60%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DECHARGING/ILPDCWrapper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DECHARGING/ILPDCWrapper.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/DECHARGING/ILPDCWrapper.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/DECHARGING/ILPDCWrapper.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DECHARGING/ILPDCWrapper.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DECHARGING/ILPDCWrapper.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Map.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DECHARGING/ILPDCWrapper.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DECHARGING/ILPDCWrapper.cpp:34: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 60%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/AccurateMassSearchEngine.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/AccurateMassSearchEngine.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/AccurateMassSearchEngine.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/AccurateMassSearchEngine.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/AccurateMassSearchEngine.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MassTrace.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AccurateMassSearchEngine.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/AccurateMassSearchEngine.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MassTrace.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AccurateMassSearchEngine.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AccurateMassSearchEngine.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AccurateMassSearchEngine.h:258:23: note: by 'OpenMS::AccurateMassSearchEngine& OpenMS::AccurateMassSearchEngine::operator=(const OpenMS::AccurateMassSearchEngine&)' 258 | class OPENMS_DLLAPI AccurateMassSearchEngine : | ^~~~~~~~~~~~~~~~~~~~~~~~ [ 60%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/AhoCorasickAmbiguous.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/AhoCorasickAmbiguous.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/AhoCorasickAmbiguous.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/AhoCorasickAmbiguous.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/AhoCorasickAmbiguous.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/AhoCorasickAmbiguous.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h: In instantiation of 'bool seqan::_spawnConsumeChar(const Pattern >&, PatternAuxData&, Spawn&, AAcid) [with TNeedle = StringSet, Alloc<> > >; AAcid = SimpleType]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:913:33: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternAuxData&) [with TFinder = Finder, Alloc<> > >; TNeedle = StringSet, Alloc<> > >]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:1039:27: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:773:24: warning: implicitly-declared 'constexpr seqan::Spawn, seqan::Alloc<> > > >::Spawn(const seqan::Spawn, seqan::Alloc<> > > >&)' is deprecated [-Wdeprecated-copy] 773 | Spawn spawn2 = spawn; // a potential spawn | ^~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:238:14: note: because 'seqan::Spawn, seqan::Alloc<> > > >' has user-provided 'seqan::Spawn& seqan::Spawn::operator=(const seqan::Spawn&) [with TNeedle = seqan::StringSet, seqan::Alloc<> > >]' 238 | Spawn& operator=(const Spawn&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:793:24: warning: implicitly-declared 'constexpr seqan::Spawn, seqan::Alloc<> > > >::Spawn(const seqan::Spawn, seqan::Alloc<> > > >&)' is deprecated [-Wdeprecated-copy] 793 | Spawn spawn2 = spawn; // a potential spawn | ^~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:238:14: note: because 'seqan::Spawn, seqan::Alloc<> > > >' has user-provided 'seqan::Spawn& seqan::Spawn::operator=(const seqan::Spawn&) [with TNeedle = seqan::StringSet, seqan::Alloc<> > >]' 238 | Spawn& operator=(const Spawn&); | ^~~~~~~~ [ 60%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/AScore.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/AScore.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/AScore.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/AScore.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/AScore.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AScore.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/AScore.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AScore.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AScore.h:70:23: note: by 'OpenMS::AScore& OpenMS::AScore::operator=(const OpenMS::AScore&)' 70 | class OPENMS_DLLAPI AScore: public DefaultParamHandler | ^~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/AScore.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h:87:35: note: by 'OpenMS::TheoreticalSpectrumGenerator& OpenMS::TheoreticalSpectrumGenerator::operator=(const OpenMS::TheoreticalSpectrumGenerator&)' 87 | TheoreticalSpectrumGenerator& operator=(const TheoreticalSpectrumGenerator& tsg); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/AScore.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:97:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 97 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:133:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 133 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:171:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 171 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:207:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 207 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:242:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 242 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:278:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 278 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:309:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 309 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:343:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 343 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:395:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 395 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:444:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 444 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:489:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 489 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:527:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 527 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:564:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 564 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:617:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 617 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:663:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 663 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 60%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/BasicProteinInferenceAlgorithm.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/BasicProteinInferenceAlgorithm.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/BasicProteinInferenceAlgorithm.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/BasicProteinInferenceAlgorithm.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/BasicProteinInferenceAlgorithm.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/BasicProteinInferenceAlgorithm.h:36, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/BasicProteinInferenceAlgorithm.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/BasicProteinInferenceAlgorithm.h:58:23: note: by 'OpenMS::BasicProteinInferenceAlgorithm::operator=' 58 | class OPENMS_DLLAPI BasicProteinInferenceAlgorithm : | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/BasicProteinInferenceAlgorithm.cpp:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ID/IdentificationData.h:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:46: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::FilterPeptideEvidences(EvidenceFilter&, std::vector&) [with EvidenceFilter = DigestionFilter]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:485:68: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:726:35: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::DigestionFilter]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 726 | std::not1(filter)); | ~~~~~~~~~^~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasGoodScore]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:830:26: required from 'static void OpenMS::IDFilter::filterHitsByScore(std::vector&, double) [with IdentificationType = OpenMS::ProteinIdentification]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1116:24: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasGoodScore]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasGoodScore]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:830:26: required from 'static void OpenMS::IDFilter::filterHitsByScore(std::vector&, double) [with IdentificationType = OpenMS::PeptideIdentification]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1125:26: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasGoodScore]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasMetaValue]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:571:26: required from 'static void OpenMS::IDFilter::keepMatchingItemsUnroll(IDContainer&, const Predicate&) [with IDContainer = std::vector; Predicate = HasMetaValue]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1184:30: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMetaValue]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasMatchingAccession]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:965:26: required from 'static void OpenMS::IDFilter::keepHitsMatchingProteins(std::vector&, const std::set&) [with IdentificationType = OpenMS::ProteinIdentification]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1332:31: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMatchingAccession]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasMatchingAccession]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:965:26: required from 'static void OpenMS::IDFilter::keepHitsMatchingProteins(std::vector&, const std::set&) [with IdentificationType = OpenMS::PeptideIdentification]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1342:35: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMatchingAccession]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ [ 60%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/BayesianProteinInferenceAlgorithm.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/BayesianProteinInferenceAlgorithm.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/BayesianProteinInferenceAlgorithm.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/BayesianProteinInferenceAlgorithm.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/BayesianProteinInferenceAlgorithm.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ExperimentalDesign.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/BayesianProteinInferenceAlgorithm.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/BayesianProteinInferenceAlgorithm.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/BayesianProteinInferenceAlgorithm.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/BayesianProteinInferenceAlgorithm.h:75:23: note: by 'OpenMS::BayesianProteinInferenceAlgorithm& OpenMS::BayesianProteinInferenceAlgorithm::operator=(const OpenMS::BayesianProteinInferenceAlgorithm&)' 75 | class OPENMS_DLLAPI BayesianProteinInferenceAlgorithm : | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/BayesianProteinInferenceAlgorithm.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/FalseDiscoveryRate.h:183:25: note: by 'OpenMS::FalseDiscoveryRate& OpenMS::FalseDiscoveryRate::operator=(const OpenMS::FalseDiscoveryRate&)' 183 | FalseDiscoveryRate& operator=(const FalseDiscoveryRate&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/BayesianProteinInferenceAlgorithm.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDScoreSwitcherAlgorithm.h:47:23: note: by 'OpenMS::IDScoreSwitcherAlgorithm::operator=' 47 | class OPENMS_DLLAPI IDScoreSwitcherAlgorithm: | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/BayesianProteinInferenceAlgorithm.cpp:45: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::FilterPeptideEvidences(EvidenceFilter&, std::vector&) [with EvidenceFilter = DigestionFilter]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:485:68: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:726:35: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::DigestionFilter]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 726 | std::not1(filter)); | ~~~~~~~~~^~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasGoodScore]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:830:26: required from 'static void OpenMS::IDFilter::filterHitsByScore(std::vector&, double) [with IdentificationType = OpenMS::ProteinIdentification]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1116:24: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasGoodScore]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasGoodScore]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:830:26: required from 'static void OpenMS::IDFilter::filterHitsByScore(std::vector&, double) [with IdentificationType = OpenMS::PeptideIdentification]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1125:26: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasGoodScore]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasMetaValue]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:571:26: required from 'static void OpenMS::IDFilter::keepMatchingItemsUnroll(IDContainer&, const Predicate&) [with IDContainer = std::vector; Predicate = HasMetaValue]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1184:30: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMetaValue]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasMatchingAccession]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:965:26: required from 'static void OpenMS::IDFilter::keepHitsMatchingProteins(std::vector&, const std::set&) [with IdentificationType = OpenMS::ProteinIdentification]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1332:31: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMatchingAccession]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasMatchingAccession]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:965:26: required from 'static void OpenMS::IDFilter::keepHitsMatchingProteins(std::vector&, const std::set&) [with IdentificationType = OpenMS::PeptideIdentification]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1342:35: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMatchingAccession]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ [ 60%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithm.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithm.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithm.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithm.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithm.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithm.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithm.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithm.h:146:27: note: by 'OpenMS::ConsensusIDAlgorithm& OpenMS::ConsensusIDAlgorithm::operator=(const OpenMS::ConsensusIDAlgorithm&)' 146 | ConsensusIDAlgorithm& operator=(const ConsensusIDAlgorithm&); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithm.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ID/IdentificationData.h:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:46: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::FilterPeptideEvidences(EvidenceFilter&, std::vector&) [with EvidenceFilter = DigestionFilter]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:485:68: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:726:35: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::DigestionFilter]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 726 | std::not1(filter)); | ~~~~~~~~~^~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasGoodScore]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:830:26: required from 'static void OpenMS::IDFilter::filterHitsByScore(std::vector&, double) [with IdentificationType = OpenMS::ProteinIdentification]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1116:24: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasGoodScore]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasGoodScore]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:830:26: required from 'static void OpenMS::IDFilter::filterHitsByScore(std::vector&, double) [with IdentificationType = OpenMS::PeptideIdentification]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1125:26: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasGoodScore]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasMetaValue]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:571:26: required from 'static void OpenMS::IDFilter::keepMatchingItemsUnroll(IDContainer&, const Predicate&) [with IDContainer = std::vector; Predicate = HasMetaValue]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1184:30: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMetaValue]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasMatchingAccession]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:965:26: required from 'static void OpenMS::IDFilter::keepHitsMatchingProteins(std::vector&, const std::set&) [with IdentificationType = OpenMS::ProteinIdentification]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1332:31: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMatchingAccession]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasMatchingAccession]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:965:26: required from 'static void OpenMS::IDFilter::keepHitsMatchingProteins(std::vector&, const std::set&) [with IdentificationType = OpenMS::PeptideIdentification]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1342:35: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMatchingAccession]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ [ 60%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmAverage.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmAverage.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmAverage.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmAverage.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithmAverage.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithm.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmIdentity.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmAverage.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithmAverage.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithm.h:146:27: note: by 'OpenMS::ConsensusIDAlgorithm& OpenMS::ConsensusIDAlgorithm::operator=(const OpenMS::ConsensusIDAlgorithm&)' 146 | ConsensusIDAlgorithm& operator=(const ConsensusIDAlgorithm&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmIdentity.h:86:35: note: by 'OpenMS::ConsensusIDAlgorithmIdentity& OpenMS::ConsensusIDAlgorithmIdentity::operator=(const OpenMS::ConsensusIDAlgorithmIdentity&)' 86 | ConsensusIDAlgorithmIdentity& operator=(const ConsensusIDAlgorithmIdentity&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmAverage.h:60:34: note: by 'OpenMS::ConsensusIDAlgorithmAverage& OpenMS::ConsensusIDAlgorithmAverage::operator=(const OpenMS::ConsensusIDAlgorithmAverage&)' 60 | ConsensusIDAlgorithmAverage& operator=(const ConsensusIDAlgorithmAverage&); | ^~~~~~~~ [ 60%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmBest.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmBest.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmBest.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmBest.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithmBest.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithm.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmIdentity.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmBest.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithmBest.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithm.h:146:27: note: by 'OpenMS::ConsensusIDAlgorithm& OpenMS::ConsensusIDAlgorithm::operator=(const OpenMS::ConsensusIDAlgorithm&)' 146 | ConsensusIDAlgorithm& operator=(const ConsensusIDAlgorithm&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmIdentity.h:86:35: note: by 'OpenMS::ConsensusIDAlgorithmIdentity& OpenMS::ConsensusIDAlgorithmIdentity::operator=(const OpenMS::ConsensusIDAlgorithmIdentity&)' 86 | ConsensusIDAlgorithmIdentity& operator=(const ConsensusIDAlgorithmIdentity&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmBest.h:60:31: note: by 'OpenMS::ConsensusIDAlgorithmBest& OpenMS::ConsensusIDAlgorithmBest::operator=(const OpenMS::ConsensusIDAlgorithmBest&)' 60 | ConsensusIDAlgorithmBest& operator=(const ConsensusIDAlgorithmBest&); | ^~~~~~~~ [ 60%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmIdentity.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmIdentity.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmIdentity.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmIdentity.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithmIdentity.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithm.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmIdentity.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithmIdentity.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithm.h:146:27: note: by 'OpenMS::ConsensusIDAlgorithm& OpenMS::ConsensusIDAlgorithm::operator=(const OpenMS::ConsensusIDAlgorithm&)' 146 | ConsensusIDAlgorithm& operator=(const ConsensusIDAlgorithm&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmIdentity.h:86:35: note: by 'OpenMS::ConsensusIDAlgorithmIdentity& OpenMS::ConsensusIDAlgorithmIdentity::operator=(const OpenMS::ConsensusIDAlgorithmIdentity&)' 86 | ConsensusIDAlgorithmIdentity& operator=(const ConsensusIDAlgorithmIdentity&); | ^~~~~~~~ [ 60%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmPEPIons.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmPEPIons.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmPEPIons.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmPEPIons.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithmPEPIons.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithm.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmSimilarity.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmPEPIons.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithmPEPIons.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithm.h:146:27: note: by 'OpenMS::ConsensusIDAlgorithm& OpenMS::ConsensusIDAlgorithm::operator=(const OpenMS::ConsensusIDAlgorithm&)' 146 | ConsensusIDAlgorithm& operator=(const ConsensusIDAlgorithm&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmSimilarity.h:81:37: note: by 'OpenMS::ConsensusIDAlgorithmSimilarity& OpenMS::ConsensusIDAlgorithmSimilarity::operator=(const OpenMS::ConsensusIDAlgorithmSimilarity&)' 81 | ConsensusIDAlgorithmSimilarity& operator=(const ConsensusIDAlgorithmSimilarity&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmPEPIons.h:66:34: note: by 'OpenMS::ConsensusIDAlgorithmPEPIons& OpenMS::ConsensusIDAlgorithmPEPIons::operator=(const OpenMS::ConsensusIDAlgorithmPEPIons&)' 66 | ConsensusIDAlgorithmPEPIons& operator=(const ConsensusIDAlgorithmPEPIons&); | ^~~~~~~~ [ 60%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmPEPMatrix.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmPEPMatrix.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmPEPMatrix.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmPEPMatrix.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithmPEPMatrix.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithm.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmSimilarity.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmPEPMatrix.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithmPEPMatrix.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithm.h:146:27: note: by 'OpenMS::ConsensusIDAlgorithm& OpenMS::ConsensusIDAlgorithm::operator=(const OpenMS::ConsensusIDAlgorithm&)' 146 | ConsensusIDAlgorithm& operator=(const ConsensusIDAlgorithm&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmSimilarity.h:81:37: note: by 'OpenMS::ConsensusIDAlgorithmSimilarity& OpenMS::ConsensusIDAlgorithmSimilarity::operator=(const OpenMS::ConsensusIDAlgorithmSimilarity&)' 81 | ConsensusIDAlgorithmSimilarity& operator=(const ConsensusIDAlgorithmSimilarity&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmPEPMatrix.h:181:36: note: by 'OpenMS::ConsensusIDAlgorithmPEPMatrix& OpenMS::ConsensusIDAlgorithmPEPMatrix::operator=(const OpenMS::ConsensusIDAlgorithmPEPMatrix&)' 181 | ConsensusIDAlgorithmPEPMatrix& operator=(const ConsensusIDAlgorithmPEPMatrix&); | ^~~~~~~~ [ 60%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmRanks.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmRanks.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmRanks.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmRanks.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithmRanks.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithm.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmIdentity.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmRanks.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithmRanks.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithm.h:146:27: note: by 'OpenMS::ConsensusIDAlgorithm& OpenMS::ConsensusIDAlgorithm::operator=(const OpenMS::ConsensusIDAlgorithm&)' 146 | ConsensusIDAlgorithm& operator=(const ConsensusIDAlgorithm&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmIdentity.h:86:35: note: by 'OpenMS::ConsensusIDAlgorithmIdentity& OpenMS::ConsensusIDAlgorithmIdentity::operator=(const OpenMS::ConsensusIDAlgorithmIdentity&)' 86 | ConsensusIDAlgorithmIdentity& operator=(const ConsensusIDAlgorithmIdentity&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmRanks.h:66:32: note: by 'OpenMS::ConsensusIDAlgorithmRanks& OpenMS::ConsensusIDAlgorithmRanks::operator=(const OpenMS::ConsensusIDAlgorithmRanks&)' 66 | ConsensusIDAlgorithmRanks& operator=(const ConsensusIDAlgorithmRanks&); | ^~~~~~~~ [ 62%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmSimilarity.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmSimilarity.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmSimilarity.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmSimilarity.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithmSimilarity.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithm.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmSimilarity.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithmSimilarity.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithm.h:146:27: note: by 'OpenMS::ConsensusIDAlgorithm& OpenMS::ConsensusIDAlgorithm::operator=(const OpenMS::ConsensusIDAlgorithm&)' 146 | ConsensusIDAlgorithm& operator=(const ConsensusIDAlgorithm&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmSimilarity.h:81:37: note: by 'OpenMS::ConsensusIDAlgorithmSimilarity& OpenMS::ConsensusIDAlgorithmSimilarity::operator=(const OpenMS::ConsensusIDAlgorithmSimilarity&)' 81 | ConsensusIDAlgorithmSimilarity& operator=(const ConsensusIDAlgorithmSimilarity&); | ^~~~~~~~ [ 62%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmWorst.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmWorst.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmWorst.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmWorst.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithmWorst.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithm.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmIdentity.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmWorst.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/ConsensusIDAlgorithmWorst.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithm.h:146:27: note: by 'OpenMS::ConsensusIDAlgorithm& OpenMS::ConsensusIDAlgorithm::operator=(const OpenMS::ConsensusIDAlgorithm&)' 146 | ConsensusIDAlgorithm& operator=(const ConsensusIDAlgorithm&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmIdentity.h:86:35: note: by 'OpenMS::ConsensusIDAlgorithmIdentity& OpenMS::ConsensusIDAlgorithmIdentity::operator=(const OpenMS::ConsensusIDAlgorithmIdentity&)' 86 | ConsensusIDAlgorithmIdentity& operator=(const ConsensusIDAlgorithmIdentity&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmWorst.h:60:32: note: by 'OpenMS::ConsensusIDAlgorithmWorst& OpenMS::ConsensusIDAlgorithmWorst::operator=(const OpenMS::ConsensusIDAlgorithmWorst&)' 60 | ConsensusIDAlgorithmWorst& operator=(const ConsensusIDAlgorithmWorst&); | ^~~~~~~~ [ 62%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusMapMergerAlgorithm.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusMapMergerAlgorithm.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusMapMergerAlgorithm.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusMapMergerAlgorithm.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/ConsensusMapMergerAlgorithm.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusMapMergerAlgorithm.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/ConsensusMapMergerAlgorithm.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusMapMergerAlgorithm.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ConsensusMapMergerAlgorithm.h:63:23: note: by 'OpenMS::ConsensusMapMergerAlgorithm::operator=' 63 | class OPENMS_DLLAPI ConsensusMapMergerAlgorithm: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 62%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/FalseDiscoveryRate.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/FalseDiscoveryRate.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/FalseDiscoveryRate.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/FalseDiscoveryRate.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/FalseDiscoveryRate.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ID/IdentificationData.h:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/FalseDiscoveryRate.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/FalseDiscoveryRate.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/FalseDiscoveryRate.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/FalseDiscoveryRate.h:183:25: note: by 'OpenMS::FalseDiscoveryRate& OpenMS::FalseDiscoveryRate::operator=(const OpenMS::FalseDiscoveryRate&)' 183 | FalseDiscoveryRate& operator=(const FalseDiscoveryRate&); | ^~~~~~~~ [ 62%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/FIAMSDataProcessor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/FIAMSDataProcessor.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/FIAMSDataProcessor.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/FIAMSDataProcessor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/FIAMSDataProcessor.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/SavitzkyGolayFilter.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/FIAMSDataProcessor.h:36, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/FIAMSDataProcessor.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/SavitzkyGolayFilter.h:37: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/SavitzkyGolayFilter.h:101:23: note: by 'OpenMS::SavitzkyGolayFilter& OpenMS::SavitzkyGolayFilter::operator=(const OpenMS::SavitzkyGolayFilter&)' 101 | class OPENMS_DLLAPI SavitzkyGolayFilter : | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/FIAMSDataProcessor.h:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:73:23: note: by 'OpenMS::PeakPickerHiRes& OpenMS::PeakPickerHiRes::operator=(const OpenMS::PeakPickerHiRes&)' 73 | class OPENMS_DLLAPI PeakPickerHiRes : | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/FIAMSDataProcessor.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/FIAMSDataProcessor.h:73:25: note: by 'OpenMS::FIAMSDataProcessor& OpenMS::FIAMSDataProcessor::operator=(const OpenMS::FIAMSDataProcessor&)' 73 | FIAMSDataProcessor& operator=(const FIAMSDataProcessor& fdp) = default; | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/FIAMSDataProcessor.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AccurateMassSearchEngine.h:258:23: note: by 'OpenMS::AccurateMassSearchEngine& OpenMS::AccurateMassSearchEngine::operator=(const OpenMS::AccurateMassSearchEngine&)' 258 | class OPENMS_DLLAPI AccurateMassSearchEngine : | ^~~~~~~~~~~~~~~~~~~~~~~~ [ 62%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/FIAMSScheduler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/FIAMSScheduler.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/FIAMSScheduler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/FIAMSScheduler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/FIAMSScheduler.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/SavitzkyGolayFilter.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/FIAMSDataProcessor.h:36, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/FIAMSScheduler.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/SavitzkyGolayFilter.h:37: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/SavitzkyGolayFilter.h:101:23: note: by 'OpenMS::SavitzkyGolayFilter& OpenMS::SavitzkyGolayFilter::operator=(const OpenMS::SavitzkyGolayFilter&)' 101 | class OPENMS_DLLAPI SavitzkyGolayFilter : | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/FIAMSDataProcessor.h:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:73:23: note: by 'OpenMS::PeakPickerHiRes& OpenMS::PeakPickerHiRes::operator=(const OpenMS::PeakPickerHiRes&)' 73 | class OPENMS_DLLAPI PeakPickerHiRes : | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/FIAMSDataProcessor.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/FIAMSDataProcessor.h:73:25: note: by 'OpenMS::FIAMSDataProcessor& OpenMS::FIAMSDataProcessor::operator=(const OpenMS::FIAMSDataProcessor&)' 73 | FIAMSDataProcessor& operator=(const FIAMSDataProcessor& fdp) = default; | ^~~~~~~~ [ 62%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/HiddenMarkovModel.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/HiddenMarkovModel.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/HiddenMarkovModel.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/HiddenMarkovModel.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/HiddenMarkovModel.cpp [ 62%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDBoostGraph.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDBoostGraph.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDBoostGraph.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDBoostGraph.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/IDBoostGraph.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ExperimentalDesign.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDBoostGraph.h:44, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/IDBoostGraph.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/stdexcept:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src/Evergreen/evergreen.hpp:13, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/MessagePasserFactory.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDBoostGraph.h:40: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/specfun.h:43, from /usr/include/c++/13/cmath:3699, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/MessagePasserFactory.h:37: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/FalseDiscoveryRate.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/IDBoostGraph.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/FalseDiscoveryRate.h:183:25: note: by 'OpenMS::FalseDiscoveryRate& OpenMS::FalseDiscoveryRate::operator=(const OpenMS::FalseDiscoveryRate&)' 183 | FalseDiscoveryRate& operator=(const FalseDiscoveryRate&); | ^~~~~~~~ [ 62%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDConflictResolverAlgorithm.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDConflictResolverAlgorithm.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDConflictResolverAlgorithm.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDConflictResolverAlgorithm.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/IDConflictResolverAlgorithm.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDConflictResolverAlgorithm.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/IDConflictResolverAlgorithm.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdGenerator.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdInterface.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 62%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDMapper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDMapper.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDMapper.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDMapper.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/IDMapper.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDMapper.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/IDMapper.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDMapper.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDMapper.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDMapper.h:46: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDMapper.h:79:15: note: by 'OpenMS::IDMapper& OpenMS::IDMapper::operator=(const OpenMS::IDMapper&)' 79 | IDMapper& operator=(const IDMapper& rhs); | ^~~~~~~~ [ 62%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDMergerAlgorithm.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDMergerAlgorithm.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDMergerAlgorithm.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDMergerAlgorithm.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/IDMergerAlgorithm.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDMergerAlgorithm.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/IDMergerAlgorithm.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDMergerAlgorithm.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDMergerAlgorithm.h:61:23: note: by 'OpenMS::IDMergerAlgorithm::operator=' 61 | class OPENMS_DLLAPI IDMergerAlgorithm: | ^~~~~~~~~~~~~~~~~ [ 62%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDRipper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDRipper.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDRipper.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDRipper.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/IDRipper.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDRipper.h:36, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/IDRipper.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDRipper.h:83:16: note: by 'OpenMS::IDRipper& OpenMS::IDRipper::operator=(const OpenMS::IDRipper&)' 83 | IDRipper & operator=(const IDRipper & rhs); | ^~~~~~~~ [ 62%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDDecoyProbability.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDDecoyProbability.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDDecoyProbability.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDDecoyProbability.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/IDDecoyProbability.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDDecoyProbability.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/IDDecoyProbability.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDDecoyProbability.h:72:26: note: by 'OpenMS::IDDecoyProbability& OpenMS::IDDecoyProbability::operator=(const OpenMS::IDDecoyProbability&)' 72 | IDDecoyProbability & operator=(const IDDecoyProbability & rhs); | ^~~~~~~~ [ 62%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDScoreGetterSetter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDScoreGetterSetter.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDScoreGetterSetter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDScoreGetterSetter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/IDScoreGetterSetter.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ID/IdentificationData.h:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDScoreGetterSetter.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/IDScoreGetterSetter.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDScoreGetterSetter.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 64%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDScoreSwitcherAlgorithm.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDScoreSwitcherAlgorithm.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDScoreSwitcherAlgorithm.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDScoreSwitcherAlgorithm.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/IDScoreSwitcherAlgorithm.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDScoreSwitcherAlgorithm.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/IDScoreSwitcherAlgorithm.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDScoreSwitcherAlgorithm.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDScoreSwitcherAlgorithm.h:47:23: note: by 'OpenMS::IDScoreSwitcherAlgorithm::operator=' 47 | class OPENMS_DLLAPI IDScoreSwitcherAlgorithm: | ^~~~~~~~~~~~~~~~~~~~~~~~ [ 64%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/MessagePasserFactory.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/MessagePasserFactory.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/MessagePasserFactory.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/MessagePasserFactory.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/MessagePasserFactory.cpp [ 64%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/MetaboliteSpectralMatching.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/MetaboliteSpectralMatching.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/MetaboliteSpectralMatching.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/MetaboliteSpectralMatching.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/MetaboliteSpectralMatching.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MassTrace.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/MetaboliteSpectralMatching.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/MetaboliteSpectralMatching.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MassTrace.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/MetaboliteSpectralMatching.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/MetaboliteSpectralMatching.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/MetaboliteSpectralMatching.h:150:23: note: by 'OpenMS::MetaboliteSpectralMatching& OpenMS::MetaboliteSpectralMatching::operator=(const OpenMS::MetaboliteSpectralMatching&)' 150 | class OPENMS_DLLAPI MetaboliteSpectralMatching : | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/CLUSTERING/ClusterHierarchical.h:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SpectraMerger.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/MetaboliteSpectralMatching.cpp:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:68:34: note: by 'OpenMS::PeakSpectrumCompareFunctor& OpenMS::PeakSpectrumCompareFunctor::operator=(const OpenMS::PeakSpectrumCompareFunctor&)' 68 | PeakSpectrumCompareFunctor & operator=(const PeakSpectrumCompareFunctor & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/CLUSTERING/ClusterHierarchical.h:49: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.h:73:35: note: by 'OpenMS::BinnedSpectrumCompareFunctor& OpenMS::BinnedSpectrumCompareFunctor::operator=(const OpenMS::BinnedSpectrumCompareFunctor&)' 73 | BinnedSpectrumCompareFunctor& operator=(const BinnedSpectrumCompareFunctor& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SpectraMerger.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignment.h:84:25: note: by 'OpenMS::SpectrumAlignment& OpenMS::SpectrumAlignment::operator=(const OpenMS::SpectrumAlignment&)' 84 | SpectrumAlignment & operator=(const SpectrumAlignment & source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SpectraMerger.h:45: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:97:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 97 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:133:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 133 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:171:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 171 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:207:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 207 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:242:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 242 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:278:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 278 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:309:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 309 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:343:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 343 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:395:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 395 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:444:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 444 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:489:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 489 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:527:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 527 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:564:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 564 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:617:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 617 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:663:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 663 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SpectraMerger.h:75:11: note: by 'OpenMS::SpectraMerger::SpectraDistance_::operator=' 75 | class SpectraDistance_ : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SpectraMerger.h:146:20: note: by 'OpenMS::SpectraMerger& OpenMS::SpectraMerger::operator=(const OpenMS::SpectraMerger&)' 146 | SpectraMerger& operator=(const SpectraMerger& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/MetaboliteSpectralMatching.cpp:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/WindowMower.h:69:18: note: by 'OpenMS::WindowMower& OpenMS::WindowMower::operator=(const OpenMS::WindowMower&)' 69 | WindowMower& operator=(const WindowMower& source); | ^~~~~~~~ [ 64%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/PeptideProteinResolution.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/PeptideProteinResolution.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/PeptideProteinResolution.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/PeptideProteinResolution.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/PeptideProteinResolution.cpp [ 64%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/PrecursorPurity.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/PrecursorPurity.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/PrecursorPurity.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/PrecursorPurity.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/PrecursorPurity.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/PrecursorPurity.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/PrecursorPurity.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 64%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ProtonDistributionModel.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ProtonDistributionModel.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ProtonDistributionModel.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ProtonDistributionModel.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/ProtonDistributionModel.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ProtonDistributionModel.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/ProtonDistributionModel.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/ProtonDistributionModel.h:89:31: note: by 'OpenMS::ProtonDistributionModel& OpenMS::ProtonDistributionModel::operator=(const OpenMS::ProtonDistributionModel&)' 89 | ProtonDistributionModel & operator=(const ProtonDistributionModel & pdm); | ^~~~~~~~ [ 64%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/PeptideIndexing.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/PeptideIndexing.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/PeptideIndexing.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/PeptideIndexing.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/PeptideIndexing.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/PeptideIndexing.h:43, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/PeptideIndexing.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/PeptideIndexing.h:126:22: note: by 'OpenMS::PeptideIndexing& OpenMS::PeptideIndexing::operator=(const OpenMS::PeptideIndexing&)' 126 | class OPENMS_DLLAPI PeptideIndexing : | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/PeptideIndexing.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h: In instantiation of 'bool seqan::_spawnConsumeChar(const Pattern >&, PatternAuxData&, Spawn&, AAcid) [with TNeedle = StringSet, Alloc<> > >; AAcid = SimpleType]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:913:33: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternAuxData&) [with TFinder = Finder, Alloc<> > >; TNeedle = StringSet, Alloc<> > >]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:1039:27: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:773:24: warning: implicitly-declared 'constexpr seqan::Spawn, seqan::Alloc<> > > >::Spawn(const seqan::Spawn, seqan::Alloc<> > > >&)' is deprecated [-Wdeprecated-copy] 773 | Spawn spawn2 = spawn; // a potential spawn | ^~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:238:14: note: because 'seqan::Spawn, seqan::Alloc<> > > >' has user-provided 'seqan::Spawn& seqan::Spawn::operator=(const seqan::Spawn&) [with TNeedle = seqan::StringSet, seqan::Alloc<> > >]' 238 | Spawn& operator=(const Spawn&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:793:24: warning: implicitly-declared 'constexpr seqan::Spawn, seqan::Alloc<> > > >::Spawn(const seqan::Spawn, seqan::Alloc<> > > >&)' is deprecated [-Wdeprecated-copy] 793 | Spawn spawn2 = spawn; // a potential spawn | ^~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:238:14: note: because 'seqan::Spawn, seqan::Alloc<> > > >' has user-provided 'seqan::Spawn& seqan::Spawn::operator=(const seqan::Spawn&) [with TNeedle = seqan::StringSet, seqan::Alloc<> > >]' 238 | Spawn& operator=(const Spawn&); | ^~~~~~~~ [ 64%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/PercolatorFeatureSetHelper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/PercolatorFeatureSetHelper.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/PercolatorFeatureSetHelper.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/PercolatorFeatureSetHelper.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/PercolatorFeatureSetHelper.cpp [ 64%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/SimpleSearchEngineAlgorithm.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/SimpleSearchEngineAlgorithm.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/SimpleSearchEngineAlgorithm.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/SimpleSearchEngineAlgorithm.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/SimpleSearchEngineAlgorithm.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/SimpleSearchEngineAlgorithm.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/SimpleSearchEngineAlgorithm.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/stl_tree.h:63, from /usr/include/c++/13/map:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/ProgressLogger.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/SimpleSearchEngineAlgorithm.h:35: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/SimpleSearchEngineAlgorithm.h:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/SimpleSearchEngineAlgorithm.h:46:21: note: by 'OpenMS::SimpleSearchEngineAlgorithm::operator=' 46 | class OPENMS_DLLAPI SimpleSearchEngineAlgorithm : | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/SimpleSearchEngineAlgorithm.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/PeptideIndexing.h:126:22: note: by 'OpenMS::PeptideIndexing& OpenMS::PeptideIndexing::operator=(const OpenMS::PeptideIndexing&)' 126 | class OPENMS_DLLAPI PeptideIndexing : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/SimpleSearchEngineAlgorithm.cpp:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h:87:35: note: by 'OpenMS::TheoreticalSpectrumGenerator& OpenMS::TheoreticalSpectrumGenerator::operator=(const OpenMS::TheoreticalSpectrumGenerator&)' 87 | TheoreticalSpectrumGenerator& operator=(const TheoreticalSpectrumGenerator& tsg); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ID/IdentificationData.h:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:46, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/SimpleSearchEngineAlgorithm.cpp:54: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/SimpleSearchEngineAlgorithm.cpp:55: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/ThresholdMower.h:66:22: note: by 'OpenMS::ThresholdMower& OpenMS::ThresholdMower::operator=(const OpenMS::ThresholdMower&)' 66 | ThresholdMower & operator=(const ThresholdMower & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/SimpleSearchEngineAlgorithm.cpp:56: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/NLargest.h:72:16: note: by 'OpenMS::NLargest& OpenMS::NLargest::operator=(const OpenMS::NLargest&)' 72 | NLargest & operator=(const NLargest & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/SimpleSearchEngineAlgorithm.cpp:57: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/WindowMower.h:69:18: note: by 'OpenMS::WindowMower& OpenMS::WindowMower::operator=(const OpenMS::WindowMower&)' 69 | WindowMower& operator=(const WindowMower& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/SimpleSearchEngineAlgorithm.cpp:58: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/Normalizer.h:70:18: note: by 'OpenMS::Normalizer& OpenMS::Normalizer::operator=(const OpenMS::Normalizer&)' 70 | Normalizer & operator=(const Normalizer & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/SimpleSearchEngineAlgorithm.cpp:70: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignment.h:84:25: note: by 'OpenMS::SpectrumAlignment& OpenMS::SpectrumAlignment::operator=(const OpenMS::SpectrumAlignment&)' 84 | SpectrumAlignment & operator=(const SpectrumAlignment & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/SimpleSearchEngineAlgorithm.cpp: In member function 'OpenMS::SimpleSearchEngineAlgorithm::ExitCodes OpenMS::SimpleSearchEngineAlgorithm::search(const OpenMS::String&, const OpenMS::String&, std::vector&, std::vector&) const': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/SimpleSearchEngineAlgorithm.cpp:411:22: warning: implicitly-declared 'OpenMS::PeakFileOptions& OpenMS::PeakFileOptions::operator=(const OpenMS::PeakFileOptions&)' is deprecated [-Wdeprecated-copy] 411 | f.getOptions() = options; | ^~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzMLFile.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/SimpleSearchEngineAlgorithm.cpp:60: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/OPTIONS/PeakFileOptions.h:53:5: note: because 'OpenMS::PeakFileOptions' has user-provided 'OpenMS::PeakFileOptions::PeakFileOptions(const OpenMS::PeakFileOptions&)' 53 | PeakFileOptions(const PeakFileOptions &); | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/SimpleSearchEngineAlgorithm.cpp:495:26: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 495 | std::random_shuffle(fasta_db.begin(), fasta_db.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/SimpleSearchEngineAlgorithm.cpp:602:27: warning: implicitly-declared 'constexpr OpenMS::StringView& OpenMS::StringView::operator=(const OpenMS::StringView&)' is deprecated [-Wdeprecated-copy] 602 | ah.sequence = c; | ^ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:504:5: note: because 'OpenMS::StringView' has user-provided 'OpenMS::StringView::StringView(const OpenMS::StringView&)' 504 | StringView(const StringView& s) : begin_(s.begin_), size_(s.size_) | ^~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::FilterPeptideEvidences(EvidenceFilter&, std::vector&) [with EvidenceFilter = DigestionFilter]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:485:68: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:726:35: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::DigestionFilter]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 726 | std::not1(filter)); | ~~~~~~~~~^~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/PeptideIndexing.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h: In instantiation of 'bool seqan::_spawnConsumeChar(const Pattern >&, PatternAuxData&, Spawn&, AAcid) [with TNeedle = StringSet, Alloc<> > >; AAcid = SimpleType]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:913:33: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternAuxData&) [with TFinder = Finder, Alloc<> > >; TNeedle = StringSet, Alloc<> > >]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:1039:27: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:773:24: warning: implicitly-declared 'constexpr seqan::Spawn, seqan::Alloc<> > > >::Spawn(const seqan::Spawn, seqan::Alloc<> > > >&)' is deprecated [-Wdeprecated-copy] 773 | Spawn spawn2 = spawn; // a potential spawn | ^~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:238:14: note: because 'seqan::Spawn, seqan::Alloc<> > > >' has user-provided 'seqan::Spawn& seqan::Spawn::operator=(const seqan::Spawn&) [with TNeedle = seqan::StringSet, seqan::Alloc<> > >]' 238 | Spawn& operator=(const Spawn&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:793:24: warning: implicitly-declared 'constexpr seqan::Spawn, seqan::Alloc<> > > >::Spawn(const seqan::Spawn, seqan::Alloc<> > > >&)' is deprecated [-Wdeprecated-copy] 793 | Spawn spawn2 = spawn; // a potential spawn | ^~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:238:14: note: because 'seqan::Spawn, seqan::Alloc<> > > >' has user-provided 'seqan::Spawn& seqan::Spawn::operator=(const seqan::Spawn&) [with TNeedle = seqan::StringSet, seqan::Alloc<> > >]' 238 | Spawn& operator=(const Spawn&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasGoodScore]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:830:26: required from 'static void OpenMS::IDFilter::filterHitsByScore(std::vector&, double) [with IdentificationType = OpenMS::ProteinIdentification]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1116:24: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasGoodScore]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasGoodScore]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:830:26: required from 'static void OpenMS::IDFilter::filterHitsByScore(std::vector&, double) [with IdentificationType = OpenMS::PeptideIdentification]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1125:26: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasGoodScore]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasMetaValue]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:571:26: required from 'static void OpenMS::IDFilter::keepMatchingItemsUnroll(IDContainer&, const Predicate&) [with IDContainer = std::vector; Predicate = HasMetaValue]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1184:30: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMetaValue]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasMatchingAccession]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:965:26: required from 'static void OpenMS::IDFilter::keepHitsMatchingProteins(std::vector&, const std::set&) [with IdentificationType = OpenMS::ProteinIdentification]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1332:31: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMatchingAccession]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasMatchingAccession]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:965:26: required from 'static void OpenMS::IDFilter::keepHitsMatchingProteins(std::vector&, const std::set&) [with IdentificationType = OpenMS::PeptideIdentification]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1342:35: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMatchingAccession]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/SimpleSearchEngineAlgorithm.h: In instantiation of 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/13/bits/stl_algo.h:1638:19: required from 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]' /usr/include/c++/13/bits/stl_algo.h:1910:25: required from 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]' /usr/include/c++/13/bits/stl_algo.h:4751:26: required from 'void std::partial_sort(_RAIter, _RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(const OpenMS::SimpleSearchEngineAlgorithm::AnnotatedHit_&, const OpenMS::SimpleSearchEngineAlgorithm::AnnotatedHit_&)]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/SimpleSearchEngineAlgorithm.cpp:258:24: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/SimpleSearchEngineAlgorithm.h:72:12: warning: implicitly-declared 'constexpr OpenMS::StringView& OpenMS::StringView::operator=(const OpenMS::StringView&)' is deprecated [-Wdeprecated-copy] 72 | struct AnnotatedHit_ | ^~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:504:5: note: because 'OpenMS::StringView' has user-provided 'OpenMS::StringView::StringView(const OpenMS::StringView&)' 504 | StringView(const StringView& s) : begin_(s.begin_), size_(s.size_) | ^~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h:263:17: note: synthesized method 'OpenMS::SimpleSearchEngineAlgorithm::AnnotatedHit_& OpenMS::SimpleSearchEngineAlgorithm::AnnotatedHit_::operator=(OpenMS::SimpleSearchEngineAlgorithm::AnnotatedHit_&&)' first required here 263 | *__result = _GLIBCXX_MOVE(*__first); | ^ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/basic_allocator.h:53, from /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic.h:74, from /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence.h:51, from /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/index.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/SeqanIncludeWrapper.h:44, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:38: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = long unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::_reportHit(TFinder&, const Pattern >&, PatternAuxData&) [with TFinder = Finder, Alloc<> > >; TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:570:11: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/new_allocator.h:34, from /usr/include/x86_64-linux-gnu/c++/13/bits/c++allocator.h:33, from /usr/include/c++/13/bits/allocator.h:46, from /usr/include/c++/13/bits/stl_tree.h:64: /usr/include/c++/13/new: In function 'void seqan::_reportHit(TFinder&, const Pattern >&, PatternAuxData&) [with TFinder = Finder, Alloc<> > >; TNeedle = StringSet, Alloc<> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_automaton.h:398:33: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_automaton.h:398:33, inlined from 'void seqan::_addStringToTrie(Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeyword = String, Alloc<> >; TPos = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_trie.h:98:41, inlined from 'void seqan::createTrie(Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeywords = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_trie.h:166:46, inlined from 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:422:15: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::EdgeDescriptor > >::Type seqan::addEdge(Graph >&, TVertexDescriptor, TVertexDescriptor, TLabel) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TVertexDescriptor = unsigned int; TLabel = SimpleType]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_automaton.h:436:11, inlined from 'void seqan::_addStringToTrie(Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeyword = String, Alloc<> >; TPos = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_trie.h:101:10, inlined from 'void seqan::createTrie(Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeywords = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_trie.h:166:46, inlined from 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:422:15: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::EdgeDescriptor > >::Type seqan::addEdge(Graph >&, TVertexDescriptor, TVertexDescriptor, TLabel) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TVertexDescriptor = unsigned int; TLabel = SimpleType]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_automaton.h:436:11, inlined from 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:526:18: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const unsigned int; _Up = unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const unsigned int*; _OI = unsigned int*]' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const unsigned int*; _OI = unsigned int*]' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const unsigned int*; _OI = unsigned int*]' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const unsigned int*; _OI = unsigned int*]' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = unsigned int*; TSource1 = const unsigned int*; TSource2 = const unsigned int*]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/array_construct_destruct.h:855:16, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = unsigned int*; TSource1 = const unsigned int*; TSource2 = const unsigned int*]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/array_construct_destruct.h:865:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const unsigned int; TValueTarget = unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/array_construct_destruct.h:1398:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const unsigned int; TValueTarget = unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/array_construct_destruct.h:1429:31, inlined from 'static void seqan::AssignString_::assign_(TTarget&, TSource&, typename seqan::Size::Type) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1151:31, inlined from 'void seqan::assign(String&, const TSource&, TSize, Tag) [with TTargetValue = unsigned int; TTargetSpec = Alloc<>; TSource = String >; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1185:42, inlined from 'void seqan::assign(TTarget&, const TSource&, typename Size::Type) [with TTarget = String >; TSource = String >]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/sequence_interface.h:1554:11, inlined from 'seqan::String >::String(const TSource&, TSize) [with TSource = seqan::String >; TSize = long unsigned int; TValue = unsigned int; TSpec = void]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:164:19, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1373:47, inlined from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = long unsigned int; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1421:42, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const unsigned int; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1374:19, inlined from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = long unsigned int; TTargetSpec = Alloc<>; TSource = unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1421:42, inlined from 'void seqan::append(TTarget&, const TSource&) [with TTarget = String >; TSource = unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/sequence_interface.h:1626:11, inlined from 'void seqan::addHits(const Pattern >&, PatternAuxData&, const Spawn&) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:665:15, inlined from 'bool seqan::_consumeChar(const Pattern >&, PatternAuxData&, Spawn&, AAcid) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:739:12, inlined from 'bool seqan::_spawnConsumeChar(const Pattern >&, PatternAuxData&, Spawn&, AAcid) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:795:25, inlined from 'bool seqan::find(TFinder&, const Pattern >&, PatternAuxData&) [with TFinder = Finder, Alloc<> > >; TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:913:33, inlined from 'bool OpenMS::AhoCorasickAmbiguous::findNext(const FuzzyACPattern&)' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:1039:27, inlined from 'void OpenMS::PeptideIndexing::addHits_(OpenMS::AhoCorasickAmbiguous&, const OpenMS::AhoCorasickAmbiguous::FuzzyACPattern&, const OpenMS::AhoCorasickAmbiguous::PeptideDB&, const OpenMS::String&, const OpenMS::String&, OpenMS::SignedSize, OpenMS::Int, FoundProteinFunctor&) const' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/PeptideIndexing.h:908:30, inlined from '_ZN6OpenMS15PeptideIndexing3runINS_10TFI_VectorEEENS0_9ExitCodesERNS_14FASTAContainerIT_EERSt6vectorINS_21ProteinIdentificationESaIS9_EERS8_INS_21PeptideIdentificationESaISD_EE._omp_fn.0' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/PeptideIndexing.h:474:27: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 64%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/SiriusAdapterAlgorithm.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/SiriusAdapterAlgorithm.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/SiriusAdapterAlgorithm.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/SiriusAdapterAlgorithm.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/SiriusAdapterAlgorithm.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureMapping.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/SiriusAdapterAlgorithm.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/SiriusAdapterAlgorithm.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureMapping.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.h:49:21: note: by 'OpenMS::KDTreeFeatureMaps& OpenMS::KDTreeFeatureMaps::operator=(const OpenMS::KDTreeFeatureMaps&)' 49 | class OPENMS_DLLAPI KDTreeFeatureMaps : public DefaultParamHandler | ^~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureMapping.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/SiriusAdapterAlgorithm.h:46:23: note: by 'OpenMS::SiriusAdapterAlgorithm::operator=' 46 | class OPENMS_DLLAPI SiriusAdapterAlgorithm : public DefaultParamHandler | ^~~~~~~~~~~~~~~~~~~~~~ [ 64%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/SiriusMSConverter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/SiriusMSConverter.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/SiriusMSConverter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/SiriusMSConverter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/SiriusMSConverter.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureMapping.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/SiriusMSConverter.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/ID/SiriusMSConverter.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureMapping.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.h:49:21: note: by 'OpenMS::KDTreeFeatureMaps& OpenMS::KDTreeFeatureMaps::operator=(const OpenMS::KDTreeFeatureMaps&)' 49 | class OPENMS_DLLAPI KDTreeFeatureMaps : public DefaultParamHandler | ^~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureMapping.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 64%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/DeNovoIonScoring.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/DeNovoIonScoring.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/DeNovoIonScoring.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/DeNovoIonScoring.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/DeNovoIonScoring.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/DeNovoIonScoring.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/DeNovoIonScoring.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/DeNovoIonScoring.h:118:24: note: by 'OpenMS::DeNovoIonScoring& OpenMS::DeNovoIonScoring::operator=(const OpenMS::DeNovoIonScoring&)' 118 | DeNovoIonScoring & operator=(const DeNovoIonScoring & rhs); | ^~~~~~~~ [ 64%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/DeNovoAlgorithm.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/DeNovoAlgorithm.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/DeNovoAlgorithm.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/DeNovoAlgorithm.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/DeNovoAlgorithm.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/DeNovoAlgorithm.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/DeNovoAlgorithm.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/DeNovoAlgorithm.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/DeNovoIonScoring.h:118:24: note: by 'OpenMS::DeNovoIonScoring& OpenMS::DeNovoIonScoring::operator=(const OpenMS::DeNovoIonScoring&)' 118 | DeNovoIonScoring & operator=(const DeNovoIonScoring & rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/DeNovoAlgorithm.h:70:23: note: by 'OpenMS::DeNovoAlgorithm& OpenMS::DeNovoAlgorithm::operator=(const OpenMS::DeNovoAlgorithm&)' 70 | DeNovoAlgorithm & operator=(const DeNovoAlgorithm & rhs); | ^~~~~~~~ [ 66%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/DeNovoPostScoring.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/DeNovoPostScoring.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/DeNovoPostScoring.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/DeNovoPostScoring.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/DeNovoPostScoring.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/DeNovoPostScoring.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/DeNovoPostScoring.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/DeNovoPostScoring.h:70:25: note: by 'OpenMS::DeNovoPostScoring& OpenMS::DeNovoPostScoring::operator=(const OpenMS::DeNovoPostScoring&)' 70 | DeNovoPostScoring & operator=(const DeNovoPostScoring & rhs); | ^~~~~~~~ [ 66%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/DeNovoIdentification.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/DeNovoIdentification.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/DeNovoIdentification.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/DeNovoIdentification.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/DeNovoIdentification.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/DeNovoIdentification.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/DeNovoIdentification.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/DeNovoIdentification.h:70:28: note: by 'OpenMS::DeNovoIdentification& OpenMS::DeNovoIdentification::operator=(const OpenMS::DeNovoIdentification&)' 70 | DeNovoIdentification & operator=(const DeNovoIdentification & rhs); | ^~~~~~~~ [ 66%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIdentificationBase.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIdentificationBase.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIdentificationBase.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIdentificationBase.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/CompNovoIdentificationBase.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationBase.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/CompNovoIdentificationBase.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/ZhangSimilarityScore.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationBase.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:68:34: note: by 'OpenMS::PeakSpectrumCompareFunctor& OpenMS::PeakSpectrumCompareFunctor::operator=(const OpenMS::PeakSpectrumCompareFunctor&)' 68 | PeakSpectrumCompareFunctor & operator=(const PeakSpectrumCompareFunctor & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/ZhangSimilarityScore.h:74:28: note: by 'OpenMS::ZhangSimilarityScore& OpenMS::ZhangSimilarityScore::operator=(const OpenMS::ZhangSimilarityScore&)' 74 | ZhangSimilarityScore & operator=(const ZhangSimilarityScore & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationBase.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/MassDecompositionAlgorithm.h:107:34: note: by 'OpenMS::MassDecompositionAlgorithm& OpenMS::MassDecompositionAlgorithm::operator=(const OpenMS::MassDecompositionAlgorithm&)' 107 | MassDecompositionAlgorithm & operator=(const MassDecompositionAlgorithm & rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringBase.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationBase.h:45: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/PeptideHit.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/PeptideIdentification.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationBase.h:39: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringBase.h:102:30: note: by 'OpenMS::CompNovoIonScoringBase& OpenMS::CompNovoIonScoringBase::operator=(const OpenMS::CompNovoIonScoringBase&)' 102 | CompNovoIonScoringBase & operator=(const CompNovoIonScoringBase & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationBase.h:77:34: note: by 'OpenMS::CompNovoIdentificationBase& OpenMS::CompNovoIdentificationBase::operator=(const OpenMS::CompNovoIdentificationBase&)' 77 | CompNovoIdentificationBase & operator=(const CompNovoIdentificationBase & source); | ^~~~~~~~ [ 66%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIdentificationCID.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIdentificationCID.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIdentificationCID.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIdentificationCID.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/CompNovoIdentificationCID.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationBase.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationCID.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/CompNovoIdentificationCID.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/ZhangSimilarityScore.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationBase.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:68:34: note: by 'OpenMS::PeakSpectrumCompareFunctor& OpenMS::PeakSpectrumCompareFunctor::operator=(const OpenMS::PeakSpectrumCompareFunctor&)' 68 | PeakSpectrumCompareFunctor & operator=(const PeakSpectrumCompareFunctor & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/ZhangSimilarityScore.h:74:28: note: by 'OpenMS::ZhangSimilarityScore& OpenMS::ZhangSimilarityScore::operator=(const OpenMS::ZhangSimilarityScore&)' 74 | ZhangSimilarityScore & operator=(const ZhangSimilarityScore & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationBase.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/MassDecompositionAlgorithm.h:107:34: note: by 'OpenMS::MassDecompositionAlgorithm& OpenMS::MassDecompositionAlgorithm::operator=(const OpenMS::MassDecompositionAlgorithm&)' 107 | MassDecompositionAlgorithm & operator=(const MassDecompositionAlgorithm & rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringBase.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationBase.h:45: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/PeptideHit.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/PeptideIdentification.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationBase.h:39: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringBase.h:102:30: note: by 'OpenMS::CompNovoIonScoringBase& OpenMS::CompNovoIonScoringBase::operator=(const OpenMS::CompNovoIonScoringBase&)' 102 | CompNovoIonScoringBase & operator=(const CompNovoIonScoringBase & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationBase.h:77:34: note: by 'OpenMS::CompNovoIdentificationBase& OpenMS::CompNovoIdentificationBase::operator=(const OpenMS::CompNovoIdentificationBase&)' 77 | CompNovoIdentificationBase & operator=(const CompNovoIdentificationBase & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationCID.h:73:33: note: by 'OpenMS::CompNovoIdentificationCID& OpenMS::CompNovoIdentificationCID::operator=(const OpenMS::CompNovoIdentificationCID&)' 73 | CompNovoIdentificationCID & operator=(const CompNovoIdentificationCID & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/CompNovoIdentificationCID.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/Normalizer.h:70:18: note: by 'OpenMS::Normalizer& OpenMS::Normalizer::operator=(const OpenMS::Normalizer&)' 70 | Normalizer & operator=(const Normalizer & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignmentScore.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/CompNovoIdentificationCID.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignment.h:84:25: note: by 'OpenMS::SpectrumAlignment& OpenMS::SpectrumAlignment::operator=(const OpenMS::SpectrumAlignment&)' 84 | SpectrumAlignment & operator=(const SpectrumAlignment & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignmentScore.h:89:30: note: by 'OpenMS::SpectrumAlignmentScore& OpenMS::SpectrumAlignmentScore::operator=(const OpenMS::SpectrumAlignmentScore&)' 89 | SpectrumAlignmentScore & operator=(const SpectrumAlignmentScore & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/CompNovoIdentificationCID.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringCID.h:84:29: note: by 'OpenMS::CompNovoIonScoringCID& OpenMS::CompNovoIonScoringCID::operator=(const OpenMS::CompNovoIonScoringCID&)' 84 | CompNovoIonScoringCID & operator=(const CompNovoIonScoringCID & source); | ^~~~~~~~ [ 66%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIonScoring.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIonScoring.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIonScoring.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIonScoring.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/CompNovoIonScoring.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoring.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/CompNovoIonScoring.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/ZhangSimilarityScore.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoring.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:68:34: note: by 'OpenMS::PeakSpectrumCompareFunctor& OpenMS::PeakSpectrumCompareFunctor::operator=(const OpenMS::PeakSpectrumCompareFunctor&)' 68 | PeakSpectrumCompareFunctor & operator=(const PeakSpectrumCompareFunctor & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/ZhangSimilarityScore.h:74:28: note: by 'OpenMS::ZhangSimilarityScore& OpenMS::ZhangSimilarityScore::operator=(const OpenMS::ZhangSimilarityScore&)' 74 | ZhangSimilarityScore & operator=(const ZhangSimilarityScore & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoring.h:45: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/MassDecompositionAlgorithm.h:107:34: note: by 'OpenMS::MassDecompositionAlgorithm& OpenMS::MassDecompositionAlgorithm::operator=(const OpenMS::MassDecompositionAlgorithm&)' 107 | MassDecompositionAlgorithm & operator=(const MassDecompositionAlgorithm & rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringBase.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoring.h:46: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/PeptideHit.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/PeptideIdentification.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoring.h:39: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringBase.h:102:30: note: by 'OpenMS::CompNovoIonScoringBase& OpenMS::CompNovoIonScoringBase::operator=(const OpenMS::CompNovoIonScoringBase&)' 102 | CompNovoIonScoringBase & operator=(const CompNovoIonScoringBase & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoring.h:84:26: note: by 'OpenMS::CompNovoIonScoring& OpenMS::CompNovoIonScoring::operator=(const OpenMS::CompNovoIonScoring&)' 84 | CompNovoIonScoring & operator=(const CompNovoIonScoring & source); | ^~~~~~~~ [ 66%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIdentification.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIdentification.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIdentification.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIdentification.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/CompNovoIdentification.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationBase.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentification.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/CompNovoIdentification.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/ZhangSimilarityScore.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationBase.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:68:34: note: by 'OpenMS::PeakSpectrumCompareFunctor& OpenMS::PeakSpectrumCompareFunctor::operator=(const OpenMS::PeakSpectrumCompareFunctor&)' 68 | PeakSpectrumCompareFunctor & operator=(const PeakSpectrumCompareFunctor & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/ZhangSimilarityScore.h:74:28: note: by 'OpenMS::ZhangSimilarityScore& OpenMS::ZhangSimilarityScore::operator=(const OpenMS::ZhangSimilarityScore&)' 74 | ZhangSimilarityScore & operator=(const ZhangSimilarityScore & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationBase.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/MassDecompositionAlgorithm.h:107:34: note: by 'OpenMS::MassDecompositionAlgorithm& OpenMS::MassDecompositionAlgorithm::operator=(const OpenMS::MassDecompositionAlgorithm&)' 107 | MassDecompositionAlgorithm & operator=(const MassDecompositionAlgorithm & rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringBase.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationBase.h:45: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/PeptideHit.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/PeptideIdentification.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationBase.h:39: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringBase.h:102:30: note: by 'OpenMS::CompNovoIonScoringBase& OpenMS::CompNovoIonScoringBase::operator=(const OpenMS::CompNovoIonScoringBase&)' 102 | CompNovoIonScoringBase & operator=(const CompNovoIonScoringBase & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationBase.h:77:34: note: by 'OpenMS::CompNovoIdentificationBase& OpenMS::CompNovoIdentificationBase::operator=(const OpenMS::CompNovoIdentificationBase&)' 77 | CompNovoIdentificationBase & operator=(const CompNovoIdentificationBase & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIdentification.h:73:30: note: by 'OpenMS::CompNovoIdentification& OpenMS::CompNovoIdentification::operator=(const OpenMS::CompNovoIdentification&)' 73 | CompNovoIdentification & operator=(const CompNovoIdentification & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/CompNovoIdentification.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/Normalizer.h:70:18: note: by 'OpenMS::Normalizer& OpenMS::Normalizer::operator=(const OpenMS::Normalizer&)' 70 | Normalizer & operator=(const Normalizer & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignmentScore.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/CompNovoIdentification.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignment.h:84:25: note: by 'OpenMS::SpectrumAlignment& OpenMS::SpectrumAlignment::operator=(const OpenMS::SpectrumAlignment&)' 84 | SpectrumAlignment & operator=(const SpectrumAlignment & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignmentScore.h:89:30: note: by 'OpenMS::SpectrumAlignmentScore& OpenMS::SpectrumAlignmentScore::operator=(const OpenMS::SpectrumAlignmentScore&)' 89 | SpectrumAlignmentScore & operator=(const SpectrumAlignmentScore & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/CompNovoIdentification.cpp:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoring.h:84:26: note: by 'OpenMS::CompNovoIonScoring& OpenMS::CompNovoIonScoring::operator=(const OpenMS::CompNovoIonScoring&)' 84 | CompNovoIonScoring & operator=(const CompNovoIonScoring & source); | ^~~~~~~~ [ 66%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIonScoringBase.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIonScoringBase.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIonScoringBase.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIonScoringBase.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/CompNovoIonScoringBase.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringBase.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/CompNovoIonScoringBase.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringBase.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringBase.h:102:30: note: by 'OpenMS::CompNovoIonScoringBase& OpenMS::CompNovoIonScoringBase::operator=(const OpenMS::CompNovoIonScoringBase&)' 102 | CompNovoIonScoringBase & operator=(const CompNovoIonScoringBase & source); | ^~~~~~~~ [ 66%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIonScoringCID.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIonScoringCID.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIonScoringCID.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIonScoringCID.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/CompNovoIonScoringCID.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringCID.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/DENOVO/CompNovoIonScoringCID.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/ZhangSimilarityScore.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringCID.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:68:34: note: by 'OpenMS::PeakSpectrumCompareFunctor& OpenMS::PeakSpectrumCompareFunctor::operator=(const OpenMS::PeakSpectrumCompareFunctor&)' 68 | PeakSpectrumCompareFunctor & operator=(const PeakSpectrumCompareFunctor & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/ZhangSimilarityScore.h:74:28: note: by 'OpenMS::ZhangSimilarityScore& OpenMS::ZhangSimilarityScore::operator=(const OpenMS::ZhangSimilarityScore&)' 74 | ZhangSimilarityScore & operator=(const ZhangSimilarityScore & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringCID.h:45: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/MassDecompositionAlgorithm.h:107:34: note: by 'OpenMS::MassDecompositionAlgorithm& OpenMS::MassDecompositionAlgorithm::operator=(const OpenMS::MassDecompositionAlgorithm&)' 107 | MassDecompositionAlgorithm & operator=(const MassDecompositionAlgorithm & rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringBase.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringCID.h:46: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/PeptideHit.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/PeptideIdentification.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringCID.h:39: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringBase.h:102:30: note: by 'OpenMS::CompNovoIonScoringBase& OpenMS::CompNovoIonScoringBase::operator=(const OpenMS::CompNovoIonScoringBase&)' 102 | CompNovoIonScoringBase & operator=(const CompNovoIonScoringBase & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringCID.h:84:29: note: by 'OpenMS::CompNovoIonScoringCID& OpenMS::CompNovoIonScoringCID::operator=(const OpenMS::CompNovoIonScoringCID&)' 84 | CompNovoIonScoringCID & operator=(const CompNovoIonScoringCID & source); | ^~~~~~~~ [ 66%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/PIP/LocalLinearMap.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/PIP/LocalLinearMap.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/PIP/LocalLinearMap.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/PIP/LocalLinearMap.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/PIP/LocalLinearMap.cpp [ 66%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/PIP/PeakIntensityPredictor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/PIP/PeakIntensityPredictor.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/PIP/PeakIntensityPredictor.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/PIP/PeakIntensityPredictor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/PIP/PeakIntensityPredictor.cpp [ 66%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MRM/MRMFragmentSelection.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MRM/MRMFragmentSelection.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MRM/MRMFragmentSelection.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MRM/MRMFragmentSelection.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MRM/MRMFragmentSelection.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/MRMFragmentSelection.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MRM/MRMFragmentSelection.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/MRMFragmentSelection.h:78:28: note: by 'OpenMS::MRMFragmentSelection& OpenMS::MRMFragmentSelection::operator=(const OpenMS::MRMFragmentSelection&)' 78 | MRMFragmentSelection & operator=(const MRMFragmentSelection & rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MRM/MRMFragmentSelection.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 66%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MRM/ReactionMonitoringTransition.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MRM/ReactionMonitoringTransition.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/MRM/ReactionMonitoringTransition.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/MRM/ReactionMonitoringTransition.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MRM/ReactionMonitoringTransition.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/MRM/ReactionMonitoringTransition.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperimentHelper.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 66%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/MetaboTargetedAssay.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/MetaboTargetedAssay.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/MetaboTargetedAssay.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/MetaboTargetedAssay.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/MetaboTargetedAssay.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/MetaboTargetedAssay.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/MetaboTargetedAssay.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/MetaboTargetedAssay.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureMapping.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/SiriusMSConverter.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/MetaboTargetedAssay.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureMapping.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.h:49:21: note: by 'OpenMS::KDTreeFeatureMaps& OpenMS::KDTreeFeatureMaps::operator=(const OpenMS::KDTreeFeatureMaps&)' 49 | class OPENMS_DLLAPI KDTreeFeatureMaps : public DefaultParamHandler | ^~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureMapping.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/stl_tree.h:63: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectralContrastAngle.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/MetaboTargetedAssay.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.h:73:35: note: by 'OpenMS::BinnedSpectrumCompareFunctor& OpenMS::BinnedSpectrumCompareFunctor::operator=(const OpenMS::BinnedSpectrumCompareFunctor&)' 73 | BinnedSpectrumCompareFunctor& operator=(const BinnedSpectrumCompareFunctor& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectralContrastAngle.h:73:34: note: by 'OpenMS::BinnedSpectralContrastAngle& OpenMS::BinnedSpectralContrastAngle::operator=(const OpenMS::BinnedSpectralContrastAngle&)' 73 | BinnedSpectralContrastAngle& operator=(const BinnedSpectralContrastAngle& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/CLUSTERING/ClusterHierarchical.h:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SpectraMerger.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/MetaboTargetedAssay.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:68:34: note: by 'OpenMS::PeakSpectrumCompareFunctor& OpenMS::PeakSpectrumCompareFunctor::operator=(const OpenMS::PeakSpectrumCompareFunctor&)' 68 | PeakSpectrumCompareFunctor & operator=(const PeakSpectrumCompareFunctor & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SpectraMerger.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignment.h:84:25: note: by 'OpenMS::SpectrumAlignment& OpenMS::SpectrumAlignment::operator=(const OpenMS::SpectrumAlignment&)' 84 | SpectrumAlignment & operator=(const SpectrumAlignment & source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SpectraMerger.h:45: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:97:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 97 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:133:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 133 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:171:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 171 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:207:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 207 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:242:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 242 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:278:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 278 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:309:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 309 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:343:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 343 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:395:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 395 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:444:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 444 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:489:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 489 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:527:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 527 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:564:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 564 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:617:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 617 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:663:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 663 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SpectraMerger.h:75:11: note: by 'OpenMS::SpectraMerger::SpectraDistance_::operator=' 75 | class SpectraDistance_ : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SpectraMerger.h:146:20: note: by 'OpenMS::SpectraMerger& OpenMS::SpectraMerger::operator=(const OpenMS::SpectraMerger&)' 146 | SpectraMerger& operator=(const SpectraMerger& source); | ^~~~~~~~ [ 67%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/MRMMapping.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/MRMMapping.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/MRMMapping.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/MRMMapping.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/MRMMapping.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/MRMMapping.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/MRMMapping.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/MRMMapping.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/MRMMapping.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/MRMMapping.h:95:18: note: by 'OpenMS::MRMMapping& OpenMS::MRMMapping::operator=(const OpenMS::MRMMapping&)' 95 | MRMMapping & operator=(const MRMMapping & rhs); | ^~~~~~~~ [ 67%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/PrecursorIonSelectionPreprocessing.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/PrecursorIonSelectionPreprocessing.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/PrecursorIonSelectionPreprocessing.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/PrecursorIonSelectionPreprocessing.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/PrecursorIonSelectionPreprocessing.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PrecursorIonSelectionPreprocessing.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/PrecursorIonSelectionPreprocessing.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PrecursorIonSelectionPreprocessing.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PrecursorIonSelectionPreprocessing.h:63:42: note: by 'OpenMS::PrecursorIonSelectionPreprocessing& OpenMS::PrecursorIonSelectionPreprocessing::operator=(const OpenMS::PrecursorIonSelectionPreprocessing&)' 63 | PrecursorIonSelectionPreprocessing & operator=(const PrecursorIonSelectionPreprocessing & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/PrecursorIonSelectionPreprocessing.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/DetectabilitySimulation.h:71:30: note: by 'OpenMS::DetectabilitySimulation& OpenMS::DetectabilitySimulation::operator=(const OpenMS::DetectabilitySimulation&)' 71 | DetectabilitySimulation& operator=(const DetectabilitySimulation& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/PrecursorIonSelectionPreprocessing.cpp:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/RTSimulation.h:78:19: note: by 'OpenMS::RTSimulation& OpenMS::RTSimulation::operator=(const OpenMS::RTSimulation&)' 78 | RTSimulation& operator=(const RTSimulation& source); | ^~~~~~~~ [ 67%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/PrecursorIonSelection.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/PrecursorIonSelection.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/PrecursorIonSelection.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/PrecursorIonSelection.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/PrecursorIonSelection.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PrecursorIonSelection.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/PrecursorIonSelection.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DBoundingBox.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ConvexHull2D.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PrecursorIonSelection.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PSLPFormulation.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PSLPFormulation.h:153:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 153 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PSLPFormulation.h:164:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 164 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PSLPFormulation.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PSLPFormulation.h:55:23: note: by 'OpenMS::PSLPFormulation& OpenMS::PSLPFormulation::operator=(const OpenMS::PSLPFormulation&)' 55 | class OPENMS_DLLAPI PSLPFormulation : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PrecursorIonSelection.h:94:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 94 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PrecursorIonSelection.h:105:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 105 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PrecursorIonSelection.h:52:23: note: by 'OpenMS::PrecursorIonSelection& OpenMS::PrecursorIonSelection::operator=(const OpenMS::PrecursorIonSelection&)' 52 | class OPENMS_DLLAPI PrecursorIonSelection : | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/PrecursorIonSelection.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PrecursorIonSelectionPreprocessing.h:63:42: note: by 'OpenMS::PrecursorIonSelectionPreprocessing& OpenMS::PrecursorIonSelectionPreprocessing::operator=(const OpenMS::PrecursorIonSelectionPreprocessing&)' 63 | PrecursorIonSelectionPreprocessing & operator=(const PrecursorIonSelectionPreprocessing & source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDMapper.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/OfflinePrecursorIonSelection.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/PrecursorIonSelection.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDMapper.h:79:15: note: by 'OpenMS::IDMapper& OpenMS::IDMapper::operator=(const OpenMS::IDMapper&)' 79 | IDMapper& operator=(const IDMapper& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/OfflinePrecursorIonSelection.h:61:23: note: by 'OpenMS::OfflinePrecursorIonSelection& OpenMS::OfflinePrecursorIonSelection::operator=(const OpenMS::OfflinePrecursorIonSelection&)' 61 | class OPENMS_DLLAPI OfflinePrecursorIonSelection : | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/OfflinePrecursorIonSelection.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/OfflinePrecursorIonSelection.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/OfflinePrecursorIonSelection.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/OfflinePrecursorIonSelection.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/OfflinePrecursorIonSelection.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/OfflinePrecursorIonSelection.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/OfflinePrecursorIonSelection.cpp:34: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DBoundingBox.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ConvexHull2D.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDMapper.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/OfflinePrecursorIonSelection.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDMapper.h:46: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDMapper.h:79:15: note: by 'OpenMS::IDMapper& OpenMS::IDMapper::operator=(const OpenMS::IDMapper&)' 79 | IDMapper& operator=(const IDMapper& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/OfflinePrecursorIonSelection.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PSLPFormulation.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PSLPFormulation.h:153:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 153 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PSLPFormulation.h:164:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 164 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PSLPFormulation.h:55:23: note: by 'OpenMS::PSLPFormulation& OpenMS::PSLPFormulation::operator=(const OpenMS::PSLPFormulation&)' 55 | class OPENMS_DLLAPI PSLPFormulation : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/OfflinePrecursorIonSelection.h:61:23: note: by 'OpenMS::OfflinePrecursorIonSelection& OpenMS::OfflinePrecursorIonSelection::operator=(const OpenMS::OfflinePrecursorIonSelection&)' 61 | class OPENMS_DLLAPI OfflinePrecursorIonSelection : | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/OfflinePrecursorIonSelection.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PrecursorIonSelectionPreprocessing.h:63:42: note: by 'OpenMS::PrecursorIonSelectionPreprocessing& OpenMS::PrecursorIonSelectionPreprocessing::operator=(const OpenMS::PrecursorIonSelectionPreprocessing&)' 63 | PrecursorIonSelectionPreprocessing & operator=(const PrecursorIonSelectionPreprocessing & source); | ^~~~~~~~ [ 67%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/PSLPFormulation.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/PSLPFormulation.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/PSLPFormulation.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/PSLPFormulation.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/PSLPFormulation.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PSLPFormulation.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/PSLPFormulation.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DBoundingBox.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ConvexHull2D.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PSLPFormulation.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PSLPFormulation.h:153:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 153 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PSLPFormulation.h:164:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 164 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PSLPFormulation.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PSLPFormulation.h:55:23: note: by 'OpenMS::PSLPFormulation& OpenMS::PSLPFormulation::operator=(const OpenMS::PSLPFormulation&)' 55 | class OPENMS_DLLAPI PSLPFormulation : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/PSLPFormulation.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PrecursorIonSelectionPreprocessing.h:63:42: note: by 'OpenMS::PrecursorIonSelectionPreprocessing& OpenMS::PrecursorIonSelectionPreprocessing::operator=(const OpenMS::PrecursorIonSelectionPreprocessing&)' 63 | PrecursorIonSelectionPreprocessing & operator=(const PrecursorIonSelectionPreprocessing & source); | ^~~~~~~~ [ 67%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/PSProteinInference.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/PSProteinInference.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/PSProteinInference.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/PSProteinInference.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/PSProteinInference.cpp [ 67%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/IncludeExcludeTarget.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/IncludeExcludeTarget.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/IncludeExcludeTarget.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/IncludeExcludeTarget.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/IncludeExcludeTarget.cpp [ 67%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/TargetedExperiment.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/TargetedExperiment.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/TargetedExperiment.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/TargetedExperiment.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/TargetedExperiment.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/TargetedExperiment.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperimentHelper.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 67%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/TargetedExperimentHelper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/TargetedExperimentHelper.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/TargetedExperimentHelper.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/TargetedExperimentHelper.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/TargetedExperimentHelper.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/TargetedExperimentHelper.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperimentHelper.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/TargetedExperimentHelper.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 67%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/InclusionExclusionList.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/InclusionExclusionList.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/InclusionExclusionList.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/TARGETED/InclusionExclusionList.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/InclusionExclusionList.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/InclusionExclusionList.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/InclusionExclusionList.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperimentHelper.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/InclusionExclusionList.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/InclusionExclusionList.h:52:23: note: by 'OpenMS::InclusionExclusionList::operator=' 52 | class OPENMS_DLLAPI InclusionExclusionList : | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/SimTypes.h:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/RTSimulation.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/InclusionExclusionList.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/RTSimulation.h:78:19: note: by 'OpenMS::RTSimulation& OpenMS::RTSimulation::operator=(const OpenMS::RTSimulation&)' 78 | RTSimulation& operator=(const RTSimulation& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/CLUSTERING/ClusterHierarchical.h:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/TARGETED/InclusionExclusionList.cpp:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:68:34: note: by 'OpenMS::PeakSpectrumCompareFunctor& OpenMS::PeakSpectrumCompareFunctor::operator=(const OpenMS::PeakSpectrumCompareFunctor&)' 68 | PeakSpectrumCompareFunctor & operator=(const PeakSpectrumCompareFunctor & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/CLUSTERING/ClusterHierarchical.h:49: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.h:73:35: note: by 'OpenMS::BinnedSpectrumCompareFunctor& OpenMS::BinnedSpectrumCompareFunctor::operator=(const OpenMS::BinnedSpectrumCompareFunctor&)' 73 | BinnedSpectrumCompareFunctor& operator=(const BinnedSpectrumCompareFunctor& source); | ^~~~~~~~ [ 67%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/HyperScore.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/HyperScore.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/HyperScore.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/HyperScore.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/RNPXL/HyperScore.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/RNPXL/HyperScore.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/RNPXL/HyperScore.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/RNPXL/HyperScore.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 67%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/ModifiedPeptideGenerator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/ModifiedPeptideGenerator.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/ModifiedPeptideGenerator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/ModifiedPeptideGenerator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/RNPXL/ModifiedPeptideGenerator.cpp [ 67%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/MorpheusScore.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/MorpheusScore.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/MorpheusScore.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/MorpheusScore.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/RNPXL/MorpheusScore.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/RNPXL/MorpheusScore.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/RNPXL/MorpheusScore.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/RNPXL/MorpheusScore.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 69%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/PScore.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/PScore.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/PScore.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/PScore.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/RNPXL/PScore.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AScore.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/RNPXL/PScore.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/RNPXL/PScore.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/RNPXL/PScore.cpp:36: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AScore.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AScore.h:70:23: note: by 'OpenMS::AScore& OpenMS::AScore::operator=(const OpenMS::AScore&)' 70 | class OPENMS_DLLAPI AScore: public DefaultParamHandler | ^~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/RNPXL/PScore.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 69%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/RNPxlFragmentAnnotationHelper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/RNPxlFragmentAnnotationHelper.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/RNPxlFragmentAnnotationHelper.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/RNPxlFragmentAnnotationHelper.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/RNPXL/RNPxlFragmentAnnotationHelper.cpp [ 69%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/RNPxlMarkerIonExtractor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/RNPxlMarkerIonExtractor.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/RNPxlMarkerIonExtractor.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/RNPxlMarkerIonExtractor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/RNPXL/RNPxlMarkerIonExtractor.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/Normalizer.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/RNPXL/RNPxlMarkerIonExtractor.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/RNPXL/RNPxlMarkerIonExtractor.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/RNPXL/RNPxlMarkerIonExtractor.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/Normalizer.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/stl_tree.h:63: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/Normalizer.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/Normalizer.h:70:18: note: by 'OpenMS::Normalizer& OpenMS::Normalizer::operator=(const OpenMS::Normalizer&)' 70 | Normalizer & operator=(const Normalizer & source); | ^~~~~~~~ [ 69%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/RNPxlModificationsGenerator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/RNPxlModificationsGenerator.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/RNPxlModificationsGenerator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/RNPxlModificationsGenerator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/RNPXL/RNPxlModificationsGenerator.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/ElementDB.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/RNPXL/RNPxlModificationsGenerator.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/RNPXL/RNPxlModificationsGenerator.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/RNPXL/RNPxlModificationsGenerator.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 69%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/RNPxlReport.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/RNPxlReport.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/RNPxlReport.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/RNPXL/RNPxlReport.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/RNPXL/RNPxlReport.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/RNPXL/RNPxlReport.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/RNPXL/RNPxlReport.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/RNPXL/RNPxlMarkerIonExtractor.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/RNPXL/RNPxlReport.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/RNPXL/RNPxlReport.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/stl_tree.h:63: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 69%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/OpenPepXLAlgorithm.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/OpenPepXLAlgorithm.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/OpenPepXLAlgorithm.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/OpenPepXLAlgorithm.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/OpenPepXLAlgorithm.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/OpenPepXLAlgorithm.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/OpenPepXLAlgorithm.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/ProgressLogger.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/OpenPepXLAlgorithm.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/stl_tree.h:63: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/OpenPepXLAlgorithm.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/OpenPepXLAlgorithm.h:113:23: note: by 'OpenMS::OpenPepXLAlgorithm& OpenMS::OpenPepXLAlgorithm::operator=(const OpenMS::OpenPepXLAlgorithm&)' 113 | class OPENMS_DLLAPI OpenPepXLAlgorithm : | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/OPXLSpectrumProcessingAlgorithms.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/OpenPepXLAlgorithm.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SimpleTSGXLMS.h:115:23: note: by 'OpenMS::SimpleTSGXLMS& OpenMS::SimpleTSGXLMS::operator=(const OpenMS::SimpleTSGXLMS&)' 115 | SimpleTSGXLMS & operator=(const SimpleTSGXLMS & tsg); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/OpenPepXLAlgorithm.cpp:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/NLargest.h:72:16: note: by 'OpenMS::NLargest& OpenMS::NLargest::operator=(const OpenMS::NLargest&)' 72 | NLargest & operator=(const NLargest & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/OpenPepXLAlgorithm.cpp:45: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDMapper.h:79:15: note: by 'OpenMS::IDMapper& OpenMS::IDMapper::operator=(const OpenMS::IDMapper&)' 79 | IDMapper& operator=(const IDMapper& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/OpenPepXLAlgorithm.cpp:46: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/PeptideIndexing.h:126:22: note: by 'OpenMS::PeptideIndexing& OpenMS::PeptideIndexing::operator=(const OpenMS::PeptideIndexing&)' 126 | class OPENMS_DLLAPI PeptideIndexing : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/OpenPepXLAlgorithm.cpp:48: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:73:23: note: by 'OpenMS::PeakPickerHiRes& OpenMS::PeakPickerHiRes::operator=(const OpenMS::PeakPickerHiRes&)' 73 | class OPENMS_DLLAPI PeakPickerHiRes : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/OpenPepXLAlgorithm.cpp:50: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGeneratorXLMS.h:90:42: note: by 'OpenMS::TheoreticalSpectrumGeneratorXLMS& OpenMS::TheoreticalSpectrumGeneratorXLMS::operator=(const OpenMS::TheoreticalSpectrumGeneratorXLMS&)' 90 | TheoreticalSpectrumGeneratorXLMS & operator=(const TheoreticalSpectrumGeneratorXLMS & tsg); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/PeptideIndexing.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h: In instantiation of 'bool seqan::_spawnConsumeChar(const Pattern >&, PatternAuxData&, Spawn&, AAcid) [with TNeedle = StringSet, Alloc<> > >; AAcid = SimpleType]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:913:33: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternAuxData&) [with TFinder = Finder, Alloc<> > >; TNeedle = StringSet, Alloc<> > >]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:1039:27: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:773:24: warning: implicitly-declared 'constexpr seqan::Spawn, seqan::Alloc<> > > >::Spawn(const seqan::Spawn, seqan::Alloc<> > > >&)' is deprecated [-Wdeprecated-copy] 773 | Spawn spawn2 = spawn; // a potential spawn | ^~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:238:14: note: because 'seqan::Spawn, seqan::Alloc<> > > >' has user-provided 'seqan::Spawn& seqan::Spawn::operator=(const seqan::Spawn&) [with TNeedle = seqan::StringSet, seqan::Alloc<> > >]' 238 | Spawn& operator=(const Spawn&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:793:24: warning: implicitly-declared 'constexpr seqan::Spawn, seqan::Alloc<> > > >::Spawn(const seqan::Spawn, seqan::Alloc<> > > >&)' is deprecated [-Wdeprecated-copy] 793 | Spawn spawn2 = spawn; // a potential spawn | ^~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:238:14: note: because 'seqan::Spawn, seqan::Alloc<> > > >' has user-provided 'seqan::Spawn& seqan::Spawn::operator=(const seqan::Spawn&) [with TNeedle = seqan::StringSet, seqan::Alloc<> > >]' 238 | Spawn& operator=(const Spawn&); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/basic_allocator.h:53, from /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic.h:74, from /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence.h:51, from /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/index.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/SeqanIncludeWrapper.h:44, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:38: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = long unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::_reportHit(TFinder&, const Pattern >&, PatternAuxData&) [with TFinder = Finder, Alloc<> > >; TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:570:11: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/new_allocator.h:34, from /usr/include/x86_64-linux-gnu/c++/13/bits/c++allocator.h:33, from /usr/include/c++/13/bits/allocator.h:46, from /usr/include/c++/13/bits/stl_tree.h:64: /usr/include/c++/13/new: In function 'void seqan::_reportHit(TFinder&, const Pattern >&, PatternAuxData&) [with TFinder = Finder, Alloc<> > >; TNeedle = StringSet, Alloc<> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_automaton.h:398:33: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_automaton.h:398:33, inlined from 'void seqan::_addStringToTrie(Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeyword = String, Alloc<> >; TPos = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_trie.h:98:41, inlined from 'void seqan::createTrie(Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeywords = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_trie.h:166:46, inlined from 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:422:15: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::EdgeDescriptor > >::Type seqan::addEdge(Graph >&, TVertexDescriptor, TVertexDescriptor, TLabel) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TVertexDescriptor = unsigned int; TLabel = SimpleType]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_automaton.h:436:11, inlined from 'void seqan::_addStringToTrie(Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeyword = String, Alloc<> >; TPos = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_trie.h:101:10, inlined from 'void seqan::createTrie(Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeywords = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_trie.h:166:46, inlined from 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:422:15: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::EdgeDescriptor > >::Type seqan::addEdge(Graph >&, TVertexDescriptor, TVertexDescriptor, TLabel) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TVertexDescriptor = unsigned int; TLabel = SimpleType]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_automaton.h:436:11, inlined from 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:526:18: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const unsigned int; _Up = unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const unsigned int*; _OI = unsigned int*]' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const unsigned int*; _OI = unsigned int*]' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const unsigned int*; _OI = unsigned int*]' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const unsigned int*; _OI = unsigned int*]' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = unsigned int*; TSource1 = const unsigned int*; TSource2 = const unsigned int*]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/array_construct_destruct.h:855:16, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = unsigned int*; TSource1 = const unsigned int*; TSource2 = const unsigned int*]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/array_construct_destruct.h:865:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const unsigned int; TValueTarget = unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/array_construct_destruct.h:1398:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const unsigned int; TValueTarget = unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/array_construct_destruct.h:1429:31, inlined from 'static void seqan::AssignString_::assign_(TTarget&, TSource&, typename seqan::Size::Type) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1151:31, inlined from 'void seqan::assign(String&, const TSource&, TSize, Tag) [with TTargetValue = unsigned int; TTargetSpec = Alloc<>; TSource = String >; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1185:42, inlined from 'void seqan::assign(TTarget&, const TSource&, typename Size::Type) [with TTarget = String >; TSource = String >]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/sequence_interface.h:1554:11, inlined from 'seqan::String >::String(const TSource&, TSize) [with TSource = seqan::String >; TSize = long unsigned int; TValue = unsigned int; TSpec = void]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:164:19, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1373:47, inlined from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = long unsigned int; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1421:42, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const unsigned int; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1374:19, inlined from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = long unsigned int; TTargetSpec = Alloc<>; TSource = unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1421:42, inlined from 'void seqan::append(TTarget&, const TSource&) [with TTarget = String >; TSource = unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/sequence_interface.h:1626:11, inlined from 'void seqan::addHits(const Pattern >&, PatternAuxData&, const Spawn&) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:665:15, inlined from 'bool seqan::_consumeChar(const Pattern >&, PatternAuxData&, Spawn&, AAcid) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:739:12, inlined from 'bool seqan::_spawnConsumeChar(const Pattern >&, PatternAuxData&, Spawn&, AAcid) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:795:25, inlined from 'bool seqan::find(TFinder&, const Pattern >&, PatternAuxData&) [with TFinder = Finder, Alloc<> > >; TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:913:33, inlined from 'bool OpenMS::AhoCorasickAmbiguous::findNext(const FuzzyACPattern&)' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:1039:27, inlined from 'void OpenMS::PeptideIndexing::addHits_(OpenMS::AhoCorasickAmbiguous&, const OpenMS::AhoCorasickAmbiguous::FuzzyACPattern&, const OpenMS::AhoCorasickAmbiguous::PeptideDB&, const OpenMS::String&, const OpenMS::String&, OpenMS::SignedSize, OpenMS::Int, FoundProteinFunctor&) const' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/PeptideIndexing.h:908:30, inlined from '_ZN6OpenMS15PeptideIndexing3runINS_10TFI_VectorEEENS0_9ExitCodesERNS_14FASTAContainerIT_EERSt6vectorINS_21ProteinIdentificationESaIS9_EERS8_INS_21PeptideIdentificationESaISD_EE._omp_fn.0' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/PeptideIndexing.h:474:27: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 69%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/OpenPepXLLFAlgorithm.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/OpenPepXLLFAlgorithm.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/OpenPepXLLFAlgorithm.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/OpenPepXLLFAlgorithm.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/OpenPepXLLFAlgorithm.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/OPXLDataStructs.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/OpenPepXLLFAlgorithm.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/OpenPepXLLFAlgorithm.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/stl_tree.h:63, from /usr/include/c++/13/map:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/ProgressLogger.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/OpenPepXLLFAlgorithm.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/OpenPepXLLFAlgorithm.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/OpenPepXLLFAlgorithm.h:103:23: note: by 'OpenMS::OpenPepXLLFAlgorithm& OpenMS::OpenPepXLLFAlgorithm::operator=(const OpenMS::OpenPepXLLFAlgorithm&)' 103 | class OPENMS_DLLAPI OpenPepXLLFAlgorithm : | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/OPXLSpectrumProcessingAlgorithms.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/OpenPepXLLFAlgorithm.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SimpleTSGXLMS.h:115:23: note: by 'OpenMS::SimpleTSGXLMS& OpenMS::SimpleTSGXLMS::operator=(const OpenMS::SimpleTSGXLMS&)' 115 | SimpleTSGXLMS & operator=(const SimpleTSGXLMS & tsg); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/OpenPepXLLFAlgorithm.cpp:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/PeptideIndexing.h:126:22: note: by 'OpenMS::PeptideIndexing& OpenMS::PeptideIndexing::operator=(const OpenMS::PeptideIndexing&)' 126 | class OPENMS_DLLAPI PeptideIndexing : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/OpenPepXLLFAlgorithm.cpp:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:73:23: note: by 'OpenMS::PeakPickerHiRes& OpenMS::PeakPickerHiRes::operator=(const OpenMS::PeakPickerHiRes&)' 73 | class OPENMS_DLLAPI PeakPickerHiRes : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/OpenPepXLLFAlgorithm.cpp:48: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGeneratorXLMS.h:90:42: note: by 'OpenMS::TheoreticalSpectrumGeneratorXLMS& OpenMS::TheoreticalSpectrumGeneratorXLMS::operator=(const OpenMS::TheoreticalSpectrumGeneratorXLMS&)' 90 | TheoreticalSpectrumGeneratorXLMS & operator=(const TheoreticalSpectrumGeneratorXLMS & tsg); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/PeptideIndexing.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h: In instantiation of 'bool seqan::_spawnConsumeChar(const Pattern >&, PatternAuxData&, Spawn&, AAcid) [with TNeedle = StringSet, Alloc<> > >; AAcid = SimpleType]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:913:33: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternAuxData&) [with TFinder = Finder, Alloc<> > >; TNeedle = StringSet, Alloc<> > >]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:1039:27: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:773:24: warning: implicitly-declared 'constexpr seqan::Spawn, seqan::Alloc<> > > >::Spawn(const seqan::Spawn, seqan::Alloc<> > > >&)' is deprecated [-Wdeprecated-copy] 773 | Spawn spawn2 = spawn; // a potential spawn | ^~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:238:14: note: because 'seqan::Spawn, seqan::Alloc<> > > >' has user-provided 'seqan::Spawn& seqan::Spawn::operator=(const seqan::Spawn&) [with TNeedle = seqan::StringSet, seqan::Alloc<> > >]' 238 | Spawn& operator=(const Spawn&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:793:24: warning: implicitly-declared 'constexpr seqan::Spawn, seqan::Alloc<> > > >::Spawn(const seqan::Spawn, seqan::Alloc<> > > >&)' is deprecated [-Wdeprecated-copy] 793 | Spawn spawn2 = spawn; // a potential spawn | ^~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:238:14: note: because 'seqan::Spawn, seqan::Alloc<> > > >' has user-provided 'seqan::Spawn& seqan::Spawn::operator=(const seqan::Spawn&) [with TNeedle = seqan::StringSet, seqan::Alloc<> > >]' 238 | Spawn& operator=(const Spawn&); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/basic_allocator.h:53, from /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic.h:74, from /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence.h:51, from /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/index.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/SeqanIncludeWrapper.h:44, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:38: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = long unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::_reportHit(TFinder&, const Pattern >&, PatternAuxData&) [with TFinder = Finder, Alloc<> > >; TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:570:11: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/new_allocator.h:34, from /usr/include/x86_64-linux-gnu/c++/13/bits/c++allocator.h:33, from /usr/include/c++/13/bits/allocator.h:46, from /usr/include/c++/13/bits/stl_tree.h:64: /usr/include/c++/13/new: In function 'void seqan::_reportHit(TFinder&, const Pattern >&, PatternAuxData&) [with TFinder = Finder, Alloc<> > >; TNeedle = StringSet, Alloc<> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_automaton.h:398:33: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_automaton.h:398:33, inlined from 'void seqan::_addStringToTrie(Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeyword = String, Alloc<> >; TPos = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_trie.h:98:41, inlined from 'void seqan::createTrie(Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeywords = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_trie.h:166:46, inlined from 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:422:15: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::EdgeDescriptor > >::Type seqan::addEdge(Graph >&, TVertexDescriptor, TVertexDescriptor, TLabel) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TVertexDescriptor = unsigned int; TLabel = SimpleType]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_automaton.h:436:11, inlined from 'void seqan::_addStringToTrie(Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeyword = String, Alloc<> >; TPos = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_trie.h:101:10, inlined from 'void seqan::createTrie(Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeywords = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_trie.h:166:46, inlined from 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:422:15: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::EdgeDescriptor > >::Type seqan::addEdge(Graph >&, TVertexDescriptor, TVertexDescriptor, TLabel) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TVertexDescriptor = unsigned int; TLabel = SimpleType]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_automaton.h:436:11, inlined from 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:526:18: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const unsigned int; _Up = unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const unsigned int*; _OI = unsigned int*]' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const unsigned int*; _OI = unsigned int*]' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const unsigned int*; _OI = unsigned int*]' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const unsigned int*; _OI = unsigned int*]' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = unsigned int*; TSource1 = const unsigned int*; TSource2 = const unsigned int*]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/array_construct_destruct.h:855:16, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = unsigned int*; TSource1 = const unsigned int*; TSource2 = const unsigned int*]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/array_construct_destruct.h:865:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const unsigned int; TValueTarget = unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/array_construct_destruct.h:1398:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const unsigned int; TValueTarget = unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/array_construct_destruct.h:1429:31, inlined from 'static void seqan::AssignString_::assign_(TTarget&, TSource&, typename seqan::Size::Type) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1151:31, inlined from 'void seqan::assign(String&, const TSource&, TSize, Tag) [with TTargetValue = unsigned int; TTargetSpec = Alloc<>; TSource = String >; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1185:42, inlined from 'void seqan::assign(TTarget&, const TSource&, typename Size::Type) [with TTarget = String >; TSource = String >]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/sequence_interface.h:1554:11, inlined from 'seqan::String >::String(const TSource&, TSize) [with TSource = seqan::String >; TSize = long unsigned int; TValue = unsigned int; TSpec = void]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:164:19, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1373:47, inlined from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = long unsigned int; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1421:42, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const unsigned int; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1374:19, inlined from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = long unsigned int; TTargetSpec = Alloc<>; TSource = unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1421:42, inlined from 'void seqan::append(TTarget&, const TSource&) [with TTarget = String >; TSource = unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/sequence_interface.h:1626:11, inlined from 'void seqan::addHits(const Pattern >&, PatternAuxData&, const Spawn&) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:665:15, inlined from 'bool seqan::_consumeChar(const Pattern >&, PatternAuxData&, Spawn&, AAcid) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:739:12, inlined from 'bool seqan::_spawnConsumeChar(const Pattern >&, PatternAuxData&, Spawn&, AAcid) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:795:25, inlined from 'bool seqan::find(TFinder&, const Pattern >&, PatternAuxData&) [with TFinder = Finder, Alloc<> > >; TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:913:33, inlined from 'bool OpenMS::AhoCorasickAmbiguous::findNext(const FuzzyACPattern&)' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:1039:27, inlined from 'void OpenMS::PeptideIndexing::addHits_(OpenMS::AhoCorasickAmbiguous&, const OpenMS::AhoCorasickAmbiguous::FuzzyACPattern&, const OpenMS::AhoCorasickAmbiguous::PeptideDB&, const OpenMS::String&, const OpenMS::String&, OpenMS::SignedSize, OpenMS::Int, FoundProteinFunctor&) const' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/PeptideIndexing.h:908:30, inlined from '_ZN6OpenMS15PeptideIndexing3runINS_10TFI_VectorEEENS0_9ExitCodesERNS_14FASTAContainerIT_EERSt6vectorINS_21ProteinIdentificationESaIS9_EERS8_INS_21PeptideIdentificationESaISD_EE._omp_fn.0' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/PeptideIndexing.h:474:27: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 69%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/OPXLDataStructs.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/OPXLDataStructs.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/OPXLDataStructs.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/OPXLDataStructs.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/OPXLDataStructs.cpp [ 69%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/OPXLHelper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/OPXLHelper.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/OPXLHelper.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/OPXLHelper.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/OPXLHelper.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/OPXLDataStructs.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/OPXLHelper.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/OPXLHelper.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/PeptideHit.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/OPXLDataStructs.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 69%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/OPXLSpectrumProcessingAlgorithms.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/OPXLSpectrumProcessingAlgorithms.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/OPXLSpectrumProcessingAlgorithms.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/OPXLSpectrumProcessingAlgorithms.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/OPXLSpectrumProcessingAlgorithms.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/OPXLSpectrumProcessingAlgorithms.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/OPXLSpectrumProcessingAlgorithms.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/OPXLDataStructs.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SimpleTSGXLMS.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/OPXLSpectrumProcessingAlgorithms.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SimpleTSGXLMS.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SimpleTSGXLMS.h:115:23: note: by 'OpenMS::SimpleTSGXLMS& OpenMS::SimpleTSGXLMS::operator=(const OpenMS::SimpleTSGXLMS&)' 115 | SimpleTSGXLMS & operator=(const SimpleTSGXLMS & tsg); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/OPXLSpectrumProcessingAlgorithms.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/ThresholdMower.h:66:22: note: by 'OpenMS::ThresholdMower& OpenMS::ThresholdMower::operator=(const OpenMS::ThresholdMower&)' 66 | ThresholdMower & operator=(const ThresholdMower & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/OPXLSpectrumProcessingAlgorithms.cpp:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/Normalizer.h:70:18: note: by 'OpenMS::Normalizer& OpenMS::Normalizer::operator=(const OpenMS::Normalizer&)' 70 | Normalizer & operator=(const Normalizer & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/OPXLSpectrumProcessingAlgorithms.cpp:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/NLargest.h:72:16: note: by 'OpenMS::NLargest& OpenMS::NLargest::operator=(const OpenMS::NLargest&)' 72 | NLargest & operator=(const NLargest & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/OPXLSpectrumProcessingAlgorithms.cpp:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/WindowMower.h:69:18: note: by 'OpenMS::WindowMower& OpenMS::WindowMower::operator=(const OpenMS::WindowMower&)' 69 | WindowMower& operator=(const WindowMower& source); | ^~~~~~~~ [ 69%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/XFDRAlgorithm.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/XFDRAlgorithm.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/XFDRAlgorithm.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/XFDRAlgorithm.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/XFDRAlgorithm.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/XFDRAlgorithm.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/XFDRAlgorithm.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/XFDRAlgorithm.h:65:23: note: by 'OpenMS::XFDRAlgorithm& OpenMS::XFDRAlgorithm::operator=(const OpenMS::XFDRAlgorithm&)' 65 | class OPENMS_DLLAPI XFDRAlgorithm : | ^~~~~~~~~~~~~ [ 69%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/XQuestScores.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/XQuestScores.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/XQuestScores.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/XLMS/XQuestScores.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/XQuestScores.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/XQuestScores.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/XLMS/XQuestScores.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/OPXLDataStructs.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SimpleTSGXLMS.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/XLMS/XQuestScores.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SimpleTSGXLMS.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SimpleTSGXLMS.h:115:23: note: by 'OpenMS::SimpleTSGXLMS& OpenMS::SimpleTSGXLMS::operator=(const OpenMS::SimpleTSGXLMS&)' 115 | SimpleTSGXLMS & operator=(const SimpleTSGXLMS & tsg); | ^~~~~~~~ [ 69%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/BASELINE/MorphologicalFilter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/BASELINE/MorphologicalFilter.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/BASELINE/MorphologicalFilter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/BASELINE/MorphologicalFilter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/BASELINE/MorphologicalFilter.cpp [ 71%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/BernNorm.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/BernNorm.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/BernNorm.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/BernNorm.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/BernNorm.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/BernNorm.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/BernNorm.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/BernNorm.h:76:16: note: by 'OpenMS::BernNorm& OpenMS::BernNorm::operator=(const OpenMS::BernNorm&)' 76 | BernNorm & operator=(const BernNorm & source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/BernNorm.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/BernNorm.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 71%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/ComplementFilter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/ComplementFilter.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/ComplementFilter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/ComplementFilter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/ComplementFilter.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/FilterFunctor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/ComplementFilter.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/ComplementFilter.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/FilterFunctor.h:59:21: note: by 'OpenMS::FilterFunctor& OpenMS::FilterFunctor::operator=(const OpenMS::FilterFunctor&)' 59 | FilterFunctor & operator=(const FilterFunctor & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/ComplementFilter.h:71:24: note: by 'OpenMS::ComplementFilter& OpenMS::ComplementFilter::operator=(const OpenMS::ComplementFilter&)' 71 | ComplementFilter & operator=(const ComplementFilter & source); | ^~~~~~~~ [ 71%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/ComplementMarker.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/ComplementMarker.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/ComplementMarker.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/ComplementMarker.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/ComplementMarker.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/PeakMarker.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/ComplementMarker.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/ComplementMarker.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/PeakMarker.h:62:18: note: by 'OpenMS::PeakMarker& OpenMS::PeakMarker::operator=(const OpenMS::PeakMarker&)' 62 | PeakMarker & operator=(const PeakMarker & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/ComplementMarker.h:71:24: note: by 'OpenMS::ComplementMarker& OpenMS::ComplementMarker::operator=(const OpenMS::ComplementMarker&)' 71 | ComplementMarker & operator=(const ComplementMarker & source); | ^~~~~~~~ [ 71%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/FilterFunctor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/FilterFunctor.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/FilterFunctor.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/FilterFunctor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/FilterFunctor.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/FilterFunctor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/FilterFunctor.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/FilterFunctor.h:59:21: note: by 'OpenMS::FilterFunctor& OpenMS::FilterFunctor::operator=(const OpenMS::FilterFunctor&)' 59 | FilterFunctor & operator=(const FilterFunctor & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/FilterFunctor.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/ComplementFilter.h:71:24: note: by 'OpenMS::ComplementFilter& OpenMS::ComplementFilter::operator=(const OpenMS::ComplementFilter&)' 71 | ComplementFilter & operator=(const ComplementFilter & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/FilterFunctor.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/GoodDiffFilter.h:73:22: note: by 'OpenMS::GoodDiffFilter& OpenMS::GoodDiffFilter::operator=(const OpenMS::GoodDiffFilter&)' 73 | GoodDiffFilter & operator=(const GoodDiffFilter & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/FilterFunctor.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/IntensityBalanceFilter.h:73:30: note: by 'OpenMS::IntensityBalanceFilter& OpenMS::IntensityBalanceFilter::operator=(const OpenMS::IntensityBalanceFilter&)' 73 | IntensityBalanceFilter & operator=(const IntensityBalanceFilter & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/FilterFunctor.cpp:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/NeutralLossDiffFilter.h:71:29: note: by 'OpenMS::NeutralLossDiffFilter& OpenMS::NeutralLossDiffFilter::operator=(const OpenMS::NeutralLossDiffFilter&)' 71 | NeutralLossDiffFilter & operator=(const NeutralLossDiffFilter & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/FilterFunctor.cpp:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/IsotopeDiffFilter.h:70:25: note: by 'OpenMS::IsotopeDiffFilter& OpenMS::IsotopeDiffFilter::operator=(const OpenMS::IsotopeDiffFilter&)' 70 | IsotopeDiffFilter & operator=(const IsotopeDiffFilter & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/FilterFunctor.cpp:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/TICFilter.h:68:17: note: by 'OpenMS::TICFilter& OpenMS::TICFilter::operator=(const OpenMS::TICFilter&)' 68 | TICFilter & operator=(const TICFilter & source); | ^~~~~~~~ [ 71%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/GoodDiffFilter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/GoodDiffFilter.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/GoodDiffFilter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/GoodDiffFilter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/GoodDiffFilter.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/FilterFunctor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/GoodDiffFilter.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/GoodDiffFilter.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/FilterFunctor.h:59:21: note: by 'OpenMS::FilterFunctor& OpenMS::FilterFunctor::operator=(const OpenMS::FilterFunctor&)' 59 | FilterFunctor & operator=(const FilterFunctor & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/GoodDiffFilter.h:73:22: note: by 'OpenMS::GoodDiffFilter& OpenMS::GoodDiffFilter::operator=(const OpenMS::GoodDiffFilter&)' 73 | GoodDiffFilter & operator=(const GoodDiffFilter & source); | ^~~~~~~~ [ 71%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/IntensityBalanceFilter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/IntensityBalanceFilter.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/IntensityBalanceFilter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/IntensityBalanceFilter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/IntensityBalanceFilter.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/FilterFunctor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/IntensityBalanceFilter.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/IntensityBalanceFilter.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/FilterFunctor.h:59:21: note: by 'OpenMS::FilterFunctor& OpenMS::FilterFunctor::operator=(const OpenMS::FilterFunctor&)' 59 | FilterFunctor & operator=(const FilterFunctor & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/IntensityBalanceFilter.h:73:30: note: by 'OpenMS::IntensityBalanceFilter& OpenMS::IntensityBalanceFilter::operator=(const OpenMS::IntensityBalanceFilter&)' 73 | IntensityBalanceFilter & operator=(const IntensityBalanceFilter & source); | ^~~~~~~~ [ 71%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/IsotopeDiffFilter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/IsotopeDiffFilter.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/IsotopeDiffFilter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/IsotopeDiffFilter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/IsotopeDiffFilter.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/FilterFunctor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/IsotopeDiffFilter.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/IsotopeDiffFilter.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/FilterFunctor.h:59:21: note: by 'OpenMS::FilterFunctor& OpenMS::FilterFunctor::operator=(const OpenMS::FilterFunctor&)' 59 | FilterFunctor & operator=(const FilterFunctor & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/IsotopeDiffFilter.h:70:25: note: by 'OpenMS::IsotopeDiffFilter& OpenMS::IsotopeDiffFilter::operator=(const OpenMS::IsotopeDiffFilter&)' 70 | IsotopeDiffFilter & operator=(const IsotopeDiffFilter & source); | ^~~~~~~~ [ 71%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/IsotopeMarker.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/IsotopeMarker.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/IsotopeMarker.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/IsotopeMarker.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/IsotopeMarker.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/PeakMarker.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/IsotopeMarker.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/IsotopeMarker.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/PeakMarker.h:62:18: note: by 'OpenMS::PeakMarker& OpenMS::PeakMarker::operator=(const OpenMS::PeakMarker&)' 62 | PeakMarker & operator=(const PeakMarker & source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/CoarseIsotopePatternGenerator.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/IsotopeMarker.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/PeakMarker.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/IsotopeMarker.h:77:21: note: by 'OpenMS::IsotopeMarker& OpenMS::IsotopeMarker::operator=(const OpenMS::IsotopeMarker&)' 77 | IsotopeMarker & operator=(const IsotopeMarker & source); | ^~~~~~~~ [ 71%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/LinearResampler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/LinearResampler.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/LinearResampler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/LinearResampler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/LinearResampler.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResampler.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/LinearResampler.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResampler.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResampler.h:61:23: note: by 'OpenMS::LinearResampler& OpenMS::LinearResampler::operator=(const OpenMS::LinearResampler&)' 61 | class OPENMS_DLLAPI LinearResampler : | ^~~~~~~~~~~~~~~ [ 71%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/MarkerMower.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/MarkerMower.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/MarkerMower.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/MarkerMower.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/MarkerMower.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/MarkerMower.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/MarkerMower.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/MarkerMower.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/PeakMarker.h:62:18: note: by 'OpenMS::PeakMarker& OpenMS::PeakMarker::operator=(const OpenMS::PeakMarker&)' 62 | PeakMarker & operator=(const PeakMarker & source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/MarkerMower.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/MarkerMower.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/MarkerMower.h:69:19: note: by 'OpenMS::MarkerMower& OpenMS::MarkerMower::operator=(const OpenMS::MarkerMower&)' 69 | MarkerMower & operator=(const MarkerMower & source); | ^~~~~~~~ [ 71%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/NLargest.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/NLargest.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/NLargest.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/NLargest.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/NLargest.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/NLargest.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/NLargest.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/NLargest.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/NLargest.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/NLargest.h:72:16: note: by 'OpenMS::NLargest& OpenMS::NLargest::operator=(const OpenMS::NLargest&)' 72 | NLargest & operator=(const NLargest & source); | ^~~~~~~~ [ 71%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/NeutralLossDiffFilter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/NeutralLossDiffFilter.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/NeutralLossDiffFilter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/NeutralLossDiffFilter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/NeutralLossDiffFilter.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/FilterFunctor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/NeutralLossDiffFilter.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/NeutralLossDiffFilter.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/FilterFunctor.h:59:21: note: by 'OpenMS::FilterFunctor& OpenMS::FilterFunctor::operator=(const OpenMS::FilterFunctor&)' 59 | FilterFunctor & operator=(const FilterFunctor & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/NeutralLossDiffFilter.h:71:29: note: by 'OpenMS::NeutralLossDiffFilter& OpenMS::NeutralLossDiffFilter::operator=(const OpenMS::NeutralLossDiffFilter&)' 71 | NeutralLossDiffFilter & operator=(const NeutralLossDiffFilter & source); | ^~~~~~~~ [ 71%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/NeutralLossMarker.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/NeutralLossMarker.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/NeutralLossMarker.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/NeutralLossMarker.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/NeutralLossMarker.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/PeakMarker.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/NeutralLossMarker.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/NeutralLossMarker.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/PeakMarker.h:62:18: note: by 'OpenMS::PeakMarker& OpenMS::PeakMarker::operator=(const OpenMS::PeakMarker&)' 62 | PeakMarker & operator=(const PeakMarker & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/NeutralLossMarker.h:71:25: note: by 'OpenMS::NeutralLossMarker& OpenMS::NeutralLossMarker::operator=(const OpenMS::NeutralLossMarker&)' 71 | NeutralLossMarker & operator=(const NeutralLossMarker & source); | ^~~~~~~~ [ 71%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/Normalizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/Normalizer.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/Normalizer.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/Normalizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/Normalizer.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/Normalizer.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/Normalizer.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/Normalizer.h:39: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/Normalizer.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/Normalizer.h:70:18: note: by 'OpenMS::Normalizer& OpenMS::Normalizer::operator=(const OpenMS::Normalizer&)' 70 | Normalizer & operator=(const Normalizer & source); | ^~~~~~~~ [ 73%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/ParentPeakMower.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/ParentPeakMower.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/ParentPeakMower.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/ParentPeakMower.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/ParentPeakMower.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/ParentPeakMower.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/ParentPeakMower.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/ParentPeakMower.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/ParentPeakMower.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/ParentPeakMower.h:74:22: note: by 'OpenMS::ParentPeakMower& OpenMS::ParentPeakMower::operator=(const OpenMS::ParentPeakMower&)' 74 | ParentPeakMower& operator=(const ParentPeakMower& source); | ^~~~~~~~ [ 73%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/PeakMarker.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/PeakMarker.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/PeakMarker.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/PeakMarker.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/PeakMarker.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/PeakMarker.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/PeakMarker.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/PeakMarker.h:62:18: note: by 'OpenMS::PeakMarker& OpenMS::PeakMarker::operator=(const OpenMS::PeakMarker&)' 62 | PeakMarker & operator=(const PeakMarker & source); | ^~~~~~~~ [ 73%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/Scaler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/Scaler.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/Scaler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/Scaler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/Scaler.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/Scaler.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/Scaler.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/Scaler.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/Scaler.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/Scaler.h:66:14: note: by 'OpenMS::Scaler& OpenMS::Scaler::operator=(const OpenMS::Scaler&)' 66 | Scaler & operator=(const Scaler & source); | ^~~~~~~~ [ 73%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/SpectraMerger.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/SpectraMerger.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/SpectraMerger.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/SpectraMerger.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/SpectraMerger.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SpectraMerger.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/SpectraMerger.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/CLUSTERING/ClusterHierarchical.h:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SpectraMerger.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:68:34: note: by 'OpenMS::PeakSpectrumCompareFunctor& OpenMS::PeakSpectrumCompareFunctor::operator=(const OpenMS::PeakSpectrumCompareFunctor&)' 68 | PeakSpectrumCompareFunctor & operator=(const PeakSpectrumCompareFunctor & source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrum.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/CLUSTERING/ClusterHierarchical.h:48: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/CLUSTERING/ClusterHierarchical.h:49: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.h:73:35: note: by 'OpenMS::BinnedSpectrumCompareFunctor& OpenMS::BinnedSpectrumCompareFunctor::operator=(const OpenMS::BinnedSpectrumCompareFunctor&)' 73 | BinnedSpectrumCompareFunctor& operator=(const BinnedSpectrumCompareFunctor& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SpectraMerger.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignment.h:84:25: note: by 'OpenMS::SpectrumAlignment& OpenMS::SpectrumAlignment::operator=(const OpenMS::SpectrumAlignment&)' 84 | SpectrumAlignment & operator=(const SpectrumAlignment & source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SpectraMerger.h:45: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:97:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 97 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:133:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 133 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:171:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 171 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:207:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 207 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:242:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 242 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:278:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 278 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:309:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 309 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:343:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 343 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:395:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 395 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:444:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 444 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:489:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 489 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:527:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 527 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:564:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 564 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:617:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 617 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:663:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 663 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SpectraMerger.h:46: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SpectraMerger.h:75:11: note: by 'OpenMS::SpectraMerger::SpectraDistance_::operator=' 75 | class SpectraDistance_ : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SpectraMerger.h:146:20: note: by 'OpenMS::SpectraMerger& OpenMS::SpectraMerger::operator=(const OpenMS::SpectraMerger&)' 146 | SpectraMerger& operator=(const SpectraMerger& source); | ^~~~~~~~ [ 73%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/SqrtMower.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/SqrtMower.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/SqrtMower.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/SqrtMower.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/SqrtMower.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SqrtMower.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/SqrtMower.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SqrtMower.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SqrtMower.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SqrtMower.h:66:17: note: by 'OpenMS::SqrtMower& OpenMS::SqrtMower::operator=(const OpenMS::SqrtMower&)' 66 | SqrtMower & operator=(const SqrtMower & source); | ^~~~~~~~ [ 73%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/TICFilter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/TICFilter.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/TICFilter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/TICFilter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/TICFilter.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/FilterFunctor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/TICFilter.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/TICFilter.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/FilterFunctor.h:59:21: note: by 'OpenMS::FilterFunctor& OpenMS::FilterFunctor::operator=(const OpenMS::FilterFunctor&)' 59 | FilterFunctor & operator=(const FilterFunctor & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/TICFilter.h:68:17: note: by 'OpenMS::TICFilter& OpenMS::TICFilter::operator=(const OpenMS::TICFilter&)' 68 | TICFilter & operator=(const TICFilter & source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/TICFilter.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 73%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/ThresholdMower.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/ThresholdMower.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/ThresholdMower.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/ThresholdMower.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/ThresholdMower.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/ThresholdMower.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/ThresholdMower.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/ThresholdMower.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/ThresholdMower.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/ThresholdMower.h:66:22: note: by 'OpenMS::ThresholdMower& OpenMS::ThresholdMower::operator=(const OpenMS::ThresholdMower&)' 66 | ThresholdMower & operator=(const ThresholdMower & source); | ^~~~~~~~ [ 73%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/WindowMower.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/WindowMower.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/WindowMower.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/TRANSFORMERS/WindowMower.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/WindowMower.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/WindowMower.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/TRANSFORMERS/WindowMower.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/WindowMower.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/WindowMower.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/WindowMower.h:69:18: note: by 'OpenMS::WindowMower& OpenMS::WindowMower::operator=(const OpenMS::WindowMower&)' 69 | WindowMower& operator=(const WindowMower& source); | ^~~~~~~~ [ 73%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/DataFilters.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/DataFilters.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/DataFilters.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/DataFilters.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/DATAREDUCTION/DataFilters.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/DATAREDUCTION/DataFilters.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/DATAREDUCTION/DataFilters.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/DATAREDUCTION/DataFilters.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/DATAREDUCTION/DataFilters.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/DATAREDUCTION/DataFilters.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 73%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/Deisotoper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/Deisotoper.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/Deisotoper.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/Deisotoper.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/DATAREDUCTION/Deisotoper.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/DATAREDUCTION/Deisotoper.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Constants.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/DATAREDUCTION/Deisotoper.cpp:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 73%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/ElutionPeakDetection.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/ElutionPeakDetection.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/ElutionPeakDetection.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/ElutionPeakDetection.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/DATAREDUCTION/ElutionPeakDetection.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/DATAREDUCTION/ElutionPeakDetection.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/DATAREDUCTION/ElutionPeakDetection.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ListUtils.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/DATAREDUCTION/ElutionPeakDetection.cpp:36: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MassTrace.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/DATAREDUCTION/ElutionPeakDetection.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MassTrace.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/DATAREDUCTION/ElutionPeakDetection.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/DATAREDUCTION/ElutionPeakDetection.h:76:23: note: by 'OpenMS::ElutionPeakDetection& OpenMS::ElutionPeakDetection::operator=(const OpenMS::ElutionPeakDetection&)' 76 | class OPENMS_DLLAPI ElutionPeakDetection : | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/DATAREDUCTION/ElutionPeakDetection.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/SavitzkyGolayFilter.h:101:23: note: by 'OpenMS::SavitzkyGolayFilter& OpenMS::SavitzkyGolayFilter::operator=(const OpenMS::SavitzkyGolayFilter&)' 101 | class OPENMS_DLLAPI SavitzkyGolayFilter : | ^~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/FeatureFindingMetabo.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/FeatureFindingMetabo.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/FeatureFindingMetabo.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/FeatureFindingMetabo.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/DATAREDUCTION/FeatureFindingMetabo.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MassTrace.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/DATAREDUCTION/FeatureFindingMetabo.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/DATAREDUCTION/FeatureFindingMetabo.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MassTrace.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/DATAREDUCTION/FeatureFindingMetabo.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/DATAREDUCTION/FeatureFindingMetabo.h:177:23: note: by 'OpenMS::FeatureFindingMetabo& OpenMS::FeatureFindingMetabo::operator=(const OpenMS::FeatureFindingMetabo&)' 177 | class OPENMS_DLLAPI FeatureFindingMetabo : | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathHelper.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/DATAREDUCTION/FeatureFindingMetabo.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathScoring.h:46, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathHelper.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:157:17: note: by 'OpenMS::DIAScoring& OpenMS::DIAScoring::operator=(const OpenMS::DIAScoring&)' 157 | DIAScoring& operator=(const DIAScoring& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SONARScoring.h:83:19: note: by 'OpenMS::SONARScoring& OpenMS::SONARScoring::operator=(const OpenMS::SONARScoring&)' 83 | SONARScoring& operator=(const SONARScoring& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: note: by 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' 91 | virtual Fitter1D& operator=(const Fitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: warning: 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: note: by 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' 101 | virtual LevMarqFitter1D & operator=(const LevMarqFitter1D & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: warning: 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h:61:26: note: by 'virtual OpenMS::EmgFitter1D& OpenMS::EmgFitter1D::operator=(const OpenMS::EmgFitter1D&)' 61 | virtual EmgFitter1D& operator=(const EmgFitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgModel.h:68:24: note: by 'virtual OpenMS::EmgModel& OpenMS::EmgModel::operator=(const OpenMS::EmgModel&)' 68 | virtual EmgModel & operator=(const EmgModel & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/GaussFilter.h:74:23: note: by 'OpenMS::GaussFilter& OpenMS::GaussFilter::operator=(const OpenMS::GaussFilter&)' 74 | class OPENMS_DLLAPI GaussFilter : | ^~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:93:23: note: by 'OpenMS::MRMFeatureFinderScoring& OpenMS::MRMFeatureFinderScoring::operator=(const OpenMS::MRMFeatureFinderScoring&)' 93 | class OPENMS_DLLAPI MRMFeatureFinderScoring : | ^~~~~~~~~~~~~~~~~~~~~~~ [ 73%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/IsotopeDistributionCache.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/IsotopeDistributionCache.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/IsotopeDistributionCache.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/IsotopeDistributionCache.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/DATAREDUCTION/IsotopeDistributionCache.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPickedHelperStructs.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/DATAREDUCTION/IsotopeDistributionCache.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/DATAREDUCTION/IsotopeDistributionCache.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPickedHelperStructs.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 75%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/MassTraceDetection.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/MassTraceDetection.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/MassTraceDetection.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/MassTraceDetection.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/DATAREDUCTION/MassTraceDetection.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MassTrace.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/DATAREDUCTION/MassTraceDetection.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/DATAREDUCTION/MassTraceDetection.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MassTrace.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/DATAREDUCTION/MassTraceDetection.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/DATAREDUCTION/MassTraceDetection.h:72:25: note: by 'OpenMS::MassTraceDetection& OpenMS::MassTraceDetection::operator=(const OpenMS::MassTraceDetection&)' 72 | class OPENMS_DLLAPI MassTraceDetection : | ^~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/SplineInterpolatedPeaks.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/SplineInterpolatedPeaks.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/SplineInterpolatedPeaks.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/SplineInterpolatedPeaks.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/DATAREDUCTION/SplineInterpolatedPeaks.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/DATAREDUCTION/SplineInterpolatedPeaks.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DRange.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/DATAREDUCTION/SplinePackage.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/DATAREDUCTION/SplineInterpolatedPeaks.cpp:36: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/DATAREDUCTION/SplineInterpolatedPeaks.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 75%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/SplinePackage.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/SplinePackage.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/SplinePackage.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/DATAREDUCTION/SplinePackage.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/DATAREDUCTION/SplinePackage.cpp [ 75%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/CALIBRATION/InternalCalibration.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/CALIBRATION/InternalCalibration.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/CALIBRATION/InternalCalibration.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/CALIBRATION/InternalCalibration.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/CALIBRATION/InternalCalibration.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/CalibrationData.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/CALIBRATION/InternalCalibration.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/CALIBRATION/InternalCalibration.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/ProgressLogger.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/CALIBRATION/InternalCalibration.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/CalibrationData.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/CALIBRATION/MZTrafoModel.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/CALIBRATION/InternalCalibration.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h: In static member function 'static std::vector > OpenMS::Math::RANSAC::ransac(const std::vector >&, size_t, size_t, double, size_t, bool, int (*)(int))': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:182:32: warning: 'void std::random_shuffle(_RAIter, _RAIter, _Generator&&) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Generator = int (*&)(int)]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 182 | std::random_shuffle(pairs_shuffled.begin(), pairs_shuffled.end(), rng); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/PrecisionWrapper.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_algo.h:4620:5: note: declared here 4620 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:184:32: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 184 | std::random_shuffle(pairs_shuffled.begin(), pairs_shuffled.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/CALIBRATION/MZTrafoModel.h: At global scope: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/CALIBRATION/MZTrafoModel.h:192:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 192 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/CALIBRATION/InternalCalibration.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/stl_tree.h:63: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/CALIBRATION/InternalCalibration.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 75%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/CALIBRATION/MZTrafoModel.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/CALIBRATION/MZTrafoModel.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/CALIBRATION/MZTrafoModel.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/CALIBRATION/MZTrafoModel.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/CALIBRATION/MZTrafoModel.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/CalibrationData.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/CALIBRATION/MZTrafoModel.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/CALIBRATION/MZTrafoModel.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/LogStream.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/CALIBRATION/MZTrafoModel.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/CalibrationData.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/CALIBRATION/MZTrafoModel.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h: In static member function 'static std::vector > OpenMS::Math::RANSAC::ransac(const std::vector >&, size_t, size_t, double, size_t, bool, int (*)(int))': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:182:32: warning: 'void std::random_shuffle(_RAIter, _RAIter, _Generator&&) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Generator = int (*&)(int)]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 182 | std::random_shuffle(pairs_shuffled.begin(), pairs_shuffled.end(), rng); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/LogStream.h:38: /usr/include/c++/13/bits/stl_algo.h:4620:5: note: declared here 4620 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:184:32: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 184 | std::random_shuffle(pairs_shuffled.begin(), pairs_shuffled.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/CALIBRATION/MZTrafoModel.h: At global scope: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/CALIBRATION/MZTrafoModel.h:192:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 192 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h: In instantiation of 'static std::vector > OpenMS::Math::RANSAC::ransac(const std::vector >&, size_t, size_t, double, size_t, bool, int (*)(int)) [with TModelType = OpenMS::Math::RansacModelLinear; size_t = long unsigned int]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:105:22: required from 'static std::vector > OpenMS::Math::RANSAC::ransac(const std::vector >&, const OpenMS::Math::RANSACParam&) [with TModelType = OpenMS::Math::RansacModelLinear]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/CALIBRATION/MZTrafoModel.cpp:205:61: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:182:32: warning: 'void std::random_shuffle(_RAIter, _RAIter, _Generator&&) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Generator = int (*&)(int)]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 182 | std::random_shuffle(pairs_shuffled.begin(), pairs_shuffled.end(), rng); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4620:5: note: declared here 4620 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:182:32: warning: 'void std::random_shuffle(_RAIter, _RAIter, _Generator&&) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Generator = int (*&)(int)]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 182 | std::random_shuffle(pairs_shuffled.begin(), pairs_shuffled.end(), rng); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4620:5: note: declared here 4620 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:182:32: warning: 'void std::random_shuffle(_RAIter, _RAIter, _Generator&&) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Generator = int (*&)(int)]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 182 | std::random_shuffle(pairs_shuffled.begin(), pairs_shuffled.end(), rng); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4620:5: note: declared here 4620 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:184:32: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 184 | std::random_shuffle(pairs_shuffled.begin(), pairs_shuffled.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:184:32: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 184 | std::random_shuffle(pairs_shuffled.begin(), pairs_shuffled.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:184:32: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 184 | std::random_shuffle(pairs_shuffled.begin(), pairs_shuffled.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h: In instantiation of 'static std::vector > OpenMS::Math::RANSAC::ransac(const std::vector >&, size_t, size_t, double, size_t, bool, int (*)(int)) [with TModelType = OpenMS::Math::RansacModelQuadratic; size_t = long unsigned int]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:105:22: required from 'static std::vector > OpenMS::Math::RANSAC::ransac(const std::vector >&, const OpenMS::Math::RANSACParam&) [with TModelType = OpenMS::Math::RansacModelQuadratic]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/CALIBRATION/MZTrafoModel.cpp:250:64: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:182:32: warning: 'void std::random_shuffle(_RAIter, _RAIter, _Generator&&) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Generator = int (*&)(int)]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 182 | std::random_shuffle(pairs_shuffled.begin(), pairs_shuffled.end(), rng); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4620:5: note: declared here 4620 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:182:32: warning: 'void std::random_shuffle(_RAIter, _RAIter, _Generator&&) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Generator = int (*&)(int)]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 182 | std::random_shuffle(pairs_shuffled.begin(), pairs_shuffled.end(), rng); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4620:5: note: declared here 4620 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:182:32: warning: 'void std::random_shuffle(_RAIter, _RAIter, _Generator&&) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Generator = int (*&)(int)]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 182 | std::random_shuffle(pairs_shuffled.begin(), pairs_shuffled.end(), rng); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4620:5: note: declared here 4620 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:184:32: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 184 | std::random_shuffle(pairs_shuffled.begin(), pairs_shuffled.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:184:32: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 184 | std::random_shuffle(pairs_shuffled.begin(), pairs_shuffled.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:184:32: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 184 | std::random_shuffle(pairs_shuffled.begin(), pairs_shuffled.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 75%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/CALIBRATION/PrecursorCorrection.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/CALIBRATION/PrecursorCorrection.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/CALIBRATION/PrecursorCorrection.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/CALIBRATION/PrecursorCorrection.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/CALIBRATION/PrecursorCorrection.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/CALIBRATION/PrecursorCorrection.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/CALIBRATION/PrecursorCorrection.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/CALIBRATION/PrecursorCorrection.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 75%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/CALIBRATION/TOFCalibration.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/CALIBRATION/TOFCalibration.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/CALIBRATION/TOFCalibration.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/CALIBRATION/TOFCalibration.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/CALIBRATION/TOFCalibration.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/CALIBRATION/TOFCalibration.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/CALIBRATION/TOFCalibration.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/stl_tree.h:63, from /usr/include/c++/13/map:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/ProgressLogger.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/CALIBRATION/TOFCalibration.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/CALIBRATION/TOFCalibration.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerCWT.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/CALIBRATION/TOFCalibration.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/OptimizePeakDeconvolution.h:140:40: note: by 'OpenMS::OptimizePeakDeconvolution& OpenMS::OptimizePeakDeconvolution::operator=(const OpenMS::OptimizePeakDeconvolution&)' 140 | inline OptimizePeakDeconvolution & operator=(const OptimizePeakDeconvolution & opt) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerCWT.h:78:23: note: by 'OpenMS::PeakPickerCWT& OpenMS::PeakPickerCWT::operator=(const OpenMS::PeakPickerCWT&)' 78 | class OPENMS_DLLAPI PeakPickerCWT : | ^~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/CALIBRATION/TOFCalibration.h:66:23: note: by 'OpenMS::TOFCalibration& OpenMS::TOFCalibration::operator=(const OpenMS::TOFCalibration&)' 66 | class OPENMS_DLLAPI TOFCalibration : | ^~~~~~~~~~~~~~ [ 75%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/SMOOTHING/GaussFilter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/SMOOTHING/GaussFilter.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/SMOOTHING/GaussFilter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/SMOOTHING/GaussFilter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/SMOOTHING/GaussFilter.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/GaussFilter.h:43, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/SMOOTHING/GaussFilter.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Constants.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/GaussFilter.h:37: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/GaussFilter.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/GaussFilter.h:74:23: note: by 'OpenMS::GaussFilter& OpenMS::GaussFilter::operator=(const OpenMS::GaussFilter&)' 74 | class OPENMS_DLLAPI GaussFilter : | ^~~~~~~~~~~ [ 75%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/SMOOTHING/GaussFilterAlgorithm.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/SMOOTHING/GaussFilterAlgorithm.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/SMOOTHING/GaussFilterAlgorithm.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/SMOOTHING/GaussFilterAlgorithm.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/SMOOTHING/GaussFilterAlgorithm.cpp [ 75%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/SMOOTHING/LowessSmoothing.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/SMOOTHING/LowessSmoothing.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/SMOOTHING/LowessSmoothing.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/SMOOTHING/LowessSmoothing.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/SMOOTHING/LowessSmoothing.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/LowessSmoothing.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/SMOOTHING/LowessSmoothing.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/LowessSmoothing.h:60:23: note: by 'OpenMS::LowessSmoothing& OpenMS::LowessSmoothing::operator=(const OpenMS::LowessSmoothing&)' 60 | class OPENMS_DLLAPI LowessSmoothing : | ^~~~~~~~~~~~~~~ [ 75%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/SMOOTHING/FastLowessSmoothing.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/SMOOTHING/FastLowessSmoothing.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/SMOOTHING/FastLowessSmoothing.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/SMOOTHING/FastLowessSmoothing.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/SMOOTHING/FastLowessSmoothing.cpp [ 75%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/SMOOTHING/SavitzkyGolayFilter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/SMOOTHING/SavitzkyGolayFilter.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/SMOOTHING/SavitzkyGolayFilter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/SMOOTHING/SavitzkyGolayFilter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/SMOOTHING/SavitzkyGolayFilter.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/SavitzkyGolayFilter.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/SMOOTHING/SavitzkyGolayFilter.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/SavitzkyGolayFilter.h:37: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/SavitzkyGolayFilter.h:101:23: note: by 'OpenMS::SavitzkyGolayFilter& OpenMS::SavitzkyGolayFilter::operator=(const OpenMS::SavitzkyGolayFilter&)' 101 | class OPENMS_DLLAPI SavitzkyGolayFilter : | ^~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.cpp [ 77%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMeanIterative.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMeanIterative.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMeanIterative.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMeanIterative.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMeanIterative.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMeanIterative.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMeanIterative.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h: In instantiation of 'class OpenMS::SignalToNoiseEstimator': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMeanIterative.h:70:9: required from 'class OpenMS::SignalToNoiseEstimatorMeanIterative<>' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMeanIterative.cpp:40:41: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h:85:37: note: by 'OpenMS::SignalToNoiseEstimator& OpenMS::SignalToNoiseEstimator::operator=(const OpenMS::SignalToNoiseEstimator&) [with Container = OpenMS::MSSpectrum]' 85 | inline SignalToNoiseEstimator & operator=(const SignalToNoiseEstimator & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMeanIterative.h: In instantiation of 'class OpenMS::SignalToNoiseEstimatorMeanIterative<>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMeanIterative.cpp:40:41: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMeanIterative.h:144:50: note: by 'OpenMS::SignalToNoiseEstimatorMeanIterative& OpenMS::SignalToNoiseEstimatorMeanIterative::operator=(const OpenMS::SignalToNoiseEstimatorMeanIterative&) [with Container = OpenMS::MSSpectrum]' 144 | inline SignalToNoiseEstimatorMeanIterative & operator=(const SignalToNoiseEstimatorMeanIterative & source) | ^~~~~~~~ [ 77%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h: In instantiation of 'class OpenMS::SignalToNoiseEstimator': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:81:9: required from 'class OpenMS::SignalToNoiseEstimatorMedian<>' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.cpp:40:34: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h:85:37: note: by 'OpenMS::SignalToNoiseEstimator& OpenMS::SignalToNoiseEstimator::operator=(const OpenMS::SignalToNoiseEstimator&) [with Container = OpenMS::MSSpectrum]' 85 | inline SignalToNoiseEstimator & operator=(const SignalToNoiseEstimator & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h: In instantiation of 'class OpenMS::SignalToNoiseEstimatorMedian<>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.cpp:40:34: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:153:43: note: by 'OpenMS::SignalToNoiseEstimatorMedian& OpenMS::SignalToNoiseEstimatorMedian::operator=(const OpenMS::SignalToNoiseEstimatorMedian&) [with Container = OpenMS::MSSpectrum]' 153 | inline SignalToNoiseEstimatorMedian & operator=(const SignalToNoiseEstimatorMedian & source) | ^~~~~~~~ [ 77%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedianRapid.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedianRapid.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedianRapid.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedianRapid.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedianRapid.cpp [ 77%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/ID/IDFilter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/FILTERING/ID/IDFilter.cpp.o -MF CMakeFiles/OpenMS.dir/source/FILTERING/ID/IDFilter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/FILTERING/ID/IDFilter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/ID/IDFilter.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/ID/IDFilter.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/stl_tree.h:63, from /usr/include/c++/13/map:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/EmpiricalFormula.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/AASequence.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/ProteaseDigestion.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ID/IdentificationData.h:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:46: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/ID/IDFilter.cpp: In static member function 'static std::map > OpenMS::IDFilter::extractUnassignedProteins(OpenMS::ConsensusMap&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/ID/IDFilter.cpp:274:54: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMatchingAccessionUnordered]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 274 | moveMatchingItems(prot_it->getHits(), std::not1(acc_filter), target.first->second); | ~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/ID/IDFilter.cpp: In lambda function: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/ID/IDFilter.cpp:384:28: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMatchingAccessionUnordered]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 384 | not1(acc_filter)); | ~~~~^~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/ID/IDFilter.cpp: In static member function 'static void OpenMS::IDFilter::updateProteinReferences(std::vector&, const std::vector&, bool)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/ID/IDFilter.cpp:432:28: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMatchingAccessionUnordered]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 432 | not1(acc_filter)); | ~~~~^~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/ID/IDFilter.cpp: In static member function 'static void OpenMS::IDFilter::removeUngroupedProteins(const std::vector&, std::vector&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/ID/IDFilter.cpp:498:59: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMatchingAccessionUnordered]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 498 | std::remove_if(hits.begin(), hits.end(), std::not1(HasMatchingAccessionUnordered(valid_accessions))), | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::FilterPeptideEvidences(EvidenceFilter&, std::vector&) [with EvidenceFilter = DigestionFilter]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:485:68: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:726:35: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::DigestionFilter]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 726 | std::not1(filter)); | ~~~~~~~~~^~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::moveMatchingItems(Container&, const Predicate&, Container&) [with Container = std::vector; Predicate = std::unary_negate >]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/ID/IDFilter.cpp:274:24: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:550:73: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = unary_negate >]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 550 | auto part = std::partition(items.begin(), items.end(), std::not1(pred)); | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasMatchingAccessionUnordered]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/ID/IDFilter.cpp:311:24: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMatchingAccessionUnordered]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasMinPeptideLength]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/ID/IDFilter.cpp:569:26: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMinPeptideLength]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasMinCharge]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/ID/IDFilter.cpp:592:24: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMinCharge]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasRTInRange]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/ID/IDFilter.cpp:611:22: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasRTInRange]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasMZInRange]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/ID/IDFilter.cpp:619:22: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMZInRange]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasLowMZError]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/ID/IDFilter.cpp:630:24: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasLowMZError]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasMetaValue]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/ID/IDFilter.cpp:647:24: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMetaValue]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasMaxMetaValue]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/ID/IDFilter.cpp:650:24: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMaxMetaValue]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasMatchingModification]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/ID/IDFilter.cpp:684:24: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMatchingModification]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasMatchingSequence]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/FILTERING/ID/IDFilter.cpp:714:24: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMatchingSequence]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasGoodScore]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:830:26: required from 'static void OpenMS::IDFilter::filterHitsByScore(std::vector&, double) [with IdentificationType = OpenMS::ProteinIdentification]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1116:24: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasGoodScore]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasGoodScore]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:830:26: required from 'static void OpenMS::IDFilter::filterHitsByScore(std::vector&, double) [with IdentificationType = OpenMS::PeptideIdentification]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1125:26: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasGoodScore]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasMatchingAccession]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:965:26: required from 'static void OpenMS::IDFilter::keepHitsMatchingProteins(std::vector&, const std::set&) [with IdentificationType = OpenMS::ProteinIdentification]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1332:31: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMatchingAccession]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h: In instantiation of 'static void OpenMS::IDFilter::keepMatchingItems(Container&, const Predicate&) [with Container = std::vector; Predicate = HasMatchingAccession]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:965:26: required from 'static void OpenMS::IDFilter::keepHitsMatchingProteins(std::vector&, const std::set&) [with IdentificationType = OpenMS::PeptideIdentification]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:1342:35: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID/IDFilter.h:542:71: warning: 'constexpr std::unary_negate<_Predicate> std::not1(const _Predicate&) [with _Predicate = OpenMS::IDFilter::HasMatchingAccession]' is deprecated: use 'std::not_fn' instead [-Wdeprecated-declarations] 542 | items.erase(std::remove_if(items.begin(), items.end(), std::not1(pred)), | ~~~~~~~~~^~~~~~ /usr/include/c++/13/bits/stl_function.h:1046:5: note: declared here 1046 | not1(const _Predicate& __pred) | ^~~~ [ 77%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/BaseModel.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/BaseModel.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/BaseModel.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/BaseModel.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/BaseModel.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/DPeak.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/BaseModel.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/DPeak.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel_impl.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/BaseModel.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussModel.h:67:26: note: by 'virtual OpenMS::GaussModel& OpenMS::GaussModel::operator=(const OpenMS::GaussModel&)' 67 | virtual GaussModel & operator=(const GaussModel & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel_impl.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BiGaussModel.h:67:28: note: by 'virtual OpenMS::BiGaussModel& OpenMS::BiGaussModel::operator=(const OpenMS::BiGaussModel&)' 67 | virtual BiGaussModel & operator=(const BiGaussModel & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel_impl.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeModel.h:78:28: note: by 'virtual OpenMS::IsotopeModel& OpenMS::IsotopeModel::operator=(const OpenMS::IsotopeModel&)' 78 | virtual IsotopeModel & operator=(const IsotopeModel & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel_impl.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeModel.h:75:36: note: by 'virtual OpenMS::ExtendedIsotopeModel& OpenMS::ExtendedIsotopeModel::operator=(const OpenMS::ExtendedIsotopeModel&)' 75 | virtual ExtendedIsotopeModel & operator=(const ExtendedIsotopeModel & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<2>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ProductModel.h:65:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 2]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 2]' was hidden [-Woverloaded-virtual=] In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel_impl.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ProductModel.h:124:28: note: by 'virtual OpenMS::ProductModel<2>& OpenMS::ProductModel<2>::operator=(const OpenMS::ProductModel<2>&)' 124 | virtual ProductModel & operator=(const ProductModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel_impl.h:45: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgModel.h:68:24: note: by 'virtual OpenMS::EmgModel& OpenMS::EmgModel::operator=(const OpenMS::EmgModel&)' 68 | virtual EmgModel & operator=(const EmgModel & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel_impl.h:46: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/EGHModel.h:74:24: note: by 'virtual OpenMS::EGHModel& OpenMS::EGHModel::operator=(const OpenMS::EGHModel&)' 74 | virtual EGHModel & operator=(const EGHModel & source); | ^~~~~~~~ [ 77%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/BiGaussFitter1D.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/BiGaussFitter1D.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/BiGaussFitter1D.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/BiGaussFitter1D.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/BiGaussFitter1D.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BiGaussFitter1D.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/BiGaussFitter1D.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/IsotopeCluster.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: note: by 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' 91 | virtual Fitter1D& operator=(const Fitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: warning: 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' was hidden [-Woverloaded-virtual=] 91 | virtual Fitter1D& operator=(const Fitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h:71:33: note: by 'virtual OpenMS::MaxLikeliFitter1D& OpenMS::MaxLikeliFitter1D::operator=(const OpenMS::MaxLikeliFitter1D&)' 71 | virtual MaxLikeliFitter1D & operator=(const MaxLikeliFitter1D & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h:71:33: warning: 'virtual OpenMS::MaxLikeliFitter1D& OpenMS::MaxLikeliFitter1D::operator=(const OpenMS::MaxLikeliFitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BiGaussFitter1D.h:64:31: note: by 'virtual OpenMS::BiGaussFitter1D& OpenMS::BiGaussFitter1D::operator=(const OpenMS::BiGaussFitter1D&)' 64 | virtual BiGaussFitter1D & operator=(const BiGaussFitter1D & source); | ^~~~~~~~ [ 77%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/BiGaussModel.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/BiGaussModel.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/BiGaussModel.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/BiGaussModel.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/BiGaussModel.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/DPeak.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BiGaussModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/BiGaussModel.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/DPeak.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BiGaussModel.h:67:28: note: by 'virtual OpenMS::BiGaussModel& OpenMS::BiGaussModel::operator=(const OpenMS::BiGaussModel&)' 67 | virtual BiGaussModel & operator=(const BiGaussModel & source); | ^~~~~~~~ [ 77%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/EGHTraceFitter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/EGHTraceFitter.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/EGHTraceFitter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/EGHTraceFitter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/EGHTraceFitter.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPickedHelperStructs.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EGHTraceFitter.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/EGHTraceFitter.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPickedHelperStructs.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h:87:26: note: by 'virtual OpenMS::TraceFitter& OpenMS::TraceFitter::operator=(const OpenMS::TraceFitter&)' 87 | virtual TraceFitter& operator=(const TraceFitter& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h:87:26: warning: 'virtual OpenMS::TraceFitter& OpenMS::TraceFitter::operator=(const OpenMS::TraceFitter&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EGHTraceFitter.h:82:21: note: by 'OpenMS::EGHTraceFitter& OpenMS::EGHTraceFitter::operator=(const OpenMS::EGHTraceFitter&)' 82 | EGHTraceFitter& operator=(const EGHTraceFitter& source); | ^~~~~~~~ [ 77%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/ElutionModelFitter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/ElutionModelFitter.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/ElutionModelFitter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/ElutionModelFitter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/ElutionModelFitter.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ElutionModelFitter.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/ElutionModelFitter.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ElutionModelFitter.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ElutionModelFitter.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h:87:26: note: by 'virtual OpenMS::TraceFitter& OpenMS::TraceFitter::operator=(const OpenMS::TraceFitter&)' 87 | virtual TraceFitter& operator=(const TraceFitter& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ElutionModelFitter.h:49:23: note: by 'OpenMS::ElutionModelFitter& OpenMS::ElutionModelFitter::operator=(const OpenMS::ElutionModelFitter&)' 49 | class OPENMS_DLLAPI ElutionModelFitter : | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h:87:26: warning: 'virtual OpenMS::TraceFitter& OpenMS::TraceFitter::operator=(const OpenMS::TraceFitter&)' was hidden [-Woverloaded-virtual=] 87 | virtual TraceFitter& operator=(const TraceFitter& source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/ElutionModelFitter.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EGHTraceFitter.h:82:21: note: by 'OpenMS::EGHTraceFitter& OpenMS::EGHTraceFitter::operator=(const OpenMS::EGHTraceFitter&)' 82 | EGHTraceFitter& operator=(const EGHTraceFitter& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h:87:26: warning: 'virtual OpenMS::TraceFitter& OpenMS::TraceFitter::operator=(const OpenMS::TraceFitter&)' was hidden [-Woverloaded-virtual=] 87 | virtual TraceFitter& operator=(const TraceFitter& source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/ElutionModelFitter.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussTraceFitter.h:57:23: note: by 'OpenMS::GaussTraceFitter& OpenMS::GaussTraceFitter::operator=(const OpenMS::GaussTraceFitter&)' 57 | GaussTraceFitter& operator=(const GaussTraceFitter& source); | ^~~~~~~~ [ 77%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/IsotopeCluster.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: note: by 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' 91 | virtual Fitter1D& operator=(const Fitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: warning: 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: note: by 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' 101 | virtual LevMarqFitter1D & operator=(const LevMarqFitter1D & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: warning: 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h:61:26: note: by 'virtual OpenMS::EmgFitter1D& OpenMS::EmgFitter1D::operator=(const OpenMS::EmgFitter1D&)' 61 | virtual EmgFitter1D& operator=(const EmgFitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ [ 77%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/EmgModel.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/EmgModel.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/EmgModel.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/EmgModel.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/EmgModel.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/DPeak.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/EmgModel.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/DPeak.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgModel.h:68:24: note: by 'virtual OpenMS::EmgModel& OpenMS::EmgModel::operator=(const OpenMS::EmgModel&)' 68 | virtual EmgModel & operator=(const EmgModel & source); | ^~~~~~~~ [ 77%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.cpp [ 77%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeFitter1D.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeFitter1D.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeFitter1D.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeFitter1D.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeFitter1D.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeFitter1D.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/IsotopeCluster.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: note: by 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' 91 | virtual Fitter1D& operator=(const Fitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: warning: 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' was hidden [-Woverloaded-virtual=] 91 | virtual Fitter1D& operator=(const Fitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h:71:33: note: by 'virtual OpenMS::MaxLikeliFitter1D& OpenMS::MaxLikeliFitter1D::operator=(const OpenMS::MaxLikeliFitter1D&)' 71 | virtual MaxLikeliFitter1D & operator=(const MaxLikeliFitter1D & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h:71:33: warning: 'virtual OpenMS::MaxLikeliFitter1D& OpenMS::MaxLikeliFitter1D::operator=(const OpenMS::MaxLikeliFitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeFitter1D.h:61:39: note: by 'virtual OpenMS::ExtendedIsotopeFitter1D& OpenMS::ExtendedIsotopeFitter1D::operator=(const OpenMS::ExtendedIsotopeFitter1D&)' 61 | virtual ExtendedIsotopeFitter1D & operator=(const ExtendedIsotopeFitter1D & source); | ^~~~~~~~ [ 79%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeModel.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeModel.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeModel.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeModel.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeModel.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/DPeak.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeModel.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/DPeak.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeModel.h:75:36: note: by 'virtual OpenMS::ExtendedIsotopeModel& OpenMS::ExtendedIsotopeModel::operator=(const OpenMS::ExtendedIsotopeModel&)' 75 | virtual ExtendedIsotopeModel & operator=(const ExtendedIsotopeModel & source); | ^~~~~~~~ [ 79%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/IsotopeCluster.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderDefs.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.h:37: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h:150:29: note: by 'OpenMS::FeatureFinderAlgorithm& OpenMS::FeatureFinderAlgorithm::operator=(const OpenMS::FeatureFinderAlgorithm&)' 150 | FeatureFinderAlgorithm& operator=(const FeatureFinderAlgorithm&); | ^~~~~~~~ [ 79%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h:150:29: note: by 'OpenMS::FeatureFinderAlgorithm& OpenMS::FeatureFinderAlgorithm::operator=(const OpenMS::FeatureFinderAlgorithm&)' 150 | FeatureFinderAlgorithm& operator=(const FeatureFinderAlgorithm&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmIsotopeWavelet.h:59:23: note: by 'OpenMS::FeatureFinderAlgorithmIsotopeWavelet& OpenMS::FeatureFinderAlgorithmIsotopeWavelet::operator=(const OpenMS::FeatureFinderAlgorithmIsotopeWavelet&)' 59 | class OPENMS_DLLAPI FeatureFinderAlgorithmIsotopeWavelet : | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmMRM.h:59:23: note: by 'OpenMS::FeatureFinderAlgorithmMRM::operator=' 59 | class OPENMS_DLLAPI FeatureFinderAlgorithmMRM : | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPicked.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h:87:26: note: by 'virtual OpenMS::TraceFitter& OpenMS::TraceFitter::operator=(const OpenMS::TraceFitter&)' 87 | virtual TraceFitter& operator=(const TraceFitter& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPicked.h:309:35: note: by 'OpenMS::FeatureFinderAlgorithmPicked& OpenMS::FeatureFinderAlgorithmPicked::operator=(const OpenMS::FeatureFinderAlgorithmPicked&)' 309 | FeatureFinderAlgorithmPicked& operator=(const FeatureFinderAlgorithmPicked&); | ^~~~~~~~ [ 79%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmIsotopeWavelet.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmIsotopeWavelet.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmIsotopeWavelet.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmIsotopeWavelet.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmIsotopeWavelet.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmIsotopeWavelet.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmIsotopeWavelet.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h:150:29: note: by 'OpenMS::FeatureFinderAlgorithm& OpenMS::FeatureFinderAlgorithm::operator=(const OpenMS::FeatureFinderAlgorithm&)' 150 | FeatureFinderAlgorithm& operator=(const FeatureFinderAlgorithm&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmIsotopeWavelet.h:59:23: note: by 'OpenMS::FeatureFinderAlgorithmIsotopeWavelet& OpenMS::FeatureFinderAlgorithmIsotopeWavelet::operator=(const OpenMS::FeatureFinderAlgorithmIsotopeWavelet&)' 59 | class OPENMS_DLLAPI FeatureFinderAlgorithmIsotopeWavelet : | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmIsotopeWavelet.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeWaveletTransform.h: In instantiation of 'void OpenMS::IsotopeWaveletTransform::identifyCharge(const OpenMS::MSSpectrum&, const OpenMS::MSSpectrum&, OpenMS::UInt, OpenMS::UInt, double, bool) [with PeakType = OpenMS::Peak1D; OpenMS::UInt = unsigned int]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmIsotopeWavelet.cpp:224:30: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeWaveletTransform.h:783:15: warning: implicitly-declared 'OpenMS::ConstRefVector::ConstRefVectorIterator& OpenMS::ConstRefVector::ConstRefVectorIterator::operator=(const OpenMS::ConstRefVector::ConstRefVectorIterator&)' is deprecated [-Wdeprecated-copy] 783 | for (iter = c_sorted_candidate.end() - 1; iter != c_sorted_candidate.begin(); --iter) | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeWaveletTransform.h:45: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ConstRefVector.h:260:7: note: because 'OpenMS::ConstRefVector::ConstRefVectorIterator' has user-provided 'OpenMS::ConstRefVector::ConstRefVectorIterator::ConstRefVectorIterator(const OpenMS::ConstRefVector::ConstRefVectorIterator&) [with ValueT = const OpenMS::Peak1D; ContainerT = OpenMS::MSSpectrum]' 260 | ConstRefVectorIterator(const ConstRefVectorIterator& it) : | ^~~~~~~~~~~~~~~~~~~~~~ [ 79%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmMRM.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmMRM.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmMRM.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmMRM.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmMRM.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmMRM.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmMRM.cpp:34: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h:150:29: note: by 'OpenMS::FeatureFinderAlgorithm& OpenMS::FeatureFinderAlgorithm::operator=(const OpenMS::FeatureFinderAlgorithm&)' 150 | FeatureFinderAlgorithm& operator=(const FeatureFinderAlgorithm&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmMRM.h:59:23: note: by 'OpenMS::FeatureFinderAlgorithmMRM::operator=' 59 | class OPENMS_DLLAPI FeatureFinderAlgorithmMRM : | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ProductModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmMRM.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ProductModel.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeModel.h:78:28: note: by 'virtual OpenMS::IsotopeModel& OpenMS::IsotopeModel::operator=(const OpenMS::IsotopeModel&)' 78 | virtual IsotopeModel & operator=(const IsotopeModel & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<2>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ProductModel.h:65:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 2]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 2]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ProductModel.h:124:28: note: by 'virtual OpenMS::ProductModel<2>& OpenMS::ProductModel<2>::operator=(const OpenMS::ProductModel<2>&)' 124 | virtual ProductModel & operator=(const ProductModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmMRM.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: note: by 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' 91 | virtual Fitter1D& operator=(const Fitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: warning: 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: note: by 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' 101 | virtual LevMarqFitter1D & operator=(const LevMarqFitter1D & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: warning: 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h:61:26: note: by 'virtual OpenMS::EmgFitter1D& OpenMS::EmgFitter1D::operator=(const OpenMS::EmgFitter1D&)' 61 | virtual EmgFitter1D& operator=(const EmgFitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmMRM.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgModel.h:68:24: note: by 'virtual OpenMS::EmgModel& OpenMS::EmgModel::operator=(const OpenMS::EmgModel&)' 68 | virtual EmgModel & operator=(const EmgModel & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmMRM.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/GaussFilter.h:74:23: note: by 'OpenMS::GaussFilter& OpenMS::GaussFilter::operator=(const OpenMS::GaussFilter&)' 74 | class OPENMS_DLLAPI GaussFilter : | ^~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmMRM.cpp:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResampler.h:61:23: note: by 'OpenMS::LinearResampler& OpenMS::LinearResampler::operator=(const OpenMS::LinearResampler&)' 61 | class OPENMS_DLLAPI LinearResampler : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h: In instantiation of 'class OpenMS::SignalToNoiseEstimator': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMeanIterative.h:70:9: required from 'class OpenMS::SignalToNoiseEstimatorMeanIterative' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmMRM.cpp:77:55: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMeanIterative.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmMRM.cpp:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h:85:37: note: by 'OpenMS::SignalToNoiseEstimator& OpenMS::SignalToNoiseEstimator::operator=(const OpenMS::SignalToNoiseEstimator&) [with Container = OpenMS::MSSpectrum]' 85 | inline SignalToNoiseEstimator & operator=(const SignalToNoiseEstimator & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMeanIterative.h: In instantiation of 'class OpenMS::SignalToNoiseEstimatorMeanIterative': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmMRM.cpp:77:55: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMeanIterative.h:144:50: note: by 'OpenMS::SignalToNoiseEstimatorMeanIterative& OpenMS::SignalToNoiseEstimatorMeanIterative::operator=(const OpenMS::SignalToNoiseEstimatorMeanIterative&) [with Container = OpenMS::MSSpectrum]' 144 | inline SignalToNoiseEstimatorMeanIterative & operator=(const SignalToNoiseEstimatorMeanIterative & source) | ^~~~~~~~ [ 79%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPicked.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPicked.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPicked.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPicked.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPicked.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPicked.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPicked.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h:150:29: note: by 'OpenMS::FeatureFinderAlgorithm& OpenMS::FeatureFinderAlgorithm::operator=(const OpenMS::FeatureFinderAlgorithm&)' 150 | FeatureFinderAlgorithm& operator=(const FeatureFinderAlgorithm&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPicked.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h:87:26: note: by 'virtual OpenMS::TraceFitter& OpenMS::TraceFitter::operator=(const OpenMS::TraceFitter&)' 87 | virtual TraceFitter& operator=(const TraceFitter& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPicked.h:309:35: note: by 'OpenMS::FeatureFinderAlgorithmPicked& OpenMS::FeatureFinderAlgorithmPicked::operator=(const OpenMS::FeatureFinderAlgorithmPicked&)' 309 | FeatureFinderAlgorithmPicked& operator=(const FeatureFinderAlgorithmPicked&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h:87:26: warning: 'virtual OpenMS::TraceFitter& OpenMS::TraceFitter::operator=(const OpenMS::TraceFitter&)' was hidden [-Woverloaded-virtual=] 87 | virtual TraceFitter& operator=(const TraceFitter& source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPicked.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EGHTraceFitter.h:82:21: note: by 'OpenMS::EGHTraceFitter& OpenMS::EGHTraceFitter::operator=(const OpenMS::EGHTraceFitter&)' 82 | EGHTraceFitter& operator=(const EGHTraceFitter& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h:87:26: warning: 'virtual OpenMS::TraceFitter& OpenMS::TraceFitter::operator=(const OpenMS::TraceFitter&)' was hidden [-Woverloaded-virtual=] 87 | virtual TraceFitter& operator=(const TraceFitter& source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPicked.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussTraceFitter.h:57:23: note: by 'OpenMS::GaussTraceFitter& OpenMS::GaussTraceFitter::operator=(const OpenMS::GaussTraceFitter&)' 57 | GaussTraceFitter& operator=(const GaussTraceFitter& source); | ^~~~~~~~ [ 79%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPickedHelperStructs.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPickedHelperStructs.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPickedHelperStructs.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPickedHelperStructs.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPickedHelperStructs.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPickedHelperStructs.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 79%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderIdentificationAlgorithm.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderIdentificationAlgorithm.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderIdentificationAlgorithm.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderIdentificationAlgorithm.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderIdentificationAlgorithm.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderIdentificationAlgorithm.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderIdentificationAlgorithm.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperimentHelper.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathScoring.h:46, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderIdentificationAlgorithm.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:157:17: note: by 'OpenMS::DIAScoring& OpenMS::DIAScoring::operator=(const OpenMS::DIAScoring&)' 157 | DIAScoring& operator=(const DIAScoring& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SONARScoring.h:83:19: note: by 'OpenMS::SONARScoring& OpenMS::SONARScoring::operator=(const OpenMS::SONARScoring&)' 83 | SONARScoring& operator=(const SONARScoring& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: note: by 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' 91 | virtual Fitter1D& operator=(const Fitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: warning: 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: note: by 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' 101 | virtual LevMarqFitter1D & operator=(const LevMarqFitter1D & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: warning: 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h:61:26: note: by 'virtual OpenMS::EmgFitter1D& OpenMS::EmgFitter1D::operator=(const OpenMS::EmgFitter1D&)' 61 | virtual EmgFitter1D& operator=(const EmgFitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgModel.h:68:24: note: by 'virtual OpenMS::EmgModel& OpenMS::EmgModel::operator=(const OpenMS::EmgModel&)' 68 | virtual EmgModel & operator=(const EmgModel & source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/GaussFilter.h:43, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/GaussFilter.h:74:23: note: by 'OpenMS::GaussFilter& OpenMS::GaussFilter::operator=(const OpenMS::GaussFilter&)' 74 | class OPENMS_DLLAPI GaussFilter : | ^~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:93:23: note: by 'OpenMS::MRMFeatureFinderScoring& OpenMS::MRMFeatureFinderScoring::operator=(const OpenMS::MRMFeatureFinderScoring&)' 93 | class OPENMS_DLLAPI MRMFeatureFinderScoring : | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderIdentificationAlgorithm.h:56:21: note: by 'OpenMS::FeatureFinderIdentificationAlgorithm::operator=' 56 | class OPENMS_DLLAPI FeatureFinderIdentificationAlgorithm : | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EGHTraceFitter.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderIdentificationAlgorithm.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h:87:26: note: by 'virtual OpenMS::TraceFitter& OpenMS::TraceFitter::operator=(const OpenMS::TraceFitter&)' 87 | virtual TraceFitter& operator=(const TraceFitter& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h:87:26: warning: 'virtual OpenMS::TraceFitter& OpenMS::TraceFitter::operator=(const OpenMS::TraceFitter&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EGHTraceFitter.h:82:21: note: by 'OpenMS::EGHTraceFitter& OpenMS::EGHTraceFitter::operator=(const OpenMS::EGHTraceFitter&)' 82 | EGHTraceFitter& operator=(const EGHTraceFitter& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderIdentificationAlgorithm.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ElutionModelFitter.h:49:23: note: by 'OpenMS::ElutionModelFitter& OpenMS::ElutionModelFitter::operator=(const OpenMS::ElutionModelFitter&)' 49 | class OPENMS_DLLAPI ElutionModelFitter : | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h:87:26: warning: 'virtual OpenMS::TraceFitter& OpenMS::TraceFitter::operator=(const OpenMS::TraceFitter&)' was hidden [-Woverloaded-virtual=] 87 | virtual TraceFitter& operator=(const TraceFitter& source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderIdentificationAlgorithm.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussTraceFitter.h:57:23: note: by 'OpenMS::GaussTraceFitter& OpenMS::GaussTraceFitter::operator=(const OpenMS::GaussTraceFitter&)' 57 | GaussTraceFitter& operator=(const GaussTraceFitter& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderIdentificationAlgorithm.cpp:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/SVM/SimpleSVM.h:65:23: note: by 'OpenMS::SimpleSVM& OpenMS::SimpleSVM::operator=(const OpenMS::SimpleSVM&)' 65 | class OPENMS_DLLAPI SimpleSVM : | ^~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmIdentification.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderIdentificationAlgorithm.cpp:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmIdentification.h:335:42: note: by 'OpenMS::MapAlignmentAlgorithmIdentification& OpenMS::MapAlignmentAlgorithmIdentification::operator=(const OpenMS::MapAlignmentAlgorithmIdentification&)' 335 | MapAlignmentAlgorithmIdentification& operator=(const MapAlignmentAlgorithmIdentification&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderIdentificationAlgorithm.cpp: In member function 'void OpenMS::FeatureFinderIdentificationAlgorithm::getRandomSample_(std::map&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderIdentificationAlgorithm.cpp:1309:19: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 1309 | random_shuffle(selection.begin(), selection.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/EmpiricalFormula.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/AASequence.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperimentHelper.h:44: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 79%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderMultiplexAlgorithm.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderMultiplexAlgorithm.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderMultiplexAlgorithm.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderMultiplexAlgorithm.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderMultiplexAlgorithm.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderMultiplexAlgorithm.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderMultiplexAlgorithm.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderMultiplexAlgorithm.h:37: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderMultiplexAlgorithm.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderMultiplexAlgorithm.h:56:21: note: by 'OpenMS::FeatureFinderMultiplexAlgorithm::operator=' 56 | class OPENMS_DLLAPI FeatureFinderMultiplexAlgorithm : | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderMultiplexAlgorithm.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexDeltaMassesGenerator.h:60:23: note: by 'OpenMS::MultiplexDeltaMassesGenerator::operator=' 60 | class OPENMS_DLLAPI MultiplexDeltaMassesGenerator : | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringCentroided.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderMultiplexAlgorithm.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:73:23: note: by 'OpenMS::PeakPickerHiRes& OpenMS::PeakPickerHiRes::operator=(const OpenMS::PeakPickerHiRes&)' 73 | class OPENMS_DLLAPI PeakPickerHiRes : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakIntegrator.h:44, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderMultiplexAlgorithm.cpp:45: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/EmgGradientDescent.h:64:23: note: by 'OpenMS::EmgGradientDescent& OpenMS::EmgGradientDescent::operator=(const OpenMS::EmgGradientDescent&)' 64 | class OPENMS_DLLAPI EmgGradientDescent : | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakIntegrator.h:72:23: note: by 'OpenMS::PeakIntegrator& OpenMS::PeakIntegrator::operator=(const OpenMS::PeakIntegrator&)' 72 | class OPENMS_DLLAPI PeakIntegrator : | ^~~~~~~~~~~~~~ [ 79%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/IsotopeCluster.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: note: by 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' 91 | virtual Fitter1D& operator=(const Fitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussFitter1D.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: warning: 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' was hidden [-Woverloaded-virtual=] 91 | virtual Fitter1D& operator=(const Fitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h:71:33: note: by 'virtual OpenMS::MaxLikeliFitter1D& OpenMS::MaxLikeliFitter1D::operator=(const OpenMS::MaxLikeliFitter1D&)' 71 | virtual MaxLikeliFitter1D & operator=(const MaxLikeliFitter1D & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h:71:33: warning: 'virtual OpenMS::MaxLikeliFitter1D& OpenMS::MaxLikeliFitter1D::operator=(const OpenMS::MaxLikeliFitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussFitter1D.h:62:29: note: by 'virtual OpenMS::GaussFitter1D& OpenMS::GaussFitter1D::operator=(const OpenMS::GaussFitter1D&)' 62 | virtual GaussFitter1D & operator=(const GaussFitter1D & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h:71:33: warning: 'virtual OpenMS::MaxLikeliFitter1D& OpenMS::MaxLikeliFitter1D::operator=(const OpenMS::MaxLikeliFitter1D&)' was hidden [-Woverloaded-virtual=] 71 | virtual MaxLikeliFitter1D & operator=(const MaxLikeliFitter1D & source) | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BiGaussFitter1D.h:64:31: note: by 'virtual OpenMS::BiGaussFitter1D& OpenMS::BiGaussFitter1D::operator=(const OpenMS::BiGaussFitter1D&)' 64 | virtual BiGaussFitter1D & operator=(const BiGaussFitter1D & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h:71:33: warning: 'virtual OpenMS::MaxLikeliFitter1D& OpenMS::MaxLikeliFitter1D::operator=(const OpenMS::MaxLikeliFitter1D&)' was hidden [-Woverloaded-virtual=] 71 | virtual MaxLikeliFitter1D & operator=(const MaxLikeliFitter1D & source) | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeFitter1D.h:61:31: note: by 'virtual OpenMS::IsotopeFitter1D& OpenMS::IsotopeFitter1D::operator=(const OpenMS::IsotopeFitter1D&)' 61 | virtual IsotopeFitter1D & operator=(const IsotopeFitter1D & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h:71:33: warning: 'virtual OpenMS::MaxLikeliFitter1D& OpenMS::MaxLikeliFitter1D::operator=(const OpenMS::MaxLikeliFitter1D&)' was hidden [-Woverloaded-virtual=] 71 | virtual MaxLikeliFitter1D & operator=(const MaxLikeliFitter1D & source) | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.cpp:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeFitter1D.h:61:39: note: by 'virtual OpenMS::ExtendedIsotopeFitter1D& OpenMS::ExtendedIsotopeFitter1D::operator=(const OpenMS::ExtendedIsotopeFitter1D&)' 61 | virtual ExtendedIsotopeFitter1D & operator=(const ExtendedIsotopeFitter1D & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: warning: 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' was hidden [-Woverloaded-virtual=] 91 | virtual Fitter1D& operator=(const Fitter1D& source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.cpp:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: note: by 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' 101 | virtual LevMarqFitter1D & operator=(const LevMarqFitter1D & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: warning: 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h:61:26: note: by 'virtual OpenMS::EmgFitter1D& OpenMS::EmgFitter1D::operator=(const OpenMS::EmgFitter1D&)' 61 | virtual EmgFitter1D& operator=(const EmgFitter1D& source); | ^~~~~~~~ [ 79%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/GaussFitter1D.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/GaussFitter1D.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/GaussFitter1D.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/GaussFitter1D.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/GaussFitter1D.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussFitter1D.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/GaussFitter1D.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/IsotopeCluster.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: note: by 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' 91 | virtual Fitter1D& operator=(const Fitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: warning: 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' was hidden [-Woverloaded-virtual=] 91 | virtual Fitter1D& operator=(const Fitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h:71:33: note: by 'virtual OpenMS::MaxLikeliFitter1D& OpenMS::MaxLikeliFitter1D::operator=(const OpenMS::MaxLikeliFitter1D&)' 71 | virtual MaxLikeliFitter1D & operator=(const MaxLikeliFitter1D & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h:71:33: warning: 'virtual OpenMS::MaxLikeliFitter1D& OpenMS::MaxLikeliFitter1D::operator=(const OpenMS::MaxLikeliFitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussFitter1D.h:62:29: note: by 'virtual OpenMS::GaussFitter1D& OpenMS::GaussFitter1D::operator=(const OpenMS::GaussFitter1D&)' 62 | virtual GaussFitter1D & operator=(const GaussFitter1D & source); | ^~~~~~~~ [ 79%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/GaussModel.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/GaussModel.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/GaussModel.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/GaussModel.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/GaussModel.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/DPeak.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/GaussModel.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/DPeak.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussModel.h:67:26: note: by 'virtual OpenMS::GaussModel& OpenMS::GaussModel::operator=(const OpenMS::GaussModel&)' 67 | virtual GaussModel & operator=(const GaussModel & source); | ^~~~~~~~ [ 79%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/GaussTraceFitter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/GaussTraceFitter.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/GaussTraceFitter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/GaussTraceFitter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/GaussTraceFitter.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPickedHelperStructs.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussTraceFitter.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/GaussTraceFitter.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPickedHelperStructs.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h:87:26: note: by 'virtual OpenMS::TraceFitter& OpenMS::TraceFitter::operator=(const OpenMS::TraceFitter&)' 87 | virtual TraceFitter& operator=(const TraceFitter& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h:87:26: warning: 'virtual OpenMS::TraceFitter& OpenMS::TraceFitter::operator=(const OpenMS::TraceFitter&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussTraceFitter.h:57:23: note: by 'OpenMS::GaussTraceFitter& OpenMS::GaussTraceFitter::operator=(const OpenMS::GaussTraceFitter&)' 57 | GaussTraceFitter& operator=(const GaussTraceFitter& source); | ^~~~~~~~ [ 79%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.cpp [ 81%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeFitter1D.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeFitter1D.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeFitter1D.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeFitter1D.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeFitter1D.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeFitter1D.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/IsotopeCluster.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: note: by 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' 91 | virtual Fitter1D& operator=(const Fitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: warning: 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' was hidden [-Woverloaded-virtual=] 91 | virtual Fitter1D& operator=(const Fitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h:71:33: note: by 'virtual OpenMS::MaxLikeliFitter1D& OpenMS::MaxLikeliFitter1D::operator=(const OpenMS::MaxLikeliFitter1D&)' 71 | virtual MaxLikeliFitter1D & operator=(const MaxLikeliFitter1D & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h:71:33: warning: 'virtual OpenMS::MaxLikeliFitter1D& OpenMS::MaxLikeliFitter1D::operator=(const OpenMS::MaxLikeliFitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeFitter1D.h:61:31: note: by 'virtual OpenMS::IsotopeFitter1D& OpenMS::IsotopeFitter1D::operator=(const OpenMS::IsotopeFitter1D&)' 61 | virtual IsotopeFitter1D & operator=(const IsotopeFitter1D & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeFitter1D.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeModel.h:78:28: note: by 'virtual OpenMS::IsotopeModel& OpenMS::IsotopeModel::operator=(const OpenMS::IsotopeModel&)' 78 | virtual IsotopeModel & operator=(const IsotopeModel & source); | ^~~~~~~~ [ 81%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeModel.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeModel.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeModel.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeModel.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeModel.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/DPeak.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeModel.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/streambuf:43, from /usr/include/c++/13/bits/streambuf_iterator.h:35, from /usr/include/c++/13/iterator:66, from /usr/include/boost/iterator/iterator_traits.hpp:10, from /usr/include/boost/range/iterator_range_core.hpp:26, from /usr/include/boost/lexical_cast.hpp:48, from /usr/include/boost/math/tools/convert_from_string.hpp:17, from /usr/include/boost/math/constants/constants.hpp:14, from /usr/include/boost/math/distributions/cauchy.hpp:17, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeModel.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/DPeak.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeModel.h:78:28: note: by 'virtual OpenMS::IsotopeModel& OpenMS::IsotopeModel::operator=(const OpenMS::IsotopeModel&)' 78 | virtual IsotopeModel & operator=(const IsotopeModel & source); | ^~~~~~~~ [ 81%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeWavelet.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeWavelet.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeWavelet.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeWavelet.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeWavelet.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeWavelet.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeWavelet.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 81%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeWaveletTransform.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeWaveletTransform.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeWaveletTransform.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeWaveletTransform.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/IsotopeWaveletTransform.cpp [ 81%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/IsotopeCluster.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: note: by 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' 91 | virtual Fitter1D& operator=(const Fitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: warning: 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: note: by 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' 101 | virtual LevMarqFitter1D & operator=(const LevMarqFitter1D & source) | ^~~~~~~~ [ 81%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.cpp [ 81%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/ModelDescription.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/ModelDescription.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/ModelDescription.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/ModelDescription.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/ModelDescription.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/DPeak.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ModelDescription.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/ModelDescription.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ModelDescription.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/DPeak.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 81%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexClustering.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexClustering.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexClustering.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexClustering.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexClustering.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexClustering.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdGenerator.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/UniqueIdInterface.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexClustering.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:73:23: note: by 'OpenMS::PeakPickerHiRes& OpenMS::PeakPickerHiRes::operator=(const OpenMS::PeakPickerHiRes&)' 73 | class OPENMS_DLLAPI PeakPickerHiRes : | ^~~~~~~~~~~~~~~ [ 81%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexDeltaMasses.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexDeltaMasses.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexDeltaMasses.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexDeltaMasses.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexDeltaMasses.cpp [ 81%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexDeltaMassesGenerator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexDeltaMassesGenerator.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexDeltaMassesGenerator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexDeltaMassesGenerator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexDeltaMassesGenerator.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexDeltaMassesGenerator.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexDeltaMassesGenerator.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexDeltaMassesGenerator.h:60:23: note: by 'OpenMS::MultiplexDeltaMassesGenerator::operator=' 60 | class OPENMS_DLLAPI MultiplexDeltaMassesGenerator : | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 81%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredMSExperiment.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredMSExperiment.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredMSExperiment.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredMSExperiment.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredMSExperiment.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredMSExperiment.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Constants.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredMSExperiment.cpp:36: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredMSExperiment.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 81%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredPeak.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredPeak.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredPeak.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredPeak.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredPeak.cpp [ 81%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFiltering.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFiltering.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFiltering.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFiltering.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFiltering.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFiltering.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFiltering.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFiltering.cpp:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:73:23: note: by 'OpenMS::PeakPickerHiRes& OpenMS::PeakPickerHiRes::operator=(const OpenMS::PeakPickerHiRes&)' 73 | class OPENMS_DLLAPI PeakPickerHiRes : | ^~~~~~~~~~~~~~~ [ 83%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringCentroided.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringCentroided.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringCentroided.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringCentroided.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringCentroided.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringCentroided.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringCentroided.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringCentroided.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:73:23: note: by 'OpenMS::PeakPickerHiRes& OpenMS::PeakPickerHiRes::operator=(const OpenMS::PeakPickerHiRes&)' 73 | class OPENMS_DLLAPI PeakPickerHiRes : | ^~~~~~~~~~~~~~~ [ 83%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringProfile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringProfile.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringProfile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringProfile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringProfile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringProfile.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringProfile.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringProfile.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:73:23: note: by 'OpenMS::PeakPickerHiRes& OpenMS::PeakPickerHiRes::operator=(const OpenMS::PeakPickerHiRes&)' 73 | class OPENMS_DLLAPI PeakPickerHiRes : | ^~~~~~~~~~~~~~~ [ 83%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexIsotopicPeakPattern.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexIsotopicPeakPattern.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexIsotopicPeakPattern.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexIsotopicPeakPattern.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexIsotopicPeakPattern.cpp [ 83%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexSatelliteCentroided.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexSatelliteCentroided.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexSatelliteCentroided.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexSatelliteCentroided.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexSatelliteCentroided.cpp [ 83%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexSatelliteProfile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexSatelliteProfile.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexSatelliteProfile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexSatelliteProfile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexSatelliteProfile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringProfile.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/MultiplexSatelliteProfile.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringProfile.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:73:23: note: by 'OpenMS::PeakPickerHiRes& OpenMS::PeakPickerHiRes::operator=(const OpenMS::PeakPickerHiRes&)' 73 | class OPENMS_DLLAPI PeakPickerHiRes : | ^~~~~~~~~~~~~~~ [ 83%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/PeakWidthEstimator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/PeakWidthEstimator.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/PeakWidthEstimator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/PeakWidthEstimator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/PeakWidthEstimator.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/PeakWidthEstimator.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/PeakWidthEstimator.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/BSpline2d.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/PeakWidthEstimator.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/PeakWidthEstimator.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:73:23: note: by 'OpenMS::PeakPickerHiRes& OpenMS::PeakPickerHiRes::operator=(const OpenMS::PeakPickerHiRes&)' 73 | class OPENMS_DLLAPI PeakPickerHiRes : | ^~~~~~~~~~~~~~~ [ 83%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/ProductModel.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/ProductModel.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/ProductModel.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/ProductModel.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/ProductModel.cpp [ 83%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/SeedListGenerator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/SeedListGenerator.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/SeedListGenerator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/SeedListGenerator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/SeedListGenerator.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SeedListGenerator.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/SeedListGenerator.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SeedListGenerator.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SeedListGenerator.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 83%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPickedHelperStructs.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPickedHelperStructs.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h:87:26: note: by 'virtual OpenMS::TraceFitter& OpenMS::TraceFitter::operator=(const OpenMS::TraceFitter&)' 87 | virtual TraceFitter& operator=(const TraceFitter& source); | ^~~~~~~~ [ 83%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransform.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransform.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransform.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransform.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransform.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransform.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransform.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 83%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransformNumIntegration.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransformNumIntegration.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransformNumIntegration.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransformNumIntegration.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransformNumIntegration.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransform.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransformNumIntegration.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransformNumIntegration.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/iomanip:42, from /usr/include/boost/math/policies/error_handling.hpp:12, from /usr/include/boost/math/special_functions/gamma.hpp:23, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/MathFunctions.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransformNumIntegration.h:40: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 83%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/OptimizePeakDeconvolution.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/OptimizePeakDeconvolution.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/OptimizePeakDeconvolution.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/OptimizePeakDeconvolution.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/OptimizePeakDeconvolution.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakShape.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/OptimizePeakDeconvolution.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/OptimizePeakDeconvolution.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/OptimizePeakDeconvolution.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/OptimizePeakDeconvolution.h:140:40: note: by 'OpenMS::OptimizePeakDeconvolution& OpenMS::OptimizePeakDeconvolution::operator=(const OpenMS::OptimizePeakDeconvolution&)' 140 | inline OptimizePeakDeconvolution & operator=(const OptimizePeakDeconvolution & opt) | ^~~~~~~~ [ 83%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/OptimizePick.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/OptimizePick.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/OptimizePick.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/OptimizePick.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/OptimizePick.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakShape.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/OptimizePick.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/OptimizePick.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/iomanip:42, from /usr/include/boost/math/policies/error_handling.hpp:12, from /usr/include/boost/math/special_functions/acosh.hpp:20, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/OptimizePick.cpp:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 84%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerCWT.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerCWT.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerCWT.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerCWT.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerCWT.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerCWT.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerCWT.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/specfun.h:43, from /usr/include/c++/13/cmath:3699, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerCWT.cpp:35: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerCWT.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerCWT.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/OptimizePeakDeconvolution.h:140:40: note: by 'OpenMS::OptimizePeakDeconvolution& OpenMS::OptimizePeakDeconvolution::operator=(const OpenMS::OptimizePeakDeconvolution&)' 140 | inline OptimizePeakDeconvolution & operator=(const OptimizePeakDeconvolution & opt) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerCWT.h:78:23: note: by 'OpenMS::PeakPickerCWT& OpenMS::PeakPickerCWT::operator=(const OpenMS::PeakPickerCWT&)' 78 | class OPENMS_DLLAPI PeakPickerCWT : | ^~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerCWT.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/TwoDOptimization.h:103:23: note: by 'OpenMS::TwoDOptimization& OpenMS::TwoDOptimization::operator=(const OpenMS::TwoDOptimization&)' 103 | TwoDOptimization& operator=(const TwoDOptimization& opt); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/TICFilter.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerCWT.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/FilterFunctor.h:59:21: note: by 'OpenMS::FilterFunctor& OpenMS::FilterFunctor::operator=(const OpenMS::FilterFunctor&)' 59 | FilterFunctor & operator=(const FilterFunctor & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/TICFilter.h:68:17: note: by 'OpenMS::TICFilter& OpenMS::TICFilter::operator=(const OpenMS::TICFilter&)' 68 | TICFilter & operator=(const TICFilter & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h: In instantiation of 'class OpenMS::SignalToNoiseEstimator': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMeanIterative.h:70:9: required from 'class OpenMS::SignalToNoiseEstimatorMeanIterative' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerCWT.cpp:164:53: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMeanIterative.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerCWT.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h:85:37: note: by 'OpenMS::SignalToNoiseEstimator& OpenMS::SignalToNoiseEstimator::operator=(const OpenMS::SignalToNoiseEstimator&) [with Container = OpenMS::MSSpectrum]' 85 | inline SignalToNoiseEstimator & operator=(const SignalToNoiseEstimator & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMeanIterative.h: In instantiation of 'class OpenMS::SignalToNoiseEstimatorMeanIterative': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerCWT.cpp:164:53: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMeanIterative.h:144:50: note: by 'OpenMS::SignalToNoiseEstimatorMeanIterative& OpenMS::SignalToNoiseEstimatorMeanIterative::operator=(const OpenMS::SignalToNoiseEstimatorMeanIterative&) [with Container = OpenMS::MSSpectrum]' 144 | inline SignalToNoiseEstimatorMeanIterative & operator=(const SignalToNoiseEstimatorMeanIterative & source) | ^~~~~~~~ [ 84%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:73:23: note: by 'OpenMS::PeakPickerHiRes& OpenMS::PeakPickerHiRes::operator=(const OpenMS::PeakPickerHiRes&)' 73 | class OPENMS_DLLAPI PeakPickerHiRes : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h: In instantiation of 'class OpenMS::SignalToNoiseEstimator': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:81:9: required from 'class OpenMS::SignalToNoiseEstimatorMedian' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.cpp:75:83: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h:85:37: note: by 'OpenMS::SignalToNoiseEstimator& OpenMS::SignalToNoiseEstimator::operator=(const OpenMS::SignalToNoiseEstimator&) [with Container = OpenMS::MSSpectrum]' 85 | inline SignalToNoiseEstimator & operator=(const SignalToNoiseEstimator & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h: In instantiation of 'class OpenMS::SignalToNoiseEstimatorMedian': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.cpp:75:83: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:153:43: note: by 'OpenMS::SignalToNoiseEstimatorMedian& OpenMS::SignalToNoiseEstimatorMedian::operator=(const OpenMS::SignalToNoiseEstimatorMedian&) [with Container = OpenMS::MSSpectrum]' 153 | inline SignalToNoiseEstimatorMedian & operator=(const SignalToNoiseEstimatorMedian & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h: In instantiation of 'class OpenMS::SignalToNoiseEstimator': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:81:9: required from 'class OpenMS::SignalToNoiseEstimatorMedian' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.cpp:142:51: required from 'void OpenMS::PeakPickerHiRes::pick_(const ContainerType&, ContainerType&, std::vector&, bool) const [with ContainerType = OpenMS::MSChromatogram]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.cpp:119:10: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h:85:37: note: by 'OpenMS::SignalToNoiseEstimator& OpenMS::SignalToNoiseEstimator::operator=(const OpenMS::SignalToNoiseEstimator&) [with Container = OpenMS::MSChromatogram]' 85 | inline SignalToNoiseEstimator & operator=(const SignalToNoiseEstimator & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h: In instantiation of 'class OpenMS::SignalToNoiseEstimatorMedian': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.cpp:142:51: required from 'void OpenMS::PeakPickerHiRes::pick_(const ContainerType&, ContainerType&, std::vector&, bool) const [with ContainerType = OpenMS::MSChromatogram]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.cpp:119:10: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:153:43: note: by 'OpenMS::SignalToNoiseEstimatorMedian& OpenMS::SignalToNoiseEstimatorMedian::operator=(const OpenMS::SignalToNoiseEstimatorMedian&) [with Container = OpenMS::MSChromatogram]' 153 | inline SignalToNoiseEstimatorMedian & operator=(const SignalToNoiseEstimatorMedian & source) | ^~~~~~~~ [ 84%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerIterative.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerIterative.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerIterative.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerIterative.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerIterative.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerIterative.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerIterative.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:73:23: note: by 'OpenMS::PeakPickerHiRes& OpenMS::PeakPickerHiRes::operator=(const OpenMS::PeakPickerHiRes&)' 73 | class OPENMS_DLLAPI PeakPickerHiRes : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerIterative.h:96:23: note: by 'OpenMS::PeakPickerIterative& OpenMS::PeakPickerIterative::operator=(const OpenMS::PeakPickerIterative&)' 96 | class OPENMS_DLLAPI PeakPickerIterative : | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h: In instantiation of 'class OpenMS::SignalToNoiseEstimator': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:81:9: required from 'class OpenMS::SignalToNoiseEstimatorMedian' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerIterative.h:212:20: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerIterative.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h:85:37: note: by 'OpenMS::SignalToNoiseEstimator& OpenMS::SignalToNoiseEstimator::operator=(const OpenMS::SignalToNoiseEstimator&) [with Container = OpenMS::MSSpectrum]' 85 | inline SignalToNoiseEstimator & operator=(const SignalToNoiseEstimator & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h: In instantiation of 'class OpenMS::SignalToNoiseEstimatorMedian': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerIterative.h:212:20: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:153:43: note: by 'OpenMS::SignalToNoiseEstimatorMedian& OpenMS::SignalToNoiseEstimatorMedian::operator=(const OpenMS::SignalToNoiseEstimatorMedian&) [with Container = OpenMS::MSSpectrum]' 153 | inline SignalToNoiseEstimatorMedian & operator=(const SignalToNoiseEstimatorMedian & source) | ^~~~~~~~ [ 84%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerMaxima.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerMaxima.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerMaxima.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerMaxima.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerMaxima.cpp [ 84%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerSH.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerSH.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerSH.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerSH.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerSH.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerSH.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerSH.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerSH.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerSH.h:48:23: note: by 'OpenMS::PeakPickerSH& OpenMS::PeakPickerSH::operator=(const OpenMS::PeakPickerSH&)' 48 | class OPENMS_DLLAPI PeakPickerSH : | ^~~~~~~~~~~~ [ 84%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakShape.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakShape.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakShape.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakShape.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakShape.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakShape.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/PeakShape.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 84%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/TwoDOptimization.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/TwoDOptimization.cpp.o -MF CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/TwoDOptimization.cpp.o.d -o CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/TwoDOptimization.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/TwoDOptimization.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakShape.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/TwoDOptimization.h:51, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/TRANSFORMATIONS/RAW2PEAK/TwoDOptimization.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/TwoDOptimization.h:45: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/OptimizePeakDeconvolution.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/TwoDOptimization.h:52: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/OptimizePeakDeconvolution.h:140:40: note: by 'OpenMS::OptimizePeakDeconvolution& OpenMS::OptimizePeakDeconvolution::operator=(const OpenMS::OptimizePeakDeconvolution&)' 140 | inline OptimizePeakDeconvolution & operator=(const OptimizePeakDeconvolution & opt) | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/TwoDOptimization.h:53: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/TwoDOptimization.h:103:23: note: by 'OpenMS::TwoDOptimization& OpenMS::TwoDOptimization::operator=(const OpenMS::TwoDOptimization&)' 103 | TwoDOptimization& operator=(const TwoDOptimization& opt); | ^~~~~~~~ [ 84%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/AverageLinkage.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/AverageLinkage.cpp.o -MF CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/AverageLinkage.cpp.o.d -o CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/AverageLinkage.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/CLUSTERING/AverageLinkage.cpp [ 84%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/ClusterAnalyzer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/ClusterAnalyzer.cpp.o -MF CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/ClusterAnalyzer.cpp.o.d -o CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/ClusterAnalyzer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/CLUSTERING/ClusterAnalyzer.cpp [ 84%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/ClusterFunctor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/ClusterFunctor.cpp.o -MF CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/ClusterFunctor.cpp.o.d -o CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/ClusterFunctor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/CLUSTERING/ClusterFunctor.cpp [ 84%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/ClusterHierarchical.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/ClusterHierarchical.cpp.o -MF CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/ClusterHierarchical.cpp.o.d -o CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/ClusterHierarchical.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/CLUSTERING/ClusterHierarchical.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/CLUSTERING/ClusterHierarchical.h:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/CLUSTERING/ClusterHierarchical.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:68:34: note: by 'OpenMS::PeakSpectrumCompareFunctor& OpenMS::PeakSpectrumCompareFunctor::operator=(const OpenMS::PeakSpectrumCompareFunctor&)' 68 | PeakSpectrumCompareFunctor & operator=(const PeakSpectrumCompareFunctor & source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrum.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/CLUSTERING/ClusterHierarchical.h:48: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DistanceMatrix.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/CLUSTERING/ClusterHierarchical.h:44: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/CLUSTERING/ClusterHierarchical.h:49: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.h:73:35: note: by 'OpenMS::BinnedSpectrumCompareFunctor& OpenMS::BinnedSpectrumCompareFunctor::operator=(const OpenMS::BinnedSpectrumCompareFunctor&)' 73 | BinnedSpectrumCompareFunctor& operator=(const BinnedSpectrumCompareFunctor& source); | ^~~~~~~~ [ 84%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/ClusteringGrid.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/ClusteringGrid.cpp.o -MF CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/ClusteringGrid.cpp.o.d -o CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/ClusteringGrid.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/CLUSTERING/ClusteringGrid.cpp [ 84%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/CompleteLinkage.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/CompleteLinkage.cpp.o -MF CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/CompleteLinkage.cpp.o.d -o CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/CompleteLinkage.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/CLUSTERING/CompleteLinkage.cpp [ 86%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/EuclideanSimilarity.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/EuclideanSimilarity.cpp.o -MF CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/EuclideanSimilarity.cpp.o.d -o CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/EuclideanSimilarity.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/CLUSTERING/EuclideanSimilarity.cpp [ 86%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/GridBasedCluster.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/GridBasedCluster.cpp.o -MF CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/GridBasedCluster.cpp.o.d -o CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/GridBasedCluster.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/CLUSTERING/GridBasedCluster.cpp [ 86%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/GridBasedClustering.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/GridBasedClustering.cpp.o -MF CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/GridBasedClustering.cpp.o.d -o CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/GridBasedClustering.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/CLUSTERING/GridBasedClustering.cpp [ 86%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/SingleLinkage.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/SingleLinkage.cpp.o -MF CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/SingleLinkage.cpp.o.d -o CMakeFiles/OpenMS.dir/source/COMPARISON/CLUSTERING/SingleLinkage.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/CLUSTERING/SingleLinkage.cpp [ 86%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/BinnedSharedPeakCount.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/BinnedSharedPeakCount.cpp.o -MF CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/BinnedSharedPeakCount.cpp.o.d -o CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/BinnedSharedPeakCount.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/BinnedSharedPeakCount.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrum.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSharedPeakCount.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/BinnedSharedPeakCount.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.h:73:35: note: by 'OpenMS::BinnedSpectrumCompareFunctor& OpenMS::BinnedSpectrumCompareFunctor::operator=(const OpenMS::BinnedSpectrumCompareFunctor&)' 73 | BinnedSpectrumCompareFunctor& operator=(const BinnedSpectrumCompareFunctor& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSharedPeakCount.h:75:28: note: by 'OpenMS::BinnedSharedPeakCount& OpenMS::BinnedSharedPeakCount::operator=(const OpenMS::BinnedSharedPeakCount&)' 75 | BinnedSharedPeakCount& operator=(const BinnedSharedPeakCount& source); | ^~~~~~~~ [ 86%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/BinnedSpectralContrastAngle.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/BinnedSpectralContrastAngle.cpp.o -MF CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/BinnedSpectralContrastAngle.cpp.o.d -o CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/BinnedSpectralContrastAngle.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/BinnedSpectralContrastAngle.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrum.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectralContrastAngle.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/BinnedSpectralContrastAngle.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.h:73:35: note: by 'OpenMS::BinnedSpectrumCompareFunctor& OpenMS::BinnedSpectrumCompareFunctor::operator=(const OpenMS::BinnedSpectrumCompareFunctor&)' 73 | BinnedSpectrumCompareFunctor& operator=(const BinnedSpectrumCompareFunctor& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectralContrastAngle.h:73:34: note: by 'OpenMS::BinnedSpectralContrastAngle& OpenMS::BinnedSpectralContrastAngle::operator=(const OpenMS::BinnedSpectralContrastAngle&)' 73 | BinnedSpectralContrastAngle& operator=(const BinnedSpectralContrastAngle& source); | ^~~~~~~~ [ 86%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/BinnedSpectrum.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/BinnedSpectrum.cpp.o -MF CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/BinnedSpectrum.cpp.o.d -o CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/BinnedSpectrum.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/BinnedSpectrum.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrum.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/BinnedSpectrum.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 86%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.cpp.o -MF CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.cpp.o.d -o CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrum.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.h:73:35: note: by 'OpenMS::BinnedSpectrumCompareFunctor& OpenMS::BinnedSpectrumCompareFunctor::operator=(const OpenMS::BinnedSpectrumCompareFunctor&)' 73 | BinnedSpectrumCompareFunctor& operator=(const BinnedSpectrumCompareFunctor& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSharedPeakCount.h:75:28: note: by 'OpenMS::BinnedSharedPeakCount& OpenMS::BinnedSharedPeakCount::operator=(const OpenMS::BinnedSharedPeakCount&)' 75 | BinnedSharedPeakCount& operator=(const BinnedSharedPeakCount& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectralContrastAngle.h:73:34: note: by 'OpenMS::BinnedSpectralContrastAngle& OpenMS::BinnedSpectralContrastAngle::operator=(const OpenMS::BinnedSpectralContrastAngle&)' 73 | BinnedSpectralContrastAngle& operator=(const BinnedSpectralContrastAngle& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSumAgreeingIntensities.h:79:35: note: by 'OpenMS::BinnedSumAgreeingIntensities& OpenMS::BinnedSumAgreeingIntensities::operator=(const OpenMS::BinnedSumAgreeingIntensities&)' 79 | BinnedSumAgreeingIntensities& operator=(const BinnedSumAgreeingIntensities& source); | ^~~~~~~~ [ 86%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/BinnedSumAgreeingIntensities.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/BinnedSumAgreeingIntensities.cpp.o -MF CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/BinnedSumAgreeingIntensities.cpp.o.d -o CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/BinnedSumAgreeingIntensities.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/BinnedSumAgreeingIntensities.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrum.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSumAgreeingIntensities.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/BinnedSumAgreeingIntensities.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.h:73:35: note: by 'OpenMS::BinnedSpectrumCompareFunctor& OpenMS::BinnedSpectrumCompareFunctor::operator=(const OpenMS::BinnedSpectrumCompareFunctor&)' 73 | BinnedSpectrumCompareFunctor& operator=(const BinnedSpectrumCompareFunctor& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSumAgreeingIntensities.h:79:35: note: by 'OpenMS::BinnedSumAgreeingIntensities& OpenMS::BinnedSumAgreeingIntensities::operator=(const OpenMS::BinnedSumAgreeingIntensities&)' 79 | BinnedSumAgreeingIntensities& operator=(const BinnedSumAgreeingIntensities& source); | ^~~~~~~~ [ 86%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/PeakAlignment.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/PeakAlignment.cpp.o -MF CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/PeakAlignment.cpp.o.d -o CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/PeakAlignment.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/PeakAlignment.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakAlignment.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/PeakAlignment.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:68:34: note: by 'OpenMS::PeakSpectrumCompareFunctor& OpenMS::PeakSpectrumCompareFunctor::operator=(const OpenMS::PeakSpectrumCompareFunctor&)' 68 | PeakSpectrumCompareFunctor & operator=(const PeakSpectrumCompareFunctor & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakAlignment.h:68:21: note: by 'OpenMS::PeakAlignment& OpenMS::PeakAlignment::operator=(const OpenMS::PeakAlignment&)' 68 | PeakAlignment & operator=(const PeakAlignment & source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/PeakAlignment.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/PeakAlignment.cpp:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 86%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.cpp.o -MF CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.cpp.o.d -o CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:68:34: note: by 'OpenMS::PeakSpectrumCompareFunctor& OpenMS::PeakSpectrumCompareFunctor::operator=(const OpenMS::PeakSpectrumCompareFunctor&)' 68 | PeakSpectrumCompareFunctor & operator=(const PeakSpectrumCompareFunctor & source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumCheapDPCorr.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumCheapDPCorr.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumCheapDPCorr.h:80:27: note: by 'OpenMS::SpectrumCheapDPCorr& OpenMS::SpectrumCheapDPCorr::operator=(const OpenMS::SpectrumCheapDPCorr&)' 80 | SpectrumCheapDPCorr & operator=(const SpectrumCheapDPCorr & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumPrecursorComparator.h:69:35: note: by 'OpenMS::SpectrumPrecursorComparator& OpenMS::SpectrumPrecursorComparator::operator=(const OpenMS::SpectrumPrecursorComparator&)' 69 | SpectrumPrecursorComparator & operator=(const SpectrumPrecursorComparator & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/ZhangSimilarityScore.h:74:28: note: by 'OpenMS::ZhangSimilarityScore& OpenMS::ZhangSimilarityScore::operator=(const OpenMS::ZhangSimilarityScore&)' 74 | ZhangSimilarityScore & operator=(const ZhangSimilarityScore & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignmentScore.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignment.h:84:25: note: by 'OpenMS::SpectrumAlignment& OpenMS::SpectrumAlignment::operator=(const OpenMS::SpectrumAlignment&)' 84 | SpectrumAlignment & operator=(const SpectrumAlignment & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignmentScore.h:89:30: note: by 'OpenMS::SpectrumAlignmentScore& OpenMS::SpectrumAlignmentScore::operator=(const OpenMS::SpectrumAlignmentScore&)' 89 | SpectrumAlignmentScore & operator=(const SpectrumAlignmentScore & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.cpp:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SteinScottImproveScore.h:86:30: note: by 'OpenMS::SteinScottImproveScore& OpenMS::SteinScottImproveScore::operator=(const OpenMS::SteinScottImproveScore&)' 86 | SteinScottImproveScore & operator=(const SteinScottImproveScore & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.cpp:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakAlignment.h:68:21: note: by 'OpenMS::PeakAlignment& OpenMS::PeakAlignment::operator=(const OpenMS::PeakAlignment&)' 68 | PeakAlignment & operator=(const PeakAlignment & source); | ^~~~~~~~ [ 86%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/SpectraSTSimilarityScore.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/SpectraSTSimilarityScore.cpp.o -MF CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/SpectraSTSimilarityScore.cpp.o.d -o CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/SpectraSTSimilarityScore.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/SpectraSTSimilarityScore.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectraSTSimilarityScore.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/SpectraSTSimilarityScore.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:68:34: note: by 'OpenMS::PeakSpectrumCompareFunctor& OpenMS::PeakSpectrumCompareFunctor::operator=(const OpenMS::PeakSpectrumCompareFunctor&)' 68 | PeakSpectrumCompareFunctor & operator=(const PeakSpectrumCompareFunctor & source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrum.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectraSTSimilarityScore.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectraSTSimilarityScore.h:80:32: note: by 'OpenMS::SpectraSTSimilarityScore& OpenMS::SpectraSTSimilarityScore::operator=(const OpenMS::SpectraSTSimilarityScore&)' 80 | SpectraSTSimilarityScore & operator=(const SpectraSTSimilarityScore & source); | ^~~~~~~~ [ 86%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/SpectrumAlignment.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/SpectrumAlignment.cpp.o -MF CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/SpectrumAlignment.cpp.o.d -o CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/SpectrumAlignment.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/SpectrumAlignment.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignment.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/SpectrumAlignment.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignment.h:84:25: note: by 'OpenMS::SpectrumAlignment& OpenMS::SpectrumAlignment::operator=(const OpenMS::SpectrumAlignment&)' 84 | SpectrumAlignment & operator=(const SpectrumAlignment & source); | ^~~~~~~~ [ 86%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/SpectrumAlignmentScore.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/SpectrumAlignmentScore.cpp.o -MF CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/SpectrumAlignmentScore.cpp.o.d -o CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/SpectrumAlignmentScore.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/SpectrumAlignmentScore.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignmentScore.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/SpectrumAlignmentScore.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignment.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignmentScore.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignment.h:84:25: note: by 'OpenMS::SpectrumAlignment& OpenMS::SpectrumAlignment::operator=(const OpenMS::SpectrumAlignment&)' 84 | SpectrumAlignment & operator=(const SpectrumAlignment & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignmentScore.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:68:34: note: by 'OpenMS::PeakSpectrumCompareFunctor& OpenMS::PeakSpectrumCompareFunctor::operator=(const OpenMS::PeakSpectrumCompareFunctor&)' 68 | PeakSpectrumCompareFunctor & operator=(const PeakSpectrumCompareFunctor & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignmentScore.h:89:30: note: by 'OpenMS::SpectrumAlignmentScore& OpenMS::SpectrumAlignmentScore::operator=(const OpenMS::SpectrumAlignmentScore&)' 89 | SpectrumAlignmentScore & operator=(const SpectrumAlignmentScore & source); | ^~~~~~~~ [ 88%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/SpectrumCheapDPCorr.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/SpectrumCheapDPCorr.cpp.o -MF CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/SpectrumCheapDPCorr.cpp.o.d -o CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/SpectrumCheapDPCorr.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/SpectrumCheapDPCorr.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumCheapDPCorr.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/SpectrumCheapDPCorr.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:68:34: note: by 'OpenMS::PeakSpectrumCompareFunctor& OpenMS::PeakSpectrumCompareFunctor::operator=(const OpenMS::PeakSpectrumCompareFunctor&)' 68 | PeakSpectrumCompareFunctor & operator=(const PeakSpectrumCompareFunctor & source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumCheapDPCorr.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumCheapDPCorr.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumCheapDPCorr.h:80:27: note: by 'OpenMS::SpectrumCheapDPCorr& OpenMS::SpectrumCheapDPCorr::operator=(const OpenMS::SpectrumCheapDPCorr&)' 80 | SpectrumCheapDPCorr & operator=(const SpectrumCheapDPCorr & source); | ^~~~~~~~ [ 88%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/SpectrumPrecursorComparator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/SpectrumPrecursorComparator.cpp.o -MF CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/SpectrumPrecursorComparator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/SpectrumPrecursorComparator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/SpectrumPrecursorComparator.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumPrecursorComparator.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/SpectrumPrecursorComparator.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:68:34: note: by 'OpenMS::PeakSpectrumCompareFunctor& OpenMS::PeakSpectrumCompareFunctor::operator=(const OpenMS::PeakSpectrumCompareFunctor&)' 68 | PeakSpectrumCompareFunctor & operator=(const PeakSpectrumCompareFunctor & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumPrecursorComparator.h:69:35: note: by 'OpenMS::SpectrumPrecursorComparator& OpenMS::SpectrumPrecursorComparator::operator=(const OpenMS::SpectrumPrecursorComparator&)' 69 | SpectrumPrecursorComparator & operator=(const SpectrumPrecursorComparator & source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/SpectrumPrecursorComparator.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/SpectrumPrecursorComparator.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 88%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/SteinScottImproveScore.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/SteinScottImproveScore.cpp.o -MF CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/SteinScottImproveScore.cpp.o.d -o CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/SteinScottImproveScore.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/SteinScottImproveScore.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SteinScottImproveScore.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/SteinScottImproveScore.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:68:34: note: by 'OpenMS::PeakSpectrumCompareFunctor& OpenMS::PeakSpectrumCompareFunctor::operator=(const OpenMS::PeakSpectrumCompareFunctor&)' 68 | PeakSpectrumCompareFunctor & operator=(const PeakSpectrumCompareFunctor & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SteinScottImproveScore.h:86:30: note: by 'OpenMS::SteinScottImproveScore& OpenMS::SteinScottImproveScore::operator=(const OpenMS::SteinScottImproveScore&)' 86 | SteinScottImproveScore & operator=(const SteinScottImproveScore & source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/SteinScottImproveScore.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/SteinScottImproveScore.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 88%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/ZhangSimilarityScore.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/ZhangSimilarityScore.cpp.o -MF CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/ZhangSimilarityScore.cpp.o.d -o CMakeFiles/OpenMS.dir/source/COMPARISON/SPECTRA/ZhangSimilarityScore.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/ZhangSimilarityScore.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/ZhangSimilarityScore.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/ZhangSimilarityScore.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:68:34: note: by 'OpenMS::PeakSpectrumCompareFunctor& OpenMS::PeakSpectrumCompareFunctor::operator=(const OpenMS::PeakSpectrumCompareFunctor&)' 68 | PeakSpectrumCompareFunctor & operator=(const PeakSpectrumCompareFunctor & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/ZhangSimilarityScore.h:74:28: note: by 'OpenMS::ZhangSimilarityScore& OpenMS::ZhangSimilarityScore::operator=(const OpenMS::ZhangSimilarityScore&)' 74 | ZhangSimilarityScore & operator=(const ZhangSimilarityScore & source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/ZhangSimilarityScore.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/COMPARISON/SPECTRA/ZhangSimilarityScore.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 88%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/DetectabilitySimulation.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/DetectabilitySimulation.cpp.o -MF CMakeFiles/OpenMS.dir/source/SIMULATION/DetectabilitySimulation.cpp.o.d -o CMakeFiles/OpenMS.dir/source/SIMULATION/DetectabilitySimulation.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/DetectabilitySimulation.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/SimTypes.h:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/DetectabilitySimulation.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/DetectabilitySimulation.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/DetectabilitySimulation.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/DetectabilitySimulation.h:71:30: note: by 'OpenMS::DetectabilitySimulation& OpenMS::DetectabilitySimulation::operator=(const OpenMS::DetectabilitySimulation&)' 71 | DetectabilitySimulation& operator=(const DetectabilitySimulation& source); | ^~~~~~~~ [ 88%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/DigestSimulation.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/DigestSimulation.cpp.o -MF CMakeFiles/OpenMS.dir/source/SIMULATION/DigestSimulation.cpp.o.d -o CMakeFiles/OpenMS.dir/source/SIMULATION/DigestSimulation.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/DigestSimulation.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/SimTypes.h:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/DigestSimulation.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/DigestSimulation.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/DigestSimulation.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/DigestSimulation.h:74:23: note: by 'OpenMS::DigestSimulation& OpenMS::DigestSimulation::operator=(const OpenMS::DigestSimulation&)' 74 | DigestSimulation& operator=(const DigestSimulation& source); | ^~~~~~~~ [ 88%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/EGHModel.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/EGHModel.cpp.o -MF CMakeFiles/OpenMS.dir/source/SIMULATION/EGHModel.cpp.o.d -o CMakeFiles/OpenMS.dir/source/SIMULATION/EGHModel.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/EGHModel.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/DPeak.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/EGHModel.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/EGHModel.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/numeric:75, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/EGHModel.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/DPeak.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/EGHModel.h:74:24: note: by 'virtual OpenMS::EGHModel& OpenMS::EGHModel::operator=(const OpenMS::EGHModel&)' 74 | virtual EGHModel & operator=(const EGHModel & source); | ^~~~~~~~ [ 88%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/EGHFitter1D.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/EGHFitter1D.cpp.o -MF CMakeFiles/OpenMS.dir/source/SIMULATION/EGHFitter1D.cpp.o.d -o CMakeFiles/OpenMS.dir/source/SIMULATION/EGHFitter1D.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/EGHFitter1D.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/EGHFitter1D.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/EGHFitter1D.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/IsotopeCluster.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: note: by 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' 91 | virtual Fitter1D& operator=(const Fitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: warning: 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: note: by 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' 101 | virtual LevMarqFitter1D & operator=(const LevMarqFitter1D & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: warning: 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/EGHFitter1D.h:62:27: note: by 'virtual OpenMS::EGHFitter1D& OpenMS::EGHFitter1D::operator=(const OpenMS::EGHFitter1D&)' 62 | virtual EGHFitter1D & operator=(const EGHFitter1D & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/EGHFitter1D.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ [ 88%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/IonizationSimulation.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/IonizationSimulation.cpp.o -MF CMakeFiles/OpenMS.dir/source/SIMULATION/IonizationSimulation.cpp.o.d -o CMakeFiles/OpenMS.dir/source/SIMULATION/IonizationSimulation.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/IonizationSimulation.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/SimTypes.h:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/IonizationSimulation.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/IonizationSimulation.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/ProgressLogger.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/IonizationSimulation.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/stl_tree.h:63: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/IonizationSimulation.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/IonizationSimulation.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/IonizationSimulation.h:93:27: note: by 'OpenMS::IonizationSimulation& OpenMS::IonizationSimulation::operator=(const OpenMS::IonizationSimulation&)' 93 | IonizationSimulation& operator=(const IonizationSimulation& source); | ^~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/SimTypes.h:41: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/IonizationSimulation.cpp: In member function 'void OpenMS::IonizationSimulation::ionize(OpenMS::SimTypes::FeatureMapSim&, OpenMS::ConsensusMap&, OpenMS::SimTypes::MSSimExperiment&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/IonizationSimulation.cpp:149:46: warning: implicitly-declared 'OpenMS::ConsensusMap::ColumnHeader& OpenMS::ConsensusMap::ColumnHeader::operator=(const OpenMS::ConsensusMap::ColumnHeader&)' is deprecated [-Wdeprecated-copy] 149 | charge_consensus.getColumnHeaders()[0] = map_description; | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:133:7: note: because 'OpenMS::ConsensusMap::ColumnHeader' has user-provided 'OpenMS::ConsensusMap::ColumnHeader::ColumnHeader(const OpenMS::ConsensusMap::ColumnHeader&)' 133 | ColumnHeader(const ColumnHeader&); | ^~~~~~~~~~~~ [ 88%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/MSSim.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/MSSim.cpp.o -MF CMakeFiles/OpenMS.dir/source/SIMULATION/MSSim.cpp.o.d -o CMakeFiles/OpenMS.dir/source/SIMULATION/MSSim.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/MSSim.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/SimTypes.h:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/MSSim.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/MSSim.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/MSSim.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/MSSim.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/MSSim.h:68:23: note: by 'OpenMS::MSSim& OpenMS::MSSim::operator=(const OpenMS::MSSim&)' 68 | class OPENMS_DLLAPI MSSim : | ^~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/MSSim.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/DigestSimulation.h:74:23: note: by 'OpenMS::DigestSimulation& OpenMS::DigestSimulation::operator=(const OpenMS::DigestSimulation&)' 74 | DigestSimulation& operator=(const DigestSimulation& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/MSSim.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/DetectabilitySimulation.h:71:30: note: by 'OpenMS::DetectabilitySimulation& OpenMS::DetectabilitySimulation::operator=(const OpenMS::DetectabilitySimulation&)' 71 | DetectabilitySimulation& operator=(const DetectabilitySimulation& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/EGHModel.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/RawMSSignalSimulation.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/MSSim.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/EGHModel.h:74:24: note: by 'virtual OpenMS::EGHModel& OpenMS::EGHModel::operator=(const OpenMS::EGHModel&)' 74 | virtual EGHModel & operator=(const EGHModel & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ProductModel.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/RawMSSignalSimulation.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeModel.h:78:28: note: by 'virtual OpenMS::IsotopeModel& OpenMS::IsotopeModel::operator=(const OpenMS::IsotopeModel&)' 78 | virtual IsotopeModel & operator=(const IsotopeModel & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<2>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ProductModel.h:65:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 2]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 2]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ProductModel.h:124:28: note: by 'virtual OpenMS::ProductModel<2>& OpenMS::ProductModel<2>::operator=(const OpenMS::ProductModel<2>&)' 124 | virtual ProductModel & operator=(const ProductModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/RawMSSignalSimulation.h:82:28: note: by 'OpenMS::RawMSSignalSimulation& OpenMS::RawMSSignalSimulation::operator=(const OpenMS::RawMSSignalSimulation&)' 82 | RawMSSignalSimulation& operator=(const RawMSSignalSimulation& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/MSSim.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/RawTandemMSSignalSimulation.h:75:34: note: by 'OpenMS::RawTandemMSSignalSimulation& OpenMS::RawTandemMSSignalSimulation::operator=(const OpenMS::RawTandemMSSignalSimulation&)' 75 | RawTandemMSSignalSimulation& operator=(const RawTandemMSSignalSimulation& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/MSSim.cpp:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/IonizationSimulation.h:93:27: note: by 'OpenMS::IonizationSimulation& OpenMS::IonizationSimulation::operator=(const OpenMS::IonizationSimulation&)' 93 | IonizationSimulation& operator=(const IonizationSimulation& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/MSSim.cpp:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/RTSimulation.h:78:19: note: by 'OpenMS::RTSimulation& OpenMS::RTSimulation::operator=(const OpenMS::RTSimulation&)' 78 | RTSimulation& operator=(const RTSimulation& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/MSSim.cpp:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler.h:49:23: note: by 'OpenMS::BaseLabeler& OpenMS::BaseLabeler::operator=(const OpenMS::BaseLabeler&)' 49 | class OPENMS_DLLAPI BaseLabeler : | ^~~~~~~~~~~ [ 88%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/RTSimulation.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/RTSimulation.cpp.o -MF CMakeFiles/OpenMS.dir/source/SIMULATION/RTSimulation.cpp.o.d -o CMakeFiles/OpenMS.dir/source/SIMULATION/RTSimulation.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/RTSimulation.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/SimTypes.h:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/RTSimulation.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/RTSimulation.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Map.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/RTSimulation.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/RTSimulation.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/RTSimulation.h:78:19: note: by 'OpenMS::RTSimulation& OpenMS::RTSimulation::operator=(const OpenMS::RTSimulation&)' 78 | RTSimulation& operator=(const RTSimulation& source); | ^~~~~~~~ [ 88%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/RawMSSignalSimulation.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/RawMSSignalSimulation.cpp.o -MF CMakeFiles/OpenMS.dir/source/SIMULATION/RawMSSignalSimulation.cpp.o.d -o CMakeFiles/OpenMS.dir/source/SIMULATION/RawMSSignalSimulation.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/RawMSSignalSimulation.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/SimTypes.h:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/RawMSSignalSimulation.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/RawMSSignalSimulation.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/RawMSSignalSimulation.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/EGHModel.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/RawMSSignalSimulation.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/EGHModel.h:74:24: note: by 'virtual OpenMS::EGHModel& OpenMS::EGHModel::operator=(const OpenMS::EGHModel&)' 74 | virtual EGHModel & operator=(const EGHModel & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ProductModel.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/RawMSSignalSimulation.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeModel.h:78:28: note: by 'virtual OpenMS::IsotopeModel& OpenMS::IsotopeModel::operator=(const OpenMS::IsotopeModel&)' 78 | virtual IsotopeModel & operator=(const IsotopeModel & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<2>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ProductModel.h:65:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 2]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 2]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ProductModel.h:124:28: note: by 'virtual OpenMS::ProductModel<2>& OpenMS::ProductModel<2>::operator=(const OpenMS::ProductModel<2>&)' 124 | virtual ProductModel & operator=(const ProductModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/RawMSSignalSimulation.h:82:28: note: by 'OpenMS::RawMSSignalSimulation& OpenMS::RawMSSignalSimulation::operator=(const OpenMS::RawMSSignalSimulation&)' 82 | RawMSSignalSimulation& operator=(const RawMSSignalSimulation& source); | ^~~~~~~~ [ 88%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/RawTandemMSSignalSimulation.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/RawTandemMSSignalSimulation.cpp.o -MF CMakeFiles/OpenMS.dir/source/SIMULATION/RawTandemMSSignalSimulation.cpp.o.d -o CMakeFiles/OpenMS.dir/source/SIMULATION/RawTandemMSSignalSimulation.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/RawTandemMSSignalSimulation.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/SimTypes.h:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/RawTandemMSSignalSimulation.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/RawTandemMSSignalSimulation.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/RawTandemMSSignalSimulation.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/RawTandemMSSignalSimulation.h:75:34: note: by 'OpenMS::RawTandemMSSignalSimulation& OpenMS::RawTandemMSSignalSimulation::operator=(const OpenMS::RawTandemMSSignalSimulation&)' 75 | RawTandemMSSignalSimulation& operator=(const RawTandemMSSignalSimulation& source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDMapper.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/OfflinePrecursorIonSelection.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/RawTandemMSSignalSimulation.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/IDMapper.h:79:15: note: by 'OpenMS::IDMapper& OpenMS::IDMapper::operator=(const OpenMS::IDMapper&)' 79 | IDMapper& operator=(const IDMapper& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/OfflinePrecursorIonSelection.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PSLPFormulation.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PSLPFormulation.h:153:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 153 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PSLPFormulation.h:164:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 164 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/PSLPFormulation.h:55:23: note: by 'OpenMS::PSLPFormulation& OpenMS::PSLPFormulation::operator=(const OpenMS::PSLPFormulation&)' 55 | class OPENMS_DLLAPI PSLPFormulation : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/OfflinePrecursorIonSelection.h:61:23: note: by 'OpenMS::OfflinePrecursorIonSelection& OpenMS::OfflinePrecursorIonSelection::operator=(const OpenMS::OfflinePrecursorIonSelection&)' 61 | class OPENMS_DLLAPI OfflinePrecursorIonSelection : | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGenerator.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGeneratorSet.h:44, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/RawTandemMSSignalSimulation.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h:87:35: note: by 'OpenMS::TheoreticalSpectrumGenerator& OpenMS::TheoreticalSpectrumGenerator::operator=(const OpenMS::TheoreticalSpectrumGenerator&)' 87 | TheoreticalSpectrumGenerator& operator=(const TheoreticalSpectrumGenerator& tsg); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGenerator.h:205:39: note: by 'OpenMS::SvmTheoreticalSpectrumGenerator& OpenMS::SvmTheoreticalSpectrumGenerator::operator=(const OpenMS::SvmTheoreticalSpectrumGenerator&)' 205 | SvmTheoreticalSpectrumGenerator & operator=(const SvmTheoreticalSpectrumGenerator & tsg); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/CLUSTERING/ClusterHierarchical.h:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SpectraMerger.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/RawTandemMSSignalSimulation.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/PeakSpectrumCompareFunctor.h:68:34: note: by 'OpenMS::PeakSpectrumCompareFunctor& OpenMS::PeakSpectrumCompareFunctor::operator=(const OpenMS::PeakSpectrumCompareFunctor&)' 68 | PeakSpectrumCompareFunctor & operator=(const PeakSpectrumCompareFunctor & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/CLUSTERING/ClusterHierarchical.h:49: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.h:73:35: note: by 'OpenMS::BinnedSpectrumCompareFunctor& OpenMS::BinnedSpectrumCompareFunctor::operator=(const OpenMS::BinnedSpectrumCompareFunctor&)' 73 | BinnedSpectrumCompareFunctor& operator=(const BinnedSpectrumCompareFunctor& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SpectraMerger.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/SpectrumAlignment.h:84:25: note: by 'OpenMS::SpectrumAlignment& OpenMS::SpectrumAlignment::operator=(const OpenMS::SpectrumAlignment&)' 84 | SpectrumAlignment & operator=(const SpectrumAlignment & source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SpectraMerger.h:45: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:97:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 97 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:133:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 133 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:171:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 171 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:207:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 207 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:242:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 242 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:278:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 278 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:309:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 309 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:343:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 343 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:395:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 395 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:444:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 444 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:489:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 489 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:527:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 527 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:564:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 564 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:617:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 617 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RangeUtils.h:663:10: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 663 | std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SpectraMerger.h:75:11: note: by 'OpenMS::SpectraMerger::SpectraDistance_::operator=' 75 | class SpectraDistance_ : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/SpectraMerger.h:146:20: note: by 'OpenMS::SpectraMerger& OpenMS::SpectraMerger::operator=(const OpenMS::SpectraMerger&)' 146 | SpectraMerger& operator=(const SpectraMerger& source); | ^~~~~~~~ [ 90%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/LABELING/BaseLabeler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/LABELING/BaseLabeler.cpp.o -MF CMakeFiles/OpenMS.dir/source/SIMULATION/LABELING/BaseLabeler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/SIMULATION/LABELING/BaseLabeler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/LABELING/BaseLabeler.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/LABELING/BaseLabeler.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler.h:49:23: note: by 'OpenMS::BaseLabeler& OpenMS::BaseLabeler::operator=(const OpenMS::BaseLabeler&)' 49 | class OPENMS_DLLAPI BaseLabeler : | ^~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler_impl.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/LABELING/BaseLabeler.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/ITRAQLabeler.h:53:23: note: by 'OpenMS::ITRAQLabeler& OpenMS::ITRAQLabeler::operator=(const OpenMS::ITRAQLabeler&)' 53 | class OPENMS_DLLAPI ITRAQLabeler : | ^~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler_impl.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/LabelFreeLabeler.h:45:23: note: by 'OpenMS::LabelFreeLabeler& OpenMS::LabelFreeLabeler::operator=(const OpenMS::LabelFreeLabeler&)' 45 | class OPENMS_DLLAPI LabelFreeLabeler : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler_impl.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/O18Labeler.h:49:23: note: by 'OpenMS::O18Labeler& OpenMS::O18Labeler::operator=(const OpenMS::O18Labeler&)' 49 | class OPENMS_DLLAPI O18Labeler : | ^~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler_impl.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/SILACLabeler.h:50:23: note: by 'OpenMS::SILACLabeler& OpenMS::SILACLabeler::operator=(const OpenMS::SILACLabeler&)' 50 | class OPENMS_DLLAPI SILACLabeler : | ^~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler_impl.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/ICPLLabeler.h:49:23: note: by 'OpenMS::ICPLLabeler& OpenMS::ICPLLabeler::operator=(const OpenMS::ICPLLabeler&)' 49 | class OPENMS_DLLAPI ICPLLabeler : | ^~~~~~~~~~~ [ 90%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/LABELING/ITRAQLabeler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/LABELING/ITRAQLabeler.cpp.o -MF CMakeFiles/OpenMS.dir/source/SIMULATION/LABELING/ITRAQLabeler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/SIMULATION/LABELING/ITRAQLabeler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/LABELING/ITRAQLabeler.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/ItraqConstants.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/ITRAQLabeler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/LABELING/ITRAQLabeler.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Map.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/QUANTITATION/ItraqConstants.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/ITRAQLabeler.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler.h:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler.h:49:23: note: by 'OpenMS::BaseLabeler& OpenMS::BaseLabeler::operator=(const OpenMS::BaseLabeler&)' 49 | class OPENMS_DLLAPI BaseLabeler : | ^~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/ITRAQLabeler.h:53:23: note: by 'OpenMS::ITRAQLabeler& OpenMS::ITRAQLabeler::operator=(const OpenMS::ITRAQLabeler&)' 53 | class OPENMS_DLLAPI ITRAQLabeler : | ^~~~~~~~~~~~ [ 90%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/LABELING/LabelFreeLabeler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/LABELING/LabelFreeLabeler.cpp.o -MF CMakeFiles/OpenMS.dir/source/SIMULATION/LABELING/LabelFreeLabeler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/SIMULATION/LABELING/LabelFreeLabeler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/LABELING/LabelFreeLabeler.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/LabelFreeLabeler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/LABELING/LabelFreeLabeler.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/LABELING/LabelFreeLabeler.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/stl_tree.h:63: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler.h:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler.h:49:23: note: by 'OpenMS::BaseLabeler& OpenMS::BaseLabeler::operator=(const OpenMS::BaseLabeler&)' 49 | class OPENMS_DLLAPI BaseLabeler : | ^~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/LabelFreeLabeler.h:45:23: note: by 'OpenMS::LabelFreeLabeler& OpenMS::LabelFreeLabeler::operator=(const OpenMS::LabelFreeLabeler&)' 45 | class OPENMS_DLLAPI LabelFreeLabeler : | ^~~~~~~~~~~~~~~~ [ 90%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/LABELING/O18Labeler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/LABELING/O18Labeler.cpp.o -MF CMakeFiles/OpenMS.dir/source/SIMULATION/LABELING/O18Labeler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/SIMULATION/LABELING/O18Labeler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/LABELING/O18Labeler.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/O18Labeler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/LABELING/O18Labeler.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler.h:49:23: note: by 'OpenMS::BaseLabeler& OpenMS::BaseLabeler::operator=(const OpenMS::BaseLabeler&)' 49 | class OPENMS_DLLAPI BaseLabeler : | ^~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/O18Labeler.h:49:23: note: by 'OpenMS::O18Labeler& OpenMS::O18Labeler::operator=(const OpenMS::O18Labeler&)' 49 | class OPENMS_DLLAPI O18Labeler : | ^~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/LABELING/O18Labeler.cpp: In member function 'virtual void OpenMS::O18Labeler::postDigestHook(OpenMS::SimTypes::FeatureMapSimVector&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/LABELING/O18Labeler.cpp:219:40: warning: implicitly-declared 'OpenMS::ConsensusMap::ColumnHeader& OpenMS::ConsensusMap::ColumnHeader::operator=(const OpenMS::ConsensusMap::ColumnHeader&)' is deprecated [-Wdeprecated-copy] 219 | consensus_.getColumnHeaders()[0] = map_description; | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:133:7: note: because 'OpenMS::ConsensusMap::ColumnHeader' has user-provided 'OpenMS::ConsensusMap::ColumnHeader::ColumnHeader(const OpenMS::ConsensusMap::ColumnHeader&)' 133 | ColumnHeader(const ColumnHeader&); | ^~~~~~~~~~~~ [ 90%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/LABELING/SILACLabeler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/LABELING/SILACLabeler.cpp.o -MF CMakeFiles/OpenMS.dir/source/SIMULATION/LABELING/SILACLabeler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/SIMULATION/LABELING/SILACLabeler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/LABELING/SILACLabeler.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/SILACLabeler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/LABELING/SILACLabeler.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler.h:49:23: note: by 'OpenMS::BaseLabeler& OpenMS::BaseLabeler::operator=(const OpenMS::BaseLabeler&)' 49 | class OPENMS_DLLAPI BaseLabeler : | ^~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/SILACLabeler.h:50:23: note: by 'OpenMS::SILACLabeler& OpenMS::SILACLabeler::operator=(const OpenMS::SILACLabeler&)' 50 | class OPENMS_DLLAPI SILACLabeler : | ^~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/LABELING/SILACLabeler.cpp: In member function 'virtual void OpenMS::SILACLabeler::postDigestHook(OpenMS::SimTypes::FeatureMapSimVector&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/LABELING/SILACLabeler.cpp:439:40: warning: implicitly-declared 'OpenMS::ConsensusMap::ColumnHeader& OpenMS::ConsensusMap::ColumnHeader::operator=(const OpenMS::ConsensusMap::ColumnHeader&)' is deprecated [-Wdeprecated-copy] 439 | consensus_.getColumnHeaders()[0] = map_description; | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:133:7: note: because 'OpenMS::ConsensusMap::ColumnHeader' has user-provided 'OpenMS::ConsensusMap::ColumnHeader::ColumnHeader(const OpenMS::ConsensusMap::ColumnHeader&)' 133 | ColumnHeader(const ColumnHeader&); | ^~~~~~~~~~~~ [ 90%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/LABELING/ICPLLabeler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/LABELING/ICPLLabeler.cpp.o -MF CMakeFiles/OpenMS.dir/source/SIMULATION/LABELING/ICPLLabeler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/SIMULATION/LABELING/ICPLLabeler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/LABELING/ICPLLabeler.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/ICPLLabeler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/LABELING/ICPLLabeler.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/BaseLabeler.h:49:23: note: by 'OpenMS::BaseLabeler& OpenMS::BaseLabeler::operator=(const OpenMS::BaseLabeler&)' 49 | class OPENMS_DLLAPI BaseLabeler : | ^~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/SIMULATION/LABELING/ICPLLabeler.h:49:23: note: by 'OpenMS::ICPLLabeler& OpenMS::ICPLLabeler::operator=(const OpenMS::ICPLLabeler&)' 49 | class OPENMS_DLLAPI ICPLLabeler : | ^~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/LABELING/ICPLLabeler.cpp: In member function 'virtual void OpenMS::ICPLLabeler::postDigestHook(OpenMS::SimTypes::FeatureMapSimVector&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/SIMULATION/LABELING/ICPLLabeler.cpp:399:40: warning: implicitly-declared 'OpenMS::ConsensusMap::ColumnHeader& OpenMS::ConsensusMap::ColumnHeader::operator=(const OpenMS::ConsensusMap::ColumnHeader&)' is deprecated [-Wdeprecated-copy] 399 | consensus_.getColumnHeaders()[0] = map_description; | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:133:7: note: because 'OpenMS::ConsensusMap::ColumnHeader' has user-provided 'OpenMS::ConsensusMap::ColumnHeader::ColumnHeader(const OpenMS::ConsensusMap::ColumnHeader&)' 133 | ColumnHeader(const ColumnHeader&); | ^~~~~~~~~~~~ [ 90%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/QC/Contaminants.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/QC/Contaminants.cpp.o -MF CMakeFiles/OpenMS.dir/source/QC/Contaminants.cpp.o.d -o CMakeFiles/OpenMS.dir/source/QC/Contaminants.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/Contaminants.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/Contaminants.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/Contaminants.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/QCBase.h:236:20: warning: identifier 'requires' is a keyword in C++20 [-Wc++20-compat] 236 | virtual Status requires() const = 0; | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/Contaminants.h:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DBoundingBox.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ConvexHull2D.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 90%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/QC/FragmentMassError.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/QC/FragmentMassError.cpp.o -MF CMakeFiles/OpenMS.dir/source/QC/FragmentMassError.cpp.o.d -o CMakeFiles/OpenMS.dir/source/QC/FragmentMassError.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/FragmentMassError.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/FragmentMassError.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/FragmentMassError.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/QCBase.h:236:20: warning: identifier 'requires' is a keyword in C++20 [-Wc++20-compat] 236 | virtual Status requires() const = 0; | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/FragmentMassError.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/QCBase.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h:87:35: note: by 'OpenMS::TheoreticalSpectrumGenerator& OpenMS::TheoreticalSpectrumGenerator::operator=(const OpenMS::TheoreticalSpectrumGenerator&)' 87 | TheoreticalSpectrumGenerator& operator=(const TheoreticalSpectrumGenerator& tsg); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/WindowMower.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/FragmentMassError.cpp:45: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/WindowMower.h:69:18: note: by 'OpenMS::WindowMower& OpenMS::WindowMower::operator=(const OpenMS::WindowMower&)' 69 | WindowMower& operator=(const WindowMower& source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/FragmentMassError.cpp:46: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 90%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/QC/FWHM.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/QC/FWHM.cpp.o -MF CMakeFiles/OpenMS.dir/source/QC/FWHM.cpp.o.d -o CMakeFiles/OpenMS.dir/source/QC/FWHM.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/FWHM.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/FWHM.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/FWHM.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/QCBase.h:236:20: warning: identifier 'requires' is a keyword in C++20 [-Wc++20-compat] 236 | virtual Status requires() const = 0; | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/FWHM.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/QCBase.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 90%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/QC/MissedCleavages.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/QC/MissedCleavages.cpp.o -MF CMakeFiles/OpenMS.dir/source/QC/MissedCleavages.cpp.o.d -o CMakeFiles/OpenMS.dir/source/QC/MissedCleavages.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/MissedCleavages.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/MissedCleavages.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/MissedCleavages.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/QCBase.h:236:20: warning: identifier 'requires' is a keyword in C++20 [-Wc++20-compat] 236 | virtual Status requires() const = 0; | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/MissedCleavages.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/QCBase.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 90%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/QC/Ms2IdentificationRate.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/QC/Ms2IdentificationRate.cpp.o -MF CMakeFiles/OpenMS.dir/source/QC/Ms2IdentificationRate.cpp.o.d -o CMakeFiles/OpenMS.dir/source/QC/Ms2IdentificationRate.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/Ms2IdentificationRate.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/Ms2IdentificationRate.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/Ms2IdentificationRate.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/QCBase.h:236:20: warning: identifier 'requires' is a keyword in C++20 [-Wc++20-compat] 236 | virtual Status requires() const = 0; | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/Ms2IdentificationRate.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/QCBase.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 90%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/QC/Ms2SpectrumStats.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/QC/Ms2SpectrumStats.cpp.o -MF CMakeFiles/OpenMS.dir/source/QC/Ms2SpectrumStats.cpp.o.d -o CMakeFiles/OpenMS.dir/source/QC/Ms2SpectrumStats.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/Ms2SpectrumStats.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/Ms2SpectrumStats.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/Ms2SpectrumStats.cpp:34: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/QCBase.h:236:20: warning: identifier 'requires' is a keyword in C++20 [-Wc++20-compat] 236 | virtual Status requires() const = 0; | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/Ms2SpectrumStats.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/QCBase.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/Ms2SpectrumStats.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/Ms2SpectrumStats.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 90%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/QC/MzCalibration.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/QC/MzCalibration.cpp.o -MF CMakeFiles/OpenMS.dir/source/QC/MzCalibration.cpp.o.d -o CMakeFiles/OpenMS.dir/source/QC/MzCalibration.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/MzCalibration.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/MzCalibration.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/MzCalibration.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/QCBase.h:236:20: warning: identifier 'requires' is a keyword in C++20 [-Wc++20-compat] 236 | virtual Status requires() const = 0; | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/MzCalibration.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/QCBase.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 92%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/QC/PeptideMass.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/QC/PeptideMass.cpp.o -MF CMakeFiles/OpenMS.dir/source/QC/PeptideMass.cpp.o.d -o CMakeFiles/OpenMS.dir/source/QC/PeptideMass.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/PeptideMass.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/PeptideMass.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/PeptideMass.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/QCBase.h:236:20: warning: identifier 'requires' is a keyword in C++20 [-Wc++20-compat] 236 | virtual Status requires() const = 0; | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/PeptideMass.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/QCBase.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 92%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/QC/QCBase.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/QC/QCBase.cpp.o -MF CMakeFiles/OpenMS.dir/source/QC/QCBase.cpp.o.d -o CMakeFiles/OpenMS.dir/source/QC/QCBase.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/QCBase.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/QCBase.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/QCBase.h:236:20: warning: identifier 'requires' is a keyword in C++20 [-Wc++20-compat] 236 | virtual Status requires() const = 0; | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/QCBase.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/QCBase.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/QCBase.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 92%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/QC/RTAlignment.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/QC/RTAlignment.cpp.o -MF CMakeFiles/OpenMS.dir/source/QC/RTAlignment.cpp.o.d -o CMakeFiles/OpenMS.dir/source/QC/RTAlignment.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/RTAlignment.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/RTAlignment.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/RTAlignment.cpp:34: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/QCBase.h:236:20: warning: identifier 'requires' is a keyword in C++20 [-Wc++20-compat] 236 | virtual Status requires() const = 0; | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/RTAlignment.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/QCBase.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 92%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/QC/DBSuitability.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/QC/DBSuitability.cpp.o -MF CMakeFiles/OpenMS.dir/source/QC/DBSuitability.cpp.o.d -o CMakeFiles/OpenMS.dir/source/QC/DBSuitability.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/DBSuitability.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ID/IdentificationData.h:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/FalseDiscoveryRate.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/DBSuitability.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/FalseDiscoveryRate.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/FalseDiscoveryRate.h:183:25: note: by 'OpenMS::FalseDiscoveryRate& OpenMS::FalseDiscoveryRate::operator=(const OpenMS::FalseDiscoveryRate&)' 183 | FalseDiscoveryRate& operator=(const FalseDiscoveryRate&); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/DBSuitability.cpp:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/DBSuitability.h:66:23: note: by 'OpenMS::DBSuitability& OpenMS::DBSuitability::operator=(const OpenMS::DBSuitability&)' 66 | class OPENMS_DLLAPI DBSuitability: | ^~~~~~~~~~~~~ [ 92%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/QC/TIC.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/QC/TIC.cpp.o -MF CMakeFiles/OpenMS.dir/source/QC/TIC.cpp.o.d -o CMakeFiles/OpenMS.dir/source/QC/TIC.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/TIC.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/TIC.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/TIC.cpp:36: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/QCBase.h:236:20: warning: identifier 'requires' is a keyword in C++20 [-Wc++20-compat] 236 | virtual Status requires() const = 0; | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResampler.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResamplerAlign.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/TIC.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC/QCBase.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResampler.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResampler.h:61:23: note: by 'OpenMS::LinearResampler& OpenMS::LinearResampler::operator=(const OpenMS::LinearResampler&)' 61 | class OPENMS_DLLAPI LinearResampler : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResamplerAlign.h:57:23: note: by 'OpenMS::LinearResamplerAlign::operator=' 57 | class OPENMS_DLLAPI LinearResamplerAlign : | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/QC/TIC.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/MzTab.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 92%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/ChromatogramExtractor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/ChromatogramExtractor.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/ChromatogramExtractor.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/ChromatogramExtractor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/ChromatogramExtractor.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/ChromatogramExtractor.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/ChromatogramExtractor.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/stl_tree.h:63, from /usr/include/c++/13/map:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/ProgressLogger.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/ChromatogramExtractorAlgorithm.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/ChromatogramExtractor.h:37: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/ChromatogramExtractor.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathScoring.h:46, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathHelper.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/ChromatogramExtractor.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:157:17: note: by 'OpenMS::DIAScoring& OpenMS::DIAScoring::operator=(const OpenMS::DIAScoring&)' 157 | DIAScoring& operator=(const DIAScoring& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SONARScoring.h:83:19: note: by 'OpenMS::SONARScoring& OpenMS::SONARScoring::operator=(const OpenMS::SONARScoring&)' 83 | SONARScoring& operator=(const SONARScoring& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: note: by 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' 91 | virtual Fitter1D& operator=(const Fitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: warning: 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: note: by 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' 101 | virtual LevMarqFitter1D & operator=(const LevMarqFitter1D & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: warning: 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h:61:26: note: by 'virtual OpenMS::EmgFitter1D& OpenMS::EmgFitter1D::operator=(const OpenMS::EmgFitter1D&)' 61 | virtual EmgFitter1D& operator=(const EmgFitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgModel.h:68:24: note: by 'virtual OpenMS::EmgModel& OpenMS::EmgModel::operator=(const OpenMS::EmgModel&)' 68 | virtual EmgModel & operator=(const EmgModel & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/GaussFilter.h:74:23: note: by 'OpenMS::GaussFilter& OpenMS::GaussFilter::operator=(const OpenMS::GaussFilter&)' 74 | class OPENMS_DLLAPI GaussFilter : | ^~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:93:23: note: by 'OpenMS::MRMFeatureFinderScoring& OpenMS::MRMFeatureFinderScoring::operator=(const OpenMS::MRMFeatureFinderScoring&)' 93 | class OPENMS_DLLAPI MRMFeatureFinderScoring : | ^~~~~~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/ChromatogramExtractorAlgorithm.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/ChromatogramExtractorAlgorithm.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/ChromatogramExtractorAlgorithm.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/ChromatogramExtractorAlgorithm.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/ChromatogramExtractorAlgorithm.cpp [ 92%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/ConfidenceScoring.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/ConfidenceScoring.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/ConfidenceScoring.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/ConfidenceScoring.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/ConfidenceScoring.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/ConfidenceScoring.h:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/ConfidenceScoring.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/numeric:75, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/ConfidenceScoring.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/numeric:61: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/ConfidenceScoring.h:53: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/ConfidenceScoring.cpp: In member function 'void OpenMS::ConfidenceScoring::chooseDecoys_()': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/ConfidenceScoring.cpp:50:21: warning: 'void std::random_shuffle(_RAIter, _RAIter, _Generator&&) [with _RAIter = __gnu_cxx::__normal_iterator >; _Generator = boost::random::variate_generator&, boost::uniform_int<> >&]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 50 | random_shuffle(decoy_index_.begin(), decoy_index_.end(), rand_gen_); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /usr/include/boost/multi_index_container.hpp:19, from /usr/include/boost/bimap/detail/bimap_core.hpp:34, from /usr/include/boost/bimap/bimap.hpp:61, from /usr/include/boost/bimap.hpp:13, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/ConfidenceScoring.h:40: /usr/include/c++/13/bits/stl_algo.h:4620:5: note: declared here 4620 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~~~~ [ 92%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DIAHelper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DIAHelper.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DIAHelper.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DIAHelper.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DIAHelper.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DIAHelper.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/EmpiricalFormula.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/AASequence.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAHelper.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DIAHelper.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h:87:35: note: by 'OpenMS::TheoreticalSpectrumGenerator& OpenMS::TheoreticalSpectrumGenerator::operator=(const OpenMS::TheoreticalSpectrumGenerator&)' 87 | TheoreticalSpectrumGenerator& operator=(const TheoreticalSpectrumGenerator& tsg); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DIAHelper.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/stl_tree.h:63: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h:150:29: note: by 'OpenMS::FeatureFinderAlgorithm& OpenMS::FeatureFinderAlgorithm::operator=(const OpenMS::FeatureFinderAlgorithm&)' 150 | FeatureFinderAlgorithm& operator=(const FeatureFinderAlgorithm&); | ^~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAHelper.h:38: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DIAHelper.cpp:327:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 327 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 92%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DIAPrescoring.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DIAPrescoring.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DIAPrescoring.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DIAPrescoring.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DIAPrescoring.cpp In file included from /usr/include/boost/bind/detail/requires_cxx11.hpp:9, from /usr/include/boost/bind/bind.hpp:24, from /usr/include/boost/bind.hpp:29, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAPrescoring.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DIAPrescoring.cpp:35: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAPrescoring.h:46: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAPrescoring.h:64:23: note: by 'OpenMS::DiaPrescore::operator=' 64 | class OPENMS_DLLAPI DiaPrescore : | ^~~~~~~~~~~ [ 92%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DIAScoring.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DIAScoring.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DIAScoring.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DIAScoring.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DIAScoring.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DIAScoring.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:157:17: note: by 'OpenMS::DIAScoring& OpenMS::DIAScoring::operator=(const OpenMS::DIAScoring&)' 157 | DIAScoring& operator=(const DIAScoring& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/CoarseIsotopePatternGenerator.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DIAScoring.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /usr/include/boost/math/special_functions/math_fwd.hpp:26, from /usr/include/boost/math/special_functions/fpclassify.hpp:18, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DIAScoring.cpp:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/bits/specfun.h:43, from /usr/include/c++/13/cmath:3699, from /usr/include/boost/math/special_functions/fpclassify.hpp:16: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h:150:29: note: by 'OpenMS::FeatureFinderAlgorithm& OpenMS::FeatureFinderAlgorithm::operator=(const OpenMS::FeatureFinderAlgorithm&)' 150 | FeatureFinderAlgorithm& operator=(const FeatureFinderAlgorithm&); | ^~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:41: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DIAScoring.cpp:46: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAPrescoring.h:64:23: note: by 'OpenMS::DiaPrescore::operator=' 64 | class OPENMS_DLLAPI DiaPrescore : | ^~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DIAScoring.cpp:48: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h:87:35: note: by 'OpenMS::TheoreticalSpectrumGenerator& OpenMS::TheoreticalSpectrumGenerator::operator=(const OpenMS::TheoreticalSpectrumGenerator&)' 87 | TheoreticalSpectrumGenerator& operator=(const TheoreticalSpectrumGenerator& tsg); | ^~~~~~~~ [ 92%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/IonMobilityScoring.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/IonMobilityScoring.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/IonMobilityScoring.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/IonMobilityScoring.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/IonMobilityScoring.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathScoring.h:46, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/IonMobilityScoring.h:44, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/IonMobilityScoring.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:157:17: note: by 'OpenMS::DIAScoring& OpenMS::DIAScoring::operator=(const OpenMS::DIAScoring&)' 157 | DIAScoring& operator=(const DIAScoring& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/IonMobilityScoring.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/IonMobilityScoring.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/IonMobilityScoring.cpp:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SONARScoring.h:83:19: note: by 'OpenMS::SONARScoring& OpenMS::SONARScoring::operator=(const OpenMS::SONARScoring&)' 83 | SONARScoring& operator=(const SONARScoring& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/IonMobilityScoring.cpp:47: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 92%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MasstraceCorrelator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MasstraceCorrelator.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MasstraceCorrelator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MasstraceCorrelator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MasstraceCorrelator.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MasstraceCorrelator.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MasstraceCorrelator.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MasstraceCorrelator.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MasstraceCorrelator.h:53:23: note: by 'OpenMS::MasstraceCorrelator& OpenMS::MasstraceCorrelator::operator=(const OpenMS::MasstraceCorrelator&)' 53 | class OPENMS_DLLAPI MasstraceCorrelator : | ^~~~~~~~~~~~~~~~~~~ [ 94%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMAssay.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMAssay.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMAssay.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMAssay.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMAssay.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMAssay.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMAssay.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperimentHelper.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/boost/lexical_cast.hpp:26, from /usr/include/boost/math/tools/convert_from_string.hpp:17, from /usr/include/boost/math/constants/constants.hpp:14, from /usr/include/boost/math/special_functions/gamma.hpp:24, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/MathFunctions.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMIonSeries.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMAssay.h:40: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 94%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMDecoy.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMDecoy.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMDecoy.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMDecoy.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMDecoy.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMIonSeries.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMDecoy.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMDecoy.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperimentHelper.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMDecoy.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMDecoy.h:88:23: note: by 'OpenMS::MRMDecoy::operator=' 88 | class OPENMS_DLLAPI MRMDecoy : | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMDecoy.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMDecoy.cpp: In member function 'void OpenMS::MRMDecoy::generateDecoys(const OpenMS::TargetedExperiment&, OpenMS::TargetedExperiment&, const OpenMS::String&, double, bool, const OpenMS::String&, int, double, double, double, double, const std::vector&, const std::vector&, bool, bool, int) const': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMDecoy.cpp:401:26: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 401 | std::random_shuffle(item_list.begin(), item_list.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/EmpiricalFormula.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/AASequence.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperimentHelper.h:44: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 94%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMFeatureFilter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMFeatureFilter.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMFeatureFilter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMFeatureFilter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMFeatureFilter.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MRMFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureQC.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFilter.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMFeatureFilter.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DBoundingBox.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ConvexHull2D.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureQC.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFilter.h:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFilter.h:46: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFilter.h:62:23: note: by 'OpenMS::MRMFeatureFilter& OpenMS::MRMFeatureFilter::operator=(const OpenMS::MRMFeatureFilter&)' 62 | class OPENMS_DLLAPI MRMFeatureFilter : | ^~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMFeatureFilter.cpp: In member function 'void OpenMS::MRMFeatureFilter::FilterFeatureMap(OpenMS::FeatureMap&, const OpenMS::MRMFeatureQC&, const OpenMS::TargetedExperiment&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMFeatureFilter.cpp:208:70: warning: loop variable 'kv' of type 'const std::pair >&' binds to a temporary constructed from type 'const std::pair >' [-Wrange-loop-construct] 208 | for (const std::pair>& kv : filter_criteria.component_group_qcs.at(cg_qc_it).meta_value_qc) | ^~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMFeatureFilter.cpp:208:70: note: use non-reference type 'const std::pair >' to make the copy explicit or 'const std::pair >&' to prevent copying /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMFeatureFilter.cpp: In member function 'void OpenMS::MRMFeatureFilter::FilterFeatureMapPercRSD(OpenMS::FeatureMap&, const OpenMS::MRMFeatureQC&, const OpenMS::MRMFeatureQC&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMFeatureFilter.cpp:402:70: warning: loop variable 'kv' of type 'const std::pair >&' binds to a temporary constructed from type 'const std::pair >' [-Wrange-loop-construct] 402 | for (const std::pair>& kv : filter_criteria.component_group_qcs.at(cg_qc_it).meta_value_qc) | ^~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMFeatureFilter.cpp:402:70: note: use non-reference type 'const std::pair >' to make the copy explicit or 'const std::pair >&' to prevent copying [ 94%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathScoring.h:46, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:157:17: note: by 'OpenMS::DIAScoring& OpenMS::DIAScoring::operator=(const OpenMS::DIAScoring&)' 157 | DIAScoring& operator=(const DIAScoring& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SONARScoring.h:83:19: note: by 'OpenMS::SONARScoring& OpenMS::SONARScoring::operator=(const OpenMS::SONARScoring&)' 83 | SONARScoring& operator=(const SONARScoring& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathScoring.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: note: by 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' 91 | virtual Fitter1D& operator=(const Fitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: warning: 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: note: by 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' 101 | virtual LevMarqFitter1D & operator=(const LevMarqFitter1D & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: warning: 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h:61:26: note: by 'virtual OpenMS::EmgFitter1D& OpenMS::EmgFitter1D::operator=(const OpenMS::EmgFitter1D&)' 61 | virtual EmgFitter1D& operator=(const EmgFitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgModel.h:68:24: note: by 'virtual OpenMS::EmgModel& OpenMS::EmgModel::operator=(const OpenMS::EmgModel&)' 68 | virtual EmgModel & operator=(const EmgModel & source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/GaussFilter.h:43, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/GaussFilter.h:74:23: note: by 'OpenMS::GaussFilter& OpenMS::GaussFilter::operator=(const OpenMS::GaussFilter&)' 74 | class OPENMS_DLLAPI GaussFilter : | ^~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:54: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:93:23: note: by 'OpenMS::MRMFeatureFinderScoring& OpenMS::MRMFeatureFinderScoring::operator=(const OpenMS::MRMFeatureFinderScoring&)' 93 | class OPENMS_DLLAPI MRMFeatureFinderScoring : | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakIntegrator.h:44, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.cpp:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/EmgGradientDescent.h:64:23: note: by 'OpenMS::EmgGradientDescent& OpenMS::EmgGradientDescent::operator=(const OpenMS::EmgGradientDescent&)' 64 | class OPENMS_DLLAPI EmgGradientDescent : | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakIntegrator.h:72:23: note: by 'OpenMS::PeakIntegrator& OpenMS::PeakIntegrator::operator=(const OpenMS::PeakIntegrator&)' 72 | class OPENMS_DLLAPI PeakIntegrator : | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:44, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/SavitzkyGolayFilter.h:101:23: note: by 'OpenMS::SavitzkyGolayFilter& OpenMS::SavitzkyGolayFilter::operator=(const OpenMS::SavitzkyGolayFilter&)' 101 | class OPENMS_DLLAPI SavitzkyGolayFilter : | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:47: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:73:23: note: by 'OpenMS::PeakPickerHiRes& OpenMS::PeakPickerHiRes::operator=(const OpenMS::PeakPickerHiRes&)' 73 | class OPENMS_DLLAPI PeakPickerHiRes : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h: In instantiation of 'class OpenMS::SignalToNoiseEstimator': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:81:9: required from 'class OpenMS::SignalToNoiseEstimatorMedian' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:174:51: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h:85:37: note: by 'OpenMS::SignalToNoiseEstimator& OpenMS::SignalToNoiseEstimator::operator=(const OpenMS::SignalToNoiseEstimator&) [with Container = OpenMS::MSChromatogram]' 85 | inline SignalToNoiseEstimator & operator=(const SignalToNoiseEstimator & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h: In instantiation of 'class OpenMS::SignalToNoiseEstimatorMedian': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:174:51: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:153:43: note: by 'OpenMS::SignalToNoiseEstimatorMedian& OpenMS::SignalToNoiseEstimatorMedian::operator=(const OpenMS::SignalToNoiseEstimatorMedian&) [with Container = OpenMS::MSChromatogram]' 153 | inline SignalToNoiseEstimatorMedian & operator=(const SignalToNoiseEstimatorMedian & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:136:20: note: by 'OpenMS::PeakPickerMRM& OpenMS::PeakPickerMRM::operator=(const OpenMS::PeakPickerMRM&)' 136 | PeakPickerMRM& operator=(const PeakPickerMRM& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResamplerAlign.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.h:45: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResampler.h:61:23: note: by 'OpenMS::LinearResampler& OpenMS::LinearResampler::operator=(const OpenMS::LinearResampler&)' 61 | class OPENMS_DLLAPI LinearResampler : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResamplerAlign.h:57:23: note: by 'OpenMS::LinearResamplerAlign::operator=' 57 | class OPENMS_DLLAPI LinearResamplerAlign : | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.h:772:31: note: by 'OpenMS::MRMTransitionGroupPicker& OpenMS::MRMTransitionGroupPicker::operator=(const OpenMS::MRMTransitionGroupPicker&)' 772 | MRMTransitionGroupPicker& operator=(const MRMTransitionGroupPicker& rhs); | ^~~~~~~~ [ 94%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMFeaturePicker.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMFeaturePicker.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMFeaturePicker.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMFeaturePicker.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMFeaturePicker.cpp [ 94%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMFeatureQC.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMFeatureQC.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMFeatureQC.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMFeatureQC.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMFeatureQC.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MRMFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureQC.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMFeatureQC.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DBoundingBox.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ConvexHull2D.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureQC.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 94%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMBatchFeatureSelector.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMBatchFeatureSelector.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMBatchFeatureSelector.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMBatchFeatureSelector.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMBatchFeatureSelector.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureSelector.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMBatchFeatureSelector.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMBatchFeatureSelector.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/LPWrapper.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureSelector.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 94%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMFeatureSelector.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMFeatureSelector.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMFeatureSelector.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMFeatureSelector.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMFeatureSelector.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureSelector.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMFeatureSelector.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/LPWrapper.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureSelector.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 94%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMIonSeries.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMIonSeries.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMIonSeries.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMIonSeries.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMIonSeries.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMIonSeries.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMIonSeries.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperimentHelper.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 94%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMRTNormalizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMRTNormalizer.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMRTNormalizer.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMRTNormalizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMRTNormalizer.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMRTNormalizer.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h: In static member function 'static std::vector > OpenMS::Math::RANSAC::ransac(const std::vector >&, size_t, size_t, double, size_t, bool, int (*)(int))': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:182:32: warning: 'void std::random_shuffle(_RAIter, _RAIter, _Generator&&) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Generator = int (*&)(int)]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 182 | std::random_shuffle(pairs_shuffled.begin(), pairs_shuffled.end(), rng); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/STATISTICS/LinearRegression.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMRTNormalizer.cpp:36: /usr/include/c++/13/bits/stl_algo.h:4620:5: note: declared here 4620 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:184:32: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 184 | std::random_shuffle(pairs_shuffled.begin(), pairs_shuffled.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h: In instantiation of 'static std::vector > OpenMS::Math::RANSAC::ransac(const std::vector >&, size_t, size_t, double, size_t, bool, int (*)(int)) [with TModelType = OpenMS::Math::RansacModelLinear; size_t = long unsigned int]': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMRTNormalizer.cpp:69:102: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:182:32: warning: 'void std::random_shuffle(_RAIter, _RAIter, _Generator&&) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Generator = int (*&)(int)]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 182 | std::random_shuffle(pairs_shuffled.begin(), pairs_shuffled.end(), rng); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4620:5: note: declared here 4620 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:182:32: warning: 'void std::random_shuffle(_RAIter, _RAIter, _Generator&&) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Generator = int (*&)(int)]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 182 | std::random_shuffle(pairs_shuffled.begin(), pairs_shuffled.end(), rng); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4620:5: note: declared here 4620 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:182:32: warning: 'void std::random_shuffle(_RAIter, _RAIter, _Generator&&) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Generator = int (*&)(int)]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 182 | std::random_shuffle(pairs_shuffled.begin(), pairs_shuffled.end(), rng); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4620:5: note: declared here 4620 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:184:32: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 184 | std::random_shuffle(pairs_shuffled.begin(), pairs_shuffled.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:184:32: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 184 | std::random_shuffle(pairs_shuffled.begin(), pairs_shuffled.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/RANSAC.h:184:32: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 184 | std::random_shuffle(pairs_shuffled.begin(), pairs_shuffled.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 94%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MRMFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MRMTransitionGroup.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MRMTransitionGroup.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakIntegrator.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakIntegrator.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/EmgGradientDescent.h:64:23: note: by 'OpenMS::EmgGradientDescent& OpenMS::EmgGradientDescent::operator=(const OpenMS::EmgGradientDescent&)' 64 | class OPENMS_DLLAPI EmgGradientDescent : | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakIntegrator.h:72:23: note: by 'OpenMS::PeakIntegrator& OpenMS::PeakIntegrator::operator=(const OpenMS::PeakIntegrator&)' 72 | class OPENMS_DLLAPI PeakIntegrator : | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/SavitzkyGolayFilter.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:44, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/SavitzkyGolayFilter.h:101:23: note: by 'OpenMS::SavitzkyGolayFilter& OpenMS::SavitzkyGolayFilter::operator=(const OpenMS::SavitzkyGolayFilter&)' 101 | class OPENMS_DLLAPI SavitzkyGolayFilter : | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:45: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/GaussFilter.h:74:23: note: by 'OpenMS::GaussFilter& OpenMS::GaussFilter::operator=(const OpenMS::GaussFilter&)' 74 | class OPENMS_DLLAPI GaussFilter : | ^~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:47: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:73:23: note: by 'OpenMS::PeakPickerHiRes& OpenMS::PeakPickerHiRes::operator=(const OpenMS::PeakPickerHiRes&)' 73 | class OPENMS_DLLAPI PeakPickerHiRes : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h: In instantiation of 'class OpenMS::SignalToNoiseEstimator': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:81:9: required from 'class OpenMS::SignalToNoiseEstimatorMedian' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:174:51: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h:85:37: note: by 'OpenMS::SignalToNoiseEstimator& OpenMS::SignalToNoiseEstimator::operator=(const OpenMS::SignalToNoiseEstimator&) [with Container = OpenMS::MSChromatogram]' 85 | inline SignalToNoiseEstimator & operator=(const SignalToNoiseEstimator & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h: In instantiation of 'class OpenMS::SignalToNoiseEstimatorMedian': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:174:51: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:153:43: note: by 'OpenMS::SignalToNoiseEstimatorMedian& OpenMS::SignalToNoiseEstimatorMedian::operator=(const OpenMS::SignalToNoiseEstimatorMedian&) [with Container = OpenMS::MSChromatogram]' 153 | inline SignalToNoiseEstimatorMedian & operator=(const SignalToNoiseEstimatorMedian & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:136:20: note: by 'OpenMS::PeakPickerMRM& OpenMS::PeakPickerMRM::operator=(const OpenMS::PeakPickerMRM&)' 136 | PeakPickerMRM& operator=(const PeakPickerMRM& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResamplerAlign.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.h:45: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResampler.h:61:23: note: by 'OpenMS::LinearResampler& OpenMS::LinearResampler::operator=(const OpenMS::LinearResampler&)' 61 | class OPENMS_DLLAPI LinearResampler : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResamplerAlign.h:57:23: note: by 'OpenMS::LinearResamplerAlign::operator=' 57 | class OPENMS_DLLAPI LinearResamplerAlign : | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.h:772:31: note: by 'OpenMS::MRMTransitionGroupPicker& OpenMS::MRMTransitionGroupPicker::operator=(const OpenMS::MRMTransitionGroupPicker&)' 772 | MRMTransitionGroupPicker& operator=(const MRMTransitionGroupPicker& rhs); | ^~~~~~~~ [ 94%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/OpenSwathHelper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/OpenSwathHelper.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/OpenSwathHelper.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/OpenSwathHelper.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/OpenSwathHelper.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathHelper.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/OpenSwathHelper.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathHelper.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathScoring.h:46, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathHelper.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:157:17: note: by 'OpenMS::DIAScoring& OpenMS::DIAScoring::operator=(const OpenMS::DIAScoring&)' 157 | DIAScoring& operator=(const DIAScoring& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SONARScoring.h:83:19: note: by 'OpenMS::SONARScoring& OpenMS::SONARScoring::operator=(const OpenMS::SONARScoring&)' 83 | SONARScoring& operator=(const SONARScoring& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: note: by 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' 91 | virtual Fitter1D& operator=(const Fitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: warning: 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: note: by 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' 101 | virtual LevMarqFitter1D & operator=(const LevMarqFitter1D & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: warning: 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h:61:26: note: by 'virtual OpenMS::EmgFitter1D& OpenMS::EmgFitter1D::operator=(const OpenMS::EmgFitter1D&)' 61 | virtual EmgFitter1D& operator=(const EmgFitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgModel.h:68:24: note: by 'virtual OpenMS::EmgModel& OpenMS::EmgModel::operator=(const OpenMS::EmgModel&)' 68 | virtual EmgModel & operator=(const EmgModel & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/GaussFilter.h:74:23: note: by 'OpenMS::GaussFilter& OpenMS::GaussFilter::operator=(const OpenMS::GaussFilter&)' 74 | class OPENMS_DLLAPI GaussFilter : | ^~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:93:23: note: by 'OpenMS::MRMFeatureFinderScoring& OpenMS::MRMFeatureFinderScoring::operator=(const OpenMS::MRMFeatureFinderScoring&)' 93 | class OPENMS_DLLAPI MRMFeatureFinderScoring : | ^~~~~~~~~~~~~~~~~~~~~~~ [ 94%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/OpenSwathScores.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/OpenSwathScores.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/OpenSwathScores.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/OpenSwathScores.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/OpenSwathScores.cpp [ 96%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/OpenSwathScoring.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/OpenSwathScoring.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/OpenSwathScoring.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/OpenSwathScoring.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/OpenSwathScoring.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathScoring.h:46, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/OpenSwathScoring.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:157:17: note: by 'OpenMS::DIAScoring& OpenMS::DIAScoring::operator=(const OpenMS::DIAScoring&)' 157 | DIAScoring& operator=(const DIAScoring& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/OpenSwathScoring.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathScoring.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/OpenSwathScoring.cpp:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SONARScoring.h:83:19: note: by 'OpenMS::SONARScoring& OpenMS::SONARScoring::operator=(const OpenMS::SONARScoring&)' 83 | SONARScoring& operator=(const SONARScoring& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/OpenSwathScoring.cpp:47: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 96%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/OpenSwathTSVWriter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/OpenSwathTSVWriter.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/OpenSwathTSVWriter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/OpenSwathTSVWriter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/OpenSwathTSVWriter.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathTSVWriter.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/OpenSwathTSVWriter.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/TransitionExperiment.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathTSVWriter.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 96%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/OpenSwathOSWWriter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/OpenSwathOSWWriter.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/OpenSwathOSWWriter.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/OpenSwathOSWWriter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/OpenSwathOSWWriter.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathOSWWriter.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/OpenSwathOSWWriter.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/TransitionExperiment.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathOSWWriter.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 96%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/OpenSwathWorkflow.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/OpenSwathWorkflow.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/OpenSwathWorkflow.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/OpenSwathWorkflow.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/OpenSwathWorkflow.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathWorkflow.h:46, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/OpenSwathWorkflow.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathWorkflow.h:38: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathHelper.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathWorkflow.h:53: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathScoring.h:46, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathHelper.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:157:17: note: by 'OpenMS::DIAScoring& OpenMS::DIAScoring::operator=(const OpenMS::DIAScoring&)' 157 | DIAScoring& operator=(const DIAScoring& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SONARScoring.h:83:19: note: by 'OpenMS::SONARScoring& OpenMS::SONARScoring::operator=(const OpenMS::SONARScoring&)' 83 | SONARScoring& operator=(const SONARScoring& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: note: by 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' 91 | virtual Fitter1D& operator=(const Fitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: warning: 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: note: by 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' 101 | virtual LevMarqFitter1D & operator=(const LevMarqFitter1D & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: warning: 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h:61:26: note: by 'virtual OpenMS::EmgFitter1D& OpenMS::EmgFitter1D::operator=(const OpenMS::EmgFitter1D&)' 61 | virtual EmgFitter1D& operator=(const EmgFitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgModel.h:68:24: note: by 'virtual OpenMS::EmgModel& OpenMS::EmgModel::operator=(const OpenMS::EmgModel&)' 68 | virtual EmgModel & operator=(const EmgModel & source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/GaussFilter.h:74:23: note: by 'OpenMS::GaussFilter& OpenMS::GaussFilter::operator=(const OpenMS::GaussFilter&)' 74 | class OPENMS_DLLAPI GaussFilter : | ^~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:93:23: note: by 'OpenMS::MRMFeatureFinderScoring& OpenMS::MRMFeatureFinderScoring::operator=(const OpenMS::MRMFeatureFinderScoring&)' 93 | class OPENMS_DLLAPI MRMFeatureFinderScoring : | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakIntegrator.h:44, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathWorkflow.h:63: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/EmgGradientDescent.h:64:23: note: by 'OpenMS::EmgGradientDescent& OpenMS::EmgGradientDescent::operator=(const OpenMS::EmgGradientDescent&)' 64 | class OPENMS_DLLAPI EmgGradientDescent : | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakIntegrator.h:72:23: note: by 'OpenMS::PeakIntegrator& OpenMS::PeakIntegrator::operator=(const OpenMS::PeakIntegrator&)' 72 | class OPENMS_DLLAPI PeakIntegrator : | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:44, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/SavitzkyGolayFilter.h:101:23: note: by 'OpenMS::SavitzkyGolayFilter& OpenMS::SavitzkyGolayFilter::operator=(const OpenMS::SavitzkyGolayFilter&)' 101 | class OPENMS_DLLAPI SavitzkyGolayFilter : | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:47: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:73:23: note: by 'OpenMS::PeakPickerHiRes& OpenMS::PeakPickerHiRes::operator=(const OpenMS::PeakPickerHiRes&)' 73 | class OPENMS_DLLAPI PeakPickerHiRes : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h: In instantiation of 'class OpenMS::SignalToNoiseEstimator': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:81:9: required from 'class OpenMS::SignalToNoiseEstimatorMedian' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:174:51: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h:85:37: note: by 'OpenMS::SignalToNoiseEstimator& OpenMS::SignalToNoiseEstimator::operator=(const OpenMS::SignalToNoiseEstimator&) [with Container = OpenMS::MSChromatogram]' 85 | inline SignalToNoiseEstimator & operator=(const SignalToNoiseEstimator & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h: In instantiation of 'class OpenMS::SignalToNoiseEstimatorMedian': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:174:51: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:153:43: note: by 'OpenMS::SignalToNoiseEstimatorMedian& OpenMS::SignalToNoiseEstimatorMedian::operator=(const OpenMS::SignalToNoiseEstimatorMedian&) [with Container = OpenMS::MSChromatogram]' 153 | inline SignalToNoiseEstimatorMedian & operator=(const SignalToNoiseEstimatorMedian & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:136:20: note: by 'OpenMS::PeakPickerMRM& OpenMS::PeakPickerMRM::operator=(const OpenMS::PeakPickerMRM&)' 136 | PeakPickerMRM& operator=(const PeakPickerMRM& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResamplerAlign.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.h:45: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResampler.h:61:23: note: by 'OpenMS::LinearResampler& OpenMS::LinearResampler::operator=(const OpenMS::LinearResampler&)' 61 | class OPENMS_DLLAPI LinearResampler : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResamplerAlign.h:57:23: note: by 'OpenMS::LinearResamplerAlign::operator=' 57 | class OPENMS_DLLAPI LinearResamplerAlign : | ^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.h:772:31: note: by 'OpenMS::MRMTransitionGroupPicker& OpenMS::MRMTransitionGroupPicker::operator=(const OpenMS::MRMTransitionGroupPicker&)' 772 | MRMTransitionGroupPicker& operator=(const MRMTransitionGroupPicker& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathWorkflow.h:64: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SwathMapMassCorrection.h:52:23: note: by 'OpenMS::SwathMapMassCorrection& OpenMS::SwathMapMassCorrection::operator=(const OpenMS::SwathMapMassCorrection&)' 52 | class OPENMS_DLLAPI SwathMapMassCorrection : | ^~~~~~~~~~~~~~~~~~~~~~ [ 96%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/PeakIntegrator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/PeakIntegrator.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/PeakIntegrator.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/PeakIntegrator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/PeakIntegrator.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakIntegrator.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/PeakIntegrator.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/LogStream.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakIntegrator.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakIntegrator.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakIntegrator.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakIntegrator.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/EmgGradientDescent.h:64:23: note: by 'OpenMS::EmgGradientDescent& OpenMS::EmgGradientDescent::operator=(const OpenMS::EmgGradientDescent&)' 64 | class OPENMS_DLLAPI EmgGradientDescent : | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakIntegrator.h:72:23: note: by 'OpenMS::PeakIntegrator& OpenMS::PeakIntegrator::operator=(const OpenMS::PeakIntegrator&)' 72 | class OPENMS_DLLAPI PeakIntegrator : | ^~~~~~~~~~~~~~ [ 96%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/PeakPickerMRM.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/PeakPickerMRM.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/PeakPickerMRM.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/PeakPickerMRM.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/PeakPickerMRM.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/PeakPickerMRM.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/SavitzkyGolayFilter.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/algorithm:60, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/SavitzkyGolayFilter.h:101:23: note: by 'OpenMS::SavitzkyGolayFilter& OpenMS::SavitzkyGolayFilter::operator=(const OpenMS::SavitzkyGolayFilter&)' 101 | class OPENMS_DLLAPI SavitzkyGolayFilter : | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:45: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/GaussFilter.h:74:23: note: by 'OpenMS::GaussFilter& OpenMS::GaussFilter::operator=(const OpenMS::GaussFilter&)' 74 | class OPENMS_DLLAPI GaussFilter : | ^~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:47: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:73:23: note: by 'OpenMS::PeakPickerHiRes& OpenMS::PeakPickerHiRes::operator=(const OpenMS::PeakPickerHiRes&)' 73 | class OPENMS_DLLAPI PeakPickerHiRes : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h: In instantiation of 'class OpenMS::SignalToNoiseEstimator': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:81:9: required from 'class OpenMS::SignalToNoiseEstimatorMedian' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:174:51: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h:85:37: note: by 'OpenMS::SignalToNoiseEstimator& OpenMS::SignalToNoiseEstimator::operator=(const OpenMS::SignalToNoiseEstimator&) [with Container = OpenMS::MSChromatogram]' 85 | inline SignalToNoiseEstimator & operator=(const SignalToNoiseEstimator & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h: In instantiation of 'class OpenMS::SignalToNoiseEstimatorMedian': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:174:51: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:153:43: note: by 'OpenMS::SignalToNoiseEstimatorMedian& OpenMS::SignalToNoiseEstimatorMedian::operator=(const OpenMS::SignalToNoiseEstimatorMedian&) [with Container = OpenMS::MSChromatogram]' 153 | inline SignalToNoiseEstimatorMedian & operator=(const SignalToNoiseEstimatorMedian & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h:136:20: note: by 'OpenMS::PeakPickerMRM& OpenMS::PeakPickerMRM::operator=(const OpenMS::PeakPickerMRM&)' 136 | PeakPickerMRM& operator=(const PeakPickerMRM& rhs); | ^~~~~~~~ [ 96%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/SONARScoring.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/SONARScoring.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/SONARScoring.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/SONARScoring.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/SONARScoring.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SONARScoring.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/SONARScoring.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathScoring.h:46, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SONARScoring.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:157:17: note: by 'OpenMS::DIAScoring& OpenMS::DIAScoring::operator=(const OpenMS::DIAScoring&)' 157 | DIAScoring& operator=(const DIAScoring& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SONARScoring.h:83:19: note: by 'OpenMS::SONARScoring& OpenMS::SONARScoring::operator=(const OpenMS::SONARScoring&)' 83 | SONARScoring& operator=(const SONARScoring& rhs); | ^~~~~~~~ [ 96%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/SwathMapMassCorrection.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/SwathMapMassCorrection.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/SwathMapMassCorrection.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/SwathMapMassCorrection.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/SwathMapMassCorrection.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/OpenSwathScoring.h:46, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SwathMapMassCorrection.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/SwathMapMassCorrection.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h:157:17: note: by 'OpenMS::DIAScoring& OpenMS::DIAScoring::operator=(const OpenMS::DIAScoring&)' 157 | DIAScoring& operator=(const DIAScoring& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SONARScoring.h:83:19: note: by 'OpenMS::SONARScoring& OpenMS::SONARScoring::operator=(const OpenMS::SONARScoring&)' 83 | SONARScoring& operator=(const SONARScoring& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:44: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SwathMapMassCorrection.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: note: by 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' 91 | virtual Fitter1D& operator=(const Fitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h:91:23: warning: 'virtual OpenMS::Fitter1D& OpenMS::Fitter1D::operator=(const OpenMS::Fitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: note: by 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' 101 | virtual LevMarqFitter1D & operator=(const LevMarqFitter1D & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h:101:31: warning: 'virtual OpenMS::LevMarqFitter1D& OpenMS::LevMarqFitter1D::operator=(const OpenMS::LevMarqFitter1D&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h:61:26: note: by 'virtual OpenMS::EmgFitter1D& OpenMS::EmgFitter1D::operator=(const OpenMS::EmgFitter1D&)' 61 | virtual EmgFitter1D& operator=(const EmgFitter1D& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h: In instantiation of 'class OpenMS::BaseModel<1>': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:55:12: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgModel.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: note: by 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' 83 | virtual BaseModel & operator=(const BaseModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BaseModel.h:83:25: warning: 'OpenMS::BaseModel& OpenMS::BaseModel::operator=(const OpenMS::BaseModel&) [with unsigned int D = 1]' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: note: by 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' 88 | virtual InterpolationModel & operator=(const InterpolationModel & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h:88:34: warning: 'virtual OpenMS::InterpolationModel& OpenMS::InterpolationModel::operator=(const OpenMS::InterpolationModel&)' was hidden [-Woverloaded-virtual=] /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgModel.h:68:24: note: by 'virtual OpenMS::EmgModel& OpenMS::EmgModel::operator=(const OpenMS::EmgModel&)' 68 | virtual EmgModel & operator=(const EmgModel & source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/GaussFilter.h:43, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algobase.h:65, from /usr/include/c++/13/vector:62: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/GaussFilter.h:74:23: note: by 'OpenMS::GaussFilter& OpenMS::GaussFilter::operator=(const OpenMS::GaussFilter&)' 74 | class OPENMS_DLLAPI GaussFilter : | ^~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:54: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h:93:23: note: by 'OpenMS::MRMFeatureFinderScoring& OpenMS::MRMFeatureFinderScoring::operator=(const OpenMS::MRMFeatureFinderScoring&)' 93 | class OPENMS_DLLAPI MRMFeatureFinderScoring : | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SwathMapMassCorrection.h:52:23: note: by 'OpenMS::SwathMapMassCorrection& OpenMS::SwathMapMassCorrection::operator=(const OpenMS::SwathMapMassCorrection&)' 52 | class OPENMS_DLLAPI SwathMapMassCorrection : | ^~~~~~~~~~~~~~~~~~~~~~ [ 96%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/SwathWindowLoader.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/SwathWindowLoader.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/SwathWindowLoader.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/SwathWindowLoader.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/SwathWindowLoader.cpp [ 96%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/SwathQC.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/SwathQC.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/SwathQC.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/SwathQC.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/SwathQC.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/SwathQC.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/SwathMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SwathQC.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/SwathQC.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/SwathQC.cpp:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:73:23: note: by 'OpenMS::PeakPickerHiRes& OpenMS::PeakPickerHiRes::operator=(const OpenMS::PeakPickerHiRes&)' 73 | class OPENMS_DLLAPI PeakPickerHiRes : | ^~~~~~~~~~~~~~~ [ 96%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/SpectrumAddition.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/SpectrumAddition.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/SpectrumAddition.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/SpectrumAddition.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/SpectrumAddition.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SpectrumAddition.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/SpectrumAddition.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/SpectrumAddition.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/SpectrumAddition.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResampler.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResamplerAlign.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/SpectrumAddition.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResampler.h:61:23: note: by 'OpenMS::LinearResampler& OpenMS::LinearResampler::operator=(const OpenMS::LinearResampler&)' 61 | class OPENMS_DLLAPI LinearResampler : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS/LinearResamplerAlign.h:57:23: note: by 'OpenMS::LinearResamplerAlign::operator=' 57 | class OPENMS_DLLAPI LinearResamplerAlign : | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h:43, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/SpectrumAddition.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 96%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/TargetedSpectraExtractor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/TargetedSpectraExtractor.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/TargetedSpectraExtractor.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/TargetedSpectraExtractor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/TargetedSpectraExtractor.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/TargetedSpectraExtractor.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/TargetedSpectraExtractor.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperimentHelper.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrum.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectralContrastAngle.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/TargetedSpectraExtractor.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.h:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectrumCompareFunctor.h:73:35: note: by 'OpenMS::BinnedSpectrumCompareFunctor& OpenMS::BinnedSpectrumCompareFunctor::operator=(const OpenMS::BinnedSpectrumCompareFunctor&)' 73 | BinnedSpectrumCompareFunctor& operator=(const BinnedSpectrumCompareFunctor& source); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA/BinnedSpectralContrastAngle.h:73:34: note: by 'OpenMS::BinnedSpectralContrastAngle& OpenMS::BinnedSpectralContrastAngle::operator=(const OpenMS::BinnedSpectralContrastAngle&)' 73 | BinnedSpectralContrastAngle& operator=(const BinnedSpectralContrastAngle& source); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/TargetedSpectraExtractor.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/TargetedSpectraExtractor.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/TargetedSpectraExtractor.h:69:23: note: by 'OpenMS::TargetedSpectraExtractor& OpenMS::TargetedSpectraExtractor::operator=(const OpenMS::TargetedSpectraExtractor&)' 69 | class OPENMS_DLLAPI TargetedSpectraExtractor : | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/TargetedSpectraExtractor.cpp:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/GaussFilter.h:74:23: note: by 'OpenMS::GaussFilter& OpenMS::GaussFilter::operator=(const OpenMS::GaussFilter&)' 74 | class OPENMS_DLLAPI GaussFilter : | ^~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/TargetedSpectraExtractor.cpp:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING/SavitzkyGolayFilter.h:101:23: note: by 'OpenMS::SavitzkyGolayFilter& OpenMS::SavitzkyGolayFilter::operator=(const OpenMS::SavitzkyGolayFilter&)' 101 | class OPENMS_DLLAPI SavitzkyGolayFilter : | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/TargetedSpectraExtractor.cpp:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h:73:23: note: by 'OpenMS::PeakPickerHiRes& OpenMS::PeakPickerHiRes::operator=(const OpenMS::PeakPickerHiRes&)' 73 | class OPENMS_DLLAPI PeakPickerHiRes : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h: In instantiation of 'class OpenMS::SignalToNoiseEstimator': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:81:9: required from 'class OpenMS::SignalToNoiseEstimatorMedian' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/TargetedSpectraExtractor.cpp:322:48: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/TargetedSpectraExtractor.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h:85:37: note: by 'OpenMS::SignalToNoiseEstimator& OpenMS::SignalToNoiseEstimator::operator=(const OpenMS::SignalToNoiseEstimator&) [with Container = OpenMS::MSSpectrum]' 85 | inline SignalToNoiseEstimator & operator=(const SignalToNoiseEstimator & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h: In instantiation of 'class OpenMS::SignalToNoiseEstimatorMedian': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/TargetedSpectraExtractor.cpp:322:48: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:153:43: note: by 'OpenMS::SignalToNoiseEstimatorMedian& OpenMS::SignalToNoiseEstimatorMedian::operator=(const OpenMS::SignalToNoiseEstimatorMedian&) [with Container = OpenMS::MSSpectrum]' 153 | inline SignalToNoiseEstimatorMedian & operator=(const SignalToNoiseEstimatorMedian & source) | ^~~~~~~~ [ 96%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/TransitionTSVFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/TransitionTSVFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/TransitionTSVFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/TransitionTSVFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/TransitionTSVFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/TransitionTSVFile.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/TransitionTSVFile.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperimentHelper.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/TransitionTSVFile.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/TransitionTSVFile.h:144:23: note: by 'OpenMS::TransitionTSVFile& OpenMS::TransitionTSVFile::operator=(const OpenMS::TransitionTSVFile&)' 144 | class OPENMS_DLLAPI TransitionTSVFile : | ^~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/TransitionTSVFile.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 96%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/TransitionPQPFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/TransitionPQPFile.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/TransitionPQPFile.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/TransitionPQPFile.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/TransitionPQPFile.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/TransitionTSVFile.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/TransitionPQPFile.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/TransitionPQPFile.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperimentHelper.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/TransitionTSVFile.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/TransitionTSVFile.h:144:23: note: by 'OpenMS::TransitionTSVFile& OpenMS::TransitionTSVFile::operator=(const OpenMS::TransitionTSVFile&)' 144 | class OPENMS_DLLAPI TransitionTSVFile : | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/TransitionPQPFile.h:219:23: note: by 'OpenMS::TransitionPQPFile& OpenMS::TransitionPQPFile::operator=(const OpenMS::TransitionPQPFile&)' 219 | class OPENMS_DLLAPI TransitionPQPFile : | ^~~~~~~~~~~~~~~~~ [ 98%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/ITransition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.cpp:37: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h: In instantiation of 'class OpenMS::SignalToNoiseEstimator': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:81:9: required from 'class OpenMS::SignalToNoiseEstimatorMedian' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.h:221:56: required from 'class OpenMS::SignalToNoiseOpenMS' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.cpp:156:64: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h:85:37: note: by 'OpenMS::SignalToNoiseEstimator& OpenMS::SignalToNoiseEstimator::operator=(const OpenMS::SignalToNoiseEstimator&) [with Container = OpenMS::MSSpectrum]' 85 | inline SignalToNoiseEstimator & operator=(const SignalToNoiseEstimator & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h: In instantiation of 'class OpenMS::SignalToNoiseEstimatorMedian': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.h:221:56: required from 'class OpenMS::SignalToNoiseOpenMS' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.cpp:156:64: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:153:43: note: by 'OpenMS::SignalToNoiseEstimatorMedian& OpenMS::SignalToNoiseEstimatorMedian::operator=(const OpenMS::SignalToNoiseEstimatorMedian&) [with Container = OpenMS::MSSpectrum]' 153 | inline SignalToNoiseEstimatorMedian & operator=(const SignalToNoiseEstimatorMedian & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h: In instantiation of 'class OpenMS::SignalToNoiseEstimator': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:81:9: required from 'class OpenMS::SignalToNoiseEstimatorMedian' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.h:221:56: required from 'class OpenMS::SignalToNoiseOpenMS' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.cpp:157:70: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimator.h:85:37: note: by 'OpenMS::SignalToNoiseEstimator& OpenMS::SignalToNoiseEstimator::operator=(const OpenMS::SignalToNoiseEstimator&) [with Container = OpenMS::MSChromatogram]' 85 | inline SignalToNoiseEstimator & operator=(const SignalToNoiseEstimator & source) | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h: In instantiation of 'class OpenMS::SignalToNoiseEstimatorMedian': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.h:221:56: required from 'class OpenMS::SignalToNoiseOpenMS' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.cpp:157:70: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DefaultParamHandler.h:105:34: warning: 'virtual OpenMS::DefaultParamHandler& OpenMS::DefaultParamHandler::operator=(const OpenMS::DefaultParamHandler&)' was hidden [-Woverloaded-virtual=] 105 | virtual DefaultParamHandler& operator=(const DefaultParamHandler& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION/SignalToNoiseEstimatorMedian.h:153:43: note: by 'OpenMS::SignalToNoiseEstimatorMedian& OpenMS::SignalToNoiseEstimatorMedian::operator=(const OpenMS::SignalToNoiseEstimatorMedian&) [with Container = OpenMS::MSChromatogram]' 153 | inline SignalToNoiseEstimatorMedian & operator=(const SignalToNoiseEstimatorMedian & source) | ^~~~~~~~ [ 98%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMS.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMS.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMS.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMS.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMS.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMS.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMS.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMS.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMS.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 98%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSCached.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSCached.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSCached.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSCached.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSCached.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSCached.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSCached.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSCached.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSCached.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 98%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSInMemory.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSInMemory.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSInMemory.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSInMemory.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSInMemory.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSInMemory.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSInMemory.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSInMemory.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSInMemory.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 98%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessSqMass.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessSqMass.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessSqMass.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessSqMass.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessSqMass.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessSqMass.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessSqMass.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:38: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessSqMass.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessSqMass.h:40: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 98%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessTransforming.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessTransforming.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessTransforming.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessTransforming.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessTransforming.cpp [ 98%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessQuadMZTransforming.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessQuadMZTransforming.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessQuadMZTransforming.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessQuadMZTransforming.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessQuadMZTransforming.cpp [ 98%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h:37: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/TARGETED/TargetedExperiment.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h:43: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MRM/ReactionMonitoringTransition.h:284:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 284 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 98%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SimpleOpenMSSpectraAccessFactory.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SimpleOpenMSSpectraAccessFactory.cpp.o -MF CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SimpleOpenMSSpectraAccessFactory.cpp.o.d -o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SimpleOpenMSSpectraAccessFactory.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/SimpleOpenMSSpectraAccessFactory.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SimpleOpenMSSpectraAccessFactory.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/ANALYSIS/OPENSWATH/DATAACCESS/SimpleOpenMSSpectraAccessFactory.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SimpleOpenMSSpectraAccessFactory.h:37: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 98%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/APPLICATIONS/INIUpdater.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/APPLICATIONS/INIUpdater.cpp.o -MF CMakeFiles/OpenMS.dir/source/APPLICATIONS/INIUpdater.cpp.o.d -o CMakeFiles/OpenMS.dir/source/APPLICATIONS/INIUpdater.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/APPLICATIONS/INIUpdater.cpp [ 98%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/APPLICATIONS/ToolHandler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/APPLICATIONS/ToolHandler.cpp.o -MF CMakeFiles/OpenMS.dir/source/APPLICATIONS/ToolHandler.cpp.o.d -o CMakeFiles/OpenMS.dir/source/APPLICATIONS/ToolHandler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/APPLICATIONS/ToolHandler.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/APPLICATIONS/ToolHandler.cpp: In static member function 'static OpenMS::Internal::ToolDescription OpenMS::ToolHandler::getExternalTools_()': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/APPLICATIONS/ToolHandler.cpp:321:12: warning: implicitly-declared 'OpenMS::Internal::ToolDescription::ToolDescription(const OpenMS::Internal::ToolDescription&)' is deprecated [-Wdeprecated-copy] 321 | return tools_external_; | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/APPLICATIONS/ToolHandler.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/APPLICATIONS/ToolHandler.cpp:35: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h:138:24: note: because 'OpenMS::Internal::ToolDescription' has user-provided 'OpenMS::Internal::ToolDescription& OpenMS::Internal::ToolDescription::operator=(const OpenMS::Internal::ToolDescription&)' 138 | ToolDescription& operator=(const ToolDescription& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h: In copy constructor 'OpenMS::Internal::ToolDescription::ToolDescription(const OpenMS::Internal::ToolDescription&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h:122:26: warning: implicitly-declared 'OpenMS::Internal::ToolDescriptionInternal::ToolDescriptionInternal(const OpenMS::Internal::ToolDescriptionInternal&)' is deprecated [-Wdeprecated-copy] 122 | struct OPENMS_DLLAPI ToolDescription : | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h:99:32: note: because 'OpenMS::Internal::ToolDescriptionInternal' has user-provided 'OpenMS::Internal::ToolDescriptionInternal& OpenMS::Internal::ToolDescriptionInternal::operator=(const OpenMS::Internal::ToolDescriptionInternal&)' 99 | ToolDescriptionInternal& operator=(const ToolDescriptionInternal& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/APPLICATIONS/ToolHandler.cpp: In static member function 'static OpenMS::Internal::ToolDescription OpenMS::ToolHandler::getExternalTools_()': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/APPLICATIONS/ToolHandler.cpp:321:12: note: synthesized method 'OpenMS::Internal::ToolDescription::ToolDescription(const OpenMS::Internal::ToolDescription&)' first required here 321 | return tools_external_; | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h: In instantiation of 'void std::_Construct(_Tp*, _Args&& ...) [with _Tp = OpenMS::Internal::ToolExternalDetails; _Args = {const OpenMS::Internal::ToolExternalDetails&}]': /usr/include/c++/13/bits/stl_uninitialized.h:120:21: required from '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenMS::Internal::ToolExternalDetails*]' /usr/include/c++/13/bits/stl_uninitialized.h:137:32: required from 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenMS::Internal::ToolExternalDetails*; bool _TrivialValueTypes = false]' /usr/include/c++/13/bits/stl_uninitialized.h:185:15: required from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenMS::Internal::ToolExternalDetails*]' /usr/include/c++/13/bits/stl_uninitialized.h:373:37: required from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = OpenMS::Internal::ToolExternalDetails*; _Tp = OpenMS::Internal::ToolExternalDetails]' /usr/include/c++/13/bits/stl_vector.h:606:31: required from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = OpenMS::Internal::ToolExternalDetails; _Alloc = std::allocator]' /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h:122:26: required from here /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h:106:26: warning: implicitly-declared 'OpenMS::Internal::MappingParam::MappingParam(const OpenMS::Internal::MappingParam&)' is deprecated [-Wdeprecated-copy] 106 | struct OPENMS_DLLAPI ToolExternalDetails | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h:72:35: note: because 'OpenMS::Internal::MappingParam' has user-provided 'OpenMS::Internal::MappingParam& OpenMS::Internal::MappingParam::operator=(const OpenMS::Internal::MappingParam&)' 72 | OPENMS_DLLAPI MappingParam& operator=(const MappingParam& rhs); | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tempbuf.h:61, from /usr/include/c++/13/bits/stl_algo.h:69, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DataValue.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Param.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ToolDescription.h:37: /usr/include/c++/13/bits/stl_construct.h:119:7: note: synthesized method 'OpenMS::Internal::ToolExternalDetails::ToolExternalDetails(const OpenMS::Internal::ToolExternalDetails&)' first required here 119 | ::new((void*)__p) _Tp(std::forward<_Args>(__args)...); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 98%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/APPLICATIONS/TOPPBase.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/APPLICATIONS/TOPPBase.cpp.o -MF CMakeFiles/OpenMS.dir/source/APPLICATIONS/TOPPBase.cpp.o.d -o CMakeFiles/OpenMS.dir/source/APPLICATIONS/TOPPBase.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/APPLICATIONS/TOPPBase.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/RichPeak2D.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/APPLICATIONS/TOPPBase.cpp:53: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:250:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 250 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/APPLICATIONS/TOPPBase.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/APPLICATIONS/TOPPBase.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:276:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:302:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 302 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak2D.h:328:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 328 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/BaseFeature.h:119:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 119 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:39: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/AreaIterator.h:58:19: warning: 'template struct std::iterator' is deprecated [-Wdeprecated-declarations] 58 | public std::iterator | ^~~~~~~~ In file included from /usr/include/c++/13/bits/stl_iterator_base_funcs.h:66, from /usr/include/c++/13/string:47: /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/Precursor.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:191:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 191 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:217:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 217 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Peak1D.h:243:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 243 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:41: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:173:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 173 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:224:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 224 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:276:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 276 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:326:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 326 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:340:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 340 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:354:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 354 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:368:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 368 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:382:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 382 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:396:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 396 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:414:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 414 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:205:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:231:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 231 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ChromatogramPeak.h:257:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 257 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:64:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 64 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:42: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:75:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 75 | struct OPENMS_DLLAPI RTLess : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusMap.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/APPLICATIONS/TOPPBase.cpp:54: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureHandle.h:141:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 141 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:84:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 84 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ConsensusFeature.h:110:12: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/APPLICATIONS/TOPPBase.cpp: In member function 'OpenMS::ParameterInformation OpenMS::TOPPBase::paramEntryToParameterInformation_(const OpenMS::Param::ParamEntry&, const OpenMS::String&, const OpenMS::String&) const': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/APPLICATIONS/TOPPBase.cpp:796:12: warning: implicitly-declared 'OpenMS::ParameterInformation::ParameterInformation(const OpenMS::ParameterInformation&)' is deprecated [-Wdeprecated-copy] 796 | return param; | ^~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/APPLICATIONS/TOPPBase.cpp:38: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/APPLICATIONS/ParameterInformation.h:99:27: note: because 'OpenMS::ParameterInformation' has user-provided 'OpenMS::ParameterInformation& OpenMS::ParameterInformation::operator=(const OpenMS::ParameterInformation&)' 99 | ParameterInformation& operator=(const ParameterInformation& rhs); | ^~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/APPLICATIONS/TOPPBase.cpp: In member function 'bool OpenMS::TOPPBase::writeCTD_()': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/APPLICATIONS/TOPPBase.cpp:2249:73: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 2249 | QStringList lines = ini_file_str.toQString().split("\n", QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QDate:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DateTime.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/DataProcessing.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/APPLICATIONS/TOPPBase.h:44: /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:602:9: note: declared here 602 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/APPLICATIONS/TOPPBase.cpp:2249:73: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 2249 | QStringList lines = ini_file_str.toQString().split("\n", QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:602:9: note: declared here 602 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/APPLICATIONS/TOPPBase.cpp:2249:57: warning: 'QStringList QString::split(const QString&, SplitBehavior, Qt::CaseSensitivity) const' is deprecated: Use split(const QString &sep, Qt::SplitBehavior ...) variant instead [-Wdeprecated-declarations] 2249 | QStringList lines = ini_file_str.toQString().split("\n", QString::SkipEmptyParts); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:606:17: note: declared here 606 | QStringList split(const QString &sep, SplitBehavior behavior, | ^~~~~ [ 98%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/APPLICATIONS/ParameterInformation.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/APPLICATIONS/ParameterInformation.cpp.o -MF CMakeFiles/OpenMS.dir/source/APPLICATIONS/ParameterInformation.cpp.o.d -o CMakeFiles/OpenMS.dir/source/APPLICATIONS/ParameterInformation.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/APPLICATIONS/ParameterInformation.cpp [100%] Building CXX object src/openms/CMakeFiles/OpenMS.dir/source/APPLICATIONS/ConsoleUtils.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_EXPORTS -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/OpenMS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/eol-bspline -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/IsoSpec -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/json -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms/CMakeFiles/OpenMS.dir/source/APPLICATIONS/ConsoleUtils.cpp.o -MF CMakeFiles/OpenMS.dir/source/APPLICATIONS/ConsoleUtils.cpp.o.d -o CMakeFiles/OpenMS.dir/source/APPLICATIONS/ConsoleUtils.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/source/APPLICATIONS/ConsoleUtils.cpp [100%] Linking CXX shared library ../../lib/x86_64-linux-gnu/libOpenMS.so cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMS.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libOpenMS.so.2.6.0 -o ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 CMakeFiles/OpenMS.dir/OpenMS_autogen/mocs_compilation.cpp.o CMakeFiles/OpenMS.dir/source/INTERFACES_IMPL/MockImplementation.cpp.o CMakeFiles/OpenMS.dir/source/CONCEPT/ClassTest.cpp.o CMakeFiles/OpenMS.dir/source/CONCEPT/Constants.cpp.o CMakeFiles/OpenMS.dir/source/CONCEPT/Exception.cpp.o 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CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.cpp.o CMakeFiles/OpenMS.dir/source/ANALYSIS/OPENSWATH/DATAACCESS/SimpleOpenMSSpectraAccessFactory.cpp.o CMakeFiles/OpenMS.dir/source/APPLICATIONS/INIUpdater.cpp.o CMakeFiles/OpenMS.dir/source/APPLICATIONS/ToolHandler.cpp.o CMakeFiles/OpenMS.dir/source/APPLICATIONS/TOPPBase.cpp.o CMakeFiles/OpenMS.dir/source/APPLICATIONS/ParameterInformation.cpp.o CMakeFiles/OpenMS.dir/source/APPLICATIONS/ConsoleUtils.cpp.o ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so 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Consolidate compiler generated dependencies of target OpenSwathAlgo make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/build.make src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 1%] Built target OpenSwathAlgo make -f src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/build.make src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/build.make src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 1%] Built target OpenMS_autogen_timestamp_deps make -f src/openms/CMakeFiles/OpenMS_autogen.dir/build.make src/openms/CMakeFiles/OpenMS_autogen.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS_autogen.dir/DependInfo.cmake "--color=" Dependencies file "src/openms/OpenMS_autogen/deps" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS_autogen.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target OpenMS_autogen make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms/CMakeFiles/OpenMS_autogen.dir/build.make src/openms/CMakeFiles/OpenMS_autogen.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms/CMakeFiles/OpenMS_autogen.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 1%] Built target OpenMS_autogen make -f src/openms/CMakeFiles/OpenMS.dir/build.make src/openms/CMakeFiles/OpenMS.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/DependInfo.cmake "--color=" Dependencies file "src/openms/CMakeFiles/OpenMS.dir/OpenMS_autogen/mocs_compilation.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DECHARGING/FeatureDeconvolution.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DECHARGING/ILPDCWrapper.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DECHARGING/MetaboliteFeatureDeconvolution.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIdentification.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIdentificationBase.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIdentificationCID.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIonScoring.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIonScoringBase.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/CompNovoIonScoringCID.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/DeNovoAlgorithm.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/DeNovoIdentification.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/DeNovoIonScoring.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/DENOVO/DeNovoPostScoring.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/AScore.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/AccurateMassSearchEngine.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/AhoCorasickAmbiguous.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/BasicProteinInferenceAlgorithm.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/BayesianProteinInferenceAlgorithm.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithm.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmAverage.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmBest.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmIdentity.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmPEPIons.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmPEPMatrix.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmRanks.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmSimilarity.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusIDAlgorithmWorst.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ConsensusMapMergerAlgorithm.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/FIAMSDataProcessor.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/FIAMSScheduler.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/FalseDiscoveryRate.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/HiddenMarkovModel.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDBoostGraph.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDConflictResolverAlgorithm.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDDecoyProbability.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDMapper.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDMergerAlgorithm.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDRipper.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDScoreGetterSetter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/IDScoreSwitcherAlgorithm.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/MessagePasserFactory.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/MetaboliteSpectralMatching.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/PeptideIndexing.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/PeptideProteinResolution.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/PercolatorFeatureSetHelper.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/PrecursorPurity.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/ProtonDistributionModel.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/SimpleSearchEngineAlgorithm.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/SiriusAdapterAlgorithm.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/SiriusMSConverter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/BaseGroupFinder.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/BaseSuperimposer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmMedian.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmQuantile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmThreshold.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureDistance.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". 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Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmUnlabeled.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/FeatureMapping.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/MAPMATCHING/LabeledPairFinder.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". 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Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/ControlledVocabulary.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/CsvFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/CsiFingerIdMzTabWriter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataAggregatingConsumer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataCachedConsumer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataChainingConsumer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataSqlConsumer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataStoringConsumer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataTransformingConsumer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/MSDataWritingConsumer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/NoopMSDataConsumer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/SiriusFragmentAnnotation.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/SiriusMzTabWriter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DATAACCESS/SwathFileConsumer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DTA2DFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/DTAFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/EDTAFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/ExperimentalDesignFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/FASTAFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/FeatureXMLFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/FileHandler.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/FileTypes.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/GzipIfstream.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/GzipInputStream.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/AcqusHandler.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/CachedMzMLHandler.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/FidHandler.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/IndexedMzMLDecoder.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/IndexedMzMLHandler.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MascotXMLHandler.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzDataHandler.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzIdentMLDOMHandler.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzIdentMLHandler.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzMLHandler.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzMLHandlerHelper.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzMLSpectrumDecoder.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzMLSqliteHandler.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzMLSqliteSwathHandler.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzQuantMLHandler.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/MzXMLHandler.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/PTMXMLHandler.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/ParamXMLHandler.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/ToolDescriptionHandler.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/TraMLHandler.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/UnimodXMLHandler.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/XMLHandler.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HANDLERS/XQuestResultXMLHandler.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/HDF5Connector.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/IBSpectraFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/IdXMLFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/IndexedMzMLFileLoader.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/InspectInfile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/InspectOutfile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/KroenikFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/LibSVMEncoder.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MRMFeaturePickerFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MRMFeatureQCFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MS2File.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MSNumpressCoder.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MSPFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MSPGenericFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MSstatsFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MascotGenericFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MascotInfile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MascotRemoteQuery.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MascotXMLFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MsInspectFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MzDataFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". 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Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MzTabFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/MzXMLFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/OMSSACSVFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/OMSSAXMLFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". 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Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/ParamXMLFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/PeakTypeEstimator.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/PepNovoInfile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/PepNovoOutfile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/PepXMLFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/PepXMLFileMascot.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/PercolatorOutfile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/FORMAT/ProtXMLFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". 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Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/RTSimulation.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/RawMSSignalSimulation.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/SIMULATION/RawTandemMSSignalSimulation.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". 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Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerMaxima.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakPickerSH.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/PeakShape.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Dependencies file "src/openms/CMakeFiles/OpenMS.dir/source/TRANSFORMATIONS/RAW2PEAK/TwoDOptimization.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target OpenMS make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms/CMakeFiles/OpenMS.dir/build.make src/openms/CMakeFiles/OpenMS.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms/CMakeFiles/OpenMS.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 81%] Built target OpenMS make -f src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 81%] Built target OpenMS_GUI_autogen_timestamp_deps make -f src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 81%] Automatic MOC for target OpenMS_GUI cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/AutogenInfo.json release AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/ANNOTATION/Annotation1DCaret.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/ANNOTATION/Annotation1DItem.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/ANNOTATION/Annotation1DDistanceItem.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/ANNOTATION/Annotation1DPeakItem.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/ANNOTATION/Annotation1DTextItem.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/APPLICATIONS/INIFileEditorWindow.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/ANNOTATION/Annotations1DContainer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/APPLICATIONS/MISC/QApplicationTOPP.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/APPLICATIONS/SwathWizardBase.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/APPLICATIONS/TOPPViewBase.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/APPLICATIONS/TOPPASBase.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/AxisPainter.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/AxisTickCalculator.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/DataFilterDialog.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/AxisWidget.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/ColorSelector.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/FeatureEditDialog.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/HistogramDialog.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/LayerStatisticsDialog.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/PythonModuleRequirement.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/PythonSelector.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/SaveImageDialog.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/Spectrum1DGoToDialog.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/Spectrum1DPrefDialog.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/Spectrum2DGoToDialog.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/Spectrum2DPrefDialog.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/Spectrum3DPrefDialog.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/SpectrumAlignmentDialog.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/SwathTabWidget.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TOPPASIOMappingDialog.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TOPPASInputFileDialog.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TOPPASInputFilesDialog.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TOPPASOutputFilesDialog.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TOPPASToolConfigDialog.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TOPPASVertexNameDialog.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TOPPViewOpenDialog.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TOPPViewPrefDialog.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TheoreticalSpectrumGenerationDialog.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/ToolsDialog.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/EnhancedTabBar.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/EnhancedTabBarWidgetInterface.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/EnhancedWorkspace.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/FilterList.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/GUIProgressLoggerImpl.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/HistogramWidget.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/InputFile.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/InputFileList.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/LayerData.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/ListEditor.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/MISC/ExternalProcessMBox.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/MISC/GUIHelpers.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/MetaDataBrowser.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/MultiGradient.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/MultiGradientSelector.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/OutputDirectory.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/ParamEditor.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/SpectraIdentificationViewWidget.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/SpectraViewWidget.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/Spectrum1DCanvas.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/Spectrum1DWidget.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/Spectrum2DCanvas.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/Spectrum2DWidget.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/Spectrum3DCanvas.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/Spectrum3DOpenGLCanvas.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/Spectrum3DWidget.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/SpectrumCanvas.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/SpectrumWidget.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/SwathLibraryStats.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASEdge.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASInputFileListVertex.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASLogWindow.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASMergerVertex.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASOutputFileListVertex.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASResource.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASResources.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASScene.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASSplitterVertex.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASTabBar.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASToolVertex.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASTreeView.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASVertex.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASWidget.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPViewIdentificationViewBehavior.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPViewSpectraViewBehavior.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/AcquisitionInfoVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/AcquisitionVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/BaseVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/BaseVisualizerGUI.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/ContactPersonVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/DataProcessingVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/DigestionVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/DocumentIdentifierVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/ExperimentalSettingsVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/GradientVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/HPLCVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/InstrumentSettingsVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/InstrumentVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/IonDetectorVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/IonSourceVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/MassAnalyzerVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/MetaInfoDescriptionVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/MetaInfoVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/ModificationVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/PeptideHitVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/PeptideIdentificationVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/PrecursorVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/ProductVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/ProteinHitVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/ProteinIdentificationVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/SampleVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/ScanWindowVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/SoftwareVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/SourceFileVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/SpectrumSettingsVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/TaggingVisualizer.h" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DCaret.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DDistanceItem.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DItem.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DPeakItem.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DTextItem.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/ANNOTATION/Annotations1DContainer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/APPLICATIONS/INIFileEditorWindow.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/APPLICATIONS/MISC/QApplicationTOPP.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/APPLICATIONS/SwathWizardBase.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPASBase.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/AxisPainter.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/AxisTickCalculator.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/AxisWidget.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/ColorSelector.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/DIALOGS/DataFilterDialog.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/DIALOGS/FeatureEditDialog.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/DIALOGS/HistogramDialog.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/DIALOGS/LayerStatisticsDialog.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/DIALOGS/PythonModuleRequirement.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/DIALOGS/PythonSelector.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/DIALOGS/SaveImageDialog.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/DIALOGS/Spectrum1DGoToDialog.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/DIALOGS/Spectrum1DPrefDialog.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/DIALOGS/Spectrum2DGoToDialog.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/DIALOGS/Spectrum2DPrefDialog.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/DIALOGS/Spectrum3DPrefDialog.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/DIALOGS/SpectrumAlignmentDialog.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/DIALOGS/SwathTabWidget.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/DIALOGS/TOPPASIOMappingDialog.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/DIALOGS/TOPPASInputFileDialog.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/DIALOGS/TOPPASInputFilesDialog.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/DIALOGS/TOPPASOutputFilesDialog.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/DIALOGS/TOPPASToolConfigDialog.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/DIALOGS/TOPPASVertexNameDialog.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/DIALOGS/TOPPViewOpenDialog.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/DIALOGS/TOPPViewPrefDialog.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/DIALOGS/TheoreticalSpectrumGenerationDialog.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/DIALOGS/ToolsDialog.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/EnhancedTabBar.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/EnhancedTabBarWidgetInterface.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/EnhancedWorkspace.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/FilterList.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/GUIProgressLoggerImpl.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/HistogramWidget.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/InputFile.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/InputFileList.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/LayerData.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/ListEditor.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/MISC/ExternalProcessMBox.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/MISC/GUIHelpers.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/MetaDataBrowser.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/MultiGradient.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/MultiGradientSelector.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/OutputDirectory.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/ParamEditor.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/SpectraIdentificationViewWidget.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/SpectraViewWidget.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/Spectrum1DCanvas.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/Spectrum1DWidget.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/Spectrum2DCanvas.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/Spectrum2DWidget.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/Spectrum3DCanvas.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/Spectrum3DOpenGLCanvas.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/Spectrum3DWidget.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/SpectrumCanvas.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/SpectrumWidget.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/SwathLibraryStats.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/TOPPASEdge.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/TOPPASInputFileListVertex.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/TOPPASLogWindow.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/TOPPASMergerVertex.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/TOPPASOutputFileListVertex.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/TOPPASResource.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/TOPPASResources.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/TOPPASScene.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/TOPPASSplitterVertex.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/TOPPASTabBar.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/TOPPASToolVertex.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/TOPPASTreeView.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/TOPPASVertex.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/TOPPASWidget.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/TOPPViewIdentificationViewBehavior.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/TOPPViewSpectraViewBehavior.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/AcquisitionInfoVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/AcquisitionVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/BaseVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/BaseVisualizerGUI.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/ContactPersonVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/DataProcessingVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/DigestionVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/DocumentIdentifierVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/ExperimentalSettingsVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/GradientVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/HPLCVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/InstrumentSettingsVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/InstrumentVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/IonDetectorVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/IonSourceVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/MassAnalyzerVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/MetaInfoDescriptionVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/MetaInfoVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/ModificationVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/PeptideHitVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/PeptideIdentificationVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/PrecursorVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/ProductVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/ProteinHitVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/ProteinIdentificationVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/SampleVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/ScanWindowVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/SoftwareVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/SourceFileVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/SpectrumSettingsVisualizer.cpp" AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/VISUALIZER/TaggingVisualizer.cpp" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/LRTCA5NHLR/moc_INIFileEditorWindow.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/APPLICATIONS/INIFileEditorWindow.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/LRTCA5NHLR/moc_INIFileEditorWindow.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/APPLICATIONS/INIFileEditorWindow.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/LRTCA5NHLR/moc_SwathWizardBase.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/APPLICATIONS/SwathWizardBase.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/LRTCA5NHLR/moc_SwathWizardBase.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/APPLICATIONS/SwathWizardBase.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/LRTCA5NHLR/moc_TOPPASBase.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/APPLICATIONS/TOPPASBase.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/LRTCA5NHLR/moc_TOPPASBase.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/APPLICATIONS/TOPPASBase.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QB5Z5ESAYE/moc_QApplicationTOPP.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/APPLICATIONS/MISC/QApplicationTOPP.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QB5Z5ESAYE/moc_QApplicationTOPP.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/APPLICATIONS/MISC/QApplicationTOPP.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_AxisWidget.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/AxisWidget.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_AxisWidget.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/AxisWidget.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_ColorSelector.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/ColorSelector.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_ColorSelector.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/ColorSelector.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/LRTCA5NHLR/moc_TOPPViewBase.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/APPLICATIONS/TOPPViewBase.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/LRTCA5NHLR/moc_TOPPViewBase.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/APPLICATIONS/TOPPViewBase.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_FeatureEditDialog.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/FeatureEditDialog.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_FeatureEditDialog.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/FeatureEditDialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_LayerStatisticsDialog.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/LayerStatisticsDialog.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_LayerStatisticsDialog.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/LayerStatisticsDialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_DataFilterDialog.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/DataFilterDialog.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_DataFilterDialog.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/DataFilterDialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_PythonModuleRequirement.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/PythonModuleRequirement.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_PythonModuleRequirement.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/PythonModuleRequirement.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_HistogramDialog.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/HistogramDialog.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_HistogramDialog.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/HistogramDialog.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QB5Z5ESAYE/moc_QApplicationTOPP.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_PythonSelector.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/PythonSelector.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_PythonSelector.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/PythonSelector.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_PythonSelector.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_SaveImageDialog.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/SaveImageDialog.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_SaveImageDialog.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/SaveImageDialog.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_PythonModuleRequirement.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_Spectrum1DGoToDialog.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/Spectrum1DGoToDialog.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_Spectrum1DGoToDialog.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/Spectrum1DGoToDialog.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_ColorSelector.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_FeatureEditDialog.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_Spectrum1DPrefDialog.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/Spectrum1DPrefDialog.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_Spectrum1DPrefDialog.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/Spectrum1DPrefDialog.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_DataFilterDialog.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_Spectrum2DGoToDialog.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/Spectrum2DGoToDialog.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_Spectrum2DGoToDialog.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/Spectrum2DGoToDialog.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_Spectrum2DPrefDialog.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/Spectrum2DPrefDialog.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_Spectrum2DPrefDialog.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/Spectrum2DPrefDialog.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/LRTCA5NHLR/moc_SwathWizardBase.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_Spectrum3DPrefDialog.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/Spectrum3DPrefDialog.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_Spectrum3DPrefDialog.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/Spectrum3DPrefDialog.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_Spectrum2DGoToDialog.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_SpectrumAlignmentDialog.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/SpectrumAlignmentDialog.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_SpectrumAlignmentDialog.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/SpectrumAlignmentDialog.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_Spectrum1DPrefDialog.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_Spectrum2DPrefDialog.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_SwathTabWidget.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/SwathTabWidget.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_SwathTabWidget.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/SwathTabWidget.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TOPPASIOMappingDialog.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TOPPASIOMappingDialog.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TOPPASIOMappingDialog.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TOPPASIOMappingDialog.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/LRTCA5NHLR/moc_INIFileEditorWindow.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TOPPASInputFileDialog.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TOPPASInputFileDialog.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TOPPASInputFileDialog.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TOPPASInputFileDialog.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_Spectrum1DGoToDialog.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TOPPASInputFilesDialog.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TOPPASInputFilesDialog.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TOPPASInputFilesDialog.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TOPPASInputFilesDialog.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/LRTCA5NHLR/moc_TOPPASBase.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TOPPASOutputFilesDialog.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TOPPASOutputFilesDialog.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TOPPASOutputFilesDialog.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TOPPASOutputFilesDialog.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_SaveImageDialog.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TOPPASToolConfigDialog.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TOPPASToolConfigDialog.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TOPPASToolConfigDialog.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TOPPASToolConfigDialog.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_Spectrum3DPrefDialog.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TOPPASVertexNameDialog.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TOPPASVertexNameDialog.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TOPPASVertexNameDialog.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TOPPASVertexNameDialog.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_SpectrumAlignmentDialog.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TOPPViewOpenDialog.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TOPPViewOpenDialog.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TOPPViewOpenDialog.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TOPPViewOpenDialog.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_SwathTabWidget.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TOPPViewPrefDialog.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TOPPViewPrefDialog.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TOPPViewPrefDialog.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TOPPViewPrefDialog.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TOPPASInputFileDialog.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TheoreticalSpectrumGenerationDialog.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TheoreticalSpectrumGenerationDialog.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TheoreticalSpectrumGenerationDialog.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/TheoreticalSpectrumGenerationDialog.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TOPPASInputFilesDialog.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_ToolsDialog.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/ToolsDialog.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_ToolsDialog.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS/ToolsDialog.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TOPPASOutputFilesDialog.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_EnhancedTabBar.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/EnhancedTabBar.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_EnhancedTabBar.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/EnhancedTabBar.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TOPPASToolConfigDialog.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_EnhancedWorkspace.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/EnhancedWorkspace.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_EnhancedWorkspace.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/EnhancedWorkspace.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TOPPASVertexNameDialog.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_FilterList.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/FilterList.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_FilterList.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/FilterList.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TOPPASIOMappingDialog.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_HistogramWidget.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/HistogramWidget.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_HistogramWidget.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/HistogramWidget.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TOPPViewOpenDialog.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_InputFile.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/InputFile.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_InputFile.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/InputFile.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TOPPViewPrefDialog.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_InputFileList.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/InputFileList.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_InputFileList.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/InputFileList.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_TheoreticalSpectrumGenerationDialog.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_ListEditor.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/ListEditor.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_ListEditor.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/ListEditor.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_LayerStatisticsDialog.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_MetaDataBrowser.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/MetaDataBrowser.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_MetaDataBrowser.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/MetaDataBrowser.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_EnhancedTabBar.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_MultiGradientSelector.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/MultiGradientSelector.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_MultiGradientSelector.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/MultiGradientSelector.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_EnhancedWorkspace.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_OutputDirectory.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/OutputDirectory.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_OutputDirectory.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/OutputDirectory.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_InputFile.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_ParamEditor.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/ParamEditor.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_ParamEditor.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/ParamEditor.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_FilterList.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_SpectraIdentificationViewWidget.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/SpectraIdentificationViewWidget.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_SpectraIdentificationViewWidget.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/SpectraIdentificationViewWidget.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_ListEditor.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_SpectraViewWidget.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/SpectraViewWidget.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_SpectraViewWidget.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/SpectraViewWidget.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_InputFileList.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_Spectrum1DCanvas.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/Spectrum1DCanvas.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_Spectrum1DCanvas.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/Spectrum1DCanvas.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_OutputDirectory.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_Spectrum1DWidget.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/Spectrum1DWidget.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_Spectrum1DWidget.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/Spectrum1DWidget.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_ParamEditor.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_Spectrum2DCanvas.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/Spectrum2DCanvas.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_Spectrum2DCanvas.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/Spectrum2DCanvas.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_ToolsDialog.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_Spectrum2DWidget.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/Spectrum2DWidget.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_Spectrum2DWidget.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/Spectrum2DWidget.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_MetaDataBrowser.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_Spectrum3DCanvas.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/Spectrum3DCanvas.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_Spectrum3DCanvas.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/Spectrum3DCanvas.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_MultiGradientSelector.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_Spectrum3DOpenGLCanvas.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/Spectrum3DOpenGLCanvas.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_Spectrum3DOpenGLCanvas.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/Spectrum3DOpenGLCanvas.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/QHWPTJ6V7O/moc_HistogramDialog.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_Spectrum3DWidget.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/Spectrum3DWidget.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_Spectrum3DWidget.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/Spectrum3DWidget.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_HistogramWidget.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_SpectrumCanvas.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/SpectrumCanvas.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_SpectrumCanvas.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/SpectrumCanvas.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_SpectraIdentificationViewWidget.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_SpectrumWidget.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/SpectrumWidget.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_SpectrumWidget.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/SpectrumWidget.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_AxisWidget.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_SwathLibraryStats.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/SwathLibraryStats.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_SwathLibraryStats.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/SwathLibraryStats.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_Spectrum1DWidget.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASEdge.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASEdge.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASEdge.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPASEdge.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_Spectrum2DCanvas.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_SpectraViewWidget.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_Spectrum1DCanvas.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASInputFileListVertex.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASInputFileListVertex.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASInputFileListVertex.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPASInputFileListVertex.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASLogWindow.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASLogWindow.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASLogWindow.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPASLogWindow.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASMergerVertex.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASMergerVertex.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASMergerVertex.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPASMergerVertex.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_Spectrum3DOpenGLCanvas.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASOutputFileListVertex.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASOutputFileListVertex.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASOutputFileListVertex.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPASOutputFileListVertex.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_Spectrum2DWidget.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASResource.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASResource.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASResource.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPASResource.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/LRTCA5NHLR/moc_TOPPViewBase.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASResources.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASResources.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASResources.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPASResources.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASEdge.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASScene.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASScene.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASScene.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPASScene.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASInputFileListVertex.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASSplitterVertex.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASSplitterVertex.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASSplitterVertex.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPASSplitterVertex.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_Spectrum3DCanvas.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASTabBar.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASTabBar.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASTabBar.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPASTabBar.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASMergerVertex.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASToolVertex.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASToolVertex.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASToolVertex.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPASToolVertex.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASLogWindow.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASTreeView.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASTreeView.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASTreeView.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPASTreeView.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASResource.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASVertex.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASVertex.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASVertex.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPASVertex.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASOutputFileListVertex.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASSplitterVertex.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASWidget.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPASWidget.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASWidget.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPASWidget.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPViewIdentificationViewBehavior.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPViewIdentificationViewBehavior.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPViewIdentificationViewBehavior.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPViewIdentificationViewBehavior.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_SwathLibraryStats.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPViewSpectraViewBehavior.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/TOPPViewSpectraViewBehavior.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPViewSpectraViewBehavior.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPViewSpectraViewBehavior.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASResources.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_AcquisitionInfoVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/AcquisitionInfoVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_AcquisitionInfoVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/AcquisitionInfoVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASScene.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_AcquisitionVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/AcquisitionVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_AcquisitionVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/AcquisitionVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASTabBar.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_BaseVisualizerGUI.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/BaseVisualizerGUI.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_BaseVisualizerGUI.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/BaseVisualizerGUI.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASTreeView.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_ContactPersonVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/ContactPersonVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_ContactPersonVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/ContactPersonVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASToolVertex.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_DataProcessingVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/DataProcessingVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_DataProcessingVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/DataProcessingVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_Spectrum3DWidget.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_DigestionVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/DigestionVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_DigestionVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/DigestionVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASWidget.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_DocumentIdentifierVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/DocumentIdentifierVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_DocumentIdentifierVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/DocumentIdentifierVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_SpectrumCanvas.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_ExperimentalSettingsVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/ExperimentalSettingsVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_ExperimentalSettingsVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/ExperimentalSettingsVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_SpectrumWidget.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_GradientVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/GradientVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_GradientVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/GradientVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPASVertex.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_HPLCVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/HPLCVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_HPLCVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/HPLCVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_AcquisitionInfoVisualizer.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_InstrumentSettingsVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/InstrumentSettingsVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_InstrumentSettingsVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/InstrumentSettingsVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_BaseVisualizerGUI.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_ContactPersonVisualizer.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_InstrumentVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/InstrumentVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_InstrumentVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/InstrumentVisualizer.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_IonDetectorVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/IonDetectorVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_IonDetectorVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/IonDetectorVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_DigestionVisualizer.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_IonSourceVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/IonSourceVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_IonSourceVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/IonSourceVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPViewIdentificationViewBehavior.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_MassAnalyzerVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/MassAnalyzerVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_MassAnalyzerVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/MassAnalyzerVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/OXJREYPCF5/moc_TOPPViewSpectraViewBehavior.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_MetaInfoDescriptionVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/MetaInfoDescriptionVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_MetaInfoDescriptionVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/MetaInfoDescriptionVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_DocumentIdentifierVisualizer.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_MetaInfoVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/MetaInfoVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_MetaInfoVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/MetaInfoVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_DataProcessingVisualizer.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_ModificationVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/ModificationVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_ModificationVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/ModificationVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_HPLCVisualizer.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_AcquisitionVisualizer.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_PeptideHitVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/PeptideHitVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_PeptideHitVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/PeptideHitVisualizer.h AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_PeptideIdentificationVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/PeptideIdentificationVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_PeptideIdentificationVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/PeptideIdentificationVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_GradientVisualizer.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_PrecursorVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/PrecursorVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_PrecursorVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/PrecursorVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_ExperimentalSettingsVisualizer.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_ProductVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/ProductVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_ProductVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/ProductVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_InstrumentSettingsVisualizer.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_ProteinHitVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/ProteinHitVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_ProteinHitVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/ProteinHitVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_IonSourceVisualizer.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_ProteinIdentificationVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/ProteinIdentificationVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_ProteinIdentificationVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/ProteinIdentificationVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_IonDetectorVisualizer.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_SampleVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/SampleVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_SampleVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/SampleVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_InstrumentVisualizer.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_ScanWindowVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/ScanWindowVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_ScanWindowVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/ScanWindowVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_MassAnalyzerVisualizer.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_SoftwareVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/SoftwareVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_SoftwareVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/SoftwareVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_MetaInfoVisualizer.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_SourceFileVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/SourceFileVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_SourceFileVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/SourceFileVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_MetaInfoDescriptionVisualizer.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_SpectrumSettingsVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/SpectrumSettingsVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_SpectrumSettingsVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/SpectrumSettingsVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_PeptideHitVisualizer.cpp.d" AutoMoc: Generating "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_TaggingVisualizer.cpp", because it doesn't exist, from "SRC:/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/TaggingVisualizer.h" /usr/lib/qt5/bin/moc -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -I/usr/lib -I/usr/lib/x86_64-linux-gnu/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -I/build/reproducible-path/openms-2.6.0+cleaned1/debian -I/usr/include/hdf5/serial -I/usr/include/libsvm -I/usr/include/eigen3 -I/usr/include/libwildmagic -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtNetwork -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtSvg -I/usr/include -I/usr/include/c++/13 -I/usr/include/x86_64-linux-gnu/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/x86_64-linux-gnu/13/include -I/usr/local/include -I/usr/include/x86_64-linux-gnu --output-dep-file -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_TaggingVisualizer.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER/TaggingVisualizer.h AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_PrecursorVisualizer.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_ProductVisualizer.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_ModificationVisualizer.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_SampleVisualizer.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_PeptideIdentificationVisualizer.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_ScanWindowVisualizer.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_ProteinHitVisualizer.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_SourceFileVisualizer.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_SpectrumSettingsVisualizer.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_SoftwareVisualizer.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_TaggingVisualizer.cpp.d" AutoMoc: Reading dependencies from "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/2MKSNPN25C/moc_ProteinIdentificationVisualizer.cpp.d" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/cmake -E touch /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/timestamp make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 81%] Built target OpenMS_GUI_autogen make -f src/openms_gui/CMakeFiles/OpenMS_GUI.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 81%] Generating ui_TheoreticalSpectrumGenerationDialog.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_TheoreticalSpectrumGenerationDialog.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/TheoreticalSpectrumGenerationDialog.ui [ 81%] Generating qrc_resources.cpp cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/rcc --name resources --output /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/qrc_resources.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ICONS/resources.qrc [ 81%] Generating ui_DataFilterDialog.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_DataFilterDialog.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/DataFilterDialog.ui [ 81%] Generating ui_FeatureEditDialog.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_FeatureEditDialog.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/FeatureEditDialog.ui [ 81%] Generating ui_FilterList.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_FilterList.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/FilterList.ui [ 83%] Generating ui_InputFile.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_InputFile.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/InputFile.ui [ 83%] Generating ui_InputFileList.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_InputFileList.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/InputFileList.ui [ 83%] Generating ui_LayerStatisticsDialog.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_LayerStatisticsDialog.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/LayerStatisticsDialog.ui [ 83%] Generating ui_OutputDirectory.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_OutputDirectory.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/OutputDirectory.ui [ 83%] Generating ui_ParamEditor.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_ParamEditor.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ParamEditor.ui [ 83%] Generating ui_PythonModuleRequirement.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_PythonModuleRequirement.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/PythonModuleRequirement.ui [ 83%] Generating ui_PythonSelector.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_PythonSelector.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/PythonSelector.ui [ 83%] Generating ui_Spectrum1DGoToDialog.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_Spectrum1DGoToDialog.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/Spectrum1DGoToDialog.ui [ 83%] Generating ui_Spectrum1DPrefDialog.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_Spectrum1DPrefDialog.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/Spectrum1DPrefDialog.ui [ 83%] Generating ui_Spectrum2DGoToDialog.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_Spectrum2DGoToDialog.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/Spectrum2DGoToDialog.ui [ 84%] Generating ui_Spectrum2DPrefDialog.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_Spectrum2DPrefDialog.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/Spectrum2DPrefDialog.ui [ 84%] Generating ui_Spectrum3DPrefDialog.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_Spectrum3DPrefDialog.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/Spectrum3DPrefDialog.ui [ 84%] Generating ui_SpectrumAlignmentDialog.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_SpectrumAlignmentDialog.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/SpectrumAlignmentDialog.ui [ 84%] Generating ui_SwathLibraryStats.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_SwathLibraryStats.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SwathLibraryStats.ui [ 84%] Generating ui_SwathTabWidget.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_SwathTabWidget.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/SwathTabWidget.ui [ 84%] Generating ui_SwathWizardBase.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_SwathWizardBase.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/SwathWizardBase.ui [ 84%] Generating ui_TOPPASIOMappingDialog.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_TOPPASIOMappingDialog.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/TOPPASIOMappingDialog.ui [ 84%] Generating ui_TOPPASInputFileDialog.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_TOPPASInputFileDialog.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/TOPPASInputFileDialog.ui [ 84%] Generating ui_TOPPASInputFilesDialog.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_TOPPASInputFilesDialog.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/TOPPASInputFilesDialog.ui [ 84%] Generating ui_TOPPASOutputFilesDialog.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_TOPPASOutputFilesDialog.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/TOPPASOutputFilesDialog.ui [ 84%] Generating ui_TOPPASVertexNameDialog.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_TOPPASVertexNameDialog.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/TOPPASVertexNameDialog.ui [ 84%] Generating ui_TOPPViewOpenDialog.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_TOPPViewOpenDialog.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/TOPPViewOpenDialog.ui [ 84%] Generating ui_TOPPViewPrefDialog.h cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/lib/qt5/bin/uic -o /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/ui_TOPPViewPrefDialog.h /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/TOPPViewPrefDialog.ui cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/DependInfo.cmake "--color=" Dependencies file "src/openms_gui/OpenMS_GUI_autogen/deps" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target OpenMS_GUI make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/OpenMS_GUI.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/OpenMS_GUI_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/OpenMS_GUI_autogen/mocs_compilation.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/OpenMS_GUI_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/OpenMS_GUI_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/mocs_compilation.cpp [ 84%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/INIFileEditorWindow.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/INIFileEditorWindow.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/INIFileEditorWindow.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/INIFileEditorWindow.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/INIFileEditorWindow.cpp [ 84%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/SwathWizardBase.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/SwathWizardBase.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/SwathWizardBase.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/SwathWizardBase.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/SwathWizardBase.cpp [ 84%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp: In constructor 'OpenMS::TOPPViewBase::TOPPViewBase(QWidget*)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp:148:68: warning: 'const QRect QDesktopWidget::screenGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 148 | QRect screen_geometry = QApplication::desktop()->screenGeometry(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QtWidgets:58, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/SpectraViewWidget.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/APPLICATIONS/TOPPViewBase.h:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp:35: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:79:67: note: declared here 79 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect screenGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp:86: /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/MISC/GUIHelpers.h:51:84: warning: 'void QButtonGroup::buttonClicked(int)' is deprecated: Use QButtonGroup::idClicked(int) instead [-Wdeprecated-declarations] 51 | #define CONNECTCAST(class,func,args) static_cast(&class::func) | ^ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp:322:38: note: in expansion of macro 'CONNECTCAST' 322 | connect(intensity_button_group_, CONNECTCAST(QButtonGroup,buttonClicked,(int)), this, &TOPPViewBase::setIntensityMode); | ^~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QtWidgets:27: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qbuttongroup.h:90:10: note: declared here 90 | void buttonClicked(int); | ^~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/MISC/GUIHelpers.h:51:84: warning: 'void QButtonGroup::buttonClicked(int)' is deprecated: Use QButtonGroup::idClicked(int) instead [-Wdeprecated-declarations] 51 | #define CONNECTCAST(class,func,args) static_cast(&class::func) | ^ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp:322:38: note: in expansion of macro 'CONNECTCAST' 322 | connect(intensity_button_group_, CONNECTCAST(QButtonGroup,buttonClicked,(int)), this, &TOPPViewBase::setIntensityMode); | ^~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qbuttongroup.h:90:10: note: declared here 90 | void buttonClicked(int); | ^~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/MISC/GUIHelpers.h:51:84: warning: 'void QButtonGroup::buttonClicked(int)' is deprecated: Use QButtonGroup::idClicked(int) instead [-Wdeprecated-declarations] 51 | #define CONNECTCAST(class,func,args) static_cast(&class::func) | ^ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp:357:29: note: in expansion of macro 'CONNECTCAST' 357 | connect(draw_group_1d_, CONNECTCAST(QButtonGroup, buttonClicked, (int)), this, &TOPPViewBase::setDrawMode1D); | ^~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qbuttongroup.h:90:10: note: declared here 90 | void buttonClicked(int); | ^~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/MISC/GUIHelpers.h:51:84: warning: 'void QButtonGroup::buttonClicked(int)' is deprecated: Use QButtonGroup::idClicked(int) instead [-Wdeprecated-declarations] 51 | #define CONNECTCAST(class,func,args) static_cast(&class::func) | ^ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp:357:29: note: in expansion of macro 'CONNECTCAST' 357 | connect(draw_group_1d_, CONNECTCAST(QButtonGroup, buttonClicked, (int)), this, &TOPPViewBase::setDrawMode1D); | ^~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qbuttongroup.h:90:10: note: declared here 90 | void buttonClicked(int); | ^~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp: In member function 'void OpenMS::TOPPViewBase::runTOPPTool_()': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp:2457:24: warning: 'int QTime::restart()' is deprecated: Use QElapsedTimer instead [-Wdeprecated-declarations] 2457 | topp_.timer.restart(); | ~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/QDate:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DateTime.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/DataProcessing.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/SpectrumSettings.h:44, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSSpectrum.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/DATAREDUCTION/DataFilters.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/FilterList.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/APPLICATIONS/TOPPViewBase.h:46: /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:236:54: note: declared here 236 | QT_DEPRECATED_X("Use QElapsedTimer instead") int restart(); | ^~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp: In member function 'void OpenMS::TOPPViewBase::finishTOPPToolExecution(int, QProcess::ExitStatus)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp:2493:79: warning: 'int QTime::elapsed() const' is deprecated: Use QElapsedTimer instead [-Wdeprecated-declarations] 2493 | QString("Execution time: %1 ms").arg(topp_.timer.elapsed())); | ~~~~~~~~~~~~~~~~~~~^~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:237:54: note: declared here 237 | QT_DEPRECATED_X("Use QElapsedTimer instead") int elapsed() const; | ^~~~~~~ [ 84%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/TOPPASBase.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/TOPPASBase.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/TOPPASBase.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/TOPPASBase.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPASBase.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPASBase.cpp: In static member function 'static OpenMS::TOPPASTreeView* OpenMS::TOPPASBase::createTOPPToolsTreeWidget(QWidget*)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPASBase.cpp:482:52: warning: 'QList QSet::toList() const [with T = QString]' is deprecated: Use values() instead. [-Wdeprecated-declarations] 482 | QStringList category_list = category_set.toList(); | ~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qitemselectionmodel.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qabstractitemview.h:46, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtreeview.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtreewidget.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QTreeWidget:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPASTreeView.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/APPLICATIONS/TOPPASBase.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPASBase.cpp:40: /usr/include/x86_64-linux-gnu/qt5/QtCore/qset.h:265:14: note: declared here 265 | QList toList() const { return values(); } | ^~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPASBase.cpp:483:10: warning: 'void qSort(Container&) [with Container = QStringList]' is deprecated: Use std::sort [-Wdeprecated-declarations] 483 | qSort(category_list); | ~~~~~^~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qlist.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qobject.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qwidget.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qframe.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qabstractscrollarea.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qabstractitemview.h:44: /usr/include/x86_64-linux-gnu/qt5/QtCore/qalgorithms.h:188:46: note: declared here 188 | QT_DEPRECATED_X("Use std::sort") inline void qSort(Container &c) | ^~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPASBase.cpp: In member function 'void OpenMS::TOPPASBase::openFilesInTOPPView(QStringList)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPASBase.cpp:1559:94: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 1559 | files = files.join("#SpLiT_sTrInG#+#SpLiT_sTrInG#").split("#SpLiT_sTrInG#", QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qobject.h:47: /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:602:9: note: declared here 602 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPASBase.cpp:1559:94: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 1559 | files = files.join("#SpLiT_sTrInG#+#SpLiT_sTrInG#").split("#SpLiT_sTrInG#", QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:602:9: note: declared here 602 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPASBase.cpp:1559:66: warning: 'QStringList QString::split(const QString&, SplitBehavior, Qt::CaseSensitivity) const' is deprecated: Use split(const QString &sep, Qt::SplitBehavior ...) variant instead [-Wdeprecated-declarations] 1559 | files = files.join("#SpLiT_sTrInG#+#SpLiT_sTrInG#").split("#SpLiT_sTrInG#", QString::SkipEmptyParts); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:606:17: note: declared here 606 | QStringList split(const QString &sep, SplitBehavior behavior, | ^~~~~ [ 84%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/MISC/QApplicationTOPP.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/MISC/QApplicationTOPP.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/MISC/QApplicationTOPP.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/MISC/QApplicationTOPP.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/MISC/QApplicationTOPP.cpp [ 84%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/DataFilterDialog.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB 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src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/HistogramDialog.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/HistogramDialog.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/HistogramDialog.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/HistogramDialog.cpp [ 86%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/LayerStatisticsDialog.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include 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86%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/SaveImageDialog.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/SaveImageDialog.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/SaveImageDialog.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/SaveImageDialog.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/SaveImageDialog.cpp [ 86%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/Spectrum1DGoToDialog.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && 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src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/Spectrum2DPrefDialog.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/Spectrum2DPrefDialog.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/Spectrum2DPrefDialog.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/Spectrum2DPrefDialog.cpp [ 86%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/Spectrum3DPrefDialog.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include 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87%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPASIOMappingDialog.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem 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/usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPASIOMappingDialog.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPASIOMappingDialog.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPASIOMappingDialog.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/TOPPASIOMappingDialog.cpp [ 87%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPASInputFileDialog.cpp.o cd 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src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPASToolConfigDialog.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPASToolConfigDialog.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPASToolConfigDialog.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/TOPPASToolConfigDialog.cpp [ 87%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPASVertexNameDialog.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include 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CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPViewOpenDialog.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/TOPPViewOpenDialog.cpp [ 87%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPViewPrefDialog.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem 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/usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/ToolsDialog.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/ToolsDialog.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/ToolsDialog.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/DIALOGS/ToolsDialog.cpp [ 87%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MISC/ExternalProcessMBox.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem 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/usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MISC/ExternalProcessMBox.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MISC/ExternalProcessMBox.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MISC/ExternalProcessMBox.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/MISC/ExternalProcessMBox.cpp [ 87%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MISC/GUIHelpers.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ 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/usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MISC/GUIHelpers.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MISC/GUIHelpers.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MISC/GUIHelpers.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/MISC/GUIHelpers.cpp [ 87%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/AcquisitionInfoVisualizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem 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-I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem 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src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/AcquisitionVisualizer.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/AcquisitionVisualizer.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/AcquisitionVisualizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/VISUALIZER/AcquisitionVisualizer.cpp [ 89%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/BaseVisualizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem 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CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/BaseVisualizerGUI.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/VISUALIZER/BaseVisualizerGUI.cpp [ 89%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ContactPersonVisualizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem 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/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ContactPersonVisualizer.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ContactPersonVisualizer.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ContactPersonVisualizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/VISUALIZER/ContactPersonVisualizer.cpp [ 89%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/DataProcessingVisualizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem 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Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/DigestionVisualizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include 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/usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/DigestionVisualizer.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/DigestionVisualizer.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/DigestionVisualizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/VISUALIZER/DigestionVisualizer.cpp [ 89%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/DocumentIdentifierVisualizer.cpp.o cd 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/DocumentIdentifierVisualizer.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/DocumentIdentifierVisualizer.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/DocumentIdentifierVisualizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/VISUALIZER/DocumentIdentifierVisualizer.cpp [ 89%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ExperimentalSettingsVisualizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB 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-fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/GradientVisualizer.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/GradientVisualizer.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/GradientVisualizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/VISUALIZER/GradientVisualizer.cpp [ 89%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/HPLCVisualizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui 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src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/InstrumentSettingsVisualizer.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/InstrumentSettingsVisualizer.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/InstrumentSettingsVisualizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/VISUALIZER/InstrumentSettingsVisualizer.cpp [ 89%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/InstrumentVisualizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem 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src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/InstrumentVisualizer.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/InstrumentVisualizer.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/InstrumentVisualizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/VISUALIZER/InstrumentVisualizer.cpp [ 89%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/IonDetectorVisualizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem 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CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/IonDetectorVisualizer.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/IonDetectorVisualizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/VISUALIZER/IonDetectorVisualizer.cpp [ 90%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/IonSourceVisualizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include 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-isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/IonSourceVisualizer.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/IonSourceVisualizer.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/IonSourceVisualizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/VISUALIZER/IonSourceVisualizer.cpp [ 90%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/MassAnalyzerVisualizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem 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src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ModificationVisualizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem 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/usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ModificationVisualizer.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ModificationVisualizer.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ModificationVisualizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/VISUALIZER/ModificationVisualizer.cpp [ 90%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/PeptideHitVisualizer.cpp.o cd 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/PeptideHitVisualizer.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/PeptideHitVisualizer.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/PeptideHitVisualizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/VISUALIZER/PeptideHitVisualizer.cpp [ 90%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/PeptideIdentificationVisualizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB 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/usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/PeptideIdentificationVisualizer.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/PeptideIdentificationVisualizer.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/PeptideIdentificationVisualizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/VISUALIZER/PeptideIdentificationVisualizer.cpp [ 90%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/PrecursorVisualizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/PrecursorVisualizer.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/PrecursorVisualizer.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/PrecursorVisualizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/VISUALIZER/PrecursorVisualizer.cpp [ 90%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ProteinHitVisualizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem 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-Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ProteinHitVisualizer.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ProteinHitVisualizer.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ProteinHitVisualizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/VISUALIZER/ProteinHitVisualizer.cpp [ 90%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ProteinIdentificationVisualizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem 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src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ProteinIdentificationVisualizer.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ProteinIdentificationVisualizer.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ProteinIdentificationVisualizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/VISUALIZER/ProteinIdentificationVisualizer.cpp [ 90%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/SampleVisualizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem 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src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/SampleVisualizer.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/SampleVisualizer.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/SampleVisualizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/VISUALIZER/SampleVisualizer.cpp [ 90%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ScanWindowVisualizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem 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CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ScanWindowVisualizer.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ScanWindowVisualizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/VISUALIZER/ScanWindowVisualizer.cpp [ 90%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/SoftwareVisualizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src 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CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/SoftwareVisualizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/VISUALIZER/SoftwareVisualizer.cpp [ 90%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/SourceFileVisualizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem 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/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/SourceFileVisualizer.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/SourceFileVisualizer.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/SourceFileVisualizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/VISUALIZER/SourceFileVisualizer.cpp [ 92%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/SpectrumSettingsVisualizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem 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[ 92%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/TaggingVisualizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/TaggingVisualizer.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/TaggingVisualizer.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/TaggingVisualizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/VISUALIZER/TaggingVisualizer.cpp [ 92%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ProductVisualizer.cpp.o cd 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ProductVisualizer.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ProductVisualizer.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ProductVisualizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/VISUALIZER/ProductVisualizer.cpp [ 92%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DDistanceItem.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB 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-I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem 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-Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DItem.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DItem.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DItem.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DItem.cpp [ 92%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DPeakItem.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DPeakItem.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DPeakItem.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DPeakItem.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DPeakItem.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DPeakItem.cpp: In member function 'virtual void OpenMS::Annotation1DPeakItem::draw(OpenMS::Spectrum1DCanvas*, QPainter&, bool)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DPeakItem.cpp:161:29: warning: 'QLineF::IntersectType QLineF::intersect(const QLineF&, QPointF*) const' is deprecated: Use intersects() instead [-Wdeprecated-declarations] 161 | itype = line.intersect(top, ip); | ~~~~~~~~~~~~~~^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/qmatrix.h:47, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qbrush.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qpen.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtGui/QPen:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/ANNOTATION/Annotations1DContainer.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/LayerData.h:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/SpectrumCanvas.h:44, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/Spectrum1DCanvas.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DPeakItem.cpp:36: /usr/include/x86_64-linux-gnu/qt5/QtCore/qline.h:256:19: note: declared here 256 | IntersectType intersect(const QLineF &l, QPointF *intersectionPoint) const; | ^~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DPeakItem.cpp:169:29: warning: 'QLineF::IntersectType QLineF::intersect(const QLineF&, QPointF*) const' is deprecated: Use intersects() instead [-Wdeprecated-declarations] 169 | itype = line.intersect(left, ip); | ~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qline.h:256:19: note: declared here 256 | IntersectType intersect(const QLineF &l, QPointF *intersectionPoint) const; | ^~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DPeakItem.cpp:178:29: warning: 'QLineF::IntersectType QLineF::intersect(const QLineF&, QPointF*) const' is deprecated: Use intersects() instead [-Wdeprecated-declarations] 178 | itype = line.intersect(right, ip); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qline.h:256:19: note: declared here 256 | IntersectType intersect(const QLineF &l, QPointF *intersectionPoint) const; | ^~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DPeakItem.cpp:187:29: warning: 'QLineF::IntersectType QLineF::intersect(const QLineF&, QPointF*) const' is deprecated: Use intersects() instead [-Wdeprecated-declarations] 187 | itype = line.intersect(bottom, ip); | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qline.h:256:19: note: declared here 256 | IntersectType intersect(const QLineF &l, QPointF *intersectionPoint) const; | ^~~~~~~~~ [ 92%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DCaret.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DCaret.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DCaret.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DCaret.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DCaret.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DCaret.cpp: In member function 'virtual void OpenMS::Annotation1DCaret::draw(OpenMS::Spectrum1DCanvas*, QPainter&, bool)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DCaret.cpp:161:29: warning: 'QLineF::IntersectType QLineF::intersect(const QLineF&, QPointF*) const' is deprecated: Use intersects() instead [-Wdeprecated-declarations] 161 | itype = line.intersect(top, ip); | ~~~~~~~~~~~~~~^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/qmatrix.h:47, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtransform.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qstatictext.h:48, from /usr/include/x86_64-linux-gnu/qt5/QtGui/QStaticText:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/ANNOTATION/Annotation1DCaret.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DCaret.cpp:35: /usr/include/x86_64-linux-gnu/qt5/QtCore/qline.h:256:19: note: declared here 256 | IntersectType intersect(const QLineF &l, QPointF *intersectionPoint) const; | ^~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DCaret.cpp:169:29: warning: 'QLineF::IntersectType QLineF::intersect(const QLineF&, QPointF*) const' is deprecated: Use intersects() instead [-Wdeprecated-declarations] 169 | itype = line.intersect(left, ip); | ~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qline.h:256:19: note: declared here 256 | IntersectType intersect(const QLineF &l, QPointF *intersectionPoint) const; | ^~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DCaret.cpp:178:29: warning: 'QLineF::IntersectType QLineF::intersect(const QLineF&, QPointF*) const' is deprecated: Use intersects() instead [-Wdeprecated-declarations] 178 | itype = line.intersect(right, ip); | ~~~~~~~~~~~~~~^~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qline.h:256:19: note: declared here 256 | IntersectType intersect(const QLineF &l, QPointF *intersectionPoint) const; | ^~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DCaret.cpp:187:29: warning: 'QLineF::IntersectType QLineF::intersect(const QLineF&, QPointF*) const' is deprecated: Use intersects() instead [-Wdeprecated-declarations] 187 | itype = line.intersect(bottom, ip); | ~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qline.h:256:19: note: declared here 256 | IntersectType intersect(const QLineF &l, QPointF *intersectionPoint) const; | ^~~~~~~~~ [ 92%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DTextItem.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DTextItem.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DTextItem.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DTextItem.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ANNOTATION/Annotation1DTextItem.cpp [ 92%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotations1DContainer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem 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/usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotations1DContainer.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotations1DContainer.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotations1DContainer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ANNOTATION/Annotations1DContainer.cpp [ 92%] Building 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src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/AxisWidget.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/AxisWidget.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/AxisWidget.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/AxisWidget.cpp [ 92%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ColorSelector.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/EnhancedWorkspace.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/EnhancedWorkspace.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/EnhancedWorkspace.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/EnhancedWorkspace.cpp [ 93%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/FilterList.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB 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-I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem 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src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/GUIProgressLoggerImpl.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/GUIProgressLoggerImpl.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/GUIProgressLoggerImpl.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/GUIProgressLoggerImpl.cpp [ 93%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/HistogramWidget.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include 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/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/HistogramWidget.cpp [ 93%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/InputFile.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem 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'OpenMS::InputFile::InputFile(QWidget*)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/InputFile.cpp:57:48: warning: 'QDirModel::QDirModel(QObject*)' is deprecated: Use QFileSystemModel [-Wdeprecated-declarations] 57 | completer->setModel(new QDirModel(completer)); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDirModel:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/InputFile.cpp:44: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here 73 | QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr); | ^~~~~~~~~ [ 93%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/InputFileList.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem 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-fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/InputFileList.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/InputFileList.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/InputFileList.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/InputFileList.cpp [ 93%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/LayerData.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/LayerData.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/LayerData.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/LayerData.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/LayerData.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/LayerData.cpp: In member function 'void OpenMS::LayerData::updatePeptideHitAnnotations_(OpenMS::PeptideHit&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/LayerData.cpp:195:71: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 195 | QStringList lines = peak_anno.split(QRegExp("[\r\n]"), QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QDate:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DateTime.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/DataProcessing.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:43, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/LayerData.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/LayerData.cpp:35: /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:602:9: note: declared here 602 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/LayerData.cpp:195:71: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 195 | QStringList lines = peak_anno.split(QRegExp("[\r\n]"), QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:602:9: note: declared here 602 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/LayerData.cpp:195:42: warning: 'QStringList QString::split(const QRegExp&, SplitBehavior) const' is deprecated: Use split(const QRegularExpression &, Qt::SplitBehavior) variant instead [-Wdeprecated-declarations] 195 | QStringList lines = peak_anno.split(QRegExp("[\r\n]"), QString::SkipEmptyParts); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:619:17: note: declared here 619 | QStringList split(const QRegExp &sep, SplitBehavior behavior) const; | ^~~~~ [ 93%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ListEditor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ListEditor.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ListEditor.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ListEditor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ListEditor.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ListEditor.cpp: In member function 'void OpenMS::Internal::ListTable::createNewRow()': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ListEditor.cpp:332:22: warning: 'void QListWidget::setItemSelected(const QListWidgetItem*, bool)' is deprecated: Use QListWidgetItem::setSelected() instead [-Wdeprecated-declarations] 332 | setItemSelected(item, true); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QListWidget:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/ListEditor.h:45, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ListEditor.cpp:35: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qlistwidget.h:263:10: note: declared here 263 | void setItemSelected(const QListWidgetItem *item, bool select); | ^~~~~~~~~~~~~~~ [ 93%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MetaDataBrowser.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem 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-fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MetaDataBrowser.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MetaDataBrowser.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MetaDataBrowser.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/MetaDataBrowser.cpp [ 93%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MultiGradient.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MultiGradient.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MultiGradient.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MultiGradient.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/MultiGradient.cpp [ 93%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MultiGradientSelector.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MultiGradientSelector.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MultiGradientSelector.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MultiGradientSelector.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/MultiGradientSelector.cpp [ 95%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/OutputDirectory.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/OutputDirectory.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/OutputDirectory.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/OutputDirectory.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/OutputDirectory.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/OutputDirectory.cpp: In constructor 'OpenMS::OutputDirectory::OutputDirectory(QWidget*)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/OutputDirectory.cpp:56:51: warning: 'QDirModel::QDirModel(QObject*)' is deprecated: Use QFileSystemModel [-Wdeprecated-declarations] 56 | QDirModel* dir_model = new QDirModel(completer); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QDirModel:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/OutputDirectory.cpp:45: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here 73 | QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr); | ^~~~~~~~~ [ 95%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ParamEditor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ParamEditor.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ParamEditor.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ParamEditor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ParamEditor.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ParamEditor.cpp: In member function 'bool OpenMS::Internal::ParamEditorDelegate::exists_(QString, QModelIndex) const': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ParamEditor.cpp:369:34: warning: 'QModelIndex QModelIndex::child(int, int) const' is deprecated: Use QAbstractItemModel::index [-Wdeprecated-declarations] 369 | while (index.parent().child(current_index, 0).isValid()) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qstyleoption.h:66, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qabstractitemdelegate.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qitemdelegate.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QItemDelegate:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/ParamEditor.h:43, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ParamEditor.cpp:35: /usr/include/x86_64-linux-gnu/qt5/QtCore/qabstractitemmodel.h:455:20: note: declared here 455 | inline QModelIndex QModelIndex::child(int arow, int acolumn) const | ^~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ParamEditor.cpp:374:31: warning: 'QModelIndex QModelIndex::child(int, int) const' is deprecated: Use QAbstractItemModel::index [-Wdeprecated-declarations] 374 | index.parent().child(current_index, 0).data(Qt::DisplayRole).toString() == name | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qabstractitemmodel.h:455:20: note: declared here 455 | inline QModelIndex QModelIndex::child(int arow, int acolumn) const | ^~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ParamEditor.cpp:377:75: warning: 'QModelIndex QModelIndex::child(int, int) const' is deprecated: Use QAbstractItemModel::index [-Wdeprecated-declarations] 377 | (index.data(Qt::UserRole).toInt() == 0 && index.parent().child(current_index, 0).data(Qt::UserRole).toInt() == 0) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qabstractitemmodel.h:455:20: note: declared here 455 | inline QModelIndex QModelIndex::child(int arow, int acolumn) const | ^~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ParamEditor.cpp:379:75: warning: 'QModelIndex QModelIndex::child(int, int) const' is deprecated: Use QAbstractItemModel::index [-Wdeprecated-declarations] 379 | (index.data(Qt::UserRole).toInt() != 0 && index.parent().child(current_index, 0).data(Qt::UserRole).toInt() != 0) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qabstractitemmodel.h:455:20: note: declared here 455 | inline QModelIndex QModelIndex::child(int arow, int acolumn) const | ^~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ParamEditor.cpp: In member function 'void OpenMS::ParamEditor::load(OpenMS::Param&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ParamEditor.cpp:503:29: warning: 'void QTreeWidgetItem::setTextColor(int, const QColor&)' is deprecated: Use QTreeWidgetItem::setForeground() instead [-Wdeprecated-declarations] 503 | item->setTextColor(0, Qt::darkGray); // color of nodes with children | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QTreeWidget:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/ParamEditor.h:44: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtreewidget.h:156:17: note: declared here 156 | inline void setTextColor(int column, const QColor &color) | ^~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ParamEditor.cpp:535:27: warning: 'void QTreeWidgetItem::setTextColor(int, const QColor&)' is deprecated: Use QTreeWidgetItem::setForeground() instead [-Wdeprecated-declarations] 535 | item->setTextColor(0, QColor(255, 140, 0, 255)); // orange | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtreewidget.h:156:17: note: declared here 156 | inline void setTextColor(int column, const QColor &color) | ^~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ParamEditor.cpp:536:27: warning: 'void QTreeWidgetItem::setTextColor(int, const QColor&)' is deprecated: Use QTreeWidgetItem::setForeground() instead [-Wdeprecated-declarations] 536 | item->setTextColor(2, QColor(255, 140, 0, 255)); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtreewidget.h:156:17: note: declared here 156 | inline void setTextColor(int column, const QColor &color) | ^~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ParamEditor.cpp:537:27: warning: 'void QTreeWidgetItem::setTextColor(int, const QColor&)' is deprecated: Use QTreeWidgetItem::setForeground() instead [-Wdeprecated-declarations] 537 | item->setTextColor(3, QColor(255, 140, 0, 255)); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtreewidget.h:156:17: note: declared here 156 | inline void setTextColor(int column, const QColor &color) | ^~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ParamEditor.cpp:541:27: warning: 'void QTreeWidgetItem::setTextColor(int, const QColor&)' is deprecated: Use QTreeWidgetItem::setForeground() instead [-Wdeprecated-declarations] 541 | item->setTextColor(0, Qt::darkGray); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtreewidget.h:156:17: note: declared here 156 | inline void setTextColor(int column, const QColor &color) | ^~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ParamEditor.cpp:542:27: warning: 'void QTreeWidgetItem::setTextColor(int, const QColor&)' is deprecated: Use QTreeWidgetItem::setForeground() instead [-Wdeprecated-declarations] 542 | item->setTextColor(2, Qt::darkGray); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtreewidget.h:156:17: note: declared here 156 | inline void setTextColor(int column, const QColor &color) | ^~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/ParamEditor.cpp:543:27: warning: 'void QTreeWidgetItem::setTextColor(int, const QColor&)' is deprecated: Use QTreeWidgetItem::setForeground() instead [-Wdeprecated-declarations] 543 | item->setTextColor(3, Qt::darkGray); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtreewidget.h:156:17: note: declared here 156 | inline void setTextColor(int column, const QColor &color) | ^~~~~~~~~~~~ [ 95%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SpectraIdentificationViewWidget.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SpectraIdentificationViewWidget.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SpectraIdentificationViewWidget.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SpectraIdentificationViewWidget.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraIdentificationViewWidget.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraIdentificationViewWidget.cpp: In member function 'void OpenMS::SpectraIdentificationViewWidget::updateEntries()': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraIdentificationViewWidget.cpp:543:35: warning: 'void QTableWidgetItem::setBackgroundColor(const QColor&)' is deprecated: Use QTableWidgetItem::setBackground() instead [-Wdeprecated-declarations] 543 | item->setBackgroundColor(c); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QtWidgets:272, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/SpectraIdentificationViewWidget.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraIdentificationViewWidget.cpp:35: /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtablewidget.h:142:17: note: declared here 142 | inline void setBackgroundColor(const QColor &color) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraIdentificationViewWidget.cpp:544:29: warning: 'void QTableWidgetItem::setTextColor(const QColor&)' is deprecated: Use QTableWidgetItem::setForeground() instead [-Wdeprecated-declarations] 544 | item->setTextColor(Qt::blue); // draw precursor information in blue | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtablewidget.h:156:17: note: declared here 156 | inline void setTextColor(const QColor &color) | ^~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraIdentificationViewWidget.cpp:565:35: warning: 'void QTableWidgetItem::setBackgroundColor(const QColor&)' is deprecated: Use QTableWidgetItem::setBackground() instead [-Wdeprecated-declarations] 565 | item->setBackgroundColor(c); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtablewidget.h:142:17: note: declared here 142 | inline void setBackgroundColor(const QColor &color) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraIdentificationViewWidget.cpp:571:35: warning: 'void QTableWidgetItem::setBackgroundColor(const QColor&)' is deprecated: Use QTableWidgetItem::setBackground() instead [-Wdeprecated-declarations] 571 | item->setBackgroundColor(c); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtablewidget.h:142:17: note: declared here 142 | inline void setBackgroundColor(const QColor &color) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraIdentificationViewWidget.cpp:670:39: warning: 'void QTableWidgetItem::setBackgroundColor(const QColor&)' is deprecated: Use QTableWidgetItem::setBackground() instead [-Wdeprecated-declarations] 670 | item->setBackgroundColor(c); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtablewidget.h:142:17: note: declared here 142 | inline void setBackgroundColor(const QColor &color) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraIdentificationViewWidget.cpp:671:33: warning: 'void QTableWidgetItem::setTextColor(const QColor&)' is deprecated: Use QTableWidgetItem::setForeground() instead [-Wdeprecated-declarations] 671 | item->setTextColor(Qt::blue); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtablewidget.h:156:17: note: declared here 156 | inline void setTextColor(const QColor &color) | ^~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraIdentificationViewWidget.cpp:701:39: warning: 'void QTableWidgetItem::setBackgroundColor(const QColor&)' is deprecated: Use QTableWidgetItem::setBackground() instead [-Wdeprecated-declarations] 701 | item->setBackgroundColor(c); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtablewidget.h:142:17: note: declared here 142 | inline void setBackgroundColor(const QColor &color) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraIdentificationViewWidget.cpp:702:33: warning: 'void QTableWidgetItem::setTextColor(const QColor&)' is deprecated: Use QTableWidgetItem::setForeground() instead [-Wdeprecated-declarations] 702 | item->setTextColor(Qt::blue); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtablewidget.h:156:17: note: declared here 156 | inline void setTextColor(const QColor &color) | ^~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraIdentificationViewWidget.cpp:722:39: warning: 'void QTableWidgetItem::setBackgroundColor(const QColor&)' is deprecated: Use QTableWidgetItem::setBackground() instead [-Wdeprecated-declarations] 722 | item->setBackgroundColor(c); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtablewidget.h:142:17: note: declared here 142 | inline void setBackgroundColor(const QColor &color) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraIdentificationViewWidget.cpp:728:39: warning: 'void QTableWidgetItem::setBackgroundColor(const QColor&)' is deprecated: Use QTableWidgetItem::setBackground() instead [-Wdeprecated-declarations] 728 | item->setBackgroundColor(c); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtablewidget.h:142:17: note: declared here 142 | inline void setBackgroundColor(const QColor &color) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraIdentificationViewWidget.cpp:755:41: warning: 'void QTableWidgetItem::setBackgroundColor(const QColor&)' is deprecated: Use QTableWidgetItem::setBackground() instead [-Wdeprecated-declarations] 755 | item->setBackgroundColor(c); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtablewidget.h:142:17: note: declared here 142 | inline void setBackgroundColor(const QColor &color) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraIdentificationViewWidget.cpp: In member function 'void OpenMS::SpectraIdentificationViewWidget::addTextItemToBottomRow_(const QString&, OpenMS::Size, const QColor&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraIdentificationViewWidget.cpp:974:29: warning: 'void QTableWidgetItem::setBackgroundColor(const QColor&)' is deprecated: Use QTableWidgetItem::setBackground() instead [-Wdeprecated-declarations] 974 | item->setBackgroundColor(c); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtablewidget.h:142:17: note: declared here 142 | inline void setBackgroundColor(const QColor &color) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraIdentificationViewWidget.cpp: In member function 'void OpenMS::SpectraIdentificationViewWidget::addIntItemToBottomRow_(OpenMS::Int, OpenMS::Size, const QColor&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraIdentificationViewWidget.cpp:982:29: warning: 'void QTableWidgetItem::setBackgroundColor(const QColor&)' is deprecated: Use QTableWidgetItem::setBackground() instead [-Wdeprecated-declarations] 982 | item->setBackgroundColor(c); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtablewidget.h:142:17: note: declared here 142 | inline void setBackgroundColor(const QColor &color) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraIdentificationViewWidget.cpp: In member function 'void OpenMS::SpectraIdentificationViewWidget::addDoubleItemToBottomRow_(double, OpenMS::Size, const QColor&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraIdentificationViewWidget.cpp:990:29: warning: 'void QTableWidgetItem::setBackgroundColor(const QColor&)' is deprecated: Use QTableWidgetItem::setBackground() instead [-Wdeprecated-declarations] 990 | item->setBackgroundColor(c); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtablewidget.h:142:17: note: declared here 142 | inline void setBackgroundColor(const QColor &color) | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraIdentificationViewWidget.cpp: In member function 'void OpenMS::SpectraIdentificationViewWidget::addCheckboxItemToBottomRow_(bool, OpenMS::Size, const QColor&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraIdentificationViewWidget.cpp:1005:29: warning: 'void QTableWidgetItem::setBackgroundColor(const QColor&)' is deprecated: Use QTableWidgetItem::setBackground() instead [-Wdeprecated-declarations] 1005 | item->setBackgroundColor(c); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~ /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtablewidget.h:142:17: note: declared here 142 | inline void setBackgroundColor(const QColor &color) | ^~~~~~~~~~~~~~~~~~ [ 95%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SpectraViewWidget.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SpectraViewWidget.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SpectraViewWidget.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SpectraViewWidget.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraViewWidget.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraViewWidget.cpp: In member function 'void OpenMS::SpectraViewWidget::updateEntries(const OpenMS::LayerData&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraViewWidget.cpp:767:21: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::ItemFlag; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 767 | item->setFlags(nullptr); | ~~~~~~~~~~~~~~^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qglobal.h:1305, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QtCore:4, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/SpectraViewWidget.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraViewWidget.cpp:35: /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectraViewWidget.cpp:773:21: warning: 'constexpr QFlags::QFlags(Zero) [with Enum = Qt::ItemFlag; Zero = int QFlags::Private::*]' is deprecated: Use default constructor instead [-Wdeprecated-declarations] 773 | item->setFlags(nullptr); | ~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qflags.h:123:80: note: declared here 123 | QT_DEPRECATED_X("Use default constructor instead") Q_DECL_CONSTEXPR inline QFlags(Zero) noexcept : i(0) {} | ^~~~~~ [ 95%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum1DCanvas.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum1DCanvas.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum1DCanvas.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum1DCanvas.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/Spectrum1DCanvas.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/Spectrum1DCanvas.cpp: In member function 'void OpenMS::Spectrum1DCanvas::paint(QPainter*, QPaintEvent*)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/Spectrum1DCanvas.cpp:700:36: warning: 'void QTime::start()' is deprecated: Use QElapsedTimer instead [-Wdeprecated-declarations] 700 | if (show_timing_) { timer.start(); } | ~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/QTime:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/Spectrum1DCanvas.cpp:40: /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:235:55: note: declared here 235 | QT_DEPRECATED_X("Use QElapsedTimer instead") void start(); | ^~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/Spectrum1DCanvas.cpp:934:51: warning: 'int QTime::elapsed() const' is deprecated: Use QElapsedTimer instead [-Wdeprecated-declarations] 934 | cout << "paint event took " << timer.elapsed() << " ms" << endl; | ~~~~~~~~~~~~~^~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:237:54: note: declared here 237 | QT_DEPRECATED_X("Use QElapsedTimer instead") int elapsed() const; | ^~~~~~~ [ 95%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum1DWidget.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum1DWidget.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum1DWidget.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum1DWidget.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/Spectrum1DWidget.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/Spectrum1DWidget.cpp: In member function 'virtual void OpenMS::Spectrum1DWidget::saveAsImage()': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/Spectrum1DWidget.cpp:369:43: warning: 'static QPixmap QPixmap::grabWidget(QObject*, int, int, int, int)' is deprecated: Use QWidget::grab() instead [-Wdeprecated-declarations] 369 | QPixmap pixmap = QPixmap::grabWidget(this); | ~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/qbrush.h:52, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qpen.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtGui/QPen:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/ANNOTATION/Annotations1DContainer.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/LayerData.h:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/SpectrumCanvas.h:44, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/SpectrumWidget.h:43, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/Spectrum1DWidget.h:44, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/Spectrum1DWidget.cpp:36: /usr/include/x86_64-linux-gnu/qt5/QtGui/qpixmap.h:122:20: note: declared here 122 | static QPixmap grabWidget(QObject *widget, int x = 0, int y = 0, int w = -1, int h = -1); | ^~~~~~~~~~ [ 95%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum2DCanvas.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum2DCanvas.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum2DCanvas.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum2DCanvas.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/Spectrum2DCanvas.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/Spectrum2DCanvas.cpp: In member function 'virtual void OpenMS::Spectrum2DCanvas::paintEvent(QPaintEvent*)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/Spectrum2DCanvas.cpp:1540:26: warning: 'void QTime::start()' is deprecated: Use QElapsedTimer instead [-Wdeprecated-declarations] 1540 | overall_timer.start(); | ~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/QDate:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DateTime.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/DataProcessing.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:43, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/LayerData.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/SpectrumCanvas.h:44, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/Spectrum2DCanvas.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/Spectrum2DCanvas.cpp:36: /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:235:55: note: declared here 235 | QT_DEPRECATED_X("Use QElapsedTimer instead") void start(); | ^~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/Spectrum2DCanvas.cpp:1568:28: warning: 'void QTime::start()' is deprecated: Use QElapsedTimer instead [-Wdeprecated-declarations] 1568 | layer_timer.start(); | ~~~~~~~~~~~~~~~~~^~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:235:55: note: declared here 235 | QT_DEPRECATED_X("Use QElapsedTimer instead") void start(); | ^~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/Spectrum2DCanvas.cpp:1612:71: warning: 'int QTime::elapsed() const' is deprecated: Use QElapsedTimer instead [-Wdeprecated-declarations] 1612 | cout << " -layer " << i << " time: " << layer_timer.elapsed() << " ms" << endl; | ~~~~~~~~~~~~~~~~~~~^~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:237:54: note: declared here 237 | QT_DEPRECATED_X("Use QElapsedTimer instead") int elapsed() const; | ^~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/Spectrum2DCanvas.cpp:1622:45: warning: 'QVector QRegion::rects() const' is deprecated: Use begin()/end() instead [-Wdeprecated-declarations] 1622 | QVector rects = e->region().rects(); | ~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/qmatrix.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qbrush.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qpen.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtGui/QPen:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/ANNOTATION/Annotations1DContainer.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/LayerData.h:47: /usr/include/x86_64-linux-gnu/qt5/QtGui/qregion.h:125:20: note: declared here 125 | QVector rects() const; | ^~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/Spectrum2DCanvas.cpp:1720:59: warning: 'int QTime::elapsed() const' is deprecated: Use QElapsedTimer instead [-Wdeprecated-declarations] 1720 | cout << " -overall time: " << overall_timer.elapsed() << " ms" << endl << endl; | ~~~~~~~~~~~~~~~~~~~~~^~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:237:54: note: declared here 237 | QT_DEPRECATED_X("Use QElapsedTimer instead") int elapsed() const; | ^~~~~~~ [ 95%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum2DWidget.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum2DWidget.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum2DWidget.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum2DWidget.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/Spectrum2DWidget.cpp [ 95%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum3DCanvas.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum3DCanvas.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum3DCanvas.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum3DCanvas.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/Spectrum3DCanvas.cpp [ 95%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum3DOpenGLCanvas.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum3DOpenGLCanvas.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum3DOpenGLCanvas.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum3DOpenGLCanvas.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/Spectrum3DOpenGLCanvas.cpp [ 95%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum3DWidget.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum3DWidget.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum3DWidget.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum3DWidget.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/Spectrum3DWidget.cpp [ 95%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SpectrumCanvas.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SpectrumCanvas.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SpectrumCanvas.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SpectrumCanvas.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectrumCanvas.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectrumCanvas.cpp: In member function 'virtual void OpenMS::SpectrumCanvas::wheelEvent(QWheelEvent*)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectrumCanvas.cpp:202:15: warning: 'int QWheelEvent::x() const' is deprecated: Use position() [-Wdeprecated-declarations] 202 | zoom_(e->x(), e->y(), e->delta() > 0); | ~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/qtextlayout.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qabstracttextdocumentlayout.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtGui/QtGui:5, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:4, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QtWidgets:3, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/SpectrumCanvas.h:48, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectrumCanvas.cpp:36: /usr/include/x86_64-linux-gnu/qt5/QtGui/qevent.h:229:16: note: declared here 229 | inline int x() const { return int(p.x()); } | ^ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectrumCanvas.cpp:202:23: warning: 'int QWheelEvent::y() const' is deprecated: Use position() [-Wdeprecated-declarations] 202 | zoom_(e->x(), e->y(), e->delta() > 0); | ~~~~^~ /usr/include/x86_64-linux-gnu/qt5/QtGui/qevent.h:231:16: note: declared here 231 | inline int y() const { return int(p.y()); } | ^ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectrumCanvas.cpp:202:35: warning: 'int QWheelEvent::delta() const' is deprecated: Use angleDelta() [-Wdeprecated-declarations] 202 | zoom_(e->x(), e->y(), e->delta() > 0); | ~~~~~~~~^~ /usr/include/x86_64-linux-gnu/qt5/QtGui/qevent.h:219:16: note: declared here 219 | inline int delta() const { return qt4D; } | ^~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectrumCanvas.cpp: In member function 'void OpenMS::SpectrumCanvas::drawText_(QPainter&, QStringList)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectrumCanvas.cpp:1025:43: warning: 'int QFontMetrics::width(const QString&, int) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 1025 | width = max(width, 4 + metrics.width(text[i])); | ~~~~~~~~~~~~~^~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/QtGui:26: /usr/include/x86_64-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ [ 95%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SpectrumWidget.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SpectrumWidget.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SpectrumWidget.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SpectrumWidget.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectrumWidget.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectrumWidget.cpp: In member function 'virtual void OpenMS::SpectrumWidget::saveAsImage()': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectrumWidget.cpp:232:41: warning: 'static QPixmap QPixmap::grabWidget(QObject*, int, int, int, int)' is deprecated: Use QWidget::grab() instead [-Wdeprecated-declarations] 232 | QPixmap pixmap = QPixmap::grabWidget(this); | ~~~~~~~~~~~~~~~~~~~^~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/qbrush.h:52, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qpen.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtGui/QPen:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/ANNOTATION/Annotations1DContainer.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/LayerData.h:47, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/SpectrumCanvas.h:44, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/SpectrumWidget.h:43, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SpectrumWidget.cpp:35: /usr/include/x86_64-linux-gnu/qt5/QtGui/qpixmap.h:122:20: note: declared here 122 | static QPixmap grabWidget(QObject *widget, int x = 0, int y = 0, int w = -1, int h = -1); | ^~~~~~~~~~ [ 96%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SwathLibraryStats.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SwathLibraryStats.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SwathLibraryStats.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SwathLibraryStats.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/SwathLibraryStats.cpp [ 96%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASEdge.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASEdge.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASEdge.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASEdge.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASEdge.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASEdge.cpp: In member function 'virtual void OpenMS::TOPPASEdge::paint(QPainter*, const QStyleOptionGraphicsItem*, QWidget*)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASEdge.cpp:215:32: warning: 'int QFontMetrics::width(const QString&, int) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 215 | int text_width=fm.width(str); | ~~~~~~~~^~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/qpainter.h:59, from /usr/include/x86_64-linux-gnu/qt5/QtGui/QPainter:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPASVertex.h:77, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPASToolVertex.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPASScene.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASEdge.cpp:36: /usr/include/x86_64-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASEdge.cpp:235:32: warning: 'int QFontMetrics::width(const QString&, int) const' is deprecated: Use QFontMetrics::horizontalAdvance [-Wdeprecated-declarations] 235 | int text_width = fm.width(str); | ~~~~~~~~^~~~~ /usr/include/x86_64-linux-gnu/qt5/QtGui/qfontmetrics.h:106:9: note: declared here 106 | int width(const QString &, int len = -1) const; | ^~~~~ [ 96%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASInputFileListVertex.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASInputFileListVertex.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASInputFileListVertex.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASInputFileListVertex.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASInputFileListVertex.cpp [ 96%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASLogWindow.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASLogWindow.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASLogWindow.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASLogWindow.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASLogWindow.cpp [ 96%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASMergerVertex.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASMergerVertex.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASMergerVertex.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASMergerVertex.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASMergerVertex.cpp [ 96%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASOutputFileListVertex.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASOutputFileListVertex.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASOutputFileListVertex.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASOutputFileListVertex.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASOutputFileListVertex.cpp [ 96%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASResource.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASResource.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASResource.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASResource.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASResource.cpp [ 96%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASResources.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASResources.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASResources.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASResources.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASResources.cpp [ 96%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASScene.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASScene.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASScene.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASScene.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASScene.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASScene.cpp: In member function 'virtual void OpenMS::TOPPASScene::contextMenuEvent(QGraphicsSceneContextMenuEvent*)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASScene.cpp:1833:70: warning: 'QList QSet::toList() const [with T = QString]' is deprecated: Use values() instead. [-Wdeprecated-declarations] 1833 | QList supported_actions = supported_actions_set.toList(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qgraphicssceneevent.h:49, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QGraphicsSceneMouseEvent:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPASVertex.h:79, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPASToolVertex.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPASScene.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASScene.cpp:35: /usr/include/x86_64-linux-gnu/qt5/QtCore/qset.h:265:14: note: declared here 265 | QList toList() const { return values(); } | ^~~~~~ [ 96%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASSplitterVertex.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASSplitterVertex.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASSplitterVertex.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASSplitterVertex.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASSplitterVertex.cpp [ 96%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASTabBar.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASTabBar.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASTabBar.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASTabBar.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASTabBar.cpp [ 96%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASToolVertex.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASToolVertex.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASToolVertex.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASToolVertex.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASToolVertex.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASToolVertex.cpp: In member function 'void OpenMS::TOPPASToolVertex::getParameters_(QVector&, bool) const': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASToolVertex.cpp:326:10: warning: 'void qSort(Container&) [with Container = QVector]' is deprecated: Use std::sort [-Wdeprecated-declarations] 326 | qSort(io_infos); | ~~~~~^~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qlist.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qstringlist.h:41, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qcolor.h:46, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qpixmap.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtGui/qpainter.h:48, from /usr/include/x86_64-linux-gnu/qt5/QtGui/QPainter:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPASVertex.h:77, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPASToolVertex.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASToolVertex.cpp:35: /usr/include/x86_64-linux-gnu/qt5/QtCore/qalgorithms.h:188:46: note: declared here 188 | QT_DEPRECATED_X("Use std::sort") inline void qSort(Container &c) | ^~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASToolVertex.cpp: In member function 'QString OpenMS::TOPPASToolVertex::toolnameWithWhitespacesForFancyWordWrapping_(QPainter*, const QString&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASToolVertex.cpp:394:61: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 394 | QStringList parts = str.split(QRegExp("\\s+"), QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qhashfunctions.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qlist.h:47: /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:602:9: note: declared here 602 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASToolVertex.cpp:394:61: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 394 | QStringList parts = str.split(QRegExp("\\s+"), QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:602:9: note: declared here 602 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASToolVertex.cpp:394:34: warning: 'QStringList QString::split(const QRegExp&, SplitBehavior) const' is deprecated: Use split(const QRegularExpression &, Qt::SplitBehavior) variant instead [-Wdeprecated-declarations] 394 | QStringList parts = str.split(QRegExp("\\s+"), QString::SkipEmptyParts); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:619:17: note: declared here 619 | QStringList split(const QRegExp &sep, SplitBehavior behavior) const; | ^~~~~ [ 96%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASTreeView.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASTreeView.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASTreeView.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASTreeView.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASTreeView.cpp [ 98%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASVertex.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASVertex.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASVertex.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASVertex.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASVertex.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASVertex.cpp: In member function 'void OpenMS::TOPPASVertex::paint(QPainter*, const QStyleOptionGraphicsItem*, QWidget*, bool)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASVertex.cpp:209:39: warning: 'void QPainterPath::addRoundRect(const QRectF&, int)' is deprecated: Use addRoundedRect(..., Qt::RelativeSize) instead [-Wdeprecated-declarations] 209 | if (round_shape) path.addRoundRect(boundingRect().marginsRemoved(QMarginsF(1, 1, 1, 1)), 20); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/QPainterPath:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/TOPPASVertex.h:78, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASVertex.cpp:35: /usr/include/x86_64-linux-gnu/qt5/QtGui/qpainterpath.h:152:10: note: declared here 152 | void addRoundRect(const QRectF &rect, int roundness); | ^~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASVertex.cpp: In member function 'virtual QPainterPath OpenMS::TOPPASVertex::shape() const': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASVertex.cpp:230:23: warning: 'void QPainterPath::addRoundRect(const QRectF&, int, int)' is deprecated: Use addRoundedRect(..., Qt::RelativeSize) instead [-Wdeprecated-declarations] 230 | shape.addRoundRect(boundingRect(), 20, 20); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtGui/qpainterpath.h:147:10: note: declared here 147 | void addRoundRect(const QRectF &rect, int xRnd, int yRnd); | ^~~~~~~~~~~~ [ 98%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASWidget.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASWidget.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASWidget.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASWidget.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASWidget.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASWidget.cpp: In member function 'virtual void OpenMS::TOPPASWidget::wheelEvent(QWheelEvent*)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASWidget.cpp:101:22: warning: 'int QWheelEvent::delta() const' is deprecated: Use angleDelta() [-Wdeprecated-declarations] 101 | zoom(event->delta() < 0); | ~~~~~~~~~~~~^~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtGui/QDragEnterEvent:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPASWidget.cpp:44: /usr/include/x86_64-linux-gnu/qt5/QtGui/qevent.h:219:16: note: declared here 219 | inline int delta() const { return qt4D; } | ^~~~~ [ 98%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPViewIdentificationViewBehavior.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPViewIdentificationViewBehavior.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPViewIdentificationViewBehavior.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPViewIdentificationViewBehavior.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPViewIdentificationViewBehavior.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPViewIdentificationViewBehavior.cpp: In member function 'void OpenMS::TOPPViewIdentificationViewBehavior::addPeakAnnotationsFromID_(const OpenMS::PeptideHit&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPViewIdentificationViewBehavior.cpp:1178:79: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 1178 | QStringList lines = label.toQString().split(QRegExp("[\r\n]"), QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qobject.h:47, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qwidget.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/qtabbar.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtWidgets/QTabBar:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/EnhancedTabBar.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/APPLICATIONS/TOPPViewBase.h:43, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPViewIdentificationViewBehavior.cpp:38: /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:602:9: note: declared here 602 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPViewIdentificationViewBehavior.cpp:1178:79: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 1178 | QStringList lines = label.toQString().split(QRegExp("[\r\n]"), QString::SkipEmptyParts); | ^~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:602:9: note: declared here 602 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPViewIdentificationViewBehavior.cpp:1178:50: warning: 'QStringList QString::split(const QRegExp&, SplitBehavior) const' is deprecated: Use split(const QRegularExpression &, Qt::SplitBehavior) variant instead [-Wdeprecated-declarations] 1178 | QStringList lines = label.toQString().split(QRegExp("[\r\n]"), QString::SkipEmptyParts); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:619:17: note: declared here 619 | QStringList split(const QRegExp &sep, SplitBehavior behavior) const; | ^~~~~ [ 98%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPViewSpectraViewBehavior.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPViewSpectraViewBehavior.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPViewSpectraViewBehavior.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPViewSpectraViewBehavior.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/TOPPViewSpectraViewBehavior.cpp [ 98%] Building CXX object src/openms_gui/CMakeFiles/OpenMS_GUI.dir/qrc_resources.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DOpenMS_GUI_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/OpenMS_GUI_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/OpenMS_GUI.dir/qrc_resources.cpp.o -MF CMakeFiles/OpenMS_GUI.dir/qrc_resources.cpp.o.d -o CMakeFiles/OpenMS_GUI.dir/qrc_resources.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/qrc_resources.cpp [ 98%] Linking CXX shared library ../../lib/x86_64-linux-gnu/libOpenMS_GUI.so cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMS_GUI.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libOpenMS_GUI.so.2.6.0 -o ../../lib/x86_64-linux-gnu/libOpenMS_GUI.so.2.6.0 CMakeFiles/OpenMS_GUI.dir/OpenMS_GUI_autogen/mocs_compilation.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/INIFileEditorWindow.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/SwathWizardBase.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/TOPPASBase.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/MISC/QApplicationTOPP.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/DataFilterDialog.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/FeatureEditDialog.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/HistogramDialog.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/LayerStatisticsDialog.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/PythonModuleRequirement.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/PythonSelector.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/SaveImageDialog.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/Spectrum1DGoToDialog.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/Spectrum1DPrefDialog.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/Spectrum2DGoToDialog.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/Spectrum2DPrefDialog.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/Spectrum3DPrefDialog.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/SpectrumAlignmentDialog.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/SwathTabWidget.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPASIOMappingDialog.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPASInputFileDialog.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPASInputFilesDialog.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPASOutputFilesDialog.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPASToolConfigDialog.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPASVertexNameDialog.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPViewOpenDialog.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPViewPrefDialog.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TheoreticalSpectrumGenerationDialog.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/ToolsDialog.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MISC/ExternalProcessMBox.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MISC/GUIHelpers.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/AcquisitionInfoVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/AcquisitionVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/BaseVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/BaseVisualizerGUI.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ContactPersonVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/DataProcessingVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/DigestionVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/DocumentIdentifierVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ExperimentalSettingsVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/GradientVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/HPLCVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/InstrumentSettingsVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/InstrumentVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/IonDetectorVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/IonSourceVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/MassAnalyzerVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/MetaInfoDescriptionVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/MetaInfoVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ModificationVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/PeptideHitVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/PeptideIdentificationVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/PrecursorVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ProteinHitVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ProteinIdentificationVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/SampleVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ScanWindowVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/SoftwareVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/SourceFileVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/SpectrumSettingsVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/TaggingVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ProductVisualizer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DDistanceItem.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DItem.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DPeakItem.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DCaret.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DTextItem.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotations1DContainer.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/AxisPainter.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/AxisTickCalculator.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/AxisWidget.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ColorSelector.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/EnhancedTabBar.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/EnhancedTabBarWidgetInterface.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/EnhancedWorkspace.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/FilterList.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/GUIProgressLoggerImpl.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/HistogramWidget.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/InputFile.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/InputFileList.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/LayerData.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ListEditor.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MetaDataBrowser.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MultiGradient.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MultiGradientSelector.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/OutputDirectory.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ParamEditor.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SpectraIdentificationViewWidget.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SpectraViewWidget.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum1DCanvas.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum1DWidget.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum2DCanvas.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum2DWidget.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum3DCanvas.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum3DOpenGLCanvas.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum3DWidget.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SpectrumCanvas.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SpectrumWidget.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SwathLibraryStats.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASEdge.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASInputFileListVertex.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASLogWindow.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASMergerVertex.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASOutputFileListVertex.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASResource.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASResources.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASScene.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASSplitterVertex.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASTabBar.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASToolVertex.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASTreeView.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASVertex.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASWidget.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPViewIdentificationViewBehavior.cpp.o CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPViewSpectraViewBehavior.cpp.o CMakeFiles/OpenMS_GUI.dir/qrc_resources.cpp.o ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 /usr/lib/x86_64-linux-gnu/libQt5Svg.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/cmake -E cmake_symlink_library ../../lib/x86_64-linux-gnu/libOpenMS_GUI.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenMS_GUI.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenMS_GUI.so make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target OpenMS_GUI make -f src/openms_gui/CMakeFiles/TOPPView_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/TOPPView_autogen_timestamp_deps.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPView_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/TOPPView_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/TOPPView_autogen_timestamp_deps.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms_gui/CMakeFiles/TOPPView_autogen_timestamp_deps.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target TOPPView_autogen_timestamp_deps make -f src/openms_gui/CMakeFiles/TOPPView_autogen.dir/build.make src/openms_gui/CMakeFiles/TOPPView_autogen.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPView_autogen.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/TOPPView_autogen.dir/build.make src/openms_gui/CMakeFiles/TOPPView_autogen.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Automatic MOC for target TOPPView cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPView_autogen.dir/AutogenInfo.json release AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPView.cpp" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/src/openms_gui/TOPPView_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/src/openms_gui/TOPPView_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPView_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPView_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/cmake -E touch /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/TOPPView_autogen/timestamp make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target TOPPView_autogen make -f src/openms_gui/CMakeFiles/TOPPView.dir/build.make src/openms_gui/CMakeFiles/TOPPView.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPView.dir/DependInfo.cmake "--color=" Dependencies file "src/openms_gui/TOPPView_autogen/deps" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPView.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target TOPPView make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/TOPPView.dir/build.make src/openms_gui/CMakeFiles/TOPPView.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Building CXX object src/openms_gui/CMakeFiles/TOPPView.dir/TOPPView_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/TOPPView_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/TOPPView.dir/TOPPView_autogen/mocs_compilation.cpp.o -MF CMakeFiles/TOPPView.dir/TOPPView_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/TOPPView.dir/TOPPView_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/TOPPView_autogen/mocs_compilation.cpp [ 98%] Building CXX object src/openms_gui/CMakeFiles/TOPPView.dir/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPView.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/TOPPView_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/TOPPView.dir/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPView.cpp.o -MF CMakeFiles/TOPPView.dir/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPView.cpp.o.d -o CMakeFiles/TOPPView.dir/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPView.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPView.cpp [ 98%] Linking CXX executable ../../bin/TOPPView cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/cmake -E cmake_link_script CMakeFiles/TOPPView.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/TOPPView.dir/TOPPView_autogen/mocs_compilation.cpp.o CMakeFiles/TOPPView.dir/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPView.cpp.o -o ../../bin/TOPPView ../../lib/x86_64-linux-gnu/libOpenMS_GUI.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 /usr/lib/x86_64-linux-gnu/libQt5Svg.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target TOPPView make -f src/openms_gui/CMakeFiles/INIFileEditor_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/INIFileEditor_autogen_timestamp_deps.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/INIFileEditor_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/INIFileEditor_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/INIFileEditor_autogen_timestamp_deps.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms_gui/CMakeFiles/INIFileEditor_autogen_timestamp_deps.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target INIFileEditor_autogen_timestamp_deps make -f src/openms_gui/CMakeFiles/INIFileEditor_autogen.dir/build.make src/openms_gui/CMakeFiles/INIFileEditor_autogen.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/INIFileEditor_autogen.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/INIFileEditor_autogen.dir/build.make src/openms_gui/CMakeFiles/INIFileEditor_autogen.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Automatic MOC for target INIFileEditor cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/INIFileEditor_autogen.dir/AutogenInfo.json release AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/INIFileEditor.cpp" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/src/openms_gui/INIFileEditor_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/src/openms_gui/INIFileEditor_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/INIFileEditor_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/INIFileEditor_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/cmake -E touch /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/INIFileEditor_autogen/timestamp make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target INIFileEditor_autogen make -f src/openms_gui/CMakeFiles/INIFileEditor.dir/build.make src/openms_gui/CMakeFiles/INIFileEditor.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/INIFileEditor.dir/DependInfo.cmake "--color=" Dependencies file "src/openms_gui/INIFileEditor_autogen/deps" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/INIFileEditor.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target INIFileEditor make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/INIFileEditor.dir/build.make src/openms_gui/CMakeFiles/INIFileEditor.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Building CXX object src/openms_gui/CMakeFiles/INIFileEditor.dir/INIFileEditor_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/INIFileEditor_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/INIFileEditor.dir/INIFileEditor_autogen/mocs_compilation.cpp.o -MF CMakeFiles/INIFileEditor.dir/INIFileEditor_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/INIFileEditor.dir/INIFileEditor_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/INIFileEditor_autogen/mocs_compilation.cpp [ 98%] Building CXX object src/openms_gui/CMakeFiles/INIFileEditor.dir/source/VISUAL/APPLICATIONS/GUITOOLS/INIFileEditor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/INIFileEditor_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/INIFileEditor.dir/source/VISUAL/APPLICATIONS/GUITOOLS/INIFileEditor.cpp.o -MF CMakeFiles/INIFileEditor.dir/source/VISUAL/APPLICATIONS/GUITOOLS/INIFileEditor.cpp.o.d -o CMakeFiles/INIFileEditor.dir/source/VISUAL/APPLICATIONS/GUITOOLS/INIFileEditor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/INIFileEditor.cpp [ 98%] Linking CXX executable ../../bin/INIFileEditor cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/cmake -E cmake_link_script CMakeFiles/INIFileEditor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/INIFileEditor.dir/INIFileEditor_autogen/mocs_compilation.cpp.o CMakeFiles/INIFileEditor.dir/source/VISUAL/APPLICATIONS/GUITOOLS/INIFileEditor.cpp.o -o ../../bin/INIFileEditor ../../lib/x86_64-linux-gnu/libOpenMS_GUI.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 /usr/lib/x86_64-linux-gnu/libQt5Svg.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target INIFileEditor make -f src/openms_gui/CMakeFiles/SwathWizard_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/SwathWizard_autogen_timestamp_deps.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/SwathWizard_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/SwathWizard_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/SwathWizard_autogen_timestamp_deps.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms_gui/CMakeFiles/SwathWizard_autogen_timestamp_deps.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target SwathWizard_autogen_timestamp_deps make -f src/openms_gui/CMakeFiles/SwathWizard_autogen.dir/build.make src/openms_gui/CMakeFiles/SwathWizard_autogen.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/SwathWizard_autogen.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/SwathWizard_autogen.dir/build.make src/openms_gui/CMakeFiles/SwathWizard_autogen.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Automatic MOC for target SwathWizard cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/SwathWizard_autogen.dir/AutogenInfo.json release AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/SwathWizard.cpp" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/src/openms_gui/SwathWizard_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/src/openms_gui/SwathWizard_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/SwathWizard_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/SwathWizard_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/cmake -E touch /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/SwathWizard_autogen/timestamp make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target SwathWizard_autogen make -f src/openms_gui/CMakeFiles/SwathWizard.dir/build.make src/openms_gui/CMakeFiles/SwathWizard.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/SwathWizard.dir/DependInfo.cmake "--color=" Dependencies file "src/openms_gui/SwathWizard_autogen/deps" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/SwathWizard.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target SwathWizard make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/SwathWizard.dir/build.make src/openms_gui/CMakeFiles/SwathWizard.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Building CXX object src/openms_gui/CMakeFiles/SwathWizard.dir/SwathWizard_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/SwathWizard_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/SwathWizard.dir/SwathWizard_autogen/mocs_compilation.cpp.o -MF CMakeFiles/SwathWizard.dir/SwathWizard_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/SwathWizard.dir/SwathWizard_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/SwathWizard_autogen/mocs_compilation.cpp [ 98%] Building CXX object src/openms_gui/CMakeFiles/SwathWizard.dir/source/VISUAL/APPLICATIONS/GUITOOLS/SwathWizard.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/SwathWizard_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/SwathWizard.dir/source/VISUAL/APPLICATIONS/GUITOOLS/SwathWizard.cpp.o -MF CMakeFiles/SwathWizard.dir/source/VISUAL/APPLICATIONS/GUITOOLS/SwathWizard.cpp.o.d -o CMakeFiles/SwathWizard.dir/source/VISUAL/APPLICATIONS/GUITOOLS/SwathWizard.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/SwathWizard.cpp [ 98%] Linking CXX executable ../../bin/SwathWizard cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/cmake -E cmake_link_script CMakeFiles/SwathWizard.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/SwathWizard.dir/SwathWizard_autogen/mocs_compilation.cpp.o CMakeFiles/SwathWizard.dir/source/VISUAL/APPLICATIONS/GUITOOLS/SwathWizard.cpp.o -o ../../bin/SwathWizard ../../lib/x86_64-linux-gnu/libOpenMS_GUI.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 /usr/lib/x86_64-linux-gnu/libQt5Svg.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target SwathWizard make -f src/openms_gui/CMakeFiles/TOPPAS_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/TOPPAS_autogen_timestamp_deps.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPAS_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/TOPPAS_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/TOPPAS_autogen_timestamp_deps.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms_gui/CMakeFiles/TOPPAS_autogen_timestamp_deps.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target TOPPAS_autogen_timestamp_deps make -f src/openms_gui/CMakeFiles/TOPPAS_autogen.dir/build.make src/openms_gui/CMakeFiles/TOPPAS_autogen.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPAS_autogen.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/TOPPAS_autogen.dir/build.make src/openms_gui/CMakeFiles/TOPPAS_autogen.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Automatic MOC for target TOPPAS cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPAS_autogen.dir/AutogenInfo.json release AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPAS.cpp" AutoMoc: Generating MOC compilation "SRC:/obj-x86_64-linux-gnu/src/openms_gui/TOPPAS_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-x86_64-linux-gnu/src/openms_gui/TOPPAS_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPAS_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPAS_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/cmake -E touch /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/TOPPAS_autogen/timestamp make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target TOPPAS_autogen make -f src/openms_gui/CMakeFiles/TOPPAS.dir/build.make src/openms_gui/CMakeFiles/TOPPAS.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPAS.dir/DependInfo.cmake "--color=" Dependencies file "src/openms_gui/TOPPAS_autogen/deps" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPAS.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target TOPPAS make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/TOPPAS.dir/build.make src/openms_gui/CMakeFiles/TOPPAS.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Building CXX object src/openms_gui/CMakeFiles/TOPPAS.dir/TOPPAS_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/TOPPAS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/TOPPAS.dir/TOPPAS_autogen/mocs_compilation.cpp.o -MF CMakeFiles/TOPPAS.dir/TOPPAS_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/TOPPAS.dir/TOPPAS_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/TOPPAS_autogen/mocs_compilation.cpp [100%] Building CXX object src/openms_gui/CMakeFiles/TOPPAS.dir/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPAS.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/TOPPAS_autogen/include -I/build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/openms_gui/CMakeFiles/TOPPAS.dir/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPAS.cpp.o -MF CMakeFiles/TOPPAS.dir/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPAS.cpp.o.d -o CMakeFiles/TOPPAS.dir/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPAS.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPAS.cpp [100%] Linking CXX executable ../../bin/TOPPAS cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui && /usr/bin/cmake -E cmake_link_script CMakeFiles/TOPPAS.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/TOPPAS.dir/TOPPAS_autogen/mocs_compilation.cpp.o CMakeFiles/TOPPAS.dir/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPAS.cpp.o -o ../../bin/TOPPAS ../../lib/x86_64-linux-gnu/libOpenMS_GUI.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 /usr/lib/x86_64-linux-gnu/libQt5Svg.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Built target TOPPAS make -f src/openms_gui/CMakeFiles/GUI.dir/build.make src/openms_gui/CMakeFiles/GUI.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/GUI.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/GUI.dir/build.make src/openms_gui/CMakeFiles/GUI.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms_gui/CMakeFiles/GUI.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Built target GUI make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f CMakeFiles/Makefile2 TOPP make[3]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/openms-2.6.0+cleaned1 -B/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/CMakeFiles 81 make -f CMakeFiles/Makefile2 src/topp/CMakeFiles/TOPP.dir/all make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/build.make src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/build.make src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 1%] Built target OpenSwathAlgo make -f src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/build.make src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/build.make src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 1%] Built target OpenMS_autogen_timestamp_deps make -f src/openms/CMakeFiles/OpenMS_autogen.dir/build.make src/openms/CMakeFiles/OpenMS_autogen.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS_autogen.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms/CMakeFiles/OpenMS_autogen.dir/build.make src/openms/CMakeFiles/OpenMS_autogen.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms/CMakeFiles/OpenMS_autogen.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 1%] Built target OpenMS_autogen make -f src/openms/CMakeFiles/OpenMS.dir/build.make src/openms/CMakeFiles/OpenMS.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms/CMakeFiles/OpenMS.dir/build.make src/openms/CMakeFiles/OpenMS.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms/CMakeFiles/OpenMS.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 65%] Built target OpenMS make -f src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 65%] Built target OpenMS_GUI_autogen_timestamp_deps make -f src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/DependInfo.cmake "--color=" Dependencies file "src/openms_gui/OpenMS_GUI_autogen/deps" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target OpenMS_GUI_autogen make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 65%] Built target OpenMS_GUI_autogen make -f src/openms_gui/CMakeFiles/OpenMS_GUI.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/DependInfo.cmake "--color=" Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/OpenMS_GUI_autogen/mocs_compilation.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/qrc_resources.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DCaret.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DDistanceItem.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DItem.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DPeakItem.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotation1DTextItem.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ANNOTATION/Annotations1DContainer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/INIFileEditorWindow.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/MISC/QApplicationTOPP.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/SwathWizardBase.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/TOPPASBase.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/AxisPainter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/AxisTickCalculator.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/AxisWidget.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ColorSelector.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/DataFilterDialog.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/FeatureEditDialog.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/HistogramDialog.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/LayerStatisticsDialog.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/PythonModuleRequirement.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/PythonSelector.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/SaveImageDialog.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/Spectrum1DGoToDialog.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/Spectrum1DPrefDialog.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/Spectrum2DGoToDialog.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/Spectrum2DPrefDialog.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/Spectrum3DPrefDialog.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/SpectrumAlignmentDialog.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/SwathTabWidget.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPASIOMappingDialog.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPASInputFileDialog.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPASInputFilesDialog.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPASOutputFilesDialog.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPASToolConfigDialog.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPASVertexNameDialog.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPViewOpenDialog.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TOPPViewPrefDialog.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/TheoreticalSpectrumGenerationDialog.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/DIALOGS/ToolsDialog.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/EnhancedTabBar.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/EnhancedTabBarWidgetInterface.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/EnhancedWorkspace.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/FilterList.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/GUIProgressLoggerImpl.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/HistogramWidget.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/InputFile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/InputFileList.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/LayerData.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ListEditor.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MISC/ExternalProcessMBox.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MISC/GUIHelpers.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MetaDataBrowser.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MultiGradient.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/MultiGradientSelector.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/OutputDirectory.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/ParamEditor.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SpectraIdentificationViewWidget.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SpectraViewWidget.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum1DCanvas.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum1DWidget.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum2DCanvas.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum2DWidget.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum3DCanvas.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum3DOpenGLCanvas.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/Spectrum3DWidget.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SpectrumCanvas.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SpectrumWidget.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/SwathLibraryStats.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASEdge.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASInputFileListVertex.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASLogWindow.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASMergerVertex.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASOutputFileListVertex.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASResource.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASResources.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASScene.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASSplitterVertex.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASTabBar.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASToolVertex.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASTreeView.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASVertex.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPASWidget.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPViewIdentificationViewBehavior.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/TOPPViewSpectraViewBehavior.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/AcquisitionInfoVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/AcquisitionVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/BaseVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/BaseVisualizerGUI.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ContactPersonVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/DataProcessingVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/DigestionVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/DocumentIdentifierVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ExperimentalSettingsVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/GradientVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/HPLCVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/InstrumentSettingsVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/InstrumentVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/IonDetectorVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/IonSourceVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/MassAnalyzerVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/MetaInfoDescriptionVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/MetaInfoVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ModificationVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/PeptideHitVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/PeptideIdentificationVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/PrecursorVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ProductVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ProteinHitVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ProteinIdentificationVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/SampleVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/ScanWindowVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/SoftwareVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/SourceFileVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/SpectrumSettingsVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/OpenMS_GUI.dir/source/VISUAL/VISUALIZER/TaggingVisualizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target OpenMS_GUI make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/OpenMS_GUI.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms_gui/CMakeFiles/OpenMS_GUI.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 79%] Built target OpenMS_GUI make -f src/topp/CMakeFiles/Resampler.dir/build.make src/topp/CMakeFiles/Resampler.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp 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/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/Resampler.dir/Resampler.cpp.o -MF CMakeFiles/Resampler.dir/Resampler.cpp.o.d -o CMakeFiles/Resampler.dir/Resampler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/Resampler.cpp [ 79%] Linking CXX executable ../../bin/Resampler cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/Resampler.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Resampler.dir/Resampler.cpp.o -o ../../bin/Resampler ../../lib/x86_64-linux-gnu/libOpenMS_GUI.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 /usr/lib/x86_64-linux-gnu/libQt5Svg.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Svg.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 79%] Built target Resampler make -f src/topp/CMakeFiles/BaselineFilter.dir/build.make src/topp/CMakeFiles/BaselineFilter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/BaselineFilter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/BaselineFilter.dir/build.make src/topp/CMakeFiles/BaselineFilter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 79%] Building CXX object src/topp/CMakeFiles/BaselineFilter.dir/BaselineFilter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/BaselineFilter.dir/BaselineFilter.cpp.o -MF CMakeFiles/BaselineFilter.dir/BaselineFilter.cpp.o.d -o CMakeFiles/BaselineFilter.dir/BaselineFilter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/BaselineFilter.cpp [ 79%] Linking CXX executable ../../bin/BaselineFilter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/BaselineFilter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/BaselineFilter.dir/BaselineFilter.cpp.o -o ../../bin/BaselineFilter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 79%] Built target BaselineFilter make -f src/topp/CMakeFiles/CometAdapter.dir/build.make src/topp/CMakeFiles/CometAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/CometAdapter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/CometAdapter.dir/build.make src/topp/CMakeFiles/CometAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 79%] Building CXX object src/topp/CMakeFiles/CometAdapter.dir/CometAdapter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/CometAdapter.dir/CometAdapter.cpp.o -MF CMakeFiles/CometAdapter.dir/CometAdapter.cpp.o.d -o CMakeFiles/CometAdapter.dir/CometAdapter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/CometAdapter.cpp [ 80%] Linking CXX executable ../../bin/CometAdapter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/CometAdapter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/CometAdapter.dir/CometAdapter.cpp.o -o ../../bin/CometAdapter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target CometAdapter make -f src/topp/CMakeFiles/CompNovo.dir/build.make src/topp/CMakeFiles/CompNovo.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/CompNovo.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/CompNovo.dir/build.make src/topp/CMakeFiles/CompNovo.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/topp/CMakeFiles/CompNovo.dir/CompNovo.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/CompNovo.dir/CompNovo.cpp.o -MF CMakeFiles/CompNovo.dir/CompNovo.cpp.o.d -o CMakeFiles/CompNovo.dir/CompNovo.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/CompNovo.cpp [ 80%] Linking CXX executable ../../bin/CompNovo cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/CompNovo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/CompNovo.dir/CompNovo.cpp.o -o ../../bin/CompNovo ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target CompNovo make -f src/topp/CMakeFiles/CompNovoCID.dir/build.make src/topp/CMakeFiles/CompNovoCID.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/CompNovoCID.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/CompNovoCID.dir/build.make src/topp/CMakeFiles/CompNovoCID.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/topp/CMakeFiles/CompNovoCID.dir/CompNovoCID.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/CompNovoCID.dir/CompNovoCID.cpp.o -MF CMakeFiles/CompNovoCID.dir/CompNovoCID.cpp.o.d -o CMakeFiles/CompNovoCID.dir/CompNovoCID.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/CompNovoCID.cpp [ 80%] Linking CXX executable ../../bin/CompNovoCID cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/CompNovoCID.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/CompNovoCID.dir/CompNovoCID.cpp.o -o ../../bin/CompNovoCID ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target CompNovoCID make -f src/topp/CMakeFiles/ConsensusID.dir/build.make src/topp/CMakeFiles/ConsensusID.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ConsensusID.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/ConsensusID.dir/build.make src/topp/CMakeFiles/ConsensusID.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/topp/CMakeFiles/ConsensusID.dir/ConsensusID.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/ConsensusID.dir/ConsensusID.cpp.o -MF CMakeFiles/ConsensusID.dir/ConsensusID.cpp.o.d -o CMakeFiles/ConsensusID.dir/ConsensusID.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ConsensusID.cpp [ 80%] Linking CXX executable ../../bin/ConsensusID cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/ConsensusID.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/ConsensusID.dir/ConsensusID.cpp.o -o ../../bin/ConsensusID ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target ConsensusID make -f src/topp/CMakeFiles/ConsensusMapNormalizer.dir/build.make src/topp/CMakeFiles/ConsensusMapNormalizer.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ConsensusMapNormalizer.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/ConsensusMapNormalizer.dir/build.make src/topp/CMakeFiles/ConsensusMapNormalizer.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/topp/CMakeFiles/ConsensusMapNormalizer.dir/ConsensusMapNormalizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/ConsensusMapNormalizer.dir/ConsensusMapNormalizer.cpp.o -MF CMakeFiles/ConsensusMapNormalizer.dir/ConsensusMapNormalizer.cpp.o.d -o CMakeFiles/ConsensusMapNormalizer.dir/ConsensusMapNormalizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ConsensusMapNormalizer.cpp [ 80%] Linking CXX executable ../../bin/ConsensusMapNormalizer cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/ConsensusMapNormalizer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/ConsensusMapNormalizer.dir/ConsensusMapNormalizer.cpp.o -o ../../bin/ConsensusMapNormalizer ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target ConsensusMapNormalizer make -f src/topp/CMakeFiles/CruxAdapter.dir/build.make src/topp/CMakeFiles/CruxAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/CruxAdapter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/CruxAdapter.dir/build.make src/topp/CMakeFiles/CruxAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/topp/CMakeFiles/CruxAdapter.dir/CruxAdapter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/CruxAdapter.dir/CruxAdapter.cpp.o -MF CMakeFiles/CruxAdapter.dir/CruxAdapter.cpp.o.d -o CMakeFiles/CruxAdapter.dir/CruxAdapter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/CruxAdapter.cpp [ 80%] Linking CXX executable ../../bin/CruxAdapter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/CruxAdapter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/CruxAdapter.dir/CruxAdapter.cpp.o -o ../../bin/CruxAdapter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target CruxAdapter make -f src/topp/CMakeFiles/DatabaseSuitability.dir/build.make src/topp/CMakeFiles/DatabaseSuitability.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/DatabaseSuitability.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/DatabaseSuitability.dir/build.make src/topp/CMakeFiles/DatabaseSuitability.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/topp/CMakeFiles/DatabaseSuitability.dir/DatabaseSuitability.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/DatabaseSuitability.dir/DatabaseSuitability.cpp.o -MF CMakeFiles/DatabaseSuitability.dir/DatabaseSuitability.cpp.o.d -o CMakeFiles/DatabaseSuitability.dir/DatabaseSuitability.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/DatabaseSuitability.cpp [ 80%] Linking CXX executable ../../bin/DatabaseSuitability cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/DatabaseSuitability.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/DatabaseSuitability.dir/DatabaseSuitability.cpp.o -o ../../bin/DatabaseSuitability ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target DatabaseSuitability make -f src/topp/CMakeFiles/Decharger.dir/build.make src/topp/CMakeFiles/Decharger.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/Decharger.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/Decharger.dir/build.make src/topp/CMakeFiles/Decharger.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/topp/CMakeFiles/Decharger.dir/Decharger.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/Decharger.dir/Decharger.cpp.o -MF CMakeFiles/Decharger.dir/Decharger.cpp.o.d -o CMakeFiles/Decharger.dir/Decharger.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/Decharger.cpp [ 80%] Linking CXX executable ../../bin/Decharger cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/Decharger.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/Decharger.dir/Decharger.cpp.o -o ../../bin/Decharger ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target Decharger make -f src/topp/CMakeFiles/DTAExtractor.dir/build.make src/topp/CMakeFiles/DTAExtractor.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/DTAExtractor.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/DTAExtractor.dir/build.make src/topp/CMakeFiles/DTAExtractor.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/topp/CMakeFiles/DTAExtractor.dir/DTAExtractor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/DTAExtractor.dir/DTAExtractor.cpp.o -MF CMakeFiles/DTAExtractor.dir/DTAExtractor.cpp.o.d -o CMakeFiles/DTAExtractor.dir/DTAExtractor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/DTAExtractor.cpp [ 80%] Linking CXX executable ../../bin/DTAExtractor cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/DTAExtractor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/DTAExtractor.dir/DTAExtractor.cpp.o -o ../../bin/DTAExtractor ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target DTAExtractor make -f src/topp/CMakeFiles/EICExtractor.dir/build.make src/topp/CMakeFiles/EICExtractor.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/EICExtractor.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/EICExtractor.dir/build.make src/topp/CMakeFiles/EICExtractor.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/topp/CMakeFiles/EICExtractor.dir/EICExtractor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/EICExtractor.dir/EICExtractor.cpp.o -MF CMakeFiles/EICExtractor.dir/EICExtractor.cpp.o.d -o CMakeFiles/EICExtractor.dir/EICExtractor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/EICExtractor.cpp [ 80%] Linking CXX executable ../../bin/EICExtractor cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/EICExtractor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/EICExtractor.dir/EICExtractor.cpp.o -o ../../bin/EICExtractor ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target EICExtractor make -f src/topp/CMakeFiles/ExternalCalibration.dir/build.make src/topp/CMakeFiles/ExternalCalibration.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ExternalCalibration.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/ExternalCalibration.dir/build.make src/topp/CMakeFiles/ExternalCalibration.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/topp/CMakeFiles/ExternalCalibration.dir/ExternalCalibration.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/ExternalCalibration.dir/ExternalCalibration.cpp.o -MF CMakeFiles/ExternalCalibration.dir/ExternalCalibration.cpp.o.d -o CMakeFiles/ExternalCalibration.dir/ExternalCalibration.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ExternalCalibration.cpp [ 80%] Linking CXX executable ../../bin/ExternalCalibration cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExternalCalibration.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/ExternalCalibration.dir/ExternalCalibration.cpp.o -o ../../bin/ExternalCalibration ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target ExternalCalibration make -f src/topp/CMakeFiles/FalseDiscoveryRate.dir/build.make src/topp/CMakeFiles/FalseDiscoveryRate.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FalseDiscoveryRate.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FalseDiscoveryRate.dir/build.make src/topp/CMakeFiles/FalseDiscoveryRate.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/topp/CMakeFiles/FalseDiscoveryRate.dir/FalseDiscoveryRate.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/FalseDiscoveryRate.dir/FalseDiscoveryRate.cpp.o -MF CMakeFiles/FalseDiscoveryRate.dir/FalseDiscoveryRate.cpp.o.d -o CMakeFiles/FalseDiscoveryRate.dir/FalseDiscoveryRate.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FalseDiscoveryRate.cpp [ 80%] Linking CXX executable ../../bin/FalseDiscoveryRate cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/FalseDiscoveryRate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/FalseDiscoveryRate.dir/FalseDiscoveryRate.cpp.o -o ../../bin/FalseDiscoveryRate ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target FalseDiscoveryRate make -f src/topp/CMakeFiles/FeatureFinderCentroided.dir/build.make src/topp/CMakeFiles/FeatureFinderCentroided.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureFinderCentroided.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureFinderCentroided.dir/build.make src/topp/CMakeFiles/FeatureFinderCentroided.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/topp/CMakeFiles/FeatureFinderCentroided.dir/FeatureFinderCentroided.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/FeatureFinderCentroided.dir/FeatureFinderCentroided.cpp.o -MF CMakeFiles/FeatureFinderCentroided.dir/FeatureFinderCentroided.cpp.o.d -o CMakeFiles/FeatureFinderCentroided.dir/FeatureFinderCentroided.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderCentroided.cpp [ 80%] Linking CXX executable ../../bin/FeatureFinderCentroided cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/FeatureFinderCentroided.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/FeatureFinderCentroided.dir/FeatureFinderCentroided.cpp.o -o ../../bin/FeatureFinderCentroided ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target FeatureFinderCentroided make -f src/topp/CMakeFiles/FeatureFinderIdentification.dir/build.make src/topp/CMakeFiles/FeatureFinderIdentification.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureFinderIdentification.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureFinderIdentification.dir/build.make src/topp/CMakeFiles/FeatureFinderIdentification.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/topp/CMakeFiles/FeatureFinderIdentification.dir/FeatureFinderIdentification.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/FeatureFinderIdentification.dir/FeatureFinderIdentification.cpp.o -MF CMakeFiles/FeatureFinderIdentification.dir/FeatureFinderIdentification.cpp.o.d -o CMakeFiles/FeatureFinderIdentification.dir/FeatureFinderIdentification.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderIdentification.cpp [ 80%] Linking CXX executable ../../bin/FeatureFinderIdentification cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/FeatureFinderIdentification.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/FeatureFinderIdentification.dir/FeatureFinderIdentification.cpp.o -o ../../bin/FeatureFinderIdentification ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target FeatureFinderIdentification make -f src/topp/CMakeFiles/FeatureFinderIsotopeWavelet.dir/build.make src/topp/CMakeFiles/FeatureFinderIsotopeWavelet.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureFinderIsotopeWavelet.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureFinderIsotopeWavelet.dir/build.make src/topp/CMakeFiles/FeatureFinderIsotopeWavelet.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/topp/CMakeFiles/FeatureFinderIsotopeWavelet.dir/FeatureFinderIsotopeWavelet.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/FeatureFinderIsotopeWavelet.dir/FeatureFinderIsotopeWavelet.cpp.o -MF CMakeFiles/FeatureFinderIsotopeWavelet.dir/FeatureFinderIsotopeWavelet.cpp.o.d -o CMakeFiles/FeatureFinderIsotopeWavelet.dir/FeatureFinderIsotopeWavelet.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderIsotopeWavelet.cpp [ 80%] Linking CXX executable ../../bin/FeatureFinderIsotopeWavelet cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/FeatureFinderIsotopeWavelet.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/FeatureFinderIsotopeWavelet.dir/FeatureFinderIsotopeWavelet.cpp.o -o ../../bin/FeatureFinderIsotopeWavelet ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target FeatureFinderIsotopeWavelet make -f src/topp/CMakeFiles/FeatureFinderMetabo.dir/build.make src/topp/CMakeFiles/FeatureFinderMetabo.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureFinderMetabo.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureFinderMetabo.dir/build.make src/topp/CMakeFiles/FeatureFinderMetabo.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/topp/CMakeFiles/FeatureFinderMetabo.dir/FeatureFinderMetabo.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/FeatureFinderMetabo.dir/FeatureFinderMetabo.cpp.o -MF CMakeFiles/FeatureFinderMetabo.dir/FeatureFinderMetabo.cpp.o.d -o CMakeFiles/FeatureFinderMetabo.dir/FeatureFinderMetabo.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderMetabo.cpp [ 80%] Linking CXX executable ../../bin/FeatureFinderMetabo cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/FeatureFinderMetabo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/FeatureFinderMetabo.dir/FeatureFinderMetabo.cpp.o -o ../../bin/FeatureFinderMetabo ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target FeatureFinderMetabo make -f src/topp/CMakeFiles/FeatureFinderMRM.dir/build.make src/topp/CMakeFiles/FeatureFinderMRM.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureFinderMRM.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureFinderMRM.dir/build.make src/topp/CMakeFiles/FeatureFinderMRM.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/topp/CMakeFiles/FeatureFinderMRM.dir/FeatureFinderMRM.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/FeatureFinderMRM.dir/FeatureFinderMRM.cpp.o -MF CMakeFiles/FeatureFinderMRM.dir/FeatureFinderMRM.cpp.o.d -o CMakeFiles/FeatureFinderMRM.dir/FeatureFinderMRM.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderMRM.cpp [ 80%] Linking CXX executable ../../bin/FeatureFinderMRM cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/FeatureFinderMRM.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/FeatureFinderMRM.dir/FeatureFinderMRM.cpp.o -o ../../bin/FeatureFinderMRM ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target FeatureFinderMRM make -f src/topp/CMakeFiles/FeatureFinderMultiplex.dir/build.make src/topp/CMakeFiles/FeatureFinderMultiplex.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureFinderMultiplex.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureFinderMultiplex.dir/build.make src/topp/CMakeFiles/FeatureFinderMultiplex.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/topp/CMakeFiles/FeatureFinderMultiplex.dir/FeatureFinderMultiplex.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/FeatureFinderMultiplex.dir/FeatureFinderMultiplex.cpp.o -MF CMakeFiles/FeatureFinderMultiplex.dir/FeatureFinderMultiplex.cpp.o.d -o CMakeFiles/FeatureFinderMultiplex.dir/FeatureFinderMultiplex.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderMultiplex.cpp [ 80%] Linking CXX executable ../../bin/FeatureFinderMultiplex cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/FeatureFinderMultiplex.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/FeatureFinderMultiplex.dir/FeatureFinderMultiplex.cpp.o -o ../../bin/FeatureFinderMultiplex ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target FeatureFinderMultiplex make -f src/topp/CMakeFiles/FeatureLinkerLabeled.dir/build.make src/topp/CMakeFiles/FeatureLinkerLabeled.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureLinkerLabeled.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureLinkerLabeled.dir/build.make src/topp/CMakeFiles/FeatureLinkerLabeled.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/topp/CMakeFiles/FeatureLinkerLabeled.dir/FeatureLinkerLabeled.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/FeatureLinkerLabeled.dir/FeatureLinkerLabeled.cpp.o -MF CMakeFiles/FeatureLinkerLabeled.dir/FeatureLinkerLabeled.cpp.o.d -o CMakeFiles/FeatureLinkerLabeled.dir/FeatureLinkerLabeled.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureLinkerLabeled.cpp [ 80%] Linking CXX executable ../../bin/FeatureLinkerLabeled cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/FeatureLinkerLabeled.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/FeatureLinkerLabeled.dir/FeatureLinkerLabeled.cpp.o -o ../../bin/FeatureLinkerLabeled ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target FeatureLinkerLabeled make -f src/topp/CMakeFiles/FeatureLinkerUnlabeled.dir/build.make src/topp/CMakeFiles/FeatureLinkerUnlabeled.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureLinkerUnlabeled.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureLinkerUnlabeled.dir/build.make src/topp/CMakeFiles/FeatureLinkerUnlabeled.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/topp/CMakeFiles/FeatureLinkerUnlabeled.dir/FeatureLinkerUnlabeled.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/FeatureLinkerUnlabeled.dir/FeatureLinkerUnlabeled.cpp.o -MF CMakeFiles/FeatureLinkerUnlabeled.dir/FeatureLinkerUnlabeled.cpp.o.d -o CMakeFiles/FeatureLinkerUnlabeled.dir/FeatureLinkerUnlabeled.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureLinkerUnlabeled.cpp [ 80%] Linking CXX executable ../../bin/FeatureLinkerUnlabeled cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/FeatureLinkerUnlabeled.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/FeatureLinkerUnlabeled.dir/FeatureLinkerUnlabeled.cpp.o -o ../../bin/FeatureLinkerUnlabeled ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target FeatureLinkerUnlabeled make -f src/topp/CMakeFiles/FeatureLinkerUnlabeledKD.dir/build.make src/topp/CMakeFiles/FeatureLinkerUnlabeledKD.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureLinkerUnlabeledKD.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureLinkerUnlabeledKD.dir/build.make src/topp/CMakeFiles/FeatureLinkerUnlabeledKD.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/topp/CMakeFiles/FeatureLinkerUnlabeledKD.dir/FeatureLinkerUnlabeledKD.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/FeatureLinkerUnlabeledKD.dir/FeatureLinkerUnlabeledKD.cpp.o -MF CMakeFiles/FeatureLinkerUnlabeledKD.dir/FeatureLinkerUnlabeledKD.cpp.o.d -o CMakeFiles/FeatureLinkerUnlabeledKD.dir/FeatureLinkerUnlabeledKD.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureLinkerUnlabeledKD.cpp [ 80%] Linking CXX executable ../../bin/FeatureLinkerUnlabeledKD cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/FeatureLinkerUnlabeledKD.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/FeatureLinkerUnlabeledKD.dir/FeatureLinkerUnlabeledKD.cpp.o -o ../../bin/FeatureLinkerUnlabeledKD ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target FeatureLinkerUnlabeledKD make -f src/topp/CMakeFiles/FeatureLinkerUnlabeledQT.dir/build.make src/topp/CMakeFiles/FeatureLinkerUnlabeledQT.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureLinkerUnlabeledQT.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureLinkerUnlabeledQT.dir/build.make src/topp/CMakeFiles/FeatureLinkerUnlabeledQT.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Building CXX object src/topp/CMakeFiles/FeatureLinkerUnlabeledQT.dir/FeatureLinkerUnlabeledQT.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/FeatureLinkerUnlabeledQT.dir/FeatureLinkerUnlabeledQT.cpp.o -MF CMakeFiles/FeatureLinkerUnlabeledQT.dir/FeatureLinkerUnlabeledQT.cpp.o.d -o CMakeFiles/FeatureLinkerUnlabeledQT.dir/FeatureLinkerUnlabeledQT.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureLinkerUnlabeledQT.cpp [ 81%] Linking CXX executable ../../bin/FeatureLinkerUnlabeledQT cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/FeatureLinkerUnlabeledQT.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/FeatureLinkerUnlabeledQT.dir/FeatureLinkerUnlabeledQT.cpp.o -o ../../bin/FeatureLinkerUnlabeledQT ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 81%] Built target FeatureLinkerUnlabeledQT make -f src/topp/CMakeFiles/FidoAdapter.dir/build.make src/topp/CMakeFiles/FidoAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FidoAdapter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FidoAdapter.dir/build.make src/topp/CMakeFiles/FidoAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 81%] Building CXX object src/topp/CMakeFiles/FidoAdapter.dir/FidoAdapter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/FidoAdapter.dir/FidoAdapter.cpp.o -MF CMakeFiles/FidoAdapter.dir/FidoAdapter.cpp.o.d -o CMakeFiles/FidoAdapter.dir/FidoAdapter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FidoAdapter.cpp [ 81%] Linking CXX executable ../../bin/FidoAdapter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/FidoAdapter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/FidoAdapter.dir/FidoAdapter.cpp.o -o ../../bin/FidoAdapter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so 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'/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 81%] Built target FidoAdapter make -f src/topp/CMakeFiles/FileConverter.dir/build.make src/topp/CMakeFiles/FileConverter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FileConverter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FileConverter.dir/build.make src/topp/CMakeFiles/FileConverter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 81%] Building CXX object src/topp/CMakeFiles/FileConverter.dir/FileConverter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/FileConverter.dir/FileConverter.cpp.o -MF CMakeFiles/FileConverter.dir/FileConverter.cpp.o.d -o CMakeFiles/FileConverter.dir/FileConverter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FileConverter.cpp [ 81%] Linking CXX executable ../../bin/FileConverter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/FileConverter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/FileConverter.dir/FileConverter.cpp.o -o ../../bin/FileConverter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 81%] Built target FileConverter make -f src/topp/CMakeFiles/FileFilter.dir/build.make src/topp/CMakeFiles/FileFilter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FileFilter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FileFilter.dir/build.make src/topp/CMakeFiles/FileFilter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 81%] Building CXX object src/topp/CMakeFiles/FileFilter.dir/FileFilter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem 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-Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/FileFilter.dir/FileFilter.cpp.o -MF CMakeFiles/FileFilter.dir/FileFilter.cpp.o.d -o CMakeFiles/FileFilter.dir/FileFilter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FileFilter.cpp [ 81%] Linking CXX executable ../../bin/FileFilter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/FileFilter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/FileFilter.dir/FileFilter.cpp.o -o ../../bin/FileFilter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so 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src/topp/CMakeFiles/FileInfo.dir/FileInfo.cpp.o -MF CMakeFiles/FileInfo.dir/FileInfo.cpp.o.d -o CMakeFiles/FileInfo.dir/FileInfo.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FileInfo.cpp [ 81%] Linking CXX executable ../../bin/FileInfo cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/FileInfo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/FileInfo.dir/FileInfo.cpp.o -o ../../bin/FileInfo ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so 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/usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 81%] Built target FileMerger make -f src/topp/CMakeFiles/GenericWrapper.dir/build.make src/topp/CMakeFiles/GenericWrapper.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/GenericWrapper.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/GenericWrapper.dir/build.make src/topp/CMakeFiles/GenericWrapper.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 81%] Building CXX object src/topp/CMakeFiles/GenericWrapper.dir/GenericWrapper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/GenericWrapper.dir/GenericWrapper.cpp.o -MF CMakeFiles/GenericWrapper.dir/GenericWrapper.cpp.o.d -o CMakeFiles/GenericWrapper.dir/GenericWrapper.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/GenericWrapper.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/GenericWrapper.cpp:212:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 212 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/APPLICATIONS/TOPPBase.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/GenericWrapper.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/GenericWrapper.cpp: In member function 'virtual OpenMS::TOPPBase::ExitCodes TOPPGenericWrapper::main_(int, const char**)': /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/GenericWrapper.cpp:497:18: warning: 'void QProcess::start(const QString&, QIODevice::OpenMode)' is deprecated: Use QProcess::start(const QString &program, const QStringList &arguments,OpenMode mode = ReadWrite) instead [-Wdeprecated-declarations] 497 | builder.start(call.toQString()); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/QProcess:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/GenericWrapper.cpp:48: /usr/include/x86_64-linux-gnu/qt5/QtCore/qprocess.h:168:10: note: declared here 168 | void start(const QString &command, OpenMode mode = ReadWrite); | ^~~~~ [ 81%] Linking CXX executable ../../bin/GenericWrapper cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/GenericWrapper.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/GenericWrapper.dir/GenericWrapper.cpp.o -o ../../bin/GenericWrapper ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 81%] Built target GenericWrapper make -f src/topp/CMakeFiles/GNPSExport.dir/build.make src/topp/CMakeFiles/GNPSExport.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/GNPSExport.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/GNPSExport.dir/build.make src/topp/CMakeFiles/GNPSExport.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Building CXX object src/topp/CMakeFiles/GNPSExport.dir/GNPSExport.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/GNPSExport.dir/GNPSExport.cpp.o -MF CMakeFiles/GNPSExport.dir/GNPSExport.cpp.o.d -o CMakeFiles/GNPSExport.dir/GNPSExport.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/GNPSExport.cpp [ 82%] Linking CXX executable ../../bin/GNPSExport cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/GNPSExport.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/GNPSExport.dir/GNPSExport.cpp.o -o ../../bin/GNPSExport ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target GNPSExport make -f src/topp/CMakeFiles/HighResPrecursorMassCorrector.dir/build.make src/topp/CMakeFiles/HighResPrecursorMassCorrector.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/HighResPrecursorMassCorrector.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/HighResPrecursorMassCorrector.dir/build.make src/topp/CMakeFiles/HighResPrecursorMassCorrector.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Building CXX object src/topp/CMakeFiles/HighResPrecursorMassCorrector.dir/HighResPrecursorMassCorrector.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/HighResPrecursorMassCorrector.dir/HighResPrecursorMassCorrector.cpp.o -MF CMakeFiles/HighResPrecursorMassCorrector.dir/HighResPrecursorMassCorrector.cpp.o.d -o CMakeFiles/HighResPrecursorMassCorrector.dir/HighResPrecursorMassCorrector.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/HighResPrecursorMassCorrector.cpp [ 82%] Linking CXX executable ../../bin/HighResPrecursorMassCorrector cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/HighResPrecursorMassCorrector.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/HighResPrecursorMassCorrector.dir/HighResPrecursorMassCorrector.cpp.o -o ../../bin/HighResPrecursorMassCorrector ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory 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IDConflictResolver make -f src/topp/CMakeFiles/IDFileConverter.dir/build.make src/topp/CMakeFiles/IDFileConverter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDFileConverter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IDFileConverter.dir/build.make src/topp/CMakeFiles/IDFileConverter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Building CXX object src/topp/CMakeFiles/IDFileConverter.dir/IDFileConverter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem 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IDFileConverter make -f src/topp/CMakeFiles/IDFilter.dir/build.make src/topp/CMakeFiles/IDFilter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDFilter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IDFilter.dir/build.make src/topp/CMakeFiles/IDFilter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 83%] 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-Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/IDFilter.dir/IDFilter.cpp.o -MF CMakeFiles/IDFilter.dir/IDFilter.cpp.o.d -o CMakeFiles/IDFilter.dir/IDFilter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDFilter.cpp [ 83%] Linking CXX executable ../../bin/IDFilter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/IDFilter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/IDFilter.dir/IDFilter.cpp.o -o ../../bin/IDFilter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 83%] Built target IDFilter make -f src/topp/CMakeFiles/IDMapper.dir/build.make src/topp/CMakeFiles/IDMapper.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDMapper.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IDMapper.dir/build.make src/topp/CMakeFiles/IDMapper.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 83%] Building CXX object src/topp/CMakeFiles/IDMapper.dir/IDMapper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/IDMapper.dir/IDMapper.cpp.o -MF CMakeFiles/IDMapper.dir/IDMapper.cpp.o.d -o CMakeFiles/IDMapper.dir/IDMapper.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDMapper.cpp [ 83%] Linking CXX executable ../../bin/IDMapper cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/IDMapper.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/IDMapper.dir/IDMapper.cpp.o -o ../../bin/IDMapper ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 83%] Built target IDMapper make -f src/topp/CMakeFiles/IDMerger.dir/build.make src/topp/CMakeFiles/IDMerger.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDMerger.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IDMerger.dir/build.make src/topp/CMakeFiles/IDMerger.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 83%] Building CXX object src/topp/CMakeFiles/IDMerger.dir/IDMerger.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/IDMerger.dir/IDMerger.cpp.o -MF CMakeFiles/IDMerger.dir/IDMerger.cpp.o.d -o CMakeFiles/IDMerger.dir/IDMerger.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDMerger.cpp [ 83%] Linking CXX executable ../../bin/IDMerger cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/IDMerger.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/IDMerger.dir/IDMerger.cpp.o -o ../../bin/IDMerger ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 83%] Built target IDMerger make -f src/topp/CMakeFiles/IDPosteriorErrorProbability.dir/build.make src/topp/CMakeFiles/IDPosteriorErrorProbability.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDPosteriorErrorProbability.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IDPosteriorErrorProbability.dir/build.make src/topp/CMakeFiles/IDPosteriorErrorProbability.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 83%] Building CXX object src/topp/CMakeFiles/IDPosteriorErrorProbability.dir/IDPosteriorErrorProbability.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/IDPosteriorErrorProbability.dir/IDPosteriorErrorProbability.cpp.o -MF CMakeFiles/IDPosteriorErrorProbability.dir/IDPosteriorErrorProbability.cpp.o.d -o CMakeFiles/IDPosteriorErrorProbability.dir/IDPosteriorErrorProbability.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDPosteriorErrorProbability.cpp [ 83%] Linking CXX executable ../../bin/IDPosteriorErrorProbability cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/IDPosteriorErrorProbability.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/IDPosteriorErrorProbability.dir/IDPosteriorErrorProbability.cpp.o -o ../../bin/IDPosteriorErrorProbability ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 83%] Built target IDPosteriorErrorProbability make -f src/topp/CMakeFiles/IDRipper.dir/build.make src/topp/CMakeFiles/IDRipper.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDRipper.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IDRipper.dir/build.make src/topp/CMakeFiles/IDRipper.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 83%] Building CXX object src/topp/CMakeFiles/IDRipper.dir/IDRipper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/IDRipper.dir/IDRipper.cpp.o -MF CMakeFiles/IDRipper.dir/IDRipper.cpp.o.d -o CMakeFiles/IDRipper.dir/IDRipper.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDRipper.cpp [ 85%] Linking CXX executable ../../bin/IDRipper cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/IDRipper.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/IDRipper.dir/IDRipper.cpp.o -o ../../bin/IDRipper ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Built target IDRipper make -f src/topp/CMakeFiles/IDRTCalibration.dir/build.make src/topp/CMakeFiles/IDRTCalibration.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDRTCalibration.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IDRTCalibration.dir/build.make src/topp/CMakeFiles/IDRTCalibration.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Building CXX object src/topp/CMakeFiles/IDRTCalibration.dir/IDRTCalibration.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/IDRTCalibration.dir/IDRTCalibration.cpp.o -MF CMakeFiles/IDRTCalibration.dir/IDRTCalibration.cpp.o.d -o CMakeFiles/IDRTCalibration.dir/IDRTCalibration.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDRTCalibration.cpp [ 85%] Linking CXX executable ../../bin/IDRTCalibration cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/IDRTCalibration.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/IDRTCalibration.dir/IDRTCalibration.cpp.o -o ../../bin/IDRTCalibration ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Built target IDRTCalibration make -f src/topp/CMakeFiles/InclusionExclusionListCreator.dir/build.make src/topp/CMakeFiles/InclusionExclusionListCreator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/InclusionExclusionListCreator.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/InclusionExclusionListCreator.dir/build.make src/topp/CMakeFiles/InclusionExclusionListCreator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Building CXX object src/topp/CMakeFiles/InclusionExclusionListCreator.dir/InclusionExclusionListCreator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/InclusionExclusionListCreator.dir/InclusionExclusionListCreator.cpp.o -MF CMakeFiles/InclusionExclusionListCreator.dir/InclusionExclusionListCreator.cpp.o.d -o CMakeFiles/InclusionExclusionListCreator.dir/InclusionExclusionListCreator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/InclusionExclusionListCreator.cpp [ 85%] Linking CXX executable ../../bin/InclusionExclusionListCreator cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/InclusionExclusionListCreator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/InclusionExclusionListCreator.dir/InclusionExclusionListCreator.cpp.o -o ../../bin/InclusionExclusionListCreator ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Built target InclusionExclusionListCreator make -f src/topp/CMakeFiles/InspectAdapter.dir/build.make src/topp/CMakeFiles/InspectAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/InspectAdapter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/InspectAdapter.dir/build.make src/topp/CMakeFiles/InspectAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Building CXX object src/topp/CMakeFiles/InspectAdapter.dir/InspectAdapter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/InspectAdapter.dir/InspectAdapter.cpp.o -MF CMakeFiles/InspectAdapter.dir/InspectAdapter.cpp.o.d -o CMakeFiles/InspectAdapter.dir/InspectAdapter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/InspectAdapter.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/InspectAdapter.cpp: In member function 'virtual OpenMS::TOPPBase::ExitCodes TOPPInspectAdapter::main_(OpenMS::Int, const char**)': /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/InspectAdapter.cpp:758:132: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 758 | Int status = QProcess::execute((inspect_directory + "inspect").toQString(), QStringList(call.toQString().split(" ", QString::SkipEmptyParts))); // does automatic escaping etc... | ^~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qdatetime.h:44, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QDate:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DateTime.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/DataProcessing.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/APPLICATIONS/TOPPBase.h:44, from /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/InspectAdapter.cpp:35: /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:602:9: note: declared here 602 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/InspectAdapter.cpp:758:132: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 758 | Int status = QProcess::execute((inspect_directory + "inspect").toQString(), QStringList(call.toQString().split(" ", QString::SkipEmptyParts))); // does automatic escaping etc... | ^~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:602:9: note: declared here 602 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/InspectAdapter.cpp:758:117: warning: 'QStringList QString::split(const QString&, SplitBehavior, Qt::CaseSensitivity) const' is deprecated: Use split(const QString &sep, Qt::SplitBehavior ...) variant instead [-Wdeprecated-declarations] 758 | Int status = QProcess::execute((inspect_directory + "inspect").toQString(), QStringList(call.toQString().split(" ", QString::SkipEmptyParts))); // does automatic escaping etc... | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:606:17: note: declared here 606 | QStringList split(const QString &sep, SplitBehavior behavior, | ^~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/InspectAdapter.cpp:807:132: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 807 | Int status = QProcess::execute((inspect_directory + "inspect").toQString(), QStringList(call.toQString().split(" ", QString::SkipEmptyParts))); // does automatic escaping etc... | ^~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:602:9: note: declared here 602 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/InspectAdapter.cpp:807:132: warning: 'QString::SkipEmptyParts' is deprecated [-Wdeprecated-declarations] 807 | Int status = QProcess::execute((inspect_directory + "inspect").toQString(), QStringList(call.toQString().split(" ", QString::SkipEmptyParts))); // does automatic escaping etc... | ^~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:602:9: note: declared here 602 | SkipEmptyParts Q_DECL_ENUMERATOR_DEPRECATED | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/InspectAdapter.cpp:807:117: warning: 'QStringList QString::split(const QString&, SplitBehavior, Qt::CaseSensitivity) const' is deprecated: Use split(const QString &sep, Qt::SplitBehavior ...) variant instead [-Wdeprecated-declarations] 807 | Int status = QProcess::execute((inspect_directory + "inspect").toQString(), QStringList(call.toQString().split(" ", QString::SkipEmptyParts))); // does automatic escaping etc... | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:606:17: note: declared here 606 | QStringList split(const QString &sep, SplitBehavior behavior, | ^~~~~ [ 85%] Linking CXX executable ../../bin/InspectAdapter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/InspectAdapter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/InspectAdapter.dir/InspectAdapter.cpp.o -o ../../bin/InspectAdapter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Built target InspectAdapter make -f src/topp/CMakeFiles/InternalCalibration.dir/build.make src/topp/CMakeFiles/InternalCalibration.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/InternalCalibration.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/InternalCalibration.dir/build.make src/topp/CMakeFiles/InternalCalibration.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Building CXX object src/topp/CMakeFiles/InternalCalibration.dir/InternalCalibration.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/InternalCalibration.dir/InternalCalibration.cpp.o -MF CMakeFiles/InternalCalibration.dir/InternalCalibration.cpp.o.d -o CMakeFiles/InternalCalibration.dir/InternalCalibration.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/InternalCalibration.cpp [ 85%] Linking CXX executable ../../bin/InternalCalibration cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/InternalCalibration.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/InternalCalibration.dir/InternalCalibration.cpp.o -o ../../bin/InternalCalibration ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Built target InternalCalibration make -f src/topp/CMakeFiles/IsobaricAnalyzer.dir/build.make src/topp/CMakeFiles/IsobaricAnalyzer.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IsobaricAnalyzer.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IsobaricAnalyzer.dir/build.make src/topp/CMakeFiles/IsobaricAnalyzer.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Building CXX object src/topp/CMakeFiles/IsobaricAnalyzer.dir/IsobaricAnalyzer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/IsobaricAnalyzer.dir/IsobaricAnalyzer.cpp.o -MF CMakeFiles/IsobaricAnalyzer.dir/IsobaricAnalyzer.cpp.o.d -o CMakeFiles/IsobaricAnalyzer.dir/IsobaricAnalyzer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IsobaricAnalyzer.cpp [ 85%] Linking CXX executable ../../bin/IsobaricAnalyzer cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/IsobaricAnalyzer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/IsobaricAnalyzer.dir/IsobaricAnalyzer.cpp.o -o ../../bin/IsobaricAnalyzer ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Built target IsobaricAnalyzer make -f src/topp/CMakeFiles/LuciphorAdapter.dir/build.make src/topp/CMakeFiles/LuciphorAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/LuciphorAdapter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/LuciphorAdapter.dir/build.make src/topp/CMakeFiles/LuciphorAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Building CXX object src/topp/CMakeFiles/LuciphorAdapter.dir/LuciphorAdapter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/LuciphorAdapter.dir/LuciphorAdapter.cpp.o -MF CMakeFiles/LuciphorAdapter.dir/LuciphorAdapter.cpp.o.d -o CMakeFiles/LuciphorAdapter.dir/LuciphorAdapter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/LuciphorAdapter.cpp [ 85%] Linking CXX executable ../../bin/LuciphorAdapter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/LuciphorAdapter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/LuciphorAdapter.dir/LuciphorAdapter.cpp.o -o ../../bin/LuciphorAdapter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Built target LuciphorAdapter make -f src/topp/CMakeFiles/MapAlignerIdentification.dir/build.make src/topp/CMakeFiles/MapAlignerIdentification.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapAlignerIdentification.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MapAlignerIdentification.dir/build.make src/topp/CMakeFiles/MapAlignerIdentification.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Building CXX object src/topp/CMakeFiles/MapAlignerIdentification.dir/MapAlignerIdentification.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/MapAlignerIdentification.dir/MapAlignerIdentification.cpp.o -MF CMakeFiles/MapAlignerIdentification.dir/MapAlignerIdentification.cpp.o.d -o CMakeFiles/MapAlignerIdentification.dir/MapAlignerIdentification.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapAlignerIdentification.cpp [ 85%] Linking CXX executable ../../bin/MapAlignerIdentification cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/MapAlignerIdentification.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/MapAlignerIdentification.dir/MapAlignerIdentification.cpp.o -o ../../bin/MapAlignerIdentification ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Built target MapAlignerIdentification make -f src/topp/CMakeFiles/MapAlignerPoseClustering.dir/build.make src/topp/CMakeFiles/MapAlignerPoseClustering.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapAlignerPoseClustering.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MapAlignerPoseClustering.dir/build.make src/topp/CMakeFiles/MapAlignerPoseClustering.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Building CXX object src/topp/CMakeFiles/MapAlignerPoseClustering.dir/MapAlignerPoseClustering.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/MapAlignerPoseClustering.dir/MapAlignerPoseClustering.cpp.o -MF CMakeFiles/MapAlignerPoseClustering.dir/MapAlignerPoseClustering.cpp.o.d -o CMakeFiles/MapAlignerPoseClustering.dir/MapAlignerPoseClustering.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapAlignerPoseClustering.cpp [ 85%] Linking CXX executable ../../bin/MapAlignerPoseClustering cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/MapAlignerPoseClustering.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/MapAlignerPoseClustering.dir/MapAlignerPoseClustering.cpp.o -o ../../bin/MapAlignerPoseClustering ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Built target MapAlignerPoseClustering make -f src/topp/CMakeFiles/MapAlignerSpectrum.dir/build.make src/topp/CMakeFiles/MapAlignerSpectrum.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapAlignerSpectrum.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MapAlignerSpectrum.dir/build.make src/topp/CMakeFiles/MapAlignerSpectrum.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Building CXX object src/topp/CMakeFiles/MapAlignerSpectrum.dir/MapAlignerSpectrum.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/MapAlignerSpectrum.dir/MapAlignerSpectrum.cpp.o -MF CMakeFiles/MapAlignerSpectrum.dir/MapAlignerSpectrum.cpp.o.d -o CMakeFiles/MapAlignerSpectrum.dir/MapAlignerSpectrum.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapAlignerSpectrum.cpp [ 85%] Linking CXX executable ../../bin/MapAlignerSpectrum cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/MapAlignerSpectrum.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/MapAlignerSpectrum.dir/MapAlignerSpectrum.cpp.o -o ../../bin/MapAlignerSpectrum ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Built target MapAlignerSpectrum make -f src/topp/CMakeFiles/MapAlignerTreeGuided.dir/build.make src/topp/CMakeFiles/MapAlignerTreeGuided.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapAlignerTreeGuided.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MapAlignerTreeGuided.dir/build.make src/topp/CMakeFiles/MapAlignerTreeGuided.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Building CXX object src/topp/CMakeFiles/MapAlignerTreeGuided.dir/MapAlignerTreeGuided.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/MapAlignerTreeGuided.dir/MapAlignerTreeGuided.cpp.o -MF CMakeFiles/MapAlignerTreeGuided.dir/MapAlignerTreeGuided.cpp.o.d -o CMakeFiles/MapAlignerTreeGuided.dir/MapAlignerTreeGuided.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapAlignerTreeGuided.cpp [ 85%] Linking CXX executable ../../bin/MapAlignerTreeGuided cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/MapAlignerTreeGuided.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/MapAlignerTreeGuided.dir/MapAlignerTreeGuided.cpp.o -o ../../bin/MapAlignerTreeGuided ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Built target MapAlignerTreeGuided make -f src/topp/CMakeFiles/MapNormalizer.dir/build.make src/topp/CMakeFiles/MapNormalizer.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapNormalizer.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MapNormalizer.dir/build.make src/topp/CMakeFiles/MapNormalizer.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Building CXX object src/topp/CMakeFiles/MapNormalizer.dir/MapNormalizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/MapNormalizer.dir/MapNormalizer.cpp.o -MF CMakeFiles/MapNormalizer.dir/MapNormalizer.cpp.o.d -o CMakeFiles/MapNormalizer.dir/MapNormalizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapNormalizer.cpp [ 85%] Linking CXX executable ../../bin/MapNormalizer cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/MapNormalizer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/MapNormalizer.dir/MapNormalizer.cpp.o -o ../../bin/MapNormalizer ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Built target MapNormalizer make -f src/topp/CMakeFiles/MapRTTransformer.dir/build.make src/topp/CMakeFiles/MapRTTransformer.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapRTTransformer.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MapRTTransformer.dir/build.make src/topp/CMakeFiles/MapRTTransformer.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Building CXX object src/topp/CMakeFiles/MapRTTransformer.dir/MapRTTransformer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/MapRTTransformer.dir/MapRTTransformer.cpp.o -MF CMakeFiles/MapRTTransformer.dir/MapRTTransformer.cpp.o.d -o CMakeFiles/MapRTTransformer.dir/MapRTTransformer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapRTTransformer.cpp [ 86%] Linking CXX executable ../../bin/MapRTTransformer cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/MapRTTransformer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/MapRTTransformer.dir/MapRTTransformer.cpp.o -o ../../bin/MapRTTransformer ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Built target MapRTTransformer make -f src/topp/CMakeFiles/MapStatistics.dir/build.make src/topp/CMakeFiles/MapStatistics.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapStatistics.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MapStatistics.dir/build.make src/topp/CMakeFiles/MapStatistics.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Building CXX object src/topp/CMakeFiles/MapStatistics.dir/MapStatistics.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/MapStatistics.dir/MapStatistics.cpp.o -MF CMakeFiles/MapStatistics.dir/MapStatistics.cpp.o.d -o CMakeFiles/MapStatistics.dir/MapStatistics.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapStatistics.cpp [ 86%] Linking CXX executable ../../bin/MapStatistics cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/MapStatistics.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/MapStatistics.dir/MapStatistics.cpp.o -o ../../bin/MapStatistics ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Built target MapStatistics make -f src/topp/CMakeFiles/MaRaClusterAdapter.dir/build.make src/topp/CMakeFiles/MaRaClusterAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MaRaClusterAdapter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MaRaClusterAdapter.dir/build.make src/topp/CMakeFiles/MaRaClusterAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Building CXX object src/topp/CMakeFiles/MaRaClusterAdapter.dir/MaRaClusterAdapter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/MaRaClusterAdapter.dir/MaRaClusterAdapter.cpp.o -MF CMakeFiles/MaRaClusterAdapter.dir/MaRaClusterAdapter.cpp.o.d -o CMakeFiles/MaRaClusterAdapter.dir/MaRaClusterAdapter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MaRaClusterAdapter.cpp [ 86%] Linking CXX executable ../../bin/MaRaClusterAdapter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/MaRaClusterAdapter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/MaRaClusterAdapter.dir/MaRaClusterAdapter.cpp.o -o ../../bin/MaRaClusterAdapter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Built target MaRaClusterAdapter make -f src/topp/CMakeFiles/MascotAdapter.dir/build.make src/topp/CMakeFiles/MascotAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MascotAdapter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MascotAdapter.dir/build.make src/topp/CMakeFiles/MascotAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Building CXX object src/topp/CMakeFiles/MascotAdapter.dir/MascotAdapter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/MascotAdapter.dir/MascotAdapter.cpp.o -MF CMakeFiles/MascotAdapter.dir/MascotAdapter.cpp.o.d -o CMakeFiles/MascotAdapter.dir/MascotAdapter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MascotAdapter.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MascotAdapter.cpp: In member function 'virtual OpenMS::TOPPBase::ExitCodes TOPPMascotAdapter::main_(int, const char**)': /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MascotAdapter.cpp:576:28: warning: 'static int QProcess::execute(const QString&)' is deprecated: Use QProcess::execute(const QString &program, const QStringList &arguments) instead [-Wdeprecated-declarations] 576 | status = qp.execute(call.toQString()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/QProcess:1, from /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MascotAdapter.cpp:53: /usr/include/x86_64-linux-gnu/qt5/QtCore/qprocess.h:265:16: note: declared here 265 | static int execute(const QString &command); | ^~~~~~~ [ 86%] Linking CXX executable ../../bin/MascotAdapter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/MascotAdapter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/MascotAdapter.dir/MascotAdapter.cpp.o -o ../../bin/MascotAdapter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Built target MascotAdapter make -f src/topp/CMakeFiles/MascotAdapterOnline.dir/build.make src/topp/CMakeFiles/MascotAdapterOnline.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MascotAdapterOnline.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MascotAdapterOnline.dir/build.make src/topp/CMakeFiles/MascotAdapterOnline.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Building CXX object src/topp/CMakeFiles/MascotAdapterOnline.dir/MascotAdapterOnline.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/MascotAdapterOnline.dir/MascotAdapterOnline.cpp.o -MF CMakeFiles/MascotAdapterOnline.dir/MascotAdapterOnline.cpp.o.d -o CMakeFiles/MascotAdapterOnline.dir/MascotAdapterOnline.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MascotAdapterOnline.cpp [ 86%] Linking CXX executable ../../bin/MascotAdapterOnline cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/MascotAdapterOnline.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/MascotAdapterOnline.dir/MascotAdapterOnline.cpp.o -o ../../bin/MascotAdapterOnline ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Built target MascotAdapterOnline make -f src/topp/CMakeFiles/MassTraceExtractor.dir/build.make src/topp/CMakeFiles/MassTraceExtractor.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MassTraceExtractor.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MassTraceExtractor.dir/build.make src/topp/CMakeFiles/MassTraceExtractor.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Building CXX object src/topp/CMakeFiles/MassTraceExtractor.dir/MassTraceExtractor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/MassTraceExtractor.dir/MassTraceExtractor.cpp.o -MF CMakeFiles/MassTraceExtractor.dir/MassTraceExtractor.cpp.o.d -o CMakeFiles/MassTraceExtractor.dir/MassTraceExtractor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MassTraceExtractor.cpp [ 86%] Linking CXX executable ../../bin/MassTraceExtractor cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/MassTraceExtractor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/MassTraceExtractor.dir/MassTraceExtractor.cpp.o -o ../../bin/MassTraceExtractor ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Built target MassTraceExtractor make -f src/topp/CMakeFiles/MRMMapper.dir/build.make src/topp/CMakeFiles/MRMMapper.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MRMMapper.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MRMMapper.dir/build.make src/topp/CMakeFiles/MRMMapper.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 87%] Building CXX object src/topp/CMakeFiles/MRMMapper.dir/MRMMapper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/MRMMapper.dir/MRMMapper.cpp.o -MF CMakeFiles/MRMMapper.dir/MRMMapper.cpp.o.d -o CMakeFiles/MRMMapper.dir/MRMMapper.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MRMMapper.cpp [ 87%] Linking CXX executable ../../bin/MRMMapper cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/MRMMapper.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/MRMMapper.dir/MRMMapper.cpp.o -o ../../bin/MRMMapper ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 87%] Built target MRMMapper make -f src/topp/CMakeFiles/MSGFPlusAdapter.dir/build.make src/topp/CMakeFiles/MSGFPlusAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MSGFPlusAdapter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MSGFPlusAdapter.dir/build.make src/topp/CMakeFiles/MSGFPlusAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 87%] Building CXX object src/topp/CMakeFiles/MSGFPlusAdapter.dir/MSGFPlusAdapter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/MSGFPlusAdapter.dir/MSGFPlusAdapter.cpp.o -MF CMakeFiles/MSGFPlusAdapter.dir/MSGFPlusAdapter.cpp.o.d -o CMakeFiles/MSGFPlusAdapter.dir/MSGFPlusAdapter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MSGFPlusAdapter.cpp [ 87%] Linking CXX executable ../../bin/MSGFPlusAdapter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/MSGFPlusAdapter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/MSGFPlusAdapter.dir/MSGFPlusAdapter.cpp.o -o ../../bin/MSGFPlusAdapter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 87%] Built target MSGFPlusAdapter make -f src/topp/CMakeFiles/MyriMatchAdapter.dir/build.make src/topp/CMakeFiles/MyriMatchAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MyriMatchAdapter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MyriMatchAdapter.dir/build.make src/topp/CMakeFiles/MyriMatchAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 87%] Building CXX object src/topp/CMakeFiles/MyriMatchAdapter.dir/MyriMatchAdapter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/MyriMatchAdapter.dir/MyriMatchAdapter.cpp.o -MF CMakeFiles/MyriMatchAdapter.dir/MyriMatchAdapter.cpp.o.d -o CMakeFiles/MyriMatchAdapter.dir/MyriMatchAdapter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MyriMatchAdapter.cpp [ 87%] Linking CXX executable ../../bin/MyriMatchAdapter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/MyriMatchAdapter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/MyriMatchAdapter.dir/MyriMatchAdapter.cpp.o -o ../../bin/MyriMatchAdapter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 87%] Built target MyriMatchAdapter make -f src/topp/CMakeFiles/MzTabExporter.dir/build.make src/topp/CMakeFiles/MzTabExporter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MzTabExporter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MzTabExporter.dir/build.make src/topp/CMakeFiles/MzTabExporter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 87%] Building CXX object src/topp/CMakeFiles/MzTabExporter.dir/MzTabExporter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/MzTabExporter.dir/MzTabExporter.cpp.o -MF CMakeFiles/MzTabExporter.dir/MzTabExporter.cpp.o.d -o CMakeFiles/MzTabExporter.dir/MzTabExporter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MzTabExporter.cpp [ 87%] Linking CXX executable ../../bin/MzTabExporter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/MzTabExporter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/MzTabExporter.dir/MzTabExporter.cpp.o -o ../../bin/MzTabExporter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 87%] Built target MzTabExporter make -f src/topp/CMakeFiles/NoiseFilterGaussian.dir/build.make src/topp/CMakeFiles/NoiseFilterGaussian.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/NoiseFilterGaussian.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/NoiseFilterGaussian.dir/build.make src/topp/CMakeFiles/NoiseFilterGaussian.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 87%] Building CXX object src/topp/CMakeFiles/NoiseFilterGaussian.dir/NoiseFilterGaussian.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/NoiseFilterGaussian.dir/NoiseFilterGaussian.cpp.o -MF CMakeFiles/NoiseFilterGaussian.dir/NoiseFilterGaussian.cpp.o.d -o CMakeFiles/NoiseFilterGaussian.dir/NoiseFilterGaussian.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/NoiseFilterGaussian.cpp [ 88%] Linking CXX executable ../../bin/NoiseFilterGaussian cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/NoiseFilterGaussian.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/NoiseFilterGaussian.dir/NoiseFilterGaussian.cpp.o -o ../../bin/NoiseFilterGaussian ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Built target NoiseFilterGaussian make -f src/topp/CMakeFiles/NoiseFilterSGolay.dir/build.make src/topp/CMakeFiles/NoiseFilterSGolay.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/NoiseFilterSGolay.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/NoiseFilterSGolay.dir/build.make src/topp/CMakeFiles/NoiseFilterSGolay.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Building CXX object src/topp/CMakeFiles/NoiseFilterSGolay.dir/NoiseFilterSGolay.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/NoiseFilterSGolay.dir/NoiseFilterSGolay.cpp.o -MF CMakeFiles/NoiseFilterSGolay.dir/NoiseFilterSGolay.cpp.o.d -o CMakeFiles/NoiseFilterSGolay.dir/NoiseFilterSGolay.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/NoiseFilterSGolay.cpp [ 88%] Linking CXX executable ../../bin/NoiseFilterSGolay cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/NoiseFilterSGolay.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/NoiseFilterSGolay.dir/NoiseFilterSGolay.cpp.o -o ../../bin/NoiseFilterSGolay ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Built target NoiseFilterSGolay make -f src/topp/CMakeFiles/OMSSAAdapter.dir/build.make src/topp/CMakeFiles/OMSSAAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OMSSAAdapter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OMSSAAdapter.dir/build.make src/topp/CMakeFiles/OMSSAAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Building CXX object src/topp/CMakeFiles/OMSSAAdapter.dir/OMSSAAdapter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/OMSSAAdapter.dir/OMSSAAdapter.cpp.o -MF CMakeFiles/OMSSAAdapter.dir/OMSSAAdapter.cpp.o.d -o CMakeFiles/OMSSAAdapter.dir/OMSSAAdapter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OMSSAAdapter.cpp [ 88%] Linking CXX executable ../../bin/OMSSAAdapter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/OMSSAAdapter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/OMSSAAdapter.dir/OMSSAAdapter.cpp.o -o ../../bin/OMSSAAdapter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Built target OMSSAAdapter make -f src/topp/CMakeFiles/OpenPepXL.dir/build.make src/topp/CMakeFiles/OpenPepXL.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenPepXL.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenPepXL.dir/build.make src/topp/CMakeFiles/OpenPepXL.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Building CXX object src/topp/CMakeFiles/OpenPepXL.dir/OpenPepXL.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/OpenPepXL.dir/OpenPepXL.cpp.o -MF CMakeFiles/OpenPepXL.dir/OpenPepXL.cpp.o.d -o CMakeFiles/OpenPepXL.dir/OpenPepXL.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenPepXL.cpp [ 88%] Linking CXX executable ../../bin/OpenPepXL cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenPepXL.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/OpenPepXL.dir/OpenPepXL.cpp.o -o ../../bin/OpenPepXL ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Built target OpenPepXL make -f src/topp/CMakeFiles/OpenPepXLLF.dir/build.make src/topp/CMakeFiles/OpenPepXLLF.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenPepXLLF.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenPepXLLF.dir/build.make src/topp/CMakeFiles/OpenPepXLLF.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Building CXX object src/topp/CMakeFiles/OpenPepXLLF.dir/OpenPepXLLF.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/OpenPepXLLF.dir/OpenPepXLLF.cpp.o -MF CMakeFiles/OpenPepXLLF.dir/OpenPepXLLF.cpp.o.d -o CMakeFiles/OpenPepXLLF.dir/OpenPepXLLF.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenPepXLLF.cpp [ 88%] Linking CXX executable ../../bin/OpenPepXLLF cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenPepXLLF.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/OpenPepXLLF.dir/OpenPepXLLF.cpp.o -o ../../bin/OpenPepXLLF ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Built target OpenPepXLLF make -f src/topp/CMakeFiles/OpenSwathAnalyzer.dir/build.make src/topp/CMakeFiles/OpenSwathAnalyzer.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathAnalyzer.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenSwathAnalyzer.dir/build.make src/topp/CMakeFiles/OpenSwathAnalyzer.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Building CXX object src/topp/CMakeFiles/OpenSwathAnalyzer.dir/OpenSwathAnalyzer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/OpenSwathAnalyzer.dir/OpenSwathAnalyzer.cpp.o -MF CMakeFiles/OpenSwathAnalyzer.dir/OpenSwathAnalyzer.cpp.o.d -o CMakeFiles/OpenSwathAnalyzer.dir/OpenSwathAnalyzer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathAnalyzer.cpp [ 88%] Linking CXX executable ../../bin/OpenSwathAnalyzer cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenSwathAnalyzer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/OpenSwathAnalyzer.dir/OpenSwathAnalyzer.cpp.o -o ../../bin/OpenSwathAnalyzer ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Built target OpenSwathAnalyzer make -f src/topp/CMakeFiles/OpenSwathAssayGenerator.dir/build.make src/topp/CMakeFiles/OpenSwathAssayGenerator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathAssayGenerator.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenSwathAssayGenerator.dir/build.make src/topp/CMakeFiles/OpenSwathAssayGenerator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Building CXX object src/topp/CMakeFiles/OpenSwathAssayGenerator.dir/OpenSwathAssayGenerator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/OpenSwathAssayGenerator.dir/OpenSwathAssayGenerator.cpp.o -MF CMakeFiles/OpenSwathAssayGenerator.dir/OpenSwathAssayGenerator.cpp.o.d -o CMakeFiles/OpenSwathAssayGenerator.dir/OpenSwathAssayGenerator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathAssayGenerator.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /usr/include/boost/math/tools/convert_from_string.hpp:17, from /usr/include/boost/math/constants/constants.hpp:14, from /usr/include/boost/math/special_functions/gamma.hpp:24, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/MISC/MathFunctions.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMIonSeries.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/MRMAssay.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathAssayGenerator.cpp:35: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 88%] Linking CXX executable ../../bin/OpenSwathAssayGenerator cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenSwathAssayGenerator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/OpenSwathAssayGenerator.dir/OpenSwathAssayGenerator.cpp.o -o ../../bin/OpenSwathAssayGenerator ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Built target OpenSwathAssayGenerator make -f src/topp/CMakeFiles/OpenSwathChromatogramExtractor.dir/build.make src/topp/CMakeFiles/OpenSwathChromatogramExtractor.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathChromatogramExtractor.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenSwathChromatogramExtractor.dir/build.make src/topp/CMakeFiles/OpenSwathChromatogramExtractor.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Building CXX object src/topp/CMakeFiles/OpenSwathChromatogramExtractor.dir/OpenSwathChromatogramExtractor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/OpenSwathChromatogramExtractor.dir/OpenSwathChromatogramExtractor.cpp.o -MF CMakeFiles/OpenSwathChromatogramExtractor.dir/OpenSwathChromatogramExtractor.cpp.o.d -o CMakeFiles/OpenSwathChromatogramExtractor.dir/OpenSwathChromatogramExtractor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathChromatogramExtractor.cpp [ 90%] Linking CXX executable ../../bin/OpenSwathChromatogramExtractor cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenSwathChromatogramExtractor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/OpenSwathChromatogramExtractor.dir/OpenSwathChromatogramExtractor.cpp.o -o ../../bin/OpenSwathChromatogramExtractor ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Built target OpenSwathChromatogramExtractor make -f src/topp/CMakeFiles/OpenSwathConfidenceScoring.dir/build.make src/topp/CMakeFiles/OpenSwathConfidenceScoring.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathConfidenceScoring.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenSwathConfidenceScoring.dir/build.make src/topp/CMakeFiles/OpenSwathConfidenceScoring.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Building CXX object src/topp/CMakeFiles/OpenSwathConfidenceScoring.dir/OpenSwathConfidenceScoring.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/OpenSwathConfidenceScoring.dir/OpenSwathConfidenceScoring.cpp.o -MF CMakeFiles/OpenSwathConfidenceScoring.dir/OpenSwathConfidenceScoring.cpp.o.d -o CMakeFiles/OpenSwathConfidenceScoring.dir/OpenSwathConfidenceScoring.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathConfidenceScoring.cpp [ 90%] Linking CXX executable ../../bin/OpenSwathConfidenceScoring cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenSwathConfidenceScoring.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/OpenSwathConfidenceScoring.dir/OpenSwathConfidenceScoring.cpp.o -o ../../bin/OpenSwathConfidenceScoring ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Built target OpenSwathConfidenceScoring make -f src/topp/CMakeFiles/OpenSwathDecoyGenerator.dir/build.make src/topp/CMakeFiles/OpenSwathDecoyGenerator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathDecoyGenerator.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenSwathDecoyGenerator.dir/build.make src/topp/CMakeFiles/OpenSwathDecoyGenerator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Building CXX object src/topp/CMakeFiles/OpenSwathDecoyGenerator.dir/OpenSwathDecoyGenerator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/OpenSwathDecoyGenerator.dir/OpenSwathDecoyGenerator.cpp.o -MF CMakeFiles/OpenSwathDecoyGenerator.dir/OpenSwathDecoyGenerator.cpp.o.d -o CMakeFiles/OpenSwathDecoyGenerator.dir/OpenSwathDecoyGenerator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathDecoyGenerator.cpp [ 90%] Linking CXX executable ../../bin/OpenSwathDecoyGenerator cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenSwathDecoyGenerator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/OpenSwathDecoyGenerator.dir/OpenSwathDecoyGenerator.cpp.o -o ../../bin/OpenSwathDecoyGenerator ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Built target OpenSwathDecoyGenerator make -f src/topp/CMakeFiles/OpenSwathFeatureXMLToTSV.dir/build.make src/topp/CMakeFiles/OpenSwathFeatureXMLToTSV.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathFeatureXMLToTSV.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenSwathFeatureXMLToTSV.dir/build.make src/topp/CMakeFiles/OpenSwathFeatureXMLToTSV.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Building CXX object src/topp/CMakeFiles/OpenSwathFeatureXMLToTSV.dir/OpenSwathFeatureXMLToTSV.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/OpenSwathFeatureXMLToTSV.dir/OpenSwathFeatureXMLToTSV.cpp.o -MF CMakeFiles/OpenSwathFeatureXMLToTSV.dir/OpenSwathFeatureXMLToTSV.cpp.o.d -o CMakeFiles/OpenSwathFeatureXMLToTSV.dir/OpenSwathFeatureXMLToTSV.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathFeatureXMLToTSV.cpp [ 90%] Linking CXX executable ../../bin/OpenSwathFeatureXMLToTSV cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenSwathFeatureXMLToTSV.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/OpenSwathFeatureXMLToTSV.dir/OpenSwathFeatureXMLToTSV.cpp.o -o ../../bin/OpenSwathFeatureXMLToTSV ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Built target OpenSwathFeatureXMLToTSV make -f src/topp/CMakeFiles/OpenSwathRTNormalizer.dir/build.make src/topp/CMakeFiles/OpenSwathRTNormalizer.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathRTNormalizer.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenSwathRTNormalizer.dir/build.make src/topp/CMakeFiles/OpenSwathRTNormalizer.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 91%] Building CXX object src/topp/CMakeFiles/OpenSwathRTNormalizer.dir/OpenSwathRTNormalizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/OpenSwathRTNormalizer.dir/OpenSwathRTNormalizer.cpp.o -MF CMakeFiles/OpenSwathRTNormalizer.dir/OpenSwathRTNormalizer.cpp.o.d -o CMakeFiles/OpenSwathRTNormalizer.dir/OpenSwathRTNormalizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathRTNormalizer.cpp [ 91%] Linking CXX executable ../../bin/OpenSwathRTNormalizer cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenSwathRTNormalizer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/OpenSwathRTNormalizer.dir/OpenSwathRTNormalizer.cpp.o -o ../../bin/OpenSwathRTNormalizer ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 91%] Built target OpenSwathRTNormalizer make -f src/topp/CMakeFiles/PeakPickerHiRes.dir/build.make src/topp/CMakeFiles/PeakPickerHiRes.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PeakPickerHiRes.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PeakPickerHiRes.dir/build.make src/topp/CMakeFiles/PeakPickerHiRes.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 91%] Building CXX object src/topp/CMakeFiles/PeakPickerHiRes.dir/PeakPickerHiRes.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/PeakPickerHiRes.dir/PeakPickerHiRes.cpp.o -MF CMakeFiles/PeakPickerHiRes.dir/PeakPickerHiRes.cpp.o.d -o CMakeFiles/PeakPickerHiRes.dir/PeakPickerHiRes.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PeakPickerHiRes.cpp [ 92%] Linking CXX executable ../../bin/PeakPickerHiRes cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/PeakPickerHiRes.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/PeakPickerHiRes.dir/PeakPickerHiRes.cpp.o -o ../../bin/PeakPickerHiRes ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Built target PeakPickerHiRes make -f src/topp/CMakeFiles/PeakPickerWavelet.dir/build.make src/topp/CMakeFiles/PeakPickerWavelet.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PeakPickerWavelet.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PeakPickerWavelet.dir/build.make src/topp/CMakeFiles/PeakPickerWavelet.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Building CXX object src/topp/CMakeFiles/PeakPickerWavelet.dir/PeakPickerWavelet.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/PeakPickerWavelet.dir/PeakPickerWavelet.cpp.o -MF CMakeFiles/PeakPickerWavelet.dir/PeakPickerWavelet.cpp.o.d -o CMakeFiles/PeakPickerWavelet.dir/PeakPickerWavelet.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PeakPickerWavelet.cpp [ 92%] Linking CXX executable ../../bin/PeakPickerWavelet cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/PeakPickerWavelet.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/PeakPickerWavelet.dir/PeakPickerWavelet.cpp.o -o ../../bin/PeakPickerWavelet ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Built target PeakPickerWavelet make -f src/topp/CMakeFiles/PepNovoAdapter.dir/build.make src/topp/CMakeFiles/PepNovoAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PepNovoAdapter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PepNovoAdapter.dir/build.make src/topp/CMakeFiles/PepNovoAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Building CXX object src/topp/CMakeFiles/PepNovoAdapter.dir/PepNovoAdapter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/PepNovoAdapter.dir/PepNovoAdapter.cpp.o -MF CMakeFiles/PepNovoAdapter.dir/PepNovoAdapter.cpp.o.d -o CMakeFiles/PepNovoAdapter.dir/PepNovoAdapter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PepNovoAdapter.cpp [ 92%] Linking CXX executable ../../bin/PepNovoAdapter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/PepNovoAdapter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/PepNovoAdapter.dir/PepNovoAdapter.cpp.o -o ../../bin/PepNovoAdapter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Built target PepNovoAdapter make -f src/topp/CMakeFiles/PeptideIndexer.dir/build.make src/topp/CMakeFiles/PeptideIndexer.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PeptideIndexer.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PeptideIndexer.dir/build.make src/topp/CMakeFiles/PeptideIndexer.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Building CXX object src/topp/CMakeFiles/PeptideIndexer.dir/PeptideIndexer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/PeptideIndexer.dir/PeptideIndexer.cpp.o -MF CMakeFiles/PeptideIndexer.dir/PeptideIndexer.cpp.o.d -o CMakeFiles/PeptideIndexer.dir/PeptideIndexer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PeptideIndexer.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/basic_allocator.h:53, from /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic.h:74, from /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence.h:51, from /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/index.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/SeqanIncludeWrapper.h:44, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/PeptideIndexing.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PeptideIndexer.cpp:37: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = long unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::_reportHit(TFinder&, const Pattern >&, PatternAuxData&) [with TFinder = Finder, Alloc<> > >; TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:570:11: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/APPLICATIONS/TOPPBase.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PeptideIndexer.cpp:35: /usr/include/c++/13/new: In function 'void seqan::_reportHit(TFinder&, const Pattern >&, PatternAuxData&) [with TFinder = Finder, Alloc<> > >; TNeedle = StringSet, Alloc<> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_automaton.h:398:33: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_automaton.h:398:33, inlined from 'void seqan::_addStringToTrie(Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeyword = String, Alloc<> >; TPos = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_trie.h:98:41, inlined from 'void seqan::createTrie(Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeywords = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_trie.h:166:46, inlined from 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:422:15: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::EdgeDescriptor > >::Type seqan::addEdge(Graph >&, TVertexDescriptor, TVertexDescriptor, TLabel) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TVertexDescriptor = unsigned int; TLabel = SimpleType]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_automaton.h:436:11, inlined from 'void seqan::_addStringToTrie(Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeyword = String, Alloc<> >; TPos = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_trie.h:101:10, inlined from 'void seqan::createTrie(Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeywords = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_trie.h:166:46, inlined from 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:422:15: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::EdgeDescriptor > >::Type seqan::addEdge(Graph >&, TVertexDescriptor, TVertexDescriptor, TLabel) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TVertexDescriptor = unsigned int; TLabel = SimpleType]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_automaton.h:436:11, inlined from 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:526:18: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 92%] Linking CXX executable ../../bin/PeptideIndexer cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/PeptideIndexer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/PeptideIndexer.dir/PeptideIndexer.cpp.o -o ../../bin/PeptideIndexer ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Built target PeptideIndexer make -f src/topp/CMakeFiles/PercolatorAdapter.dir/build.make src/topp/CMakeFiles/PercolatorAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PercolatorAdapter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PercolatorAdapter.dir/build.make src/topp/CMakeFiles/PercolatorAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Building CXX object src/topp/CMakeFiles/PercolatorAdapter.dir/PercolatorAdapter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/PercolatorAdapter.dir/PercolatorAdapter.cpp.o -MF CMakeFiles/PercolatorAdapter.dir/PercolatorAdapter.cpp.o.d -o CMakeFiles/PercolatorAdapter.dir/PercolatorAdapter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PercolatorAdapter.cpp [ 92%] Linking CXX executable ../../bin/PercolatorAdapter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/PercolatorAdapter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/PercolatorAdapter.dir/PercolatorAdapter.cpp.o -o ../../bin/PercolatorAdapter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Built target PercolatorAdapter make -f src/topp/CMakeFiles/PhosphoScoring.dir/build.make src/topp/CMakeFiles/PhosphoScoring.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PhosphoScoring.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PhosphoScoring.dir/build.make src/topp/CMakeFiles/PhosphoScoring.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Building CXX object src/topp/CMakeFiles/PhosphoScoring.dir/PhosphoScoring.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/PhosphoScoring.dir/PhosphoScoring.cpp.o -MF CMakeFiles/PhosphoScoring.dir/PhosphoScoring.cpp.o.d -o CMakeFiles/PhosphoScoring.dir/PhosphoScoring.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PhosphoScoring.cpp [ 92%] Linking CXX executable ../../bin/PhosphoScoring cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/PhosphoScoring.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/PhosphoScoring.dir/PhosphoScoring.cpp.o -o ../../bin/PhosphoScoring ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Built target PhosphoScoring make -f src/topp/CMakeFiles/PrecursorIonSelector.dir/build.make src/topp/CMakeFiles/PrecursorIonSelector.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PrecursorIonSelector.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PrecursorIonSelector.dir/build.make src/topp/CMakeFiles/PrecursorIonSelector.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Building CXX object src/topp/CMakeFiles/PrecursorIonSelector.dir/PrecursorIonSelector.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/PrecursorIonSelector.dir/PrecursorIonSelector.cpp.o -MF CMakeFiles/PrecursorIonSelector.dir/PrecursorIonSelector.cpp.o.d -o CMakeFiles/PrecursorIonSelector.dir/PrecursorIonSelector.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PrecursorIonSelector.cpp [ 93%] Linking CXX executable ../../bin/PrecursorIonSelector cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/PrecursorIonSelector.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/PrecursorIonSelector.dir/PrecursorIonSelector.cpp.o -o ../../bin/PrecursorIonSelector ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target PrecursorIonSelector make -f src/topp/CMakeFiles/PrecursorMassCorrector.dir/build.make src/topp/CMakeFiles/PrecursorMassCorrector.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PrecursorMassCorrector.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PrecursorMassCorrector.dir/build.make src/topp/CMakeFiles/PrecursorMassCorrector.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Building CXX object src/topp/CMakeFiles/PrecursorMassCorrector.dir/PrecursorMassCorrector.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/PrecursorMassCorrector.dir/PrecursorMassCorrector.cpp.o -MF CMakeFiles/PrecursorMassCorrector.dir/PrecursorMassCorrector.cpp.o.d -o CMakeFiles/PrecursorMassCorrector.dir/PrecursorMassCorrector.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PrecursorMassCorrector.cpp [ 93%] Linking CXX executable ../../bin/PrecursorMassCorrector cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/PrecursorMassCorrector.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/PrecursorMassCorrector.dir/PrecursorMassCorrector.cpp.o -o ../../bin/PrecursorMassCorrector ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target PrecursorMassCorrector make -f src/topp/CMakeFiles/ProteinInference.dir/build.make src/topp/CMakeFiles/ProteinInference.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ProteinInference.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/ProteinInference.dir/build.make src/topp/CMakeFiles/ProteinInference.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Building CXX object src/topp/CMakeFiles/ProteinInference.dir/ProteinInference.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/ProteinInference.dir/ProteinInference.cpp.o -MF CMakeFiles/ProteinInference.dir/ProteinInference.cpp.o.d -o CMakeFiles/ProteinInference.dir/ProteinInference.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ProteinInference.cpp [ 93%] Linking CXX executable ../../bin/ProteinInference cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/ProteinInference.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/ProteinInference.dir/ProteinInference.cpp.o -o ../../bin/ProteinInference ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target ProteinInference make -f src/topp/CMakeFiles/ProteinQuantifier.dir/build.make src/topp/CMakeFiles/ProteinQuantifier.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ProteinQuantifier.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/ProteinQuantifier.dir/build.make src/topp/CMakeFiles/ProteinQuantifier.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Building CXX object src/topp/CMakeFiles/ProteinQuantifier.dir/ProteinQuantifier.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/ProteinQuantifier.dir/ProteinQuantifier.cpp.o -MF CMakeFiles/ProteinQuantifier.dir/ProteinQuantifier.cpp.o.d -o CMakeFiles/ProteinQuantifier.dir/ProteinQuantifier.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ProteinQuantifier.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ProteinQuantifier.cpp: In member function 'void TOPPProteinQuantifier::writeProteinTable_(OpenMS::SVOutStream&, const ProteinQuant&, const OpenMS::ExperimentalDesign&)': /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ProteinQuantifier.cpp:566:47: warning: variable 'file_it' set but not used [-Wunused-but-set-variable] 566 | ConsensusMap::ColumnHeaders::iterator file_it = columns_headers_.begin(); | ^~~~~~~ [ 93%] Linking CXX executable ../../bin/ProteinQuantifier cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/ProteinQuantifier.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/ProteinQuantifier.dir/ProteinQuantifier.cpp.o -o ../../bin/ProteinQuantifier ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target ProteinQuantifier make -f src/topp/CMakeFiles/ProteinResolver.dir/build.make src/topp/CMakeFiles/ProteinResolver.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ProteinResolver.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/ProteinResolver.dir/build.make src/topp/CMakeFiles/ProteinResolver.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Building CXX object src/topp/CMakeFiles/ProteinResolver.dir/ProteinResolver.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/ProteinResolver.dir/ProteinResolver.cpp.o -MF CMakeFiles/ProteinResolver.dir/ProteinResolver.cpp.o.d -o CMakeFiles/ProteinResolver.dir/ProteinResolver.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ProteinResolver.cpp [ 93%] Linking CXX executable ../../bin/ProteinResolver cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/ProteinResolver.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/ProteinResolver.dir/ProteinResolver.cpp.o -o ../../bin/ProteinResolver ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target ProteinResolver make -f src/topp/CMakeFiles/PTModel.dir/build.make src/topp/CMakeFiles/PTModel.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PTModel.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PTModel.dir/build.make src/topp/CMakeFiles/PTModel.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Building CXX object src/topp/CMakeFiles/PTModel.dir/PTModel.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/PTModel.dir/PTModel.cpp.o -MF CMakeFiles/PTModel.dir/PTModel.cpp.o.d -o CMakeFiles/PTModel.dir/PTModel.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PTModel.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PTModel.cpp: In member function 'virtual OpenMS::TOPPBase::ExitCodes TOPPPTModel::main_(OpenMS::Int, const char**)': /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PTModel.cpp:456:21: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 456 | random_shuffle(training_peptides.begin(), training_peptides.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/String.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/SVM/SVMWrapper.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PTModel.cpp:35: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PTModel.cpp:503:21: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 503 | random_shuffle(temp_training_peptides.begin(), temp_training_peptides.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 93%] Linking CXX executable ../../bin/PTModel cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/PTModel.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/PTModel.dir/PTModel.cpp.o -o ../../bin/PTModel ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target PTModel make -f src/topp/CMakeFiles/PTPredict.dir/build.make src/topp/CMakeFiles/PTPredict.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PTPredict.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PTPredict.dir/build.make src/topp/CMakeFiles/PTPredict.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Building CXX object src/topp/CMakeFiles/PTPredict.dir/PTPredict.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/PTPredict.dir/PTPredict.cpp.o -MF CMakeFiles/PTPredict.dir/PTPredict.cpp.o.d -o CMakeFiles/PTPredict.dir/PTPredict.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PTPredict.cpp [ 93%] Linking CXX executable ../../bin/PTPredict cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/PTPredict.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/PTPredict.dir/PTPredict.cpp.o -o ../../bin/PTPredict ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target PTPredict make -f src/topp/CMakeFiles/QualityControl.dir/build.make src/topp/CMakeFiles/QualityControl.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/QualityControl.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/QualityControl.dir/build.make src/topp/CMakeFiles/QualityControl.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Building CXX object src/topp/CMakeFiles/QualityControl.dir/QualityControl.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/QualityControl.dir/QualityControl.cpp.o -MF CMakeFiles/QualityControl.dir/QualityControl.cpp.o.d -o CMakeFiles/QualityControl.dir/QualityControl.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/QualityControl.cpp [ 95%] Linking CXX executable ../../bin/QualityControl cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/QualityControl.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/QualityControl.dir/QualityControl.cpp.o -o ../../bin/QualityControl ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 95%] Built target QualityControl make -f src/topp/CMakeFiles/RTModel.dir/build.make src/topp/CMakeFiles/RTModel.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/RTModel.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/RTModel.dir/build.make src/topp/CMakeFiles/RTModel.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 95%] Building CXX object src/topp/CMakeFiles/RTModel.dir/RTModel.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/RTModel.dir/RTModel.cpp.o -MF CMakeFiles/RTModel.dir/RTModel.cpp.o.d -o CMakeFiles/RTModel.dir/RTModel.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/RTModel.cpp [ 95%] Linking CXX executable ../../bin/RTModel cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/RTModel.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/RTModel.dir/RTModel.cpp.o -o ../../bin/RTModel ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 95%] Built target RTModel make -f src/topp/CMakeFiles/RTPredict.dir/build.make src/topp/CMakeFiles/RTPredict.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/RTPredict.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/RTPredict.dir/build.make src/topp/CMakeFiles/RTPredict.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/topp/CMakeFiles/RTPredict.dir/RTPredict.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/RTPredict.dir/RTPredict.cpp.o -MF CMakeFiles/RTPredict.dir/RTPredict.cpp.o.d -o CMakeFiles/RTPredict.dir/RTPredict.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/RTPredict.cpp [ 96%] Linking CXX executable ../../bin/RTPredict cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/RTPredict.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/RTPredict.dir/RTPredict.cpp.o -o ../../bin/RTPredict ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target RTPredict make -f src/topp/CMakeFiles/SeedListGenerator.dir/build.make src/topp/CMakeFiles/SeedListGenerator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SeedListGenerator.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SeedListGenerator.dir/build.make src/topp/CMakeFiles/SeedListGenerator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/topp/CMakeFiles/SeedListGenerator.dir/SeedListGenerator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/SeedListGenerator.dir/SeedListGenerator.cpp.o -MF CMakeFiles/SeedListGenerator.dir/SeedListGenerator.cpp.o.d -o CMakeFiles/SeedListGenerator.dir/SeedListGenerator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SeedListGenerator.cpp [ 96%] Linking CXX executable ../../bin/SeedListGenerator cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/SeedListGenerator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/SeedListGenerator.dir/SeedListGenerator.cpp.o -o ../../bin/SeedListGenerator ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target SeedListGenerator make -f src/topp/CMakeFiles/SpecLibSearcher.dir/build.make src/topp/CMakeFiles/SpecLibSearcher.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpecLibSearcher.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpecLibSearcher.dir/build.make src/topp/CMakeFiles/SpecLibSearcher.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/topp/CMakeFiles/SpecLibSearcher.dir/SpecLibSearcher.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/SpecLibSearcher.dir/SpecLibSearcher.cpp.o -MF CMakeFiles/SpecLibSearcher.dir/SpecLibSearcher.cpp.o.d -o CMakeFiles/SpecLibSearcher.dir/SpecLibSearcher.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpecLibSearcher.cpp [ 96%] Linking CXX executable ../../bin/SpecLibSearcher cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/SpecLibSearcher.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/SpecLibSearcher.dir/SpecLibSearcher.cpp.o -o ../../bin/SpecLibSearcher ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target SpecLibSearcher make -f src/topp/CMakeFiles/SpectraFilterBernNorm.dir/build.make src/topp/CMakeFiles/SpectraFilterBernNorm.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterBernNorm.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterBernNorm.dir/build.make src/topp/CMakeFiles/SpectraFilterBernNorm.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/topp/CMakeFiles/SpectraFilterBernNorm.dir/SpectraFilterBernNorm.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/SpectraFilterBernNorm.dir/SpectraFilterBernNorm.cpp.o -MF CMakeFiles/SpectraFilterBernNorm.dir/SpectraFilterBernNorm.cpp.o.d -o CMakeFiles/SpectraFilterBernNorm.dir/SpectraFilterBernNorm.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterBernNorm.cpp [ 96%] Linking CXX executable ../../bin/SpectraFilterBernNorm cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/SpectraFilterBernNorm.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/SpectraFilterBernNorm.dir/SpectraFilterBernNorm.cpp.o -o ../../bin/SpectraFilterBernNorm ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target SpectraFilterBernNorm make -f src/topp/CMakeFiles/SpectraFilterMarkerMower.dir/build.make src/topp/CMakeFiles/SpectraFilterMarkerMower.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterMarkerMower.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterMarkerMower.dir/build.make src/topp/CMakeFiles/SpectraFilterMarkerMower.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/topp/CMakeFiles/SpectraFilterMarkerMower.dir/SpectraFilterMarkerMower.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/SpectraFilterMarkerMower.dir/SpectraFilterMarkerMower.cpp.o -MF CMakeFiles/SpectraFilterMarkerMower.dir/SpectraFilterMarkerMower.cpp.o.d -o CMakeFiles/SpectraFilterMarkerMower.dir/SpectraFilterMarkerMower.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterMarkerMower.cpp [ 96%] Linking CXX executable ../../bin/SpectraFilterMarkerMower cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/SpectraFilterMarkerMower.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/SpectraFilterMarkerMower.dir/SpectraFilterMarkerMower.cpp.o -o ../../bin/SpectraFilterMarkerMower ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target SpectraFilterMarkerMower make -f src/topp/CMakeFiles/SpectraFilterNLargest.dir/build.make src/topp/CMakeFiles/SpectraFilterNLargest.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterNLargest.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterNLargest.dir/build.make src/topp/CMakeFiles/SpectraFilterNLargest.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/topp/CMakeFiles/SpectraFilterNLargest.dir/SpectraFilterNLargest.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/SpectraFilterNLargest.dir/SpectraFilterNLargest.cpp.o -MF CMakeFiles/SpectraFilterNLargest.dir/SpectraFilterNLargest.cpp.o.d -o CMakeFiles/SpectraFilterNLargest.dir/SpectraFilterNLargest.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterNLargest.cpp [ 96%] Linking CXX executable ../../bin/SpectraFilterNLargest cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/SpectraFilterNLargest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/SpectraFilterNLargest.dir/SpectraFilterNLargest.cpp.o -o ../../bin/SpectraFilterNLargest ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target SpectraFilterNLargest make -f src/topp/CMakeFiles/SpectraFilterNormalizer.dir/build.make src/topp/CMakeFiles/SpectraFilterNormalizer.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterNormalizer.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterNormalizer.dir/build.make src/topp/CMakeFiles/SpectraFilterNormalizer.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/topp/CMakeFiles/SpectraFilterNormalizer.dir/SpectraFilterNormalizer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/SpectraFilterNormalizer.dir/SpectraFilterNormalizer.cpp.o -MF CMakeFiles/SpectraFilterNormalizer.dir/SpectraFilterNormalizer.cpp.o.d -o CMakeFiles/SpectraFilterNormalizer.dir/SpectraFilterNormalizer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterNormalizer.cpp [ 96%] Linking CXX executable ../../bin/SpectraFilterNormalizer cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/SpectraFilterNormalizer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/SpectraFilterNormalizer.dir/SpectraFilterNormalizer.cpp.o -o ../../bin/SpectraFilterNormalizer ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target SpectraFilterNormalizer make -f src/topp/CMakeFiles/SpectraFilterParentPeakMower.dir/build.make src/topp/CMakeFiles/SpectraFilterParentPeakMower.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterParentPeakMower.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterParentPeakMower.dir/build.make src/topp/CMakeFiles/SpectraFilterParentPeakMower.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/topp/CMakeFiles/SpectraFilterParentPeakMower.dir/SpectraFilterParentPeakMower.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/SpectraFilterParentPeakMower.dir/SpectraFilterParentPeakMower.cpp.o -MF CMakeFiles/SpectraFilterParentPeakMower.dir/SpectraFilterParentPeakMower.cpp.o.d -o CMakeFiles/SpectraFilterParentPeakMower.dir/SpectraFilterParentPeakMower.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterParentPeakMower.cpp [ 97%] Linking CXX executable ../../bin/SpectraFilterParentPeakMower cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/SpectraFilterParentPeakMower.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/SpectraFilterParentPeakMower.dir/SpectraFilterParentPeakMower.cpp.o -o ../../bin/SpectraFilterParentPeakMower ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Built target SpectraFilterParentPeakMower make -f src/topp/CMakeFiles/SpectraFilterScaler.dir/build.make src/topp/CMakeFiles/SpectraFilterScaler.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterScaler.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterScaler.dir/build.make src/topp/CMakeFiles/SpectraFilterScaler.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Building CXX object src/topp/CMakeFiles/SpectraFilterScaler.dir/SpectraFilterScaler.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/SpectraFilterScaler.dir/SpectraFilterScaler.cpp.o -MF CMakeFiles/SpectraFilterScaler.dir/SpectraFilterScaler.cpp.o.d -o CMakeFiles/SpectraFilterScaler.dir/SpectraFilterScaler.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterScaler.cpp [ 97%] Linking CXX executable ../../bin/SpectraFilterScaler cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/SpectraFilterScaler.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/SpectraFilterScaler.dir/SpectraFilterScaler.cpp.o -o ../../bin/SpectraFilterScaler ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Built target SpectraFilterScaler make -f src/topp/CMakeFiles/SpectraFilterSqrtMower.dir/build.make src/topp/CMakeFiles/SpectraFilterSqrtMower.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterSqrtMower.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterSqrtMower.dir/build.make src/topp/CMakeFiles/SpectraFilterSqrtMower.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Building CXX object src/topp/CMakeFiles/SpectraFilterSqrtMower.dir/SpectraFilterSqrtMower.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/SpectraFilterSqrtMower.dir/SpectraFilterSqrtMower.cpp.o -MF CMakeFiles/SpectraFilterSqrtMower.dir/SpectraFilterSqrtMower.cpp.o.d -o CMakeFiles/SpectraFilterSqrtMower.dir/SpectraFilterSqrtMower.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterSqrtMower.cpp [ 97%] Linking CXX executable ../../bin/SpectraFilterSqrtMower cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/SpectraFilterSqrtMower.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/SpectraFilterSqrtMower.dir/SpectraFilterSqrtMower.cpp.o -o ../../bin/SpectraFilterSqrtMower ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Built target SpectraFilterSqrtMower make -f src/topp/CMakeFiles/SpectraFilterThresholdMower.dir/build.make src/topp/CMakeFiles/SpectraFilterThresholdMower.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterThresholdMower.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterThresholdMower.dir/build.make src/topp/CMakeFiles/SpectraFilterThresholdMower.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Building CXX object src/topp/CMakeFiles/SpectraFilterThresholdMower.dir/SpectraFilterThresholdMower.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/SpectraFilterThresholdMower.dir/SpectraFilterThresholdMower.cpp.o -MF CMakeFiles/SpectraFilterThresholdMower.dir/SpectraFilterThresholdMower.cpp.o.d -o CMakeFiles/SpectraFilterThresholdMower.dir/SpectraFilterThresholdMower.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterThresholdMower.cpp [ 97%] Linking CXX executable ../../bin/SpectraFilterThresholdMower cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/SpectraFilterThresholdMower.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/SpectraFilterThresholdMower.dir/SpectraFilterThresholdMower.cpp.o -o ../../bin/SpectraFilterThresholdMower ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Built target SpectraFilterThresholdMower make -f src/topp/CMakeFiles/SpectraFilterWindowMower.dir/build.make src/topp/CMakeFiles/SpectraFilterWindowMower.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterWindowMower.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterWindowMower.dir/build.make src/topp/CMakeFiles/SpectraFilterWindowMower.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Building CXX object src/topp/CMakeFiles/SpectraFilterWindowMower.dir/SpectraFilterWindowMower.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/SpectraFilterWindowMower.dir/SpectraFilterWindowMower.cpp.o -MF CMakeFiles/SpectraFilterWindowMower.dir/SpectraFilterWindowMower.cpp.o.d -o CMakeFiles/SpectraFilterWindowMower.dir/SpectraFilterWindowMower.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterWindowMower.cpp [ 97%] Linking CXX executable ../../bin/SpectraFilterWindowMower cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/SpectraFilterWindowMower.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/SpectraFilterWindowMower.dir/SpectraFilterWindowMower.cpp.o -o ../../bin/SpectraFilterWindowMower ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Built target SpectraFilterWindowMower make -f src/topp/CMakeFiles/SpectraMerger.dir/build.make src/topp/CMakeFiles/SpectraMerger.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraMerger.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraMerger.dir/build.make src/topp/CMakeFiles/SpectraMerger.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Building CXX object src/topp/CMakeFiles/SpectraMerger.dir/SpectraMerger.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/SpectraMerger.dir/SpectraMerger.cpp.o -MF CMakeFiles/SpectraMerger.dir/SpectraMerger.cpp.o.d -o CMakeFiles/SpectraMerger.dir/SpectraMerger.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraMerger.cpp [ 97%] Linking CXX executable ../../bin/SpectraMerger cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/SpectraMerger.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/SpectraMerger.dir/SpectraMerger.cpp.o -o ../../bin/SpectraMerger ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Built target SpectraMerger make -f src/topp/CMakeFiles/TextExporter.dir/build.make src/topp/CMakeFiles/TextExporter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/TextExporter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/TextExporter.dir/build.make src/topp/CMakeFiles/TextExporter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Building CXX object src/topp/CMakeFiles/TextExporter.dir/TextExporter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/TextExporter.dir/TextExporter.cpp.o -MF CMakeFiles/TextExporter.dir/TextExporter.cpp.o.d -o CMakeFiles/TextExporter.dir/TextExporter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/TextExporter.cpp [ 98%] Linking CXX executable ../../bin/TextExporter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/TextExporter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/TextExporter.dir/TextExporter.cpp.o -o ../../bin/TextExporter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target TextExporter make -f src/topp/CMakeFiles/TOFCalibration.dir/build.make src/topp/CMakeFiles/TOFCalibration.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/TOFCalibration.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/TOFCalibration.dir/build.make src/topp/CMakeFiles/TOFCalibration.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Building CXX object src/topp/CMakeFiles/TOFCalibration.dir/TOFCalibration.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/TOFCalibration.dir/TOFCalibration.cpp.o -MF CMakeFiles/TOFCalibration.dir/TOFCalibration.cpp.o.d -o CMakeFiles/TOFCalibration.dir/TOFCalibration.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/TOFCalibration.cpp [ 98%] Linking CXX executable ../../bin/TOFCalibration cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/TOFCalibration.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/TOFCalibration.dir/TOFCalibration.cpp.o -o ../../bin/TOFCalibration ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target TOFCalibration make -f src/topp/CMakeFiles/XFDR.dir/build.make src/topp/CMakeFiles/XFDR.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/XFDR.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/XFDR.dir/build.make src/topp/CMakeFiles/XFDR.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Building CXX object src/topp/CMakeFiles/XFDR.dir/XFDR.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/XFDR.dir/XFDR.cpp.o -MF CMakeFiles/XFDR.dir/XFDR.cpp.o.d -o CMakeFiles/XFDR.dir/XFDR.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/XFDR.cpp [100%] Linking CXX executable ../../bin/XFDR cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/XFDR.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/XFDR.dir/XFDR.cpp.o -o ../../bin/XFDR ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Built target XFDR make -f src/topp/CMakeFiles/XTandemAdapter.dir/build.make src/topp/CMakeFiles/XTandemAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/XTandemAdapter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/XTandemAdapter.dir/build.make src/topp/CMakeFiles/XTandemAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Building CXX object src/topp/CMakeFiles/XTandemAdapter.dir/XTandemAdapter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/XTandemAdapter.dir/XTandemAdapter.cpp.o -MF CMakeFiles/XTandemAdapter.dir/XTandemAdapter.cpp.o.d -o CMakeFiles/XTandemAdapter.dir/XTandemAdapter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/XTandemAdapter.cpp [100%] Linking CXX executable ../../bin/XTandemAdapter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/XTandemAdapter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -fopenmp CMakeFiles/XTandemAdapter.dir/XTandemAdapter.cpp.o -o ../../bin/XTandemAdapter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Built target XTandemAdapter make -f src/topp/CMakeFiles/ExecutePipeline.dir/build.make src/topp/CMakeFiles/ExecutePipeline.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ExecutePipeline.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/ExecutePipeline.dir/build.make src/topp/CMakeFiles/ExecutePipeline.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Building CXX object src/topp/CMakeFiles/ExecutePipeline.dir/ExecutePipeline.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/topp/CMakeFiles/ExecutePipeline.dir/ExecutePipeline.cpp.o -MF CMakeFiles/ExecutePipeline.dir/ExecutePipeline.cpp.o.d -o CMakeFiles/ExecutePipeline.dir/ExecutePipeline.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ExecutePipeline.cpp [100%] Linking CXX executable ../../bin/ExecutePipeline cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp && /usr/bin/cmake -E cmake_link_script CMakeFiles/ExecutePipeline.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/ExecutePipeline.dir/ExecutePipeline.cpp.o -o ../../bin/ExecutePipeline ../../lib/x86_64-linux-gnu/libOpenMS_GUI.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 /usr/lib/x86_64-linux-gnu/libQt5Svg.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Svg.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Built target ExecutePipeline make -f src/topp/CMakeFiles/TOPP.dir/build.make src/topp/CMakeFiles/TOPP.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/TOPP.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/TOPP.dir/build.make src/topp/CMakeFiles/TOPP.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/TOPP.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Built target TOPP make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f CMakeFiles/Makefile2 UTILS make[3]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/openms-2.6.0+cleaned1 -B/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/CMakeFiles 76 make -f CMakeFiles/Makefile2 src/utils/CMakeFiles/UTILS.dir/all make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/build.make src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/build.make src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 1%] Built target OpenSwathAlgo make -f src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/build.make src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/build.make src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 1%] Built target OpenMS_autogen_timestamp_deps make -f src/openms/CMakeFiles/OpenMS_autogen.dir/build.make src/openms/CMakeFiles/OpenMS_autogen.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS_autogen.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms/CMakeFiles/OpenMS_autogen.dir/build.make src/openms/CMakeFiles/OpenMS_autogen.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms/CMakeFiles/OpenMS_autogen.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 1%] Built target OpenMS_autogen make -f src/openms/CMakeFiles/OpenMS.dir/build.make src/openms/CMakeFiles/OpenMS.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms/CMakeFiles/OpenMS.dir/build.make src/openms/CMakeFiles/OpenMS.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms/CMakeFiles/OpenMS.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 69%] Built target OpenMS make -f src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 69%] Built target OpenMS_GUI_autogen_timestamp_deps make -f src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 69%] Built target OpenMS_GUI_autogen make -f src/openms_gui/CMakeFiles/OpenMS_GUI.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/OpenMS_GUI.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms_gui/CMakeFiles/OpenMS_GUI.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Built target OpenMS_GUI make -f src/utils/CMakeFiles/INIUpdater.dir/build.make src/utils/CMakeFiles/INIUpdater.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/INIUpdater.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/INIUpdater.dir/build.make src/utils/CMakeFiles/INIUpdater.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Building CXX object src/utils/CMakeFiles/INIUpdater.dir/INIUpdater.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/INIUpdater.dir/INIUpdater.cpp.o -MF CMakeFiles/INIUpdater.dir/INIUpdater.cpp.o.d -o CMakeFiles/INIUpdater.dir/INIUpdater.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/INIUpdater.cpp [ 84%] Linking CXX executable ../../bin/INIUpdater cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/INIUpdater.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/INIUpdater.dir/INIUpdater.cpp.o -o ../../bin/INIUpdater ../../lib/x86_64-linux-gnu/libOpenMS_GUI.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 /usr/lib/x86_64-linux-gnu/libQt5Svg.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so 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'/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Built target INIUpdater make -f src/utils/CMakeFiles/AccurateMassSearch.dir/build.make src/utils/CMakeFiles/AccurateMassSearch.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/AccurateMassSearch.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/AccurateMassSearch.dir/build.make src/utils/CMakeFiles/AccurateMassSearch.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Building CXX object src/utils/CMakeFiles/AccurateMassSearch.dir/AccurateMassSearch.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include 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/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/AccurateMassSearch.dir/AccurateMassSearch.cpp.o -MF CMakeFiles/AccurateMassSearch.dir/AccurateMassSearch.cpp.o.d -o CMakeFiles/AccurateMassSearch.dir/AccurateMassSearch.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/AccurateMassSearch.cpp [ 84%] Linking CXX executable ../../bin/AccurateMassSearch cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/AccurateMassSearch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/AccurateMassSearch.dir/AccurateMassSearch.cpp.o -o ../../bin/AccurateMassSearch ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Built target AccurateMassSearch make -f src/utils/CMakeFiles/AssayGeneratorMetabo.dir/build.make src/utils/CMakeFiles/AssayGeneratorMetabo.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/AssayGeneratorMetabo.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/AssayGeneratorMetabo.dir/build.make src/utils/CMakeFiles/AssayGeneratorMetabo.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Building CXX object src/utils/CMakeFiles/AssayGeneratorMetabo.dir/AssayGeneratorMetabo.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/AssayGeneratorMetabo.dir/AssayGeneratorMetabo.cpp.o -MF CMakeFiles/AssayGeneratorMetabo.dir/AssayGeneratorMetabo.cpp.o.d -o CMakeFiles/AssayGeneratorMetabo.dir/AssayGeneratorMetabo.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/AssayGeneratorMetabo.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/DataProcessing.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ChromatogramSettings.h:43, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSChromatogram.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/MSExperiment.h:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/MAPMATCHING/FeatureMapping.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/SiriusAdapterAlgorithm.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/AssayGeneratorMetabo.cpp:35: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 84%] Linking CXX executable ../../bin/AssayGeneratorMetabo cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/AssayGeneratorMetabo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/AssayGeneratorMetabo.dir/AssayGeneratorMetabo.cpp.o -o ../../bin/AssayGeneratorMetabo ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Built target AssayGeneratorMetabo make -f src/utils/CMakeFiles/ClusterMassTraces.dir/build.make src/utils/CMakeFiles/ClusterMassTraces.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/ClusterMassTraces.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/ClusterMassTraces.dir/build.make src/utils/CMakeFiles/ClusterMassTraces.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Building CXX object src/utils/CMakeFiles/ClusterMassTraces.dir/ClusterMassTraces.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/ClusterMassTraces.dir/ClusterMassTraces.cpp.o -MF CMakeFiles/ClusterMassTraces.dir/ClusterMassTraces.cpp.o.d -o CMakeFiles/ClusterMassTraces.dir/ClusterMassTraces.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ClusterMassTraces.cpp [ 84%] Linking CXX executable ../../bin/ClusterMassTraces cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/ClusterMassTraces.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/ClusterMassTraces.dir/ClusterMassTraces.cpp.o -o ../../bin/ClusterMassTraces ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Built target ClusterMassTraces make -f src/utils/CMakeFiles/ClusterMassTracesByPrecursor.dir/build.make src/utils/CMakeFiles/ClusterMassTracesByPrecursor.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/ClusterMassTracesByPrecursor.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/ClusterMassTracesByPrecursor.dir/build.make src/utils/CMakeFiles/ClusterMassTracesByPrecursor.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Building CXX object src/utils/CMakeFiles/ClusterMassTracesByPrecursor.dir/ClusterMassTracesByPrecursor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/ClusterMassTracesByPrecursor.dir/ClusterMassTracesByPrecursor.cpp.o -MF CMakeFiles/ClusterMassTracesByPrecursor.dir/ClusterMassTracesByPrecursor.cpp.o.d -o CMakeFiles/ClusterMassTracesByPrecursor.dir/ClusterMassTracesByPrecursor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ClusterMassTracesByPrecursor.cpp [ 84%] Linking CXX executable ../../bin/ClusterMassTracesByPrecursor cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/ClusterMassTracesByPrecursor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/ClusterMassTracesByPrecursor.dir/ClusterMassTracesByPrecursor.cpp.o -o ../../bin/ClusterMassTracesByPrecursor ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Built target ClusterMassTracesByPrecursor make -f src/utils/CMakeFiles/CVInspector.dir/build.make src/utils/CMakeFiles/CVInspector.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/CVInspector.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/CVInspector.dir/build.make src/utils/CMakeFiles/CVInspector.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Building CXX object src/utils/CMakeFiles/CVInspector.dir/CVInspector.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/CVInspector.dir/CVInspector.cpp.o -MF CMakeFiles/CVInspector.dir/CVInspector.cpp.o.d -o CMakeFiles/CVInspector.dir/CVInspector.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/CVInspector.cpp [ 84%] Linking CXX executable ../../bin/CVInspector cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/CVInspector.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/CVInspector.dir/CVInspector.cpp.o -o ../../bin/CVInspector ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Built target CVInspector make -f src/utils/CMakeFiles/DatabaseFilter.dir/build.make src/utils/CMakeFiles/DatabaseFilter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/DatabaseFilter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/DatabaseFilter.dir/build.make src/utils/CMakeFiles/DatabaseFilter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Building CXX object src/utils/CMakeFiles/DatabaseFilter.dir/DatabaseFilter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/DatabaseFilter.dir/DatabaseFilter.cpp.o -MF CMakeFiles/DatabaseFilter.dir/DatabaseFilter.cpp.o.d -o CMakeFiles/DatabaseFilter.dir/DatabaseFilter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/DatabaseFilter.cpp [ 85%] Linking CXX executable ../../bin/DatabaseFilter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/DatabaseFilter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/DatabaseFilter.dir/DatabaseFilter.cpp.o -o ../../bin/DatabaseFilter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Built target DatabaseFilter make -f src/utils/CMakeFiles/DecoyDatabase.dir/build.make src/utils/CMakeFiles/DecoyDatabase.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/DecoyDatabase.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/DecoyDatabase.dir/build.make src/utils/CMakeFiles/DecoyDatabase.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Building CXX object src/utils/CMakeFiles/DecoyDatabase.dir/DecoyDatabase.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/DecoyDatabase.dir/DecoyDatabase.cpp.o -MF CMakeFiles/DecoyDatabase.dir/DecoyDatabase.cpp.o.d -o CMakeFiles/DecoyDatabase.dir/DecoyDatabase.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/DecoyDatabase.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/DecoyDatabase.cpp: In member function 'virtual OpenMS::TOPPBase::ExitCodes TOPPDecoyDatabase::main_(int, const char**)': /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/DecoyDatabase.cpp:250:27: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 250 | random_shuffle(tokenized.begin(), tokenized.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/functional:67, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ProteinHit.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ProteinIdentification.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/IdXMLFile.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/DecoyDatabase.cpp:35: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 85%] Linking CXX executable ../../bin/DecoyDatabase cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/DecoyDatabase.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/DecoyDatabase.dir/DecoyDatabase.cpp.o -o ../../bin/DecoyDatabase ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Built target DecoyDatabase make -f src/utils/CMakeFiles/DeMeanderize.dir/build.make src/utils/CMakeFiles/DeMeanderize.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/DeMeanderize.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/DeMeanderize.dir/build.make src/utils/CMakeFiles/DeMeanderize.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Building CXX object src/utils/CMakeFiles/DeMeanderize.dir/DeMeanderize.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB 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-Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/DeMeanderize.dir/DeMeanderize.cpp.o -MF CMakeFiles/DeMeanderize.dir/DeMeanderize.cpp.o.d -o CMakeFiles/DeMeanderize.dir/DeMeanderize.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/DeMeanderize.cpp [ 85%] Linking CXX executable ../../bin/DeMeanderize cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/DeMeanderize.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/DeMeanderize.dir/DeMeanderize.cpp.o -o ../../bin/DeMeanderize ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Built target DeMeanderize make -f src/utils/CMakeFiles/Digestor.dir/build.make src/utils/CMakeFiles/Digestor.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/Digestor.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/Digestor.dir/build.make src/utils/CMakeFiles/Digestor.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Building CXX object src/utils/CMakeFiles/Digestor.dir/Digestor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB 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-Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/Digestor.dir/Digestor.cpp.o -MF CMakeFiles/Digestor.dir/Digestor.cpp.o.d -o CMakeFiles/Digestor.dir/Digestor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/Digestor.cpp [ 86%] Linking CXX executable ../../bin/Digestor cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/Digestor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Digestor.dir/Digestor.cpp.o -o ../../bin/Digestor ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Built target Digestor make -f src/utils/CMakeFiles/DigestorMotif.dir/build.make src/utils/CMakeFiles/DigestorMotif.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends 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src/utils/CMakeFiles/DigestorMotif.dir/DigestorMotif.cpp.o -MF CMakeFiles/DigestorMotif.dir/DigestorMotif.cpp.o.d -o CMakeFiles/DigestorMotif.dir/DigestorMotif.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/DigestorMotif.cpp [ 86%] Linking CXX executable ../../bin/DigestorMotif cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/DigestorMotif.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/DigestorMotif.dir/DigestorMotif.cpp.o -o ../../bin/DigestorMotif ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Built target DigestorMotif make -f src/utils/CMakeFiles/Epifany.dir/build.make src/utils/CMakeFiles/Epifany.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/Epifany.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/Epifany.dir/build.make src/utils/CMakeFiles/Epifany.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Building CXX object src/utils/CMakeFiles/Epifany.dir/Epifany.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem 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-Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/Epifany.dir/Epifany.cpp.o -MF CMakeFiles/Epifany.dir/Epifany.cpp.o.d -o CMakeFiles/Epifany.dir/Epifany.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/Epifany.cpp [ 86%] Linking CXX executable ../../bin/Epifany cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/Epifany.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Epifany.dir/Epifany.cpp.o -o ../../bin/Epifany ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Built target Epifany make -f src/utils/CMakeFiles/ERPairFinder.dir/build.make src/utils/CMakeFiles/ERPairFinder.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/ERPairFinder.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/ERPairFinder.dir/build.make src/utils/CMakeFiles/ERPairFinder.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Building CXX object src/utils/CMakeFiles/ERPairFinder.dir/ERPairFinder.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem 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/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/ERPairFinder.dir/ERPairFinder.cpp.o -MF CMakeFiles/ERPairFinder.dir/ERPairFinder.cpp.o.d -o CMakeFiles/ERPairFinder.dir/ERPairFinder.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ERPairFinder.cpp [ 86%] Linking CXX executable ../../bin/ERPairFinder cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/ERPairFinder.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/ERPairFinder.dir/ERPairFinder.cpp.o -o ../../bin/ERPairFinder ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Built target ERPairFinder make -f src/utils/CMakeFiles/FeatureFinderMetaboIdent.dir/build.make src/utils/CMakeFiles/FeatureFinderMetaboIdent.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/FeatureFinderMetaboIdent.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/FeatureFinderMetaboIdent.dir/build.make src/utils/CMakeFiles/FeatureFinderMetaboIdent.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Building CXX object src/utils/CMakeFiles/FeatureFinderMetaboIdent.dir/FeatureFinderMetaboIdent.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/FeatureFinderMetaboIdent.dir/FeatureFinderMetaboIdent.cpp.o -MF CMakeFiles/FeatureFinderMetaboIdent.dir/FeatureFinderMetaboIdent.cpp.o.d -o CMakeFiles/FeatureFinderMetaboIdent.dir/FeatureFinderMetaboIdent.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/FeatureFinderMetaboIdent.cpp [ 88%] Linking CXX executable ../../bin/FeatureFinderMetaboIdent cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/FeatureFinderMetaboIdent.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/FeatureFinderMetaboIdent.dir/FeatureFinderMetaboIdent.cpp.o -o ../../bin/FeatureFinderMetaboIdent ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Built target FeatureFinderMetaboIdent make -f src/superhirn/CMakeFiles/SuperHirn.dir/build.make src/superhirn/CMakeFiles/SuperHirn.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/superhirn/CMakeFiles/SuperHirn.dir/build.make src/superhirn/CMakeFiles/SuperHirn.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Building CXX object src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmSH.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DSuperHirn_EXPORTS -I/build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmSH.cpp.o -MF CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmSH.cpp.o.d -o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmSH.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmSH.cpp [ 88%] Building CXX object src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmSHCtrl.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DSuperHirn_EXPORTS -I/build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmSHCtrl.cpp.o -MF CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmSHCtrl.cpp.o.d -o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmSHCtrl.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmSHCtrl.cpp [ 88%] Building CXX object src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/BackgroundControl.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DSuperHirn_EXPORTS -I/build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/BackgroundControl.cpp.o -MF CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/BackgroundControl.cpp.o.d -o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/BackgroundControl.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/BackgroundControl.cpp [ 88%] Building CXX object src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/BackgroundIntensityBin.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DSuperHirn_EXPORTS -I/build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/BackgroundIntensityBin.cpp.o -MF CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/BackgroundIntensityBin.cpp.o.d -o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/BackgroundIntensityBin.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/BackgroundIntensityBin.cpp [ 88%] Building CXX object src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/CentroidData.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DSuperHirn_EXPORTS -I/build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/CentroidData.cpp.o -MF CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/CentroidData.cpp.o.d -o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/CentroidData.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/CentroidData.cpp [ 88%] Building CXX object src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/CentroidPeak.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DSuperHirn_EXPORTS -I/build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem 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-fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/ClusteredMS2ConsensusSpectrum.cpp.o -MF CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/ClusteredMS2ConsensusSpectrum.cpp.o.d -o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/ClusteredMS2ConsensusSpectrum.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/ClusteredMS2ConsensusSpectrum.cpp [ 88%] Building CXX object src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/Deisotoper.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DSuperHirn_EXPORTS -I/build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem 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/build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/Deisotoper.cpp [ 88%] Building CXX object src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/FTPeakDetectController.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DSuperHirn_EXPORTS -I/build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian 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-Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/FTPeakDetectController.cpp.o -MF CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/FTPeakDetectController.cpp.o.d -o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/FTPeakDetectController.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/FTPeakDetectController.cpp [ 88%] Building CXX object src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/IsotopicDist.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DSuperHirn_EXPORTS -I/build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include 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/build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/IsotopicDist.cpp [ 88%] Building CXX object src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/LCMSCData.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DSuperHirn_EXPORTS -I/build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra 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-Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SuperHirnParameters.cpp.o -MF CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SuperHirnParameters.cpp.o.d -o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SuperHirnParameters.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SuperHirnParameters.cpp [ 89%] Building CXX object src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/LCElutionPeak.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DSuperHirn_EXPORTS -I/build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src 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-Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS1FeatureMerger.cpp.o -MF CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS1FeatureMerger.cpp.o.d -o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS1FeatureMerger.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS1FeatureMerger.cpp [ 89%] Building CXX object src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS2ConsensusSpectrum.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DSuperHirn_EXPORTS -I/build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include 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/build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS2ConsensusSpectrum.cpp [ 89%] Building CXX object src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS2Fragment.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DSuperHirn_EXPORTS -I/build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian 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/usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/ProcessData.cpp.o -MF CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/ProcessData.cpp.o.d -o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/ProcessData.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/ProcessData.cpp [ 89%] Building CXX object src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/RawData.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DSuperHirn_EXPORTS -I/build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include 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-Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/ConsensusIsotopePattern.cpp.o -MF CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/ConsensusIsotopePattern.cpp.o.d -o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/ConsensusIsotopePattern.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/ConsensusIsotopePattern.cpp [ 89%] Building CXX object src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SHFeature.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DSuperHirn_EXPORTS -I/build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -I/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src 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/usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MSPeak.cpp.o -MF CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MSPeak.cpp.o.d -o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MSPeak.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MSPeak.cpp [ 90%] Linking CXX shared library ../../lib/x86_64-linux-gnu/libSuperHirn.so cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn && /usr/bin/cmake -E cmake_link_script CMakeFiles/SuperHirn.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libSuperHirn.so.2.6.0 -o ../../lib/x86_64-linux-gnu/libSuperHirn.so.2.6.0 CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmSH.cpp.o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmSHCtrl.cpp.o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/BackgroundControl.cpp.o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/BackgroundIntensityBin.cpp.o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/CentroidData.cpp.o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/CentroidPeak.cpp.o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/ClusteredMS2ConsensusSpectrum.cpp.o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/Deisotoper.cpp.o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/FTPeakDetectController.cpp.o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/IsotopicDist.cpp.o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/LCMSCData.cpp.o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/LCMS.cpp.o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SuperHirnParameters.cpp.o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/LCElutionPeak.cpp.o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS1FeatureMerger.cpp.o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS2ConsensusSpectrum.cpp.o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS2Fragment.cpp.o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS2Feature.cpp.o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/ProcessData.cpp.o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/RawData.cpp.o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/ConsensusIsotopePattern.cpp.o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SHFeature.cpp.o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/FeatureLCProfile.cpp.o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS2Info.cpp.o CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MSPeak.cpp.o ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn && /usr/bin/cmake -E cmake_symlink_library ../../lib/x86_64-linux-gnu/libSuperHirn.so.2.6.0 ../../lib/x86_64-linux-gnu/libSuperHirn.so.2.6.0 ../../lib/x86_64-linux-gnu/libSuperHirn.so make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Built target SuperHirn make -f src/utils/CMakeFiles/FeatureFinderSuperHirn.dir/build.make src/utils/CMakeFiles/FeatureFinderSuperHirn.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/FeatureFinderSuperHirn.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/FeatureFinderSuperHirn.dir/build.make src/utils/CMakeFiles/FeatureFinderSuperHirn.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Building CXX object src/utils/CMakeFiles/FeatureFinderSuperHirn.dir/FeatureFinderSuperHirn.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/FeatureFinderSuperHirn.dir/FeatureFinderSuperHirn.cpp.o -MF CMakeFiles/FeatureFinderSuperHirn.dir/FeatureFinderSuperHirn.cpp.o.d -o CMakeFiles/FeatureFinderSuperHirn.dir/FeatureFinderSuperHirn.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/FeatureFinderSuperHirn.cpp [ 90%] Linking CXX executable ../../bin/FeatureFinderSuperHirn cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/FeatureFinderSuperHirn.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/FeatureFinderSuperHirn.dir/FeatureFinderSuperHirn.cpp.o -o ../../bin/FeatureFinderSuperHirn /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 ../../lib/x86_64-linux-gnu/libSuperHirn.so.2.6.0 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Built target FeatureFinderSuperHirn make -f src/utils/CMakeFiles/FFEval.dir/build.make src/utils/CMakeFiles/FFEval.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/FFEval.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/FFEval.dir/build.make src/utils/CMakeFiles/FFEval.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Building CXX object src/utils/CMakeFiles/FFEval.dir/FFEval.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/FFEval.dir/FFEval.cpp.o -MF CMakeFiles/FFEval.dir/FFEval.cpp.o.d -o CMakeFiles/FFEval.dir/FFEval.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/FFEval.cpp [ 92%] Linking CXX executable ../../bin/FFEval cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/FFEval.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/FFEval.dir/FFEval.cpp.o -o ../../bin/FFEval ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Built target FFEval make -f src/utils/CMakeFiles/FuzzyDiff.dir/build.make src/utils/CMakeFiles/FuzzyDiff.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/FuzzyDiff.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/FuzzyDiff.dir/build.make src/utils/CMakeFiles/FuzzyDiff.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Building CXX object src/utils/CMakeFiles/FuzzyDiff.dir/FuzzyDiff.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem 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CMakeFiles/FuzzyDiff.dir/FuzzyDiff.cpp.o.d -o CMakeFiles/FuzzyDiff.dir/FuzzyDiff.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/FuzzyDiff.cpp [ 92%] Linking CXX executable ../../bin/FuzzyDiff cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/FuzzyDiff.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/FuzzyDiff.dir/FuzzyDiff.cpp.o -o ../../bin/FuzzyDiff ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Built target FuzzyDiff make -f src/utils/CMakeFiles/IDDecoyProbability.dir/build.make src/utils/CMakeFiles/IDDecoyProbability.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/IDDecoyProbability.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/IDDecoyProbability.dir/build.make src/utils/CMakeFiles/IDDecoyProbability.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Building CXX object src/utils/CMakeFiles/IDDecoyProbability.dir/IDDecoyProbability.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/IDDecoyProbability.dir/IDDecoyProbability.cpp.o -MF CMakeFiles/IDDecoyProbability.dir/IDDecoyProbability.cpp.o.d -o CMakeFiles/IDDecoyProbability.dir/IDDecoyProbability.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDDecoyProbability.cpp [ 92%] Linking CXX executable ../../bin/IDDecoyProbability cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/IDDecoyProbability.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/IDDecoyProbability.dir/IDDecoyProbability.cpp.o -o ../../bin/IDDecoyProbability ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Built target IDDecoyProbability make -f src/utils/CMakeFiles/IDExtractor.dir/build.make src/utils/CMakeFiles/IDExtractor.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/IDExtractor.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/IDExtractor.dir/build.make src/utils/CMakeFiles/IDExtractor.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Building CXX object src/utils/CMakeFiles/IDExtractor.dir/IDExtractor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/IDExtractor.dir/IDExtractor.cpp.o -MF CMakeFiles/IDExtractor.dir/IDExtractor.cpp.o.d -o CMakeFiles/IDExtractor.dir/IDExtractor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDExtractor.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDExtractor.cpp: In member function 'virtual OpenMS::TOPPBase::ExitCodes TOPPIDExtractor::main_(int, const char**)': /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDExtractor.cpp:192:21: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 192 | random_shuffle(indices.begin(), indices.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/functional:67, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ProteinHit.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/METADATA/ProteinIdentification.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FORMAT/IdXMLFile.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDExtractor.cpp:35: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 92%] Linking CXX executable ../../bin/IDExtractor cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/IDExtractor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/IDExtractor.dir/IDExtractor.cpp.o -o ../../bin/IDExtractor ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Built target IDExtractor make -f src/utils/CMakeFiles/IDMassAccuracy.dir/build.make src/utils/CMakeFiles/IDMassAccuracy.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/IDMassAccuracy.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/IDMassAccuracy.dir/build.make src/utils/CMakeFiles/IDMassAccuracy.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Building CXX object src/utils/CMakeFiles/IDMassAccuracy.dir/IDMassAccuracy.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/IDMassAccuracy.dir/IDMassAccuracy.cpp.o -MF CMakeFiles/IDMassAccuracy.dir/IDMassAccuracy.cpp.o.d -o CMakeFiles/IDMassAccuracy.dir/IDMassAccuracy.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDMassAccuracy.cpp [ 92%] Linking CXX executable ../../bin/IDMassAccuracy cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/IDMassAccuracy.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/IDMassAccuracy.dir/IDMassAccuracy.cpp.o -o ../../bin/IDMassAccuracy ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Built target IDMassAccuracy make -f src/utils/CMakeFiles/IDScoreSwitcher.dir/build.make src/utils/CMakeFiles/IDScoreSwitcher.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/IDScoreSwitcher.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/IDScoreSwitcher.dir/build.make src/utils/CMakeFiles/IDScoreSwitcher.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Building CXX object src/utils/CMakeFiles/IDScoreSwitcher.dir/IDScoreSwitcher.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/IDScoreSwitcher.dir/IDScoreSwitcher.cpp.o -MF CMakeFiles/IDScoreSwitcher.dir/IDScoreSwitcher.cpp.o.d -o CMakeFiles/IDScoreSwitcher.dir/IDScoreSwitcher.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDScoreSwitcher.cpp [ 92%] Linking CXX executable ../../bin/IDScoreSwitcher cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/IDScoreSwitcher.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/IDScoreSwitcher.dir/IDScoreSwitcher.cpp.o -o ../../bin/IDScoreSwitcher ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Built target IDScoreSwitcher make -f src/utils/CMakeFiles/IDSplitter.dir/build.make src/utils/CMakeFiles/IDSplitter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/IDSplitter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/IDSplitter.dir/build.make src/utils/CMakeFiles/IDSplitter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Building CXX object src/utils/CMakeFiles/IDSplitter.dir/IDSplitter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/IDSplitter.dir/IDSplitter.cpp.o -MF CMakeFiles/IDSplitter.dir/IDSplitter.cpp.o.d -o CMakeFiles/IDSplitter.dir/IDSplitter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDSplitter.cpp [ 92%] Linking CXX executable ../../bin/IDSplitter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/IDSplitter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/IDSplitter.dir/IDSplitter.cpp.o -o ../../bin/IDSplitter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Built target IDSplitter make -f src/utils/CMakeFiles/LabeledEval.dir/build.make src/utils/CMakeFiles/LabeledEval.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/LabeledEval.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/LabeledEval.dir/build.make src/utils/CMakeFiles/LabeledEval.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Building CXX object src/utils/CMakeFiles/LabeledEval.dir/LabeledEval.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/LabeledEval.dir/LabeledEval.cpp.o -MF CMakeFiles/LabeledEval.dir/LabeledEval.cpp.o.d -o CMakeFiles/LabeledEval.dir/LabeledEval.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/LabeledEval.cpp [ 92%] Linking CXX executable ../../bin/LabeledEval cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/LabeledEval.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/LabeledEval.dir/LabeledEval.cpp.o -o ../../bin/LabeledEval ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Built target LabeledEval make -f src/utils/CMakeFiles/MassCalculator.dir/build.make src/utils/CMakeFiles/MassCalculator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MassCalculator.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MassCalculator.dir/build.make src/utils/CMakeFiles/MassCalculator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Building CXX object src/utils/CMakeFiles/MassCalculator.dir/MassCalculator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/MassCalculator.dir/MassCalculator.cpp.o -MF CMakeFiles/MassCalculator.dir/MassCalculator.cpp.o.d -o CMakeFiles/MassCalculator.dir/MassCalculator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MassCalculator.cpp [ 92%] Linking CXX executable ../../bin/MassCalculator cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/MassCalculator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/MassCalculator.dir/MassCalculator.cpp.o -o ../../bin/MassCalculator ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Built target MassCalculator make -f src/utils/CMakeFiles/MetaboliteAdductDecharger.dir/build.make src/utils/CMakeFiles/MetaboliteAdductDecharger.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MetaboliteAdductDecharger.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MetaboliteAdductDecharger.dir/build.make src/utils/CMakeFiles/MetaboliteAdductDecharger.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Building CXX object src/utils/CMakeFiles/MetaboliteAdductDecharger.dir/MetaboliteAdductDecharger.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/MetaboliteAdductDecharger.dir/MetaboliteAdductDecharger.cpp.o -MF CMakeFiles/MetaboliteAdductDecharger.dir/MetaboliteAdductDecharger.cpp.o.d -o CMakeFiles/MetaboliteAdductDecharger.dir/MetaboliteAdductDecharger.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MetaboliteAdductDecharger.cpp [ 93%] Linking CXX executable ../../bin/MetaboliteAdductDecharger cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/MetaboliteAdductDecharger.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/MetaboliteAdductDecharger.dir/MetaboliteAdductDecharger.cpp.o -o ../../bin/MetaboliteAdductDecharger ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target MetaboliteAdductDecharger make -f src/utils/CMakeFiles/MetaboliteSpectralMatcher.dir/build.make src/utils/CMakeFiles/MetaboliteSpectralMatcher.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MetaboliteSpectralMatcher.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MetaboliteSpectralMatcher.dir/build.make src/utils/CMakeFiles/MetaboliteSpectralMatcher.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Building CXX object src/utils/CMakeFiles/MetaboliteSpectralMatcher.dir/MetaboliteSpectralMatcher.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/MetaboliteSpectralMatcher.dir/MetaboliteSpectralMatcher.cpp.o -MF CMakeFiles/MetaboliteSpectralMatcher.dir/MetaboliteSpectralMatcher.cpp.o.d -o CMakeFiles/MetaboliteSpectralMatcher.dir/MetaboliteSpectralMatcher.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MetaboliteSpectralMatcher.cpp [ 93%] Linking CXX executable ../../bin/MetaboliteSpectralMatcher cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/MetaboliteSpectralMatcher.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/MetaboliteSpectralMatcher.dir/MetaboliteSpectralMatcher.cpp.o -o ../../bin/MetaboliteSpectralMatcher ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target MetaboliteSpectralMatcher make -f src/utils/CMakeFiles/MetaProSIP.dir/build.make src/utils/CMakeFiles/MetaProSIP.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MetaProSIP.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MetaProSIP.dir/build.make src/utils/CMakeFiles/MetaProSIP.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Building CXX object src/utils/CMakeFiles/MetaProSIP.dir/MetaProSIP.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/MetaProSIP.dir/MetaProSIP.cpp.o -MF CMakeFiles/MetaProSIP.dir/MetaProSIP.cpp.o.d -o CMakeFiles/MetaProSIP.dir/MetaProSIP.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MetaProSIP.cpp /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MetaProSIP.cpp:195:15: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 195 | public std::binary_function, vector, bool> | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Exception.h:42, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Macros.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DIntervalBase.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DBoundingBox.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/ConvexHull2D.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/Feature.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/FeatureMap.h:37, from /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MetaProSIP.cpp:35: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MetaProSIP.cpp:205:15: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 205 | public std::binary_function, pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MetaProSIP.cpp:215:15: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 215 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/iostream:41, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/PrecisionWrapper.h:40, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/DPosition.h:39: In member function 'std::basic_ostream<_CharT, _Traits>::__ostream_type& std::basic_ostream<_CharT, _Traits>::operator<<(double) [with _CharT = char; _Traits = std::char_traits]', inlined from 'MapRateToScoreType MetaProSIP::normalizeToMax(const MapRateToScoreType&)' at /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MetaProSIP.cpp:2480:52, inlined from 'virtual OpenMS::TOPPBase::ExitCodes MetaProSIP::main_(int, const char**)' at /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MetaProSIP.cpp:3529:105: /usr/include/c++/13/ostream:223:25: warning: 'best_rate' may be used uninitialized [-Wmaybe-uninitialized] 223 | { return _M_insert(__f); } | ~~~~~~~~~^~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MetaProSIP.cpp: In member function 'virtual OpenMS::TOPPBase::ExitCodes MetaProSIP::main_(int, const char**)': /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MetaProSIP.cpp:2475:12: note: 'best_rate' was declared here 2475 | double best_rate, best_score; | ^~~~~~~~~ [ 93%] Linking CXX executable ../../bin/MetaProSIP cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/MetaProSIP.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/MetaProSIP.dir/MetaProSIP.cpp.o -o ../../bin/MetaProSIP ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target MetaProSIP make -f src/utils/CMakeFiles/MRMPairFinder.dir/build.make src/utils/CMakeFiles/MRMPairFinder.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MRMPairFinder.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MRMPairFinder.dir/build.make src/utils/CMakeFiles/MRMPairFinder.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Building CXX object src/utils/CMakeFiles/MRMPairFinder.dir/MRMPairFinder.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/MRMPairFinder.dir/MRMPairFinder.cpp.o -MF CMakeFiles/MRMPairFinder.dir/MRMPairFinder.cpp.o.d -o CMakeFiles/MRMPairFinder.dir/MRMPairFinder.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MRMPairFinder.cpp [ 93%] Linking CXX executable ../../bin/MRMPairFinder cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/MRMPairFinder.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/MRMPairFinder.dir/MRMPairFinder.cpp.o -o ../../bin/MRMPairFinder ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target MRMPairFinder make -f src/utils/CMakeFiles/MSFraggerAdapter.dir/build.make src/utils/CMakeFiles/MSFraggerAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MSFraggerAdapter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MSFraggerAdapter.dir/build.make src/utils/CMakeFiles/MSFraggerAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Building CXX object src/utils/CMakeFiles/MSFraggerAdapter.dir/MSFraggerAdapter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/MSFraggerAdapter.dir/MSFraggerAdapter.cpp.o -MF CMakeFiles/MSFraggerAdapter.dir/MSFraggerAdapter.cpp.o.d -o CMakeFiles/MSFraggerAdapter.dir/MSFraggerAdapter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MSFraggerAdapter.cpp [ 93%] Linking CXX executable ../../bin/MSFraggerAdapter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/MSFraggerAdapter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/MSFraggerAdapter.dir/MSFraggerAdapter.cpp.o -o ../../bin/MSFraggerAdapter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target MSFraggerAdapter make -f src/utils/CMakeFiles/MSSimulator.dir/build.make src/utils/CMakeFiles/MSSimulator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MSSimulator.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MSSimulator.dir/build.make src/utils/CMakeFiles/MSSimulator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Building CXX object src/utils/CMakeFiles/MSSimulator.dir/MSSimulator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB 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-Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/MSSimulator.dir/MSSimulator.cpp.o -MF CMakeFiles/MSSimulator.dir/MSSimulator.cpp.o.d -o CMakeFiles/MSSimulator.dir/MSSimulator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MSSimulator.cpp [ 93%] Linking CXX executable ../../bin/MSSimulator cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/MSSimulator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/MSSimulator.dir/MSSimulator.cpp.o -o ../../bin/MSSimulator ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target MSSimulator make -f src/utils/CMakeFiles/MSstatsConverter.dir/build.make src/utils/CMakeFiles/MSstatsConverter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MSstatsConverter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MSstatsConverter.dir/build.make src/utils/CMakeFiles/MSstatsConverter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Building CXX object src/utils/CMakeFiles/MSstatsConverter.dir/MSstatsConverter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ 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-Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/MSstatsConverter.dir/MSstatsConverter.cpp.o -MF CMakeFiles/MSstatsConverter.dir/MSstatsConverter.cpp.o.d -o CMakeFiles/MSstatsConverter.dir/MSstatsConverter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MSstatsConverter.cpp [ 94%] Linking CXX executable ../../bin/MSstatsConverter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/MSstatsConverter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/MSstatsConverter.dir/MSstatsConverter.cpp.o -o ../../bin/MSstatsConverter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Built target MSstatsConverter make -f src/utils/CMakeFiles/MultiplexResolver.dir/build.make src/utils/CMakeFiles/MultiplexResolver.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MultiplexResolver.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MultiplexResolver.dir/build.make src/utils/CMakeFiles/MultiplexResolver.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Building CXX object src/utils/CMakeFiles/MultiplexResolver.dir/MultiplexResolver.cpp.o cd 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/build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/MultiplexResolver.dir/MultiplexResolver.cpp.o -MF CMakeFiles/MultiplexResolver.dir/MultiplexResolver.cpp.o.d -o CMakeFiles/MultiplexResolver.dir/MultiplexResolver.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MultiplexResolver.cpp [ 94%] Linking CXX executable ../../bin/MultiplexResolver cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/MultiplexResolver.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/MultiplexResolver.dir/MultiplexResolver.cpp.o -o ../../bin/MultiplexResolver ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Built target MultiplexResolver make -f src/utils/CMakeFiles/MzMLSplitter.dir/build.make src/utils/CMakeFiles/MzMLSplitter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MzMLSplitter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MzMLSplitter.dir/build.make src/utils/CMakeFiles/MzMLSplitter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Building CXX object src/utils/CMakeFiles/MzMLSplitter.dir/MzMLSplitter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/MzMLSplitter.dir/MzMLSplitter.cpp.o -MF CMakeFiles/MzMLSplitter.dir/MzMLSplitter.cpp.o.d -o CMakeFiles/MzMLSplitter.dir/MzMLSplitter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MzMLSplitter.cpp [ 94%] Linking CXX executable ../../bin/MzMLSplitter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/MzMLSplitter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/MzMLSplitter.dir/MzMLSplitter.cpp.o -o ../../bin/MzMLSplitter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Built target MzMLSplitter make -f src/utils/CMakeFiles/NovorAdapter.dir/build.make src/utils/CMakeFiles/NovorAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/NovorAdapter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/NovorAdapter.dir/build.make src/utils/CMakeFiles/NovorAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Building CXX object src/utils/CMakeFiles/NovorAdapter.dir/NovorAdapter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/NovorAdapter.dir/NovorAdapter.cpp.o -MF CMakeFiles/NovorAdapter.dir/NovorAdapter.cpp.o.d -o CMakeFiles/NovorAdapter.dir/NovorAdapter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/NovorAdapter.cpp [ 94%] Linking CXX executable ../../bin/NovorAdapter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/NovorAdapter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/NovorAdapter.dir/NovorAdapter.cpp.o -o ../../bin/NovorAdapter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Built target NovorAdapter make -f src/utils/CMakeFiles/NucleicAcidSearchEngine.dir/build.make src/utils/CMakeFiles/NucleicAcidSearchEngine.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/NucleicAcidSearchEngine.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/NucleicAcidSearchEngine.dir/build.make src/utils/CMakeFiles/NucleicAcidSearchEngine.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Building CXX object src/utils/CMakeFiles/NucleicAcidSearchEngine.dir/NucleicAcidSearchEngine.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/NucleicAcidSearchEngine.dir/NucleicAcidSearchEngine.cpp.o -MF CMakeFiles/NucleicAcidSearchEngine.dir/NucleicAcidSearchEngine.cpp.o.d -o CMakeFiles/NucleicAcidSearchEngine.dir/NucleicAcidSearchEngine.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/NucleicAcidSearchEngine.cpp [ 94%] Linking CXX executable ../../bin/NucleicAcidSearchEngine cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/NucleicAcidSearchEngine.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/NucleicAcidSearchEngine.dir/NucleicAcidSearchEngine.cpp.o -o ../../bin/NucleicAcidSearchEngine ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Built target NucleicAcidSearchEngine make -f src/utils/CMakeFiles/OpenMSInfo.dir/build.make src/utils/CMakeFiles/OpenMSInfo.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/OpenMSInfo.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/OpenMSInfo.dir/build.make src/utils/CMakeFiles/OpenMSInfo.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Building CXX object src/utils/CMakeFiles/OpenMSInfo.dir/OpenMSInfo.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/OpenMSInfo.dir/OpenMSInfo.cpp.o -MF CMakeFiles/OpenMSInfo.dir/OpenMSInfo.cpp.o.d -o CMakeFiles/OpenMSInfo.dir/OpenMSInfo.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenMSInfo.cpp [ 94%] Linking CXX executable ../../bin/OpenMSInfo cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMSInfo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/OpenMSInfo.dir/OpenMSInfo.cpp.o -o ../../bin/OpenMSInfo ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Built target OpenMSInfo make -f src/utils/CMakeFiles/PeakPickerIterative.dir/build.make src/utils/CMakeFiles/PeakPickerIterative.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/PeakPickerIterative.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/PeakPickerIterative.dir/build.make src/utils/CMakeFiles/PeakPickerIterative.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Building CXX object src/utils/CMakeFiles/PeakPickerIterative.dir/PeakPickerIterative.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/PeakPickerIterative.dir/PeakPickerIterative.cpp.o -MF CMakeFiles/PeakPickerIterative.dir/PeakPickerIterative.cpp.o.d -o CMakeFiles/PeakPickerIterative.dir/PeakPickerIterative.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/PeakPickerIterative.cpp [ 94%] Linking CXX executable ../../bin/PeakPickerIterative cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/PeakPickerIterative.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/PeakPickerIterative.dir/PeakPickerIterative.cpp.o -o ../../bin/PeakPickerIterative ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Built target PeakPickerIterative make -f src/utils/CMakeFiles/PSMFeatureExtractor.dir/build.make src/utils/CMakeFiles/PSMFeatureExtractor.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/PSMFeatureExtractor.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/PSMFeatureExtractor.dir/build.make src/utils/CMakeFiles/PSMFeatureExtractor.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Building CXX object src/utils/CMakeFiles/PSMFeatureExtractor.dir/PSMFeatureExtractor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/PSMFeatureExtractor.dir/PSMFeatureExtractor.cpp.o -MF CMakeFiles/PSMFeatureExtractor.dir/PSMFeatureExtractor.cpp.o.d -o CMakeFiles/PSMFeatureExtractor.dir/PSMFeatureExtractor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/PSMFeatureExtractor.cpp [ 94%] Linking CXX executable ../../bin/PSMFeatureExtractor cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/PSMFeatureExtractor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/PSMFeatureExtractor.dir/PSMFeatureExtractor.cpp.o -o ../../bin/PSMFeatureExtractor ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Built target PSMFeatureExtractor make -f src/utils/CMakeFiles/QCCalculator.dir/build.make src/utils/CMakeFiles/QCCalculator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCCalculator.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/QCCalculator.dir/build.make src/utils/CMakeFiles/QCCalculator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Building CXX object src/utils/CMakeFiles/QCCalculator.dir/QCCalculator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/QCCalculator.dir/QCCalculator.cpp.o -MF CMakeFiles/QCCalculator.dir/QCCalculator.cpp.o.d -o CMakeFiles/QCCalculator.dir/QCCalculator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCCalculator.cpp [ 94%] Linking CXX executable ../../bin/QCCalculator cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/QCCalculator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/QCCalculator.dir/QCCalculator.cpp.o -o ../../bin/QCCalculator ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Built target QCCalculator make -f src/utils/CMakeFiles/QCEmbedder.dir/build.make src/utils/CMakeFiles/QCEmbedder.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCEmbedder.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/QCEmbedder.dir/build.make src/utils/CMakeFiles/QCEmbedder.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/utils/CMakeFiles/QCEmbedder.dir/QCEmbedder.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/QCEmbedder.dir/QCEmbedder.cpp.o -MF CMakeFiles/QCEmbedder.dir/QCEmbedder.cpp.o.d -o CMakeFiles/QCEmbedder.dir/QCEmbedder.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCEmbedder.cpp [ 96%] Linking CXX executable ../../bin/QCEmbedder cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/QCEmbedder.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/QCEmbedder.dir/QCEmbedder.cpp.o -o ../../bin/QCEmbedder ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target QCEmbedder make -f src/utils/CMakeFiles/QCExporter.dir/build.make src/utils/CMakeFiles/QCExporter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCExporter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory 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/usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target QCExporter make -f src/utils/CMakeFiles/QCExtractor.dir/build.make src/utils/CMakeFiles/QCExtractor.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCExtractor.dir/DependInfo.cmake "--color=" make[5]: Leaving directory 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/usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/QCExtractor.dir/QCExtractor.cpp.o -MF CMakeFiles/QCExtractor.dir/QCExtractor.cpp.o.d -o CMakeFiles/QCExtractor.dir/QCExtractor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCExtractor.cpp [ 96%] Linking CXX executable ../../bin/QCExtractor cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/QCExtractor.dir/link.txt --verbose=1 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/usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target QCExtractor make -f src/utils/CMakeFiles/QCImporter.dir/build.make src/utils/CMakeFiles/QCImporter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCImporter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/QCImporter.dir/build.make src/utils/CMakeFiles/QCImporter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/utils/CMakeFiles/QCImporter.dir/QCImporter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/QCImporter.dir/QCImporter.cpp.o -MF CMakeFiles/QCImporter.dir/QCImporter.cpp.o.d -o CMakeFiles/QCImporter.dir/QCImporter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCImporter.cpp [ 96%] Linking CXX executable ../../bin/QCImporter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/QCImporter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/QCImporter.dir/QCImporter.cpp.o -o ../../bin/QCImporter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target QCImporter make -f src/utils/CMakeFiles/QCMerger.dir/build.make src/utils/CMakeFiles/QCMerger.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCMerger.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/QCMerger.dir/build.make src/utils/CMakeFiles/QCMerger.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/utils/CMakeFiles/QCMerger.dir/QCMerger.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/QCMerger.dir/QCMerger.cpp.o -MF CMakeFiles/QCMerger.dir/QCMerger.cpp.o.d -o CMakeFiles/QCMerger.dir/QCMerger.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCMerger.cpp [ 96%] Linking CXX executable ../../bin/QCMerger cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/QCMerger.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 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/usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target QCMerger make -f src/utils/CMakeFiles/QCShrinker.dir/build.make src/utils/CMakeFiles/QCShrinker.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCShrinker.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/QCShrinker.dir/build.make src/utils/CMakeFiles/QCShrinker.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/utils/CMakeFiles/QCShrinker.dir/QCShrinker.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/QCShrinker.dir/QCShrinker.cpp.o -MF CMakeFiles/QCShrinker.dir/QCShrinker.cpp.o.d -o CMakeFiles/QCShrinker.dir/QCShrinker.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCShrinker.cpp [ 96%] Linking CXX executable ../../bin/QCShrinker cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/QCShrinker.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/QCShrinker.dir/QCShrinker.cpp.o -o ../../bin/QCShrinker ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target QCShrinker make -f src/utils/CMakeFiles/ProteomicsLFQ.dir/build.make src/utils/CMakeFiles/ProteomicsLFQ.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/ProteomicsLFQ.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/ProteomicsLFQ.dir/build.make src/utils/CMakeFiles/ProteomicsLFQ.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/utils/CMakeFiles/ProteomicsLFQ.dir/ProteomicsLFQ.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/ProteomicsLFQ.dir/ProteomicsLFQ.cpp.o -MF CMakeFiles/ProteomicsLFQ.dir/ProteomicsLFQ.cpp.o.d -o CMakeFiles/ProteomicsLFQ.dir/ProteomicsLFQ.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ProteomicsLFQ.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/basic_allocator.h:53, from /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic.h:74, from /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence.h:51, from /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/index.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/SeqanIncludeWrapper.h:44, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/PeptideIndexing.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ProteomicsLFQ.cpp:85: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = long unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::_reportHit(TFinder&, const Pattern >&, PatternAuxData&) [with TFinder = Finder, Alloc<> > >; TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:570:11: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/new_allocator.h:34, from /usr/include/x86_64-linux-gnu/c++/13/bits/c++allocator.h:33, from /usr/include/c++/13/bits/allocator.h:46, from /usr/include/c++/13/vector:63, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/MATH/STATISTICS/StatisticFunctions.h:36, from /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ProteomicsLFQ.cpp:34: /usr/include/c++/13/new: In function 'void seqan::_reportHit(TFinder&, const Pattern >&, PatternAuxData&) [with TFinder = Finder, Alloc<> > >; TNeedle = StringSet, Alloc<> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_automaton.h:398:33: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_automaton.h:398:33, inlined from 'void seqan::_addStringToTrie(Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeyword = String, Alloc<> >; TPos = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_trie.h:98:41, inlined from 'void seqan::createTrie(Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeywords = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_trie.h:166:46, inlined from 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:422:15: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::EdgeDescriptor > >::Type seqan::addEdge(Graph >&, TVertexDescriptor, TVertexDescriptor, TLabel) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TVertexDescriptor = unsigned int; TLabel = SimpleType]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_automaton.h:436:11, inlined from 'void seqan::_addStringToTrie(Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeyword = String, Alloc<> >; TPos = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_trie.h:101:10, inlined from 'void seqan::createTrie(Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeywords = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_trie.h:166:46, inlined from 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:422:15: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::EdgeDescriptor > >::Type seqan::addEdge(Graph >&, TVertexDescriptor, TVertexDescriptor, TLabel) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TVertexDescriptor = unsigned int; TLabel = SimpleType]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_automaton.h:436:11, inlined from 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:526:18: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 96%] Linking CXX executable ../../bin/ProteomicsLFQ cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/ProteomicsLFQ.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/ProteomicsLFQ.dir/ProteomicsLFQ.cpp.o -o ../../bin/ProteomicsLFQ ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target ProteomicsLFQ make -f src/utils/CMakeFiles/RNADigestor.dir/build.make src/utils/CMakeFiles/RNADigestor.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/RNADigestor.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/RNADigestor.dir/build.make src/utils/CMakeFiles/RNADigestor.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/utils/CMakeFiles/RNADigestor.dir/RNADigestor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/RNADigestor.dir/RNADigestor.cpp.o -MF CMakeFiles/RNADigestor.dir/RNADigestor.cpp.o.d -o CMakeFiles/RNADigestor.dir/RNADigestor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RNADigestor.cpp [ 96%] Linking CXX executable ../../bin/RNADigestor cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/RNADigestor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/RNADigestor.dir/RNADigestor.cpp.o -o ../../bin/RNADigestor ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target RNADigestor make -f src/utils/CMakeFiles/RNAMassCalculator.dir/build.make src/utils/CMakeFiles/RNAMassCalculator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/RNAMassCalculator.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/RNAMassCalculator.dir/build.make src/utils/CMakeFiles/RNAMassCalculator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/utils/CMakeFiles/RNAMassCalculator.dir/RNAMassCalculator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/RNAMassCalculator.dir/RNAMassCalculator.cpp.o -MF CMakeFiles/RNAMassCalculator.dir/RNAMassCalculator.cpp.o.d -o CMakeFiles/RNAMassCalculator.dir/RNAMassCalculator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RNAMassCalculator.cpp [ 96%] Linking CXX executable ../../bin/RNAMassCalculator cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/RNAMassCalculator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/RNAMassCalculator.dir/RNAMassCalculator.cpp.o -o ../../bin/RNAMassCalculator ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target RNAMassCalculator make -f src/utils/CMakeFiles/RNPxlXICFilter.dir/build.make src/utils/CMakeFiles/RNPxlXICFilter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/RNPxlXICFilter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/RNPxlXICFilter.dir/build.make src/utils/CMakeFiles/RNPxlXICFilter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/utils/CMakeFiles/RNPxlXICFilter.dir/RNPxlXICFilter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/RNPxlXICFilter.dir/RNPxlXICFilter.cpp.o -MF CMakeFiles/RNPxlXICFilter.dir/RNPxlXICFilter.cpp.o.d -o CMakeFiles/RNPxlXICFilter.dir/RNPxlXICFilter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RNPxlXICFilter.cpp [ 96%] Linking CXX executable ../../bin/RNPxlXICFilter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/RNPxlXICFilter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/RNPxlXICFilter.dir/RNPxlXICFilter.cpp.o -o ../../bin/RNPxlXICFilter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target RNPxlXICFilter make -f src/utils/CMakeFiles/RNPxlSearch.dir/build.make src/utils/CMakeFiles/RNPxlSearch.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/RNPxlSearch.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/RNPxlSearch.dir/build.make src/utils/CMakeFiles/RNPxlSearch.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/utils/CMakeFiles/RNPxlSearch.dir/RNPxlSearch.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/RNPxlSearch.dir/RNPxlSearch.cpp.o -MF CMakeFiles/RNPxlSearch.dir/RNPxlSearch.cpp.o.d -o CMakeFiles/RNPxlSearch.dir/RNPxlSearch.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RNPxlSearch.cpp In file included from /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/basic_allocator.h:53, from /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic.h:74, from /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence.h:51, from /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/index.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/SeqanIncludeWrapper.h:44, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/PeptideIndexing.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RNPxlSearch.cpp:37: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = long unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::_reportHit(TFinder&, const Pattern >&, PatternAuxData&) [with TFinder = Finder, Alloc<> > >; TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:570:11: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/new_allocator.h:34, from /usr/include/x86_64-linux-gnu/c++/13/bits/c++allocator.h:33, from /usr/include/c++/13/bits/allocator.h:46, from /usr/include/c++/13/string:43, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CONCEPT/Constants.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RNPxlSearch.cpp:35: /usr/include/c++/13/new: In function 'void seqan::_reportHit(TFinder&, const Pattern >&, PatternAuxData&) [with TFinder = Finder, Alloc<> > >; TNeedle = StringSet, Alloc<> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_automaton.h:398:33: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_automaton.h:398:33, inlined from 'void seqan::_addStringToTrie(Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeyword = String, Alloc<> >; TPos = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_trie.h:98:41, inlined from 'void seqan::createTrie(Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeywords = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_trie.h:166:46, inlined from 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:422:15: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::EdgeDescriptor > >::Type seqan::addEdge(Graph >&, TVertexDescriptor, TVertexDescriptor, TLabel) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TVertexDescriptor = unsigned int; TLabel = SimpleType]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_automaton.h:436:11, inlined from 'void seqan::_addStringToTrie(Graph >&, TTerminalStateMap&, const TKeyword&, const TPos&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeyword = String, Alloc<> >; TPos = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_trie.h:101:10, inlined from 'void seqan::createTrie(Graph >&, TTerminalStateMap&, const TKeywords&) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TTerminalStateMap = String > >; TKeywords = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_trie.h:166:46, inlined from 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:422:15: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::EdgeDescriptor > >::Type seqan::addEdge(Graph >&, TVertexDescriptor, TVertexDescriptor, TLabel) [with TAlphabet = SimpleType; TCargo = void; TSpec = Tag; TVertexDescriptor = unsigned int; TLabel = SimpleType]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/graph_types/graph_impl_automaton.h:436:11, inlined from 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:526:18: /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_createAcTrie(Pattern >&) [with TNeedle = StringSet, Alloc<> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /usr/include/c++/13/string:51: In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const unsigned int; _Up = unsigned int; bool _IsMove = false]', inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const unsigned int*; _OI = unsigned int*]' at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const unsigned int*; _OI = unsigned int*]' at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const unsigned int*; _OI = unsigned int*]' at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from '_OI std::copy(_II, _II, _OI) [with _II = const unsigned int*; _OI = unsigned int*]' at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from 'void seqan::_arrayCopyForwardDefault(TSource1, TSource2, TTarget) [with TTarget = unsigned int*; TSource1 = const unsigned int*; TSource2 = const unsigned int*]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/array_construct_destruct.h:855:16, inlined from 'void seqan::arrayCopyForward(TSource1, TSource2, TTarget) [with TTarget = unsigned int*; TSource1 = const unsigned int*; TSource2 = const unsigned int*]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/array_construct_destruct.h:865:29, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = const unsigned int; TValueTarget = unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/array_construct_destruct.h:1398:21, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = const unsigned int; TValueTarget = unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/basic/array_construct_destruct.h:1429:31, inlined from 'static void seqan::AssignString_::assign_(TTarget&, TSource&, typename seqan::Size::Type) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1151:31, inlined from 'void seqan::assign(String&, const TSource&, TSize, Tag) [with TTargetValue = unsigned int; TTargetSpec = Alloc<>; TSource = String >; TSize = long unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1185:42, inlined from 'void seqan::assign(TTarget&, const TSource&, typename Size::Type) [with TTarget = String >; TSource = String >]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/sequence_interface.h:1554:11, inlined from 'seqan::String >::String(const TSource&, TSize) [with TSource = seqan::String >; TSize = long unsigned int; TValue = unsigned int; TSpec = void]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_alloc.h:164:19, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1373:47, inlined from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = long unsigned int; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1421:42, inlined from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const unsigned int; TExpand = seqan::Tag]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1374:19, inlined from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = long unsigned int; TTargetSpec = Alloc<>; TSource = unsigned int; TExpand = TagGenerous_]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/string_base.h:1421:42, inlined from 'void seqan::append(TTarget&, const TSource&) [with TTarget = String >; TSource = unsigned int]' at /build/reproducible-path/openms-2.6.0+cleaned1/debian/seqan/sequence/sequence_interface.h:1626:11, inlined from 'void seqan::addHits(const Pattern >&, PatternAuxData&, const Spawn&) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:665:15, inlined from 'bool seqan::_consumeChar(const Pattern >&, PatternAuxData&, Spawn&, AAcid) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:739:12, inlined from 'bool seqan::_spawnConsumeChar(const Pattern >&, PatternAuxData&, Spawn&, AAcid) [with TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:795:25, inlined from 'bool seqan::find(TFinder&, const Pattern >&, PatternAuxData&) [with TFinder = Finder, Alloc<> > >; TNeedle = StringSet, Alloc<> > >]' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:913:33, inlined from 'bool OpenMS::AhoCorasickAmbiguous::findNext(const FuzzyACPattern&)' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h:1039:27, inlined from 'void OpenMS::PeptideIndexing::addHits_(OpenMS::AhoCorasickAmbiguous&, const OpenMS::AhoCorasickAmbiguous::FuzzyACPattern&, const OpenMS::AhoCorasickAmbiguous::PeptideDB&, const OpenMS::String&, const OpenMS::String&, OpenMS::SignedSize, OpenMS::Int, FoundProteinFunctor&) const' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/PeptideIndexing.h:908:30, inlined from '_ZN6OpenMS15PeptideIndexing3runINS_10TFI_VectorEEENS0_9ExitCodesERNS_14FASTAContainerIT_EERSt6vectorINS_21ProteinIdentificationESaIS9_EERS8_INS_21PeptideIdentificationESaISD_EE._omp_fn.0' at /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/ID/PeptideIndexing.h:474:27: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'void* __builtin_memmove(void*, const void*, long unsigned int)' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 96%] Linking CXX executable ../../bin/RNPxlSearch cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/RNPxlSearch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/RNPxlSearch.dir/RNPxlSearch.cpp.o -o ../../bin/RNPxlSearch ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target RNPxlSearch make -f src/utils/CMakeFiles/RTEvaluation.dir/build.make src/utils/CMakeFiles/RTEvaluation.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/RTEvaluation.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/RTEvaluation.dir/build.make src/utils/CMakeFiles/RTEvaluation.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/utils/CMakeFiles/RTEvaluation.dir/RTEvaluation.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/RTEvaluation.dir/RTEvaluation.cpp.o -MF CMakeFiles/RTEvaluation.dir/RTEvaluation.cpp.o.d -o CMakeFiles/RTEvaluation.dir/RTEvaluation.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RTEvaluation.cpp [ 96%] Linking CXX executable ../../bin/RTEvaluation cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/RTEvaluation.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/RTEvaluation.dir/RTEvaluation.cpp.o -o ../../bin/RTEvaluation ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target RTEvaluation make -f src/utils/CMakeFiles/SemanticValidator.dir/build.make src/utils/CMakeFiles/SemanticValidator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SemanticValidator.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/SemanticValidator.dir/build.make src/utils/CMakeFiles/SemanticValidator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/utils/CMakeFiles/SemanticValidator.dir/SemanticValidator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/SemanticValidator.dir/SemanticValidator.cpp.o -MF CMakeFiles/SemanticValidator.dir/SemanticValidator.cpp.o.d -o CMakeFiles/SemanticValidator.dir/SemanticValidator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SemanticValidator.cpp [ 96%] Linking CXX executable ../../bin/SemanticValidator cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/SemanticValidator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/SemanticValidator.dir/SemanticValidator.cpp.o -o ../../bin/SemanticValidator ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target SemanticValidator make -f src/utils/CMakeFiles/SequenceCoverageCalculator.dir/build.make src/utils/CMakeFiles/SequenceCoverageCalculator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SequenceCoverageCalculator.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/SequenceCoverageCalculator.dir/build.make src/utils/CMakeFiles/SequenceCoverageCalculator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/utils/CMakeFiles/SequenceCoverageCalculator.dir/SequenceCoverageCalculator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/SequenceCoverageCalculator.dir/SequenceCoverageCalculator.cpp.o -MF CMakeFiles/SequenceCoverageCalculator.dir/SequenceCoverageCalculator.cpp.o.d -o CMakeFiles/SequenceCoverageCalculator.dir/SequenceCoverageCalculator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SequenceCoverageCalculator.cpp [ 96%] Linking CXX executable ../../bin/SequenceCoverageCalculator cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/SequenceCoverageCalculator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/SequenceCoverageCalculator.dir/SequenceCoverageCalculator.cpp.o -o ../../bin/SequenceCoverageCalculator ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target SequenceCoverageCalculator make -f src/utils/CMakeFiles/SimpleSearchEngine.dir/build.make src/utils/CMakeFiles/SimpleSearchEngine.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SimpleSearchEngine.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/SimpleSearchEngine.dir/build.make src/utils/CMakeFiles/SimpleSearchEngine.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/utils/CMakeFiles/SimpleSearchEngine.dir/SimpleSearchEngine.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/SimpleSearchEngine.dir/SimpleSearchEngine.cpp.o -MF CMakeFiles/SimpleSearchEngine.dir/SimpleSearchEngine.cpp.o.d -o CMakeFiles/SimpleSearchEngine.dir/SimpleSearchEngine.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SimpleSearchEngine.cpp [ 96%] Linking CXX executable ../../bin/SimpleSearchEngine cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimpleSearchEngine.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/SimpleSearchEngine.dir/SimpleSearchEngine.cpp.o -o ../../bin/SimpleSearchEngine ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target SimpleSearchEngine make -f src/utils/CMakeFiles/SiriusAdapter.dir/build.make src/utils/CMakeFiles/SiriusAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SiriusAdapter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/SiriusAdapter.dir/build.make src/utils/CMakeFiles/SiriusAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Building CXX object src/utils/CMakeFiles/SiriusAdapter.dir/SiriusAdapter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/SiriusAdapter.dir/SiriusAdapter.cpp.o -MF CMakeFiles/SiriusAdapter.dir/SiriusAdapter.cpp.o.d -o CMakeFiles/SiriusAdapter.dir/SiriusAdapter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SiriusAdapter.cpp [ 96%] Linking CXX executable ../../bin/SiriusAdapter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/SiriusAdapter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/SiriusAdapter.dir/SiriusAdapter.cpp.o -o ../../bin/SiriusAdapter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target SiriusAdapter make -f src/utils/CMakeFiles/SpecLibCreator.dir/build.make src/utils/CMakeFiles/SpecLibCreator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SpecLibCreator.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/SpecLibCreator.dir/build.make src/utils/CMakeFiles/SpecLibCreator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Building CXX object src/utils/CMakeFiles/SpecLibCreator.dir/SpecLibCreator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/SpecLibCreator.dir/SpecLibCreator.cpp.o -MF CMakeFiles/SpecLibCreator.dir/SpecLibCreator.cpp.o.d -o CMakeFiles/SpecLibCreator.dir/SpecLibCreator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SpecLibCreator.cpp [ 97%] Linking CXX executable ../../bin/SpecLibCreator cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/SpecLibCreator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/SpecLibCreator.dir/SpecLibCreator.cpp.o -o ../../bin/SpecLibCreator ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Built target SpecLibCreator make -f src/utils/CMakeFiles/SpectraSTSearchAdapter.dir/build.make src/utils/CMakeFiles/SpectraSTSearchAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SpectraSTSearchAdapter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/SpectraSTSearchAdapter.dir/build.make src/utils/CMakeFiles/SpectraSTSearchAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Building CXX object src/utils/CMakeFiles/SpectraSTSearchAdapter.dir/SpectraSTSearchAdapter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/SpectraSTSearchAdapter.dir/SpectraSTSearchAdapter.cpp.o -MF CMakeFiles/SpectraSTSearchAdapter.dir/SpectraSTSearchAdapter.cpp.o.d -o CMakeFiles/SpectraSTSearchAdapter.dir/SpectraSTSearchAdapter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SpectraSTSearchAdapter.cpp [ 97%] Linking CXX executable ../../bin/SpectraSTSearchAdapter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/SpectraSTSearchAdapter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/SpectraSTSearchAdapter.dir/SpectraSTSearchAdapter.cpp.o -o ../../bin/SpectraSTSearchAdapter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Built target SpectraSTSearchAdapter make -f src/utils/CMakeFiles/StaticModification.dir/build.make src/utils/CMakeFiles/StaticModification.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/StaticModification.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/StaticModification.dir/build.make src/utils/CMakeFiles/StaticModification.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Building CXX object src/utils/CMakeFiles/StaticModification.dir/StaticModification.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/StaticModification.dir/StaticModification.cpp.o -MF CMakeFiles/StaticModification.dir/StaticModification.cpp.o.d -o CMakeFiles/StaticModification.dir/StaticModification.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/StaticModification.cpp [ 98%] Linking CXX executable ../../bin/StaticModification cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/StaticModification.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/StaticModification.dir/StaticModification.cpp.o -o ../../bin/StaticModification ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target StaticModification make -f src/utils/CMakeFiles/SvmTheoreticalSpectrumGeneratorTrainer.dir/build.make src/utils/CMakeFiles/SvmTheoreticalSpectrumGeneratorTrainer.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SvmTheoreticalSpectrumGeneratorTrainer.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/SvmTheoreticalSpectrumGeneratorTrainer.dir/build.make src/utils/CMakeFiles/SvmTheoreticalSpectrumGeneratorTrainer.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Building CXX object src/utils/CMakeFiles/SvmTheoreticalSpectrumGeneratorTrainer.dir/SvmTheoreticalSpectrumGeneratorTrainer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/SvmTheoreticalSpectrumGeneratorTrainer.dir/SvmTheoreticalSpectrumGeneratorTrainer.cpp.o -MF CMakeFiles/SvmTheoreticalSpectrumGeneratorTrainer.dir/SvmTheoreticalSpectrumGeneratorTrainer.cpp.o.d -o CMakeFiles/SvmTheoreticalSpectrumGeneratorTrainer.dir/SvmTheoreticalSpectrumGeneratorTrainer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SvmTheoreticalSpectrumGeneratorTrainer.cpp [ 98%] Linking CXX executable ../../bin/SvmTheoreticalSpectrumGeneratorTrainer cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/SvmTheoreticalSpectrumGeneratorTrainer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/SvmTheoreticalSpectrumGeneratorTrainer.dir/SvmTheoreticalSpectrumGeneratorTrainer.cpp.o -o ../../bin/SvmTheoreticalSpectrumGeneratorTrainer ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target SvmTheoreticalSpectrumGeneratorTrainer make -f src/utils/CMakeFiles/TICCalculator.dir/build.make src/utils/CMakeFiles/TICCalculator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/TICCalculator.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/TICCalculator.dir/build.make src/utils/CMakeFiles/TICCalculator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Building CXX object src/utils/CMakeFiles/TICCalculator.dir/TICCalculator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/TICCalculator.dir/TICCalculator.cpp.o -MF CMakeFiles/TICCalculator.dir/TICCalculator.cpp.o.d -o CMakeFiles/TICCalculator.dir/TICCalculator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/TICCalculator.cpp [ 98%] Linking CXX executable ../../bin/TICCalculator cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/TICCalculator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/TICCalculator.dir/TICCalculator.cpp.o -o ../../bin/TICCalculator ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target TICCalculator make -f src/utils/CMakeFiles/TransformationEvaluation.dir/build.make src/utils/CMakeFiles/TransformationEvaluation.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/TransformationEvaluation.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/TransformationEvaluation.dir/build.make src/utils/CMakeFiles/TransformationEvaluation.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Building CXX object src/utils/CMakeFiles/TransformationEvaluation.dir/TransformationEvaluation.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem 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src/utils/CMakeFiles/TransformationEvaluation.dir/TransformationEvaluation.cpp.o -MF CMakeFiles/TransformationEvaluation.dir/TransformationEvaluation.cpp.o.d -o CMakeFiles/TransformationEvaluation.dir/TransformationEvaluation.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/TransformationEvaluation.cpp [ 98%] Linking CXX executable ../../bin/TransformationEvaluation cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/TransformationEvaluation.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/TransformationEvaluation.dir/TransformationEvaluation.cpp.o -o ../../bin/TransformationEvaluation ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target TransformationEvaluation make -f src/utils/CMakeFiles/XMLValidator.dir/build.make src/utils/CMakeFiles/XMLValidator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/XMLValidator.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/XMLValidator.dir/build.make src/utils/CMakeFiles/XMLValidator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Building CXX object src/utils/CMakeFiles/XMLValidator.dir/XMLValidator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/XMLValidator.dir/XMLValidator.cpp.o -MF CMakeFiles/XMLValidator.dir/XMLValidator.cpp.o.d -o CMakeFiles/XMLValidator.dir/XMLValidator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/XMLValidator.cpp [ 98%] Linking CXX executable ../../bin/XMLValidator cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/XMLValidator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/XMLValidator.dir/XMLValidator.cpp.o -o ../../bin/XMLValidator ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target XMLValidator make -f src/utils/CMakeFiles/TargetedFileConverter.dir/build.make src/utils/CMakeFiles/TargetedFileConverter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/TargetedFileConverter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/TargetedFileConverter.dir/build.make src/utils/CMakeFiles/TargetedFileConverter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Building CXX object src/utils/CMakeFiles/TargetedFileConverter.dir/TargetedFileConverter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/TargetedFileConverter.dir/TargetedFileConverter.cpp.o -MF CMakeFiles/TargetedFileConverter.dir/TargetedFileConverter.cpp.o.d -o CMakeFiles/TargetedFileConverter.dir/TargetedFileConverter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/TargetedFileConverter.cpp [ 98%] Linking CXX executable ../../bin/TargetedFileConverter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/TargetedFileConverter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/TargetedFileConverter.dir/TargetedFileConverter.cpp.o -o ../../bin/TargetedFileConverter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target TargetedFileConverter make -f src/utils/CMakeFiles/OpenSwathDIAPreScoring.dir/build.make src/utils/CMakeFiles/OpenSwathDIAPreScoring.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/OpenSwathDIAPreScoring.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/OpenSwathDIAPreScoring.dir/build.make src/utils/CMakeFiles/OpenSwathDIAPreScoring.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Building CXX object src/utils/CMakeFiles/OpenSwathDIAPreScoring.dir/OpenSwathDIAPreScoring.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/OpenSwathDIAPreScoring.dir/OpenSwathDIAPreScoring.cpp.o -MF CMakeFiles/OpenSwathDIAPreScoring.dir/OpenSwathDIAPreScoring.cpp.o.d -o CMakeFiles/OpenSwathDIAPreScoring.dir/OpenSwathDIAPreScoring.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathDIAPreScoring.cpp In file included from /usr/include/boost/bind/detail/requires_cxx11.hpp:9, from /usr/include/boost/bind/bind.hpp:24, from /usr/include/boost/bind.hpp:29, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/ANALYSIS/OPENSWATH/DIAPrescoring.h:39, from /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathDIAPreScoring.cpp:36: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 98%] Linking CXX executable ../../bin/OpenSwathDIAPreScoring cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenSwathDIAPreScoring.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/OpenSwathDIAPreScoring.dir/OpenSwathDIAPreScoring.cpp.o -o ../../bin/OpenSwathDIAPreScoring ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target OpenSwathDIAPreScoring make -f src/utils/CMakeFiles/OpenSwathMzMLFileCacher.dir/build.make src/utils/CMakeFiles/OpenSwathMzMLFileCacher.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/OpenSwathMzMLFileCacher.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/OpenSwathMzMLFileCacher.dir/build.make src/utils/CMakeFiles/OpenSwathMzMLFileCacher.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Building CXX object src/utils/CMakeFiles/OpenSwathMzMLFileCacher.dir/OpenSwathMzMLFileCacher.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/OpenSwathMzMLFileCacher.dir/OpenSwathMzMLFileCacher.cpp.o -MF CMakeFiles/OpenSwathMzMLFileCacher.dir/OpenSwathMzMLFileCacher.cpp.o.d -o CMakeFiles/OpenSwathMzMLFileCacher.dir/OpenSwathMzMLFileCacher.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathMzMLFileCacher.cpp [ 98%] Linking CXX executable ../../bin/OpenSwathMzMLFileCacher cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenSwathMzMLFileCacher.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/OpenSwathMzMLFileCacher.dir/OpenSwathMzMLFileCacher.cpp.o -o ../../bin/OpenSwathMzMLFileCacher ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target OpenSwathMzMLFileCacher make -f src/utils/CMakeFiles/OpenSwathWorkflow.dir/build.make src/utils/CMakeFiles/OpenSwathWorkflow.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/OpenSwathWorkflow.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/OpenSwathWorkflow.dir/build.make src/utils/CMakeFiles/OpenSwathWorkflow.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Building CXX object src/utils/CMakeFiles/OpenSwathWorkflow.dir/OpenSwathWorkflow.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/OpenSwathWorkflow.dir/OpenSwathWorkflow.cpp.o -MF CMakeFiles/OpenSwathWorkflow.dir/OpenSwathWorkflow.cpp.o.d -o CMakeFiles/OpenSwathWorkflow.dir/OpenSwathWorkflow.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathWorkflow.cpp [ 98%] Linking CXX executable ../../bin/OpenSwathWorkflow cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenSwathWorkflow.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/OpenSwathWorkflow.dir/OpenSwathWorkflow.cpp.o -o ../../bin/OpenSwathWorkflow ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target OpenSwathWorkflow make -f src/utils/CMakeFiles/OpenSwathFileSplitter.dir/build.make src/utils/CMakeFiles/OpenSwathFileSplitter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/OpenSwathFileSplitter.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/OpenSwathFileSplitter.dir/build.make src/utils/CMakeFiles/OpenSwathFileSplitter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Building CXX object src/utils/CMakeFiles/OpenSwathFileSplitter.dir/OpenSwathFileSplitter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/OpenSwathFileSplitter.dir/OpenSwathFileSplitter.cpp.o -MF CMakeFiles/OpenSwathFileSplitter.dir/OpenSwathFileSplitter.cpp.o.d -o CMakeFiles/OpenSwathFileSplitter.dir/OpenSwathFileSplitter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathFileSplitter.cpp [ 98%] Linking CXX executable ../../bin/OpenSwathFileSplitter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenSwathFileSplitter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/OpenSwathFileSplitter.dir/OpenSwathFileSplitter.cpp.o -o ../../bin/OpenSwathFileSplitter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target OpenSwathFileSplitter make -f src/utils/CMakeFiles/OpenSwathRewriteToFeatureXML.dir/build.make src/utils/CMakeFiles/OpenSwathRewriteToFeatureXML.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/OpenSwathRewriteToFeatureXML.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/OpenSwathRewriteToFeatureXML.dir/build.make src/utils/CMakeFiles/OpenSwathRewriteToFeatureXML.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Building CXX object src/utils/CMakeFiles/OpenSwathRewriteToFeatureXML.dir/OpenSwathRewriteToFeatureXML.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/OpenSwathRewriteToFeatureXML.dir/OpenSwathRewriteToFeatureXML.cpp.o -MF CMakeFiles/OpenSwathRewriteToFeatureXML.dir/OpenSwathRewriteToFeatureXML.cpp.o.d -o CMakeFiles/OpenSwathRewriteToFeatureXML.dir/OpenSwathRewriteToFeatureXML.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathRewriteToFeatureXML.cpp [ 98%] Linking CXX executable ../../bin/OpenSwathRewriteToFeatureXML cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenSwathRewriteToFeatureXML.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/OpenSwathRewriteToFeatureXML.dir/OpenSwathRewriteToFeatureXML.cpp.o -o ../../bin/OpenSwathRewriteToFeatureXML ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target OpenSwathRewriteToFeatureXML make -f src/utils/CMakeFiles/MRMTransitionGroupPicker.dir/build.make src/utils/CMakeFiles/MRMTransitionGroupPicker.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MRMTransitionGroupPicker.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MRMTransitionGroupPicker.dir/build.make src/utils/CMakeFiles/MRMTransitionGroupPicker.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Building CXX object src/utils/CMakeFiles/MRMTransitionGroupPicker.dir/MRMTransitionGroupPicker.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/MRMTransitionGroupPicker.dir/MRMTransitionGroupPicker.cpp.o -MF CMakeFiles/MRMTransitionGroupPicker.dir/MRMTransitionGroupPicker.cpp.o.d -o CMakeFiles/MRMTransitionGroupPicker.dir/MRMTransitionGroupPicker.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MRMTransitionGroupPicker.cpp [ 98%] Linking CXX executable ../../bin/MRMTransitionGroupPicker cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/MRMTransitionGroupPicker.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/MRMTransitionGroupPicker.dir/MRMTransitionGroupPicker.cpp.o -o ../../bin/MRMTransitionGroupPicker ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target MRMTransitionGroupPicker make -f src/utils/CMakeFiles/ImageCreator.dir/build.make src/utils/CMakeFiles/ImageCreator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/ImageCreator.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/ImageCreator.dir/build.make src/utils/CMakeFiles/ImageCreator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Building CXX object src/utils/CMakeFiles/ImageCreator.dir/ImageCreator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/include -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT src/utils/CMakeFiles/ImageCreator.dir/ImageCreator.cpp.o -MF CMakeFiles/ImageCreator.dir/ImageCreator.cpp.o.d -o CMakeFiles/ImageCreator.dir/ImageCreator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ImageCreator.cpp [100%] Linking CXX executable ../../bin/ImageCreator cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/ImageCreator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/ImageCreator.dir/ImageCreator.cpp.o -o ../../bin/ImageCreator ../../lib/x86_64-linux-gnu/libOpenMS_GUI.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 /usr/lib/x86_64-linux-gnu/libQt5Svg.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Svg.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Built target ImageCreator make -f src/utils/CMakeFiles/UTILS.dir/build.make src/utils/CMakeFiles/UTILS.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/UTILS.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/UTILS.dir/build.make src/utils/CMakeFiles/UTILS.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/UTILS.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Built target UTILS make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[2]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' # We need to tell the documenter program where the shared data are # in the source tree: share/OpenMS. That is not the install directory! # Also tell the CMake build system that we'll build the docs without # access to a XWindow server. VERBOSE=1 \ OPENMS_DATA_PATH=/build/reproducible-path/openms-2.6.0+cleaned1/share/OpenMS \ HAS_XSERVER=OFF \ dh_auto_build -- doc_minimal cd obj-x86_64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" doc_minimal VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/openms-2.6.0+cleaned1 -B/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 doc_minimal make[3]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/openms-2.6.0+cleaned1 -B/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/CMakeFiles 93 make -f CMakeFiles/Makefile2 doc/CMakeFiles/doc_minimal.dir/all make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/build.make src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/build.make src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 1%] Built target OpenSwathAlgo make -f src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/build.make src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/build.make src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 1%] Built target OpenMS_autogen_timestamp_deps make -f src/openms/CMakeFiles/OpenMS_autogen.dir/build.make src/openms/CMakeFiles/OpenMS_autogen.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS_autogen.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms/CMakeFiles/OpenMS_autogen.dir/build.make src/openms/CMakeFiles/OpenMS_autogen.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms/CMakeFiles/OpenMS_autogen.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 1%] Built target OpenMS_autogen make -f src/openms/CMakeFiles/OpenMS.dir/build.make src/openms/CMakeFiles/OpenMS.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms/CMakeFiles/OpenMS.dir/build.make src/openms/CMakeFiles/OpenMS.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms/CMakeFiles/OpenMS.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 56%] Built target OpenMS make -f src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 56%] Built target OpenMS_GUI_autogen_timestamp_deps make -f src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 56%] Built target OpenMS_GUI_autogen make -f src/openms_gui/CMakeFiles/OpenMS_GUI.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/OpenMS_GUI.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/openms_gui/CMakeFiles/OpenMS_GUI.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target OpenMS_GUI make -f src/utils/CMakeFiles/INIUpdater.dir/build.make src/utils/CMakeFiles/INIUpdater.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/INIUpdater.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/INIUpdater.dir/INIUpdater.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/INIUpdater.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target INIUpdater make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/INIUpdater.dir/build.make src/utils/CMakeFiles/INIUpdater.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/INIUpdater.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target INIUpdater make -f src/utils/CMakeFiles/AccurateMassSearch.dir/build.make src/utils/CMakeFiles/AccurateMassSearch.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/AccurateMassSearch.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/AccurateMassSearch.dir/AccurateMassSearch.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/AccurateMassSearch.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target AccurateMassSearch make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/AccurateMassSearch.dir/build.make src/utils/CMakeFiles/AccurateMassSearch.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/AccurateMassSearch.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target AccurateMassSearch make -f src/utils/CMakeFiles/AssayGeneratorMetabo.dir/build.make src/utils/CMakeFiles/AssayGeneratorMetabo.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/AssayGeneratorMetabo.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/AssayGeneratorMetabo.dir/AssayGeneratorMetabo.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/AssayGeneratorMetabo.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target AssayGeneratorMetabo make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/AssayGeneratorMetabo.dir/build.make src/utils/CMakeFiles/AssayGeneratorMetabo.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/AssayGeneratorMetabo.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target AssayGeneratorMetabo make -f src/utils/CMakeFiles/ClusterMassTraces.dir/build.make src/utils/CMakeFiles/ClusterMassTraces.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/ClusterMassTraces.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/ClusterMassTraces.dir/ClusterMassTraces.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/ClusterMassTraces.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target ClusterMassTraces make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/ClusterMassTraces.dir/build.make src/utils/CMakeFiles/ClusterMassTraces.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/ClusterMassTraces.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target ClusterMassTraces make -f src/utils/CMakeFiles/ClusterMassTracesByPrecursor.dir/build.make src/utils/CMakeFiles/ClusterMassTracesByPrecursor.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/ClusterMassTracesByPrecursor.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/ClusterMassTracesByPrecursor.dir/ClusterMassTracesByPrecursor.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/ClusterMassTracesByPrecursor.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target ClusterMassTracesByPrecursor make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/ClusterMassTracesByPrecursor.dir/build.make src/utils/CMakeFiles/ClusterMassTracesByPrecursor.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/ClusterMassTracesByPrecursor.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target ClusterMassTracesByPrecursor make -f src/utils/CMakeFiles/CVInspector.dir/build.make src/utils/CMakeFiles/CVInspector.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/CVInspector.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/CVInspector.dir/CVInspector.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/CVInspector.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target CVInspector make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/CVInspector.dir/build.make src/utils/CMakeFiles/CVInspector.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/CVInspector.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target CVInspector make -f src/utils/CMakeFiles/DatabaseFilter.dir/build.make src/utils/CMakeFiles/DatabaseFilter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/DatabaseFilter.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/DatabaseFilter.dir/DatabaseFilter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/DatabaseFilter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target DatabaseFilter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/DatabaseFilter.dir/build.make src/utils/CMakeFiles/DatabaseFilter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/DatabaseFilter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 69%] Built target DatabaseFilter make -f src/utils/CMakeFiles/DecoyDatabase.dir/build.make src/utils/CMakeFiles/DecoyDatabase.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/DecoyDatabase.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/DecoyDatabase.dir/DecoyDatabase.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/DecoyDatabase.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target DecoyDatabase make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/DecoyDatabase.dir/build.make src/utils/CMakeFiles/DecoyDatabase.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/DecoyDatabase.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 69%] Built target DecoyDatabase make -f src/utils/CMakeFiles/DeMeanderize.dir/build.make src/utils/CMakeFiles/DeMeanderize.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/DeMeanderize.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/DeMeanderize.dir/DeMeanderize.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/DeMeanderize.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target DeMeanderize make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/DeMeanderize.dir/build.make src/utils/CMakeFiles/DeMeanderize.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/DeMeanderize.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 69%] Built target DeMeanderize make -f src/utils/CMakeFiles/Digestor.dir/build.make src/utils/CMakeFiles/Digestor.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/Digestor.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/Digestor.dir/Digestor.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/Digestor.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target Digestor make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/Digestor.dir/build.make src/utils/CMakeFiles/Digestor.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/Digestor.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 70%] Built target Digestor make -f src/utils/CMakeFiles/DigestorMotif.dir/build.make src/utils/CMakeFiles/DigestorMotif.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/DigestorMotif.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/DigestorMotif.dir/DigestorMotif.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/DigestorMotif.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target DigestorMotif make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/DigestorMotif.dir/build.make src/utils/CMakeFiles/DigestorMotif.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/DigestorMotif.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 70%] Built target DigestorMotif make -f src/utils/CMakeFiles/Epifany.dir/build.make src/utils/CMakeFiles/Epifany.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/Epifany.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/Epifany.dir/Epifany.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/Epifany.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target Epifany make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/Epifany.dir/build.make src/utils/CMakeFiles/Epifany.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/Epifany.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 70%] Built target Epifany make -f src/utils/CMakeFiles/ERPairFinder.dir/build.make src/utils/CMakeFiles/ERPairFinder.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/ERPairFinder.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/ERPairFinder.dir/ERPairFinder.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/ERPairFinder.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target ERPairFinder make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/ERPairFinder.dir/build.make src/utils/CMakeFiles/ERPairFinder.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/ERPairFinder.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 70%] Built target ERPairFinder make -f src/utils/CMakeFiles/FeatureFinderMetaboIdent.dir/build.make src/utils/CMakeFiles/FeatureFinderMetaboIdent.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/FeatureFinderMetaboIdent.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/FeatureFinderMetaboIdent.dir/FeatureFinderMetaboIdent.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/FeatureFinderMetaboIdent.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target FeatureFinderMetaboIdent make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/FeatureFinderMetaboIdent.dir/build.make src/utils/CMakeFiles/FeatureFinderMetaboIdent.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/FeatureFinderMetaboIdent.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 72%] Built target FeatureFinderMetaboIdent make -f src/superhirn/CMakeFiles/SuperHirn.dir/build.make src/superhirn/CMakeFiles/SuperHirn.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/DependInfo.cmake "--color=" Dependencies file "src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmSH.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/compiler_depend.internal". Dependencies file "src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmSHCtrl.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/compiler_depend.internal". Dependencies file "src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/BackgroundControl.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/compiler_depend.internal". Dependencies file "src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/BackgroundIntensityBin.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/compiler_depend.internal". Dependencies file "src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/CentroidData.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/compiler_depend.internal". Dependencies file "src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/CentroidPeak.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/compiler_depend.internal". Dependencies file "src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/ClusteredMS2ConsensusSpectrum.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/compiler_depend.internal". Dependencies file "src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/ConsensusIsotopePattern.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/compiler_depend.internal". Dependencies file "src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/Deisotoper.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/compiler_depend.internal". Dependencies file "src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/FTPeakDetectController.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/compiler_depend.internal". Dependencies file "src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/FeatureLCProfile.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/compiler_depend.internal". Dependencies file "src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/IsotopicDist.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/compiler_depend.internal". Dependencies file "src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/LCElutionPeak.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/compiler_depend.internal". Dependencies file "src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/LCMS.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/compiler_depend.internal". Dependencies file "src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/LCMSCData.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/compiler_depend.internal". Dependencies file "src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS1FeatureMerger.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/compiler_depend.internal". Dependencies file "src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS2ConsensusSpectrum.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/compiler_depend.internal". Dependencies file "src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS2Feature.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/compiler_depend.internal". Dependencies file "src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS2Fragment.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/compiler_depend.internal". Dependencies file "src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS2Info.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/compiler_depend.internal". Dependencies file "src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MSPeak.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/compiler_depend.internal". Dependencies file "src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/ProcessData.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/compiler_depend.internal". Dependencies file "src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/RawData.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/compiler_depend.internal". Dependencies file "src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SHFeature.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/compiler_depend.internal". Dependencies file "src/superhirn/CMakeFiles/SuperHirn.dir/source/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SuperHirnParameters.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target SuperHirn make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/superhirn/CMakeFiles/SuperHirn.dir/build.make src/superhirn/CMakeFiles/SuperHirn.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/superhirn/CMakeFiles/SuperHirn.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 74%] Built target SuperHirn make -f src/utils/CMakeFiles/FeatureFinderSuperHirn.dir/build.make src/utils/CMakeFiles/FeatureFinderSuperHirn.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/FeatureFinderSuperHirn.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/FeatureFinderSuperHirn.dir/FeatureFinderSuperHirn.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/FeatureFinderSuperHirn.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target FeatureFinderSuperHirn make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/FeatureFinderSuperHirn.dir/build.make src/utils/CMakeFiles/FeatureFinderSuperHirn.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/FeatureFinderSuperHirn.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 74%] Built target FeatureFinderSuperHirn make -f src/utils/CMakeFiles/FFEval.dir/build.make src/utils/CMakeFiles/FFEval.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/FFEval.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/FFEval.dir/FFEval.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/FFEval.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target FFEval make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/FFEval.dir/build.make src/utils/CMakeFiles/FFEval.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/FFEval.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 75%] Built target FFEval make -f src/utils/CMakeFiles/FuzzyDiff.dir/build.make src/utils/CMakeFiles/FuzzyDiff.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/FuzzyDiff.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/FuzzyDiff.dir/FuzzyDiff.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/FuzzyDiff.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target FuzzyDiff make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/FuzzyDiff.dir/build.make src/utils/CMakeFiles/FuzzyDiff.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/FuzzyDiff.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 75%] Built target FuzzyDiff make -f src/utils/CMakeFiles/IDDecoyProbability.dir/build.make src/utils/CMakeFiles/IDDecoyProbability.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/IDDecoyProbability.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/IDDecoyProbability.dir/IDDecoyProbability.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/IDDecoyProbability.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target IDDecoyProbability make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/IDDecoyProbability.dir/build.make src/utils/CMakeFiles/IDDecoyProbability.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/IDDecoyProbability.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 75%] Built target IDDecoyProbability make -f src/utils/CMakeFiles/IDExtractor.dir/build.make src/utils/CMakeFiles/IDExtractor.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/IDExtractor.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/IDExtractor.dir/IDExtractor.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/IDExtractor.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target IDExtractor make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/IDExtractor.dir/build.make src/utils/CMakeFiles/IDExtractor.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/IDExtractor.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 75%] Built target IDExtractor make -f src/utils/CMakeFiles/IDMassAccuracy.dir/build.make src/utils/CMakeFiles/IDMassAccuracy.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/IDMassAccuracy.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/IDMassAccuracy.dir/IDMassAccuracy.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/IDMassAccuracy.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target IDMassAccuracy make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/IDMassAccuracy.dir/build.make src/utils/CMakeFiles/IDMassAccuracy.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/IDMassAccuracy.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 75%] Built target IDMassAccuracy make -f src/utils/CMakeFiles/IDScoreSwitcher.dir/build.make src/utils/CMakeFiles/IDScoreSwitcher.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/IDScoreSwitcher.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/IDScoreSwitcher.dir/IDScoreSwitcher.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/IDScoreSwitcher.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target IDScoreSwitcher make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/IDScoreSwitcher.dir/build.make src/utils/CMakeFiles/IDScoreSwitcher.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/IDScoreSwitcher.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 75%] Built target IDScoreSwitcher make -f src/utils/CMakeFiles/IDSplitter.dir/build.make src/utils/CMakeFiles/IDSplitter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/IDSplitter.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/IDSplitter.dir/IDSplitter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/IDSplitter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target IDSplitter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/IDSplitter.dir/build.make src/utils/CMakeFiles/IDSplitter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/IDSplitter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 75%] Built target IDSplitter make -f src/utils/CMakeFiles/LabeledEval.dir/build.make src/utils/CMakeFiles/LabeledEval.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/LabeledEval.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/LabeledEval.dir/LabeledEval.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/LabeledEval.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target LabeledEval make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/LabeledEval.dir/build.make src/utils/CMakeFiles/LabeledEval.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/LabeledEval.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 75%] Built target LabeledEval make -f src/utils/CMakeFiles/MassCalculator.dir/build.make src/utils/CMakeFiles/MassCalculator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MassCalculator.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/MassCalculator.dir/MassCalculator.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MassCalculator.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MassCalculator make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MassCalculator.dir/build.make src/utils/CMakeFiles/MassCalculator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/MassCalculator.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 75%] Built target MassCalculator make -f src/utils/CMakeFiles/MetaboliteAdductDecharger.dir/build.make src/utils/CMakeFiles/MetaboliteAdductDecharger.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MetaboliteAdductDecharger.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/MetaboliteAdductDecharger.dir/MetaboliteAdductDecharger.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MetaboliteAdductDecharger.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MetaboliteAdductDecharger make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MetaboliteAdductDecharger.dir/build.make src/utils/CMakeFiles/MetaboliteAdductDecharger.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/MetaboliteAdductDecharger.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 76%] Built target MetaboliteAdductDecharger make -f src/utils/CMakeFiles/MetaboliteSpectralMatcher.dir/build.make src/utils/CMakeFiles/MetaboliteSpectralMatcher.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MetaboliteSpectralMatcher.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/MetaboliteSpectralMatcher.dir/MetaboliteSpectralMatcher.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MetaboliteSpectralMatcher.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MetaboliteSpectralMatcher make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MetaboliteSpectralMatcher.dir/build.make src/utils/CMakeFiles/MetaboliteSpectralMatcher.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/MetaboliteSpectralMatcher.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 76%] Built target MetaboliteSpectralMatcher make -f src/utils/CMakeFiles/MetaProSIP.dir/build.make src/utils/CMakeFiles/MetaProSIP.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MetaProSIP.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/MetaProSIP.dir/MetaProSIP.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MetaProSIP.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MetaProSIP make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MetaProSIP.dir/build.make src/utils/CMakeFiles/MetaProSIP.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/MetaProSIP.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 76%] Built target MetaProSIP make -f src/utils/CMakeFiles/MRMPairFinder.dir/build.make src/utils/CMakeFiles/MRMPairFinder.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MRMPairFinder.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/MRMPairFinder.dir/MRMPairFinder.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MRMPairFinder.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MRMPairFinder make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MRMPairFinder.dir/build.make src/utils/CMakeFiles/MRMPairFinder.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/MRMPairFinder.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 76%] Built target MRMPairFinder make -f src/utils/CMakeFiles/MSFraggerAdapter.dir/build.make src/utils/CMakeFiles/MSFraggerAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MSFraggerAdapter.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/MSFraggerAdapter.dir/MSFraggerAdapter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MSFraggerAdapter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MSFraggerAdapter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MSFraggerAdapter.dir/build.make src/utils/CMakeFiles/MSFraggerAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/MSFraggerAdapter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 76%] Built target MSFraggerAdapter make -f src/utils/CMakeFiles/MSSimulator.dir/build.make src/utils/CMakeFiles/MSSimulator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MSSimulator.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/MSSimulator.dir/MSSimulator.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MSSimulator.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MSSimulator make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MSSimulator.dir/build.make src/utils/CMakeFiles/MSSimulator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/MSSimulator.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 76%] Built target MSSimulator make -f src/utils/CMakeFiles/MSstatsConverter.dir/build.make src/utils/CMakeFiles/MSstatsConverter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MSstatsConverter.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/MSstatsConverter.dir/MSstatsConverter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MSstatsConverter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MSstatsConverter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MSstatsConverter.dir/build.make src/utils/CMakeFiles/MSstatsConverter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/MSstatsConverter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 77%] Built target MSstatsConverter make -f src/utils/CMakeFiles/MultiplexResolver.dir/build.make src/utils/CMakeFiles/MultiplexResolver.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MultiplexResolver.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/MultiplexResolver.dir/MultiplexResolver.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MultiplexResolver.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MultiplexResolver make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MultiplexResolver.dir/build.make src/utils/CMakeFiles/MultiplexResolver.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/MultiplexResolver.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 77%] Built target MultiplexResolver make -f src/utils/CMakeFiles/MzMLSplitter.dir/build.make src/utils/CMakeFiles/MzMLSplitter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MzMLSplitter.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/MzMLSplitter.dir/MzMLSplitter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MzMLSplitter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MzMLSplitter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MzMLSplitter.dir/build.make src/utils/CMakeFiles/MzMLSplitter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/MzMLSplitter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 77%] Built target MzMLSplitter make -f src/utils/CMakeFiles/NovorAdapter.dir/build.make src/utils/CMakeFiles/NovorAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/NovorAdapter.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/NovorAdapter.dir/NovorAdapter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/NovorAdapter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target NovorAdapter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/NovorAdapter.dir/build.make src/utils/CMakeFiles/NovorAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/NovorAdapter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 77%] Built target NovorAdapter make -f src/utils/CMakeFiles/NucleicAcidSearchEngine.dir/build.make src/utils/CMakeFiles/NucleicAcidSearchEngine.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/NucleicAcidSearchEngine.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/NucleicAcidSearchEngine.dir/NucleicAcidSearchEngine.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/NucleicAcidSearchEngine.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target NucleicAcidSearchEngine make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/NucleicAcidSearchEngine.dir/build.make src/utils/CMakeFiles/NucleicAcidSearchEngine.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/NucleicAcidSearchEngine.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 77%] Built target NucleicAcidSearchEngine make -f src/utils/CMakeFiles/OpenMSInfo.dir/build.make src/utils/CMakeFiles/OpenMSInfo.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/OpenMSInfo.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/OpenMSInfo.dir/OpenMSInfo.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/OpenMSInfo.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target OpenMSInfo make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/OpenMSInfo.dir/build.make src/utils/CMakeFiles/OpenMSInfo.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/OpenMSInfo.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 77%] Built target OpenMSInfo make -f src/utils/CMakeFiles/PeakPickerIterative.dir/build.make src/utils/CMakeFiles/PeakPickerIterative.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/PeakPickerIterative.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/PeakPickerIterative.dir/PeakPickerIterative.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/PeakPickerIterative.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target PeakPickerIterative make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/PeakPickerIterative.dir/build.make src/utils/CMakeFiles/PeakPickerIterative.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/PeakPickerIterative.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 77%] Built target PeakPickerIterative make -f src/utils/CMakeFiles/PSMFeatureExtractor.dir/build.make src/utils/CMakeFiles/PSMFeatureExtractor.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/PSMFeatureExtractor.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/PSMFeatureExtractor.dir/PSMFeatureExtractor.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/PSMFeatureExtractor.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target PSMFeatureExtractor make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/PSMFeatureExtractor.dir/build.make src/utils/CMakeFiles/PSMFeatureExtractor.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/PSMFeatureExtractor.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 77%] Built target PSMFeatureExtractor make -f src/utils/CMakeFiles/QCCalculator.dir/build.make src/utils/CMakeFiles/QCCalculator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCCalculator.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/QCCalculator.dir/QCCalculator.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCCalculator.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target QCCalculator make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/QCCalculator.dir/build.make src/utils/CMakeFiles/QCCalculator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/QCCalculator.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 77%] Built target QCCalculator make -f src/utils/CMakeFiles/QCEmbedder.dir/build.make src/utils/CMakeFiles/QCEmbedder.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCEmbedder.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/QCEmbedder.dir/QCEmbedder.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCEmbedder.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target QCEmbedder make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/QCEmbedder.dir/build.make src/utils/CMakeFiles/QCEmbedder.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/QCEmbedder.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 78%] Built target QCEmbedder make -f src/utils/CMakeFiles/QCExporter.dir/build.make src/utils/CMakeFiles/QCExporter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCExporter.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/QCExporter.dir/QCExporter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCExporter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target QCExporter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/QCExporter.dir/build.make src/utils/CMakeFiles/QCExporter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/QCExporter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 78%] Built target QCExporter make -f src/utils/CMakeFiles/QCExtractor.dir/build.make src/utils/CMakeFiles/QCExtractor.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCExtractor.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/QCExtractor.dir/QCExtractor.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCExtractor.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target QCExtractor make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/QCExtractor.dir/build.make src/utils/CMakeFiles/QCExtractor.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/QCExtractor.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 78%] Built target QCExtractor make -f src/utils/CMakeFiles/QCImporter.dir/build.make src/utils/CMakeFiles/QCImporter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCImporter.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/QCImporter.dir/QCImporter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCImporter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target QCImporter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/QCImporter.dir/build.make src/utils/CMakeFiles/QCImporter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/QCImporter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 78%] Built target QCImporter make -f src/utils/CMakeFiles/QCMerger.dir/build.make src/utils/CMakeFiles/QCMerger.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCMerger.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/QCMerger.dir/QCMerger.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCMerger.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target QCMerger make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/QCMerger.dir/build.make src/utils/CMakeFiles/QCMerger.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/QCMerger.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 78%] Built target QCMerger make -f src/utils/CMakeFiles/QCShrinker.dir/build.make src/utils/CMakeFiles/QCShrinker.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCShrinker.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/QCShrinker.dir/QCShrinker.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCShrinker.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target QCShrinker make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/QCShrinker.dir/build.make src/utils/CMakeFiles/QCShrinker.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/QCShrinker.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 78%] Built target QCShrinker make -f src/utils/CMakeFiles/ProteomicsLFQ.dir/build.make src/utils/CMakeFiles/ProteomicsLFQ.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/ProteomicsLFQ.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/ProteomicsLFQ.dir/ProteomicsLFQ.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/ProteomicsLFQ.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target ProteomicsLFQ make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/ProteomicsLFQ.dir/build.make src/utils/CMakeFiles/ProteomicsLFQ.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/ProteomicsLFQ.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 78%] Built target ProteomicsLFQ make -f src/utils/CMakeFiles/RNADigestor.dir/build.make src/utils/CMakeFiles/RNADigestor.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/RNADigestor.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/RNADigestor.dir/RNADigestor.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/RNADigestor.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target RNADigestor make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/RNADigestor.dir/build.make src/utils/CMakeFiles/RNADigestor.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/RNADigestor.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 78%] Built target RNADigestor make -f src/utils/CMakeFiles/RNAMassCalculator.dir/build.make src/utils/CMakeFiles/RNAMassCalculator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/RNAMassCalculator.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/RNAMassCalculator.dir/RNAMassCalculator.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/RNAMassCalculator.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target RNAMassCalculator make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/RNAMassCalculator.dir/build.make src/utils/CMakeFiles/RNAMassCalculator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/RNAMassCalculator.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 78%] Built target RNAMassCalculator make -f src/utils/CMakeFiles/RNPxlXICFilter.dir/build.make src/utils/CMakeFiles/RNPxlXICFilter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/RNPxlXICFilter.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/RNPxlXICFilter.dir/RNPxlXICFilter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/RNPxlXICFilter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target RNPxlXICFilter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/RNPxlXICFilter.dir/build.make src/utils/CMakeFiles/RNPxlXICFilter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/RNPxlXICFilter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 78%] Built target RNPxlXICFilter make -f src/utils/CMakeFiles/RNPxlSearch.dir/build.make src/utils/CMakeFiles/RNPxlSearch.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/RNPxlSearch.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/RNPxlSearch.dir/RNPxlSearch.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/RNPxlSearch.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target RNPxlSearch make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/RNPxlSearch.dir/build.make src/utils/CMakeFiles/RNPxlSearch.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/RNPxlSearch.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 78%] Built target RNPxlSearch make -f src/utils/CMakeFiles/RTEvaluation.dir/build.make src/utils/CMakeFiles/RTEvaluation.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/RTEvaluation.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/RTEvaluation.dir/RTEvaluation.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/RTEvaluation.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target RTEvaluation make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/RTEvaluation.dir/build.make src/utils/CMakeFiles/RTEvaluation.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/RTEvaluation.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 78%] Built target RTEvaluation make -f src/utils/CMakeFiles/SemanticValidator.dir/build.make src/utils/CMakeFiles/SemanticValidator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SemanticValidator.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/SemanticValidator.dir/SemanticValidator.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SemanticValidator.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target SemanticValidator make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/SemanticValidator.dir/build.make src/utils/CMakeFiles/SemanticValidator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/SemanticValidator.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 78%] Built target SemanticValidator make -f src/utils/CMakeFiles/SequenceCoverageCalculator.dir/build.make src/utils/CMakeFiles/SequenceCoverageCalculator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SequenceCoverageCalculator.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/SequenceCoverageCalculator.dir/SequenceCoverageCalculator.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SequenceCoverageCalculator.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target SequenceCoverageCalculator make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/SequenceCoverageCalculator.dir/build.make src/utils/CMakeFiles/SequenceCoverageCalculator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/SequenceCoverageCalculator.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 78%] Built target SequenceCoverageCalculator make -f src/utils/CMakeFiles/SimpleSearchEngine.dir/build.make src/utils/CMakeFiles/SimpleSearchEngine.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SimpleSearchEngine.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/SimpleSearchEngine.dir/SimpleSearchEngine.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SimpleSearchEngine.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target SimpleSearchEngine make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/SimpleSearchEngine.dir/build.make src/utils/CMakeFiles/SimpleSearchEngine.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/SimpleSearchEngine.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 78%] Built target SimpleSearchEngine make -f src/utils/CMakeFiles/SiriusAdapter.dir/build.make src/utils/CMakeFiles/SiriusAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SiriusAdapter.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/SiriusAdapter.dir/SiriusAdapter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SiriusAdapter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target SiriusAdapter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/SiriusAdapter.dir/build.make src/utils/CMakeFiles/SiriusAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/SiriusAdapter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 78%] Built target SiriusAdapter make -f src/utils/CMakeFiles/SpecLibCreator.dir/build.make src/utils/CMakeFiles/SpecLibCreator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SpecLibCreator.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/SpecLibCreator.dir/SpecLibCreator.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SpecLibCreator.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target SpecLibCreator make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/SpecLibCreator.dir/build.make src/utils/CMakeFiles/SpecLibCreator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/SpecLibCreator.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 79%] Built target SpecLibCreator make -f src/utils/CMakeFiles/SpectraSTSearchAdapter.dir/build.make src/utils/CMakeFiles/SpectraSTSearchAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SpectraSTSearchAdapter.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/SpectraSTSearchAdapter.dir/SpectraSTSearchAdapter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SpectraSTSearchAdapter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target SpectraSTSearchAdapter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/SpectraSTSearchAdapter.dir/build.make src/utils/CMakeFiles/SpectraSTSearchAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/SpectraSTSearchAdapter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 79%] Built target SpectraSTSearchAdapter make -f src/utils/CMakeFiles/StaticModification.dir/build.make src/utils/CMakeFiles/StaticModification.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/StaticModification.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/StaticModification.dir/StaticModification.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/StaticModification.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target StaticModification make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/StaticModification.dir/build.make src/utils/CMakeFiles/StaticModification.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/StaticModification.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target StaticModification make -f src/utils/CMakeFiles/SvmTheoreticalSpectrumGeneratorTrainer.dir/build.make src/utils/CMakeFiles/SvmTheoreticalSpectrumGeneratorTrainer.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SvmTheoreticalSpectrumGeneratorTrainer.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/SvmTheoreticalSpectrumGeneratorTrainer.dir/SvmTheoreticalSpectrumGeneratorTrainer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SvmTheoreticalSpectrumGeneratorTrainer.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target SvmTheoreticalSpectrumGeneratorTrainer make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/SvmTheoreticalSpectrumGeneratorTrainer.dir/build.make src/utils/CMakeFiles/SvmTheoreticalSpectrumGeneratorTrainer.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/SvmTheoreticalSpectrumGeneratorTrainer.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target SvmTheoreticalSpectrumGeneratorTrainer make -f src/utils/CMakeFiles/TICCalculator.dir/build.make src/utils/CMakeFiles/TICCalculator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/TICCalculator.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/TICCalculator.dir/TICCalculator.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/TICCalculator.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target TICCalculator make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/TICCalculator.dir/build.make src/utils/CMakeFiles/TICCalculator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/TICCalculator.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target TICCalculator make -f src/utils/CMakeFiles/TransformationEvaluation.dir/build.make src/utils/CMakeFiles/TransformationEvaluation.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/TransformationEvaluation.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/TransformationEvaluation.dir/TransformationEvaluation.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/TransformationEvaluation.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target TransformationEvaluation make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/TransformationEvaluation.dir/build.make src/utils/CMakeFiles/TransformationEvaluation.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/TransformationEvaluation.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target TransformationEvaluation make -f src/utils/CMakeFiles/XMLValidator.dir/build.make src/utils/CMakeFiles/XMLValidator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/XMLValidator.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/XMLValidator.dir/XMLValidator.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/XMLValidator.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target XMLValidator make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/XMLValidator.dir/build.make src/utils/CMakeFiles/XMLValidator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/XMLValidator.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target XMLValidator make -f src/utils/CMakeFiles/TargetedFileConverter.dir/build.make src/utils/CMakeFiles/TargetedFileConverter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/TargetedFileConverter.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/TargetedFileConverter.dir/TargetedFileConverter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/TargetedFileConverter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target TargetedFileConverter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/TargetedFileConverter.dir/build.make src/utils/CMakeFiles/TargetedFileConverter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/TargetedFileConverter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target TargetedFileConverter make -f src/utils/CMakeFiles/OpenSwathDIAPreScoring.dir/build.make src/utils/CMakeFiles/OpenSwathDIAPreScoring.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/OpenSwathDIAPreScoring.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/OpenSwathDIAPreScoring.dir/OpenSwathDIAPreScoring.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/OpenSwathDIAPreScoring.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target OpenSwathDIAPreScoring make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/OpenSwathDIAPreScoring.dir/build.make src/utils/CMakeFiles/OpenSwathDIAPreScoring.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/OpenSwathDIAPreScoring.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target OpenSwathDIAPreScoring make -f src/utils/CMakeFiles/OpenSwathMzMLFileCacher.dir/build.make src/utils/CMakeFiles/OpenSwathMzMLFileCacher.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/OpenSwathMzMLFileCacher.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/OpenSwathMzMLFileCacher.dir/OpenSwathMzMLFileCacher.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/OpenSwathMzMLFileCacher.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target OpenSwathMzMLFileCacher make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/OpenSwathMzMLFileCacher.dir/build.make src/utils/CMakeFiles/OpenSwathMzMLFileCacher.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/OpenSwathMzMLFileCacher.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target OpenSwathMzMLFileCacher make -f src/utils/CMakeFiles/OpenSwathWorkflow.dir/build.make src/utils/CMakeFiles/OpenSwathWorkflow.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/OpenSwathWorkflow.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/OpenSwathWorkflow.dir/OpenSwathWorkflow.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/OpenSwathWorkflow.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target OpenSwathWorkflow make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/OpenSwathWorkflow.dir/build.make src/utils/CMakeFiles/OpenSwathWorkflow.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/OpenSwathWorkflow.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target OpenSwathWorkflow make -f src/utils/CMakeFiles/OpenSwathFileSplitter.dir/build.make src/utils/CMakeFiles/OpenSwathFileSplitter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/OpenSwathFileSplitter.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/OpenSwathFileSplitter.dir/OpenSwathFileSplitter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/OpenSwathFileSplitter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target OpenSwathFileSplitter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/OpenSwathFileSplitter.dir/build.make src/utils/CMakeFiles/OpenSwathFileSplitter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/OpenSwathFileSplitter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target OpenSwathFileSplitter make -f src/utils/CMakeFiles/OpenSwathRewriteToFeatureXML.dir/build.make src/utils/CMakeFiles/OpenSwathRewriteToFeatureXML.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/OpenSwathRewriteToFeatureXML.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/OpenSwathRewriteToFeatureXML.dir/OpenSwathRewriteToFeatureXML.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/OpenSwathRewriteToFeatureXML.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target OpenSwathRewriteToFeatureXML make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/OpenSwathRewriteToFeatureXML.dir/build.make src/utils/CMakeFiles/OpenSwathRewriteToFeatureXML.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/OpenSwathRewriteToFeatureXML.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target OpenSwathRewriteToFeatureXML make -f src/utils/CMakeFiles/MRMTransitionGroupPicker.dir/build.make src/utils/CMakeFiles/MRMTransitionGroupPicker.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MRMTransitionGroupPicker.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/MRMTransitionGroupPicker.dir/MRMTransitionGroupPicker.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MRMTransitionGroupPicker.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MRMTransitionGroupPicker make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MRMTransitionGroupPicker.dir/build.make src/utils/CMakeFiles/MRMTransitionGroupPicker.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/MRMTransitionGroupPicker.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target MRMTransitionGroupPicker make -f src/utils/CMakeFiles/ImageCreator.dir/build.make src/utils/CMakeFiles/ImageCreator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/ImageCreator.dir/DependInfo.cmake "--color=" Dependencies file "src/utils/CMakeFiles/ImageCreator.dir/ImageCreator.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/ImageCreator.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target ImageCreator make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/ImageCreator.dir/build.make src/utils/CMakeFiles/ImageCreator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/ImageCreator.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 81%] Built target ImageCreator make -f src/utils/CMakeFiles/UTILS.dir/build.make src/utils/CMakeFiles/UTILS.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/UTILS.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/UTILS.dir/build.make src/utils/CMakeFiles/UTILS.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/utils/CMakeFiles/UTILS.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 81%] Built target UTILS make -f src/topp/CMakeFiles/Resampler.dir/build.make src/topp/CMakeFiles/Resampler.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/Resampler.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/Resampler.dir/Resampler.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/Resampler.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target Resampler make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/Resampler.dir/build.make src/topp/CMakeFiles/Resampler.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/Resampler.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 81%] Built target Resampler make -f src/topp/CMakeFiles/BaselineFilter.dir/build.make src/topp/CMakeFiles/BaselineFilter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/BaselineFilter.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/BaselineFilter.dir/BaselineFilter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/BaselineFilter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target BaselineFilter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/BaselineFilter.dir/build.make src/topp/CMakeFiles/BaselineFilter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/BaselineFilter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 81%] Built target BaselineFilter make -f src/topp/CMakeFiles/CometAdapter.dir/build.make src/topp/CMakeFiles/CometAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/CometAdapter.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/CometAdapter.dir/CometAdapter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/CometAdapter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target CometAdapter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/CometAdapter.dir/build.make src/topp/CMakeFiles/CometAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/CometAdapter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target CometAdapter make -f src/topp/CMakeFiles/CompNovo.dir/build.make src/topp/CMakeFiles/CompNovo.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/CompNovo.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/CompNovo.dir/CompNovo.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/CompNovo.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target CompNovo make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/CompNovo.dir/build.make src/topp/CMakeFiles/CompNovo.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/CompNovo.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target CompNovo make -f src/topp/CMakeFiles/CompNovoCID.dir/build.make src/topp/CMakeFiles/CompNovoCID.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/CompNovoCID.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/CompNovoCID.dir/CompNovoCID.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/CompNovoCID.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target CompNovoCID make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/CompNovoCID.dir/build.make src/topp/CMakeFiles/CompNovoCID.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/CompNovoCID.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target CompNovoCID make -f src/topp/CMakeFiles/ConsensusID.dir/build.make src/topp/CMakeFiles/ConsensusID.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ConsensusID.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/ConsensusID.dir/ConsensusID.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ConsensusID.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target ConsensusID make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/ConsensusID.dir/build.make src/topp/CMakeFiles/ConsensusID.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/ConsensusID.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target ConsensusID make -f src/topp/CMakeFiles/ConsensusMapNormalizer.dir/build.make src/topp/CMakeFiles/ConsensusMapNormalizer.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ConsensusMapNormalizer.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/ConsensusMapNormalizer.dir/ConsensusMapNormalizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ConsensusMapNormalizer.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target ConsensusMapNormalizer make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/ConsensusMapNormalizer.dir/build.make src/topp/CMakeFiles/ConsensusMapNormalizer.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/ConsensusMapNormalizer.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target ConsensusMapNormalizer make -f src/topp/CMakeFiles/CruxAdapter.dir/build.make src/topp/CMakeFiles/CruxAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/CruxAdapter.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/CruxAdapter.dir/CruxAdapter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/CruxAdapter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target CruxAdapter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/CruxAdapter.dir/build.make src/topp/CMakeFiles/CruxAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/CruxAdapter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target CruxAdapter make -f src/topp/CMakeFiles/DatabaseSuitability.dir/build.make src/topp/CMakeFiles/DatabaseSuitability.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/DatabaseSuitability.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/DatabaseSuitability.dir/DatabaseSuitability.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/DatabaseSuitability.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target DatabaseSuitability make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/DatabaseSuitability.dir/build.make src/topp/CMakeFiles/DatabaseSuitability.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/DatabaseSuitability.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target DatabaseSuitability make -f src/topp/CMakeFiles/Decharger.dir/build.make src/topp/CMakeFiles/Decharger.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/Decharger.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/Decharger.dir/Decharger.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/Decharger.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target Decharger make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/Decharger.dir/build.make src/topp/CMakeFiles/Decharger.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/Decharger.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target Decharger make -f src/topp/CMakeFiles/DTAExtractor.dir/build.make src/topp/CMakeFiles/DTAExtractor.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/DTAExtractor.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/DTAExtractor.dir/DTAExtractor.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/DTAExtractor.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target DTAExtractor make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/DTAExtractor.dir/build.make src/topp/CMakeFiles/DTAExtractor.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/DTAExtractor.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target DTAExtractor make -f src/topp/CMakeFiles/EICExtractor.dir/build.make src/topp/CMakeFiles/EICExtractor.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/EICExtractor.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/EICExtractor.dir/EICExtractor.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/EICExtractor.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target EICExtractor make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/EICExtractor.dir/build.make src/topp/CMakeFiles/EICExtractor.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/EICExtractor.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target EICExtractor make -f src/topp/CMakeFiles/ExternalCalibration.dir/build.make src/topp/CMakeFiles/ExternalCalibration.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ExternalCalibration.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/ExternalCalibration.dir/ExternalCalibration.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ExternalCalibration.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target ExternalCalibration make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/ExternalCalibration.dir/build.make src/topp/CMakeFiles/ExternalCalibration.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/ExternalCalibration.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target ExternalCalibration make -f src/topp/CMakeFiles/FalseDiscoveryRate.dir/build.make src/topp/CMakeFiles/FalseDiscoveryRate.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FalseDiscoveryRate.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/FalseDiscoveryRate.dir/FalseDiscoveryRate.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FalseDiscoveryRate.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target FalseDiscoveryRate make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FalseDiscoveryRate.dir/build.make src/topp/CMakeFiles/FalseDiscoveryRate.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/FalseDiscoveryRate.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target FalseDiscoveryRate make -f src/topp/CMakeFiles/FeatureFinderCentroided.dir/build.make src/topp/CMakeFiles/FeatureFinderCentroided.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureFinderCentroided.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/FeatureFinderCentroided.dir/FeatureFinderCentroided.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureFinderCentroided.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target FeatureFinderCentroided make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureFinderCentroided.dir/build.make src/topp/CMakeFiles/FeatureFinderCentroided.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/FeatureFinderCentroided.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target FeatureFinderCentroided make -f src/topp/CMakeFiles/FeatureFinderIdentification.dir/build.make src/topp/CMakeFiles/FeatureFinderIdentification.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureFinderIdentification.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/FeatureFinderIdentification.dir/FeatureFinderIdentification.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureFinderIdentification.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target FeatureFinderIdentification make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureFinderIdentification.dir/build.make src/topp/CMakeFiles/FeatureFinderIdentification.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/FeatureFinderIdentification.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target FeatureFinderIdentification make -f src/topp/CMakeFiles/FeatureFinderIsotopeWavelet.dir/build.make src/topp/CMakeFiles/FeatureFinderIsotopeWavelet.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureFinderIsotopeWavelet.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/FeatureFinderIsotopeWavelet.dir/FeatureFinderIsotopeWavelet.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureFinderIsotopeWavelet.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target FeatureFinderIsotopeWavelet make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureFinderIsotopeWavelet.dir/build.make src/topp/CMakeFiles/FeatureFinderIsotopeWavelet.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/FeatureFinderIsotopeWavelet.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target FeatureFinderIsotopeWavelet make -f src/topp/CMakeFiles/FeatureFinderMetabo.dir/build.make src/topp/CMakeFiles/FeatureFinderMetabo.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureFinderMetabo.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/FeatureFinderMetabo.dir/FeatureFinderMetabo.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureFinderMetabo.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target FeatureFinderMetabo make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureFinderMetabo.dir/build.make src/topp/CMakeFiles/FeatureFinderMetabo.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/FeatureFinderMetabo.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target FeatureFinderMetabo make -f src/topp/CMakeFiles/FeatureFinderMRM.dir/build.make src/topp/CMakeFiles/FeatureFinderMRM.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureFinderMRM.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/FeatureFinderMRM.dir/FeatureFinderMRM.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureFinderMRM.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target FeatureFinderMRM make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureFinderMRM.dir/build.make src/topp/CMakeFiles/FeatureFinderMRM.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/FeatureFinderMRM.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target FeatureFinderMRM make -f src/topp/CMakeFiles/FeatureFinderMultiplex.dir/build.make src/topp/CMakeFiles/FeatureFinderMultiplex.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureFinderMultiplex.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/FeatureFinderMultiplex.dir/FeatureFinderMultiplex.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureFinderMultiplex.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target FeatureFinderMultiplex make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureFinderMultiplex.dir/build.make src/topp/CMakeFiles/FeatureFinderMultiplex.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/FeatureFinderMultiplex.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target FeatureFinderMultiplex make -f src/topp/CMakeFiles/FeatureLinkerLabeled.dir/build.make src/topp/CMakeFiles/FeatureLinkerLabeled.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureLinkerLabeled.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/FeatureLinkerLabeled.dir/FeatureLinkerLabeled.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureLinkerLabeled.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target FeatureLinkerLabeled make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureLinkerLabeled.dir/build.make src/topp/CMakeFiles/FeatureLinkerLabeled.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/FeatureLinkerLabeled.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target FeatureLinkerLabeled make -f src/topp/CMakeFiles/FeatureLinkerUnlabeled.dir/build.make src/topp/CMakeFiles/FeatureLinkerUnlabeled.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureLinkerUnlabeled.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/FeatureLinkerUnlabeled.dir/FeatureLinkerUnlabeled.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureLinkerUnlabeled.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target FeatureLinkerUnlabeled make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureLinkerUnlabeled.dir/build.make src/topp/CMakeFiles/FeatureLinkerUnlabeled.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/FeatureLinkerUnlabeled.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target FeatureLinkerUnlabeled make -f src/topp/CMakeFiles/FeatureLinkerUnlabeledKD.dir/build.make src/topp/CMakeFiles/FeatureLinkerUnlabeledKD.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureLinkerUnlabeledKD.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/FeatureLinkerUnlabeledKD.dir/FeatureLinkerUnlabeledKD.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureLinkerUnlabeledKD.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target FeatureLinkerUnlabeledKD make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureLinkerUnlabeledKD.dir/build.make src/topp/CMakeFiles/FeatureLinkerUnlabeledKD.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/FeatureLinkerUnlabeledKD.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target FeatureLinkerUnlabeledKD make -f src/topp/CMakeFiles/FeatureLinkerUnlabeledQT.dir/build.make src/topp/CMakeFiles/FeatureLinkerUnlabeledQT.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureLinkerUnlabeledQT.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/FeatureLinkerUnlabeledQT.dir/FeatureLinkerUnlabeledQT.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureLinkerUnlabeledQT.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target FeatureLinkerUnlabeledQT make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureLinkerUnlabeledQT.dir/build.make src/topp/CMakeFiles/FeatureLinkerUnlabeledQT.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/FeatureLinkerUnlabeledQT.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 83%] Built target FeatureLinkerUnlabeledQT make -f src/topp/CMakeFiles/FidoAdapter.dir/build.make src/topp/CMakeFiles/FidoAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FidoAdapter.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/FidoAdapter.dir/FidoAdapter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FidoAdapter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target FidoAdapter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FidoAdapter.dir/build.make src/topp/CMakeFiles/FidoAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/FidoAdapter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 83%] Built target FidoAdapter make -f src/topp/CMakeFiles/FileConverter.dir/build.make src/topp/CMakeFiles/FileConverter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FileConverter.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/FileConverter.dir/FileConverter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FileConverter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target FileConverter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FileConverter.dir/build.make src/topp/CMakeFiles/FileConverter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/FileConverter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 83%] Built target FileConverter make -f src/topp/CMakeFiles/FileFilter.dir/build.make src/topp/CMakeFiles/FileFilter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FileFilter.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/FileFilter.dir/FileFilter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FileFilter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target FileFilter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FileFilter.dir/build.make src/topp/CMakeFiles/FileFilter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/FileFilter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 83%] Built target FileFilter make -f src/topp/CMakeFiles/FileInfo.dir/build.make src/topp/CMakeFiles/FileInfo.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FileInfo.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/FileInfo.dir/FileInfo.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FileInfo.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target FileInfo make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FileInfo.dir/build.make src/topp/CMakeFiles/FileInfo.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/FileInfo.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 83%] Built target FileInfo make -f src/topp/CMakeFiles/FileMerger.dir/build.make src/topp/CMakeFiles/FileMerger.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FileMerger.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/FileMerger.dir/FileMerger.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FileMerger.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target FileMerger make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FileMerger.dir/build.make src/topp/CMakeFiles/FileMerger.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/FileMerger.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 83%] Built target FileMerger make -f src/topp/CMakeFiles/GenericWrapper.dir/build.make src/topp/CMakeFiles/GenericWrapper.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/GenericWrapper.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/GenericWrapper.dir/GenericWrapper.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/GenericWrapper.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target GenericWrapper make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/GenericWrapper.dir/build.make src/topp/CMakeFiles/GenericWrapper.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/GenericWrapper.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 83%] Built target GenericWrapper make -f src/topp/CMakeFiles/GNPSExport.dir/build.make src/topp/CMakeFiles/GNPSExport.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/GNPSExport.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/GNPSExport.dir/GNPSExport.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/GNPSExport.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target GNPSExport make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/GNPSExport.dir/build.make src/topp/CMakeFiles/GNPSExport.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/GNPSExport.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Built target GNPSExport make -f src/topp/CMakeFiles/HighResPrecursorMassCorrector.dir/build.make src/topp/CMakeFiles/HighResPrecursorMassCorrector.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/HighResPrecursorMassCorrector.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/HighResPrecursorMassCorrector.dir/HighResPrecursorMassCorrector.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/HighResPrecursorMassCorrector.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target HighResPrecursorMassCorrector make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/HighResPrecursorMassCorrector.dir/build.make src/topp/CMakeFiles/HighResPrecursorMassCorrector.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/HighResPrecursorMassCorrector.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Built target HighResPrecursorMassCorrector make -f src/topp/CMakeFiles/IDConflictResolver.dir/build.make src/topp/CMakeFiles/IDConflictResolver.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDConflictResolver.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/IDConflictResolver.dir/IDConflictResolver.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDConflictResolver.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target IDConflictResolver make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IDConflictResolver.dir/build.make src/topp/CMakeFiles/IDConflictResolver.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/IDConflictResolver.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Built target IDConflictResolver make -f src/topp/CMakeFiles/IDFileConverter.dir/build.make src/topp/CMakeFiles/IDFileConverter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDFileConverter.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/IDFileConverter.dir/IDFileConverter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDFileConverter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target IDFileConverter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IDFileConverter.dir/build.make src/topp/CMakeFiles/IDFileConverter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/IDFileConverter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Built target IDFileConverter make -f src/topp/CMakeFiles/IDFilter.dir/build.make src/topp/CMakeFiles/IDFilter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDFilter.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/IDFilter.dir/IDFilter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDFilter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target IDFilter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IDFilter.dir/build.make src/topp/CMakeFiles/IDFilter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/IDFilter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Built target IDFilter make -f src/topp/CMakeFiles/IDMapper.dir/build.make src/topp/CMakeFiles/IDMapper.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDMapper.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/IDMapper.dir/IDMapper.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDMapper.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target IDMapper make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IDMapper.dir/build.make src/topp/CMakeFiles/IDMapper.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/IDMapper.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Built target IDMapper make -f src/topp/CMakeFiles/IDMerger.dir/build.make src/topp/CMakeFiles/IDMerger.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDMerger.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/IDMerger.dir/IDMerger.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDMerger.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target IDMerger make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IDMerger.dir/build.make src/topp/CMakeFiles/IDMerger.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/IDMerger.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Built target IDMerger make -f src/topp/CMakeFiles/IDPosteriorErrorProbability.dir/build.make src/topp/CMakeFiles/IDPosteriorErrorProbability.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDPosteriorErrorProbability.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/IDPosteriorErrorProbability.dir/IDPosteriorErrorProbability.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDPosteriorErrorProbability.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target IDPosteriorErrorProbability make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IDPosteriorErrorProbability.dir/build.make src/topp/CMakeFiles/IDPosteriorErrorProbability.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/IDPosteriorErrorProbability.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Built target IDPosteriorErrorProbability make -f src/topp/CMakeFiles/IDRipper.dir/build.make src/topp/CMakeFiles/IDRipper.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDRipper.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/IDRipper.dir/IDRipper.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDRipper.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target IDRipper make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IDRipper.dir/build.make src/topp/CMakeFiles/IDRipper.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/IDRipper.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 87%] Built target IDRipper make -f src/topp/CMakeFiles/IDRTCalibration.dir/build.make src/topp/CMakeFiles/IDRTCalibration.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDRTCalibration.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/IDRTCalibration.dir/IDRTCalibration.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDRTCalibration.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target IDRTCalibration make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IDRTCalibration.dir/build.make src/topp/CMakeFiles/IDRTCalibration.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/IDRTCalibration.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 87%] Built target IDRTCalibration make -f src/topp/CMakeFiles/InclusionExclusionListCreator.dir/build.make src/topp/CMakeFiles/InclusionExclusionListCreator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/InclusionExclusionListCreator.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/InclusionExclusionListCreator.dir/InclusionExclusionListCreator.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/InclusionExclusionListCreator.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target InclusionExclusionListCreator make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/InclusionExclusionListCreator.dir/build.make src/topp/CMakeFiles/InclusionExclusionListCreator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/InclusionExclusionListCreator.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 87%] Built target InclusionExclusionListCreator make -f src/topp/CMakeFiles/InspectAdapter.dir/build.make src/topp/CMakeFiles/InspectAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/InspectAdapter.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/InspectAdapter.dir/InspectAdapter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/InspectAdapter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target InspectAdapter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/InspectAdapter.dir/build.make src/topp/CMakeFiles/InspectAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/InspectAdapter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 87%] Built target InspectAdapter make -f src/topp/CMakeFiles/InternalCalibration.dir/build.make src/topp/CMakeFiles/InternalCalibration.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/InternalCalibration.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/InternalCalibration.dir/InternalCalibration.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/InternalCalibration.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target InternalCalibration make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/InternalCalibration.dir/build.make src/topp/CMakeFiles/InternalCalibration.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/InternalCalibration.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 87%] Built target InternalCalibration make -f src/topp/CMakeFiles/IsobaricAnalyzer.dir/build.make src/topp/CMakeFiles/IsobaricAnalyzer.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IsobaricAnalyzer.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/IsobaricAnalyzer.dir/IsobaricAnalyzer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IsobaricAnalyzer.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target IsobaricAnalyzer make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IsobaricAnalyzer.dir/build.make src/topp/CMakeFiles/IsobaricAnalyzer.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/IsobaricAnalyzer.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 87%] Built target IsobaricAnalyzer make -f src/topp/CMakeFiles/LuciphorAdapter.dir/build.make src/topp/CMakeFiles/LuciphorAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/LuciphorAdapter.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/LuciphorAdapter.dir/LuciphorAdapter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/LuciphorAdapter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target LuciphorAdapter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/LuciphorAdapter.dir/build.make src/topp/CMakeFiles/LuciphorAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/LuciphorAdapter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 87%] Built target LuciphorAdapter make -f src/topp/CMakeFiles/MapAlignerIdentification.dir/build.make src/topp/CMakeFiles/MapAlignerIdentification.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapAlignerIdentification.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/MapAlignerIdentification.dir/MapAlignerIdentification.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapAlignerIdentification.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MapAlignerIdentification make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MapAlignerIdentification.dir/build.make src/topp/CMakeFiles/MapAlignerIdentification.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/MapAlignerIdentification.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 87%] Built target MapAlignerIdentification make -f src/topp/CMakeFiles/MapAlignerPoseClustering.dir/build.make src/topp/CMakeFiles/MapAlignerPoseClustering.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapAlignerPoseClustering.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/MapAlignerPoseClustering.dir/MapAlignerPoseClustering.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapAlignerPoseClustering.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MapAlignerPoseClustering make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MapAlignerPoseClustering.dir/build.make src/topp/CMakeFiles/MapAlignerPoseClustering.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/MapAlignerPoseClustering.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 87%] Built target MapAlignerPoseClustering make -f src/topp/CMakeFiles/MapAlignerSpectrum.dir/build.make src/topp/CMakeFiles/MapAlignerSpectrum.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapAlignerSpectrum.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/MapAlignerSpectrum.dir/MapAlignerSpectrum.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapAlignerSpectrum.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MapAlignerSpectrum make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MapAlignerSpectrum.dir/build.make src/topp/CMakeFiles/MapAlignerSpectrum.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/MapAlignerSpectrum.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 87%] Built target MapAlignerSpectrum make -f src/topp/CMakeFiles/MapAlignerTreeGuided.dir/build.make src/topp/CMakeFiles/MapAlignerTreeGuided.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapAlignerTreeGuided.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/MapAlignerTreeGuided.dir/MapAlignerTreeGuided.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapAlignerTreeGuided.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MapAlignerTreeGuided make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MapAlignerTreeGuided.dir/build.make src/topp/CMakeFiles/MapAlignerTreeGuided.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/MapAlignerTreeGuided.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 87%] Built target MapAlignerTreeGuided make -f src/topp/CMakeFiles/MapNormalizer.dir/build.make src/topp/CMakeFiles/MapNormalizer.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapNormalizer.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/MapNormalizer.dir/MapNormalizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapNormalizer.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MapNormalizer make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MapNormalizer.dir/build.make src/topp/CMakeFiles/MapNormalizer.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/MapNormalizer.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 87%] Built target MapNormalizer make -f src/topp/CMakeFiles/MapRTTransformer.dir/build.make src/topp/CMakeFiles/MapRTTransformer.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapRTTransformer.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/MapRTTransformer.dir/MapRTTransformer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapRTTransformer.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MapRTTransformer make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MapRTTransformer.dir/build.make src/topp/CMakeFiles/MapRTTransformer.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/MapRTTransformer.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Built target MapRTTransformer make -f src/topp/CMakeFiles/MapStatistics.dir/build.make src/topp/CMakeFiles/MapStatistics.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapStatistics.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/MapStatistics.dir/MapStatistics.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapStatistics.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MapStatistics make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MapStatistics.dir/build.make src/topp/CMakeFiles/MapStatistics.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/MapStatistics.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Built target MapStatistics make -f src/topp/CMakeFiles/MaRaClusterAdapter.dir/build.make src/topp/CMakeFiles/MaRaClusterAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MaRaClusterAdapter.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/MaRaClusterAdapter.dir/MaRaClusterAdapter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MaRaClusterAdapter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MaRaClusterAdapter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MaRaClusterAdapter.dir/build.make src/topp/CMakeFiles/MaRaClusterAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/MaRaClusterAdapter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Built target MaRaClusterAdapter make -f src/topp/CMakeFiles/MascotAdapter.dir/build.make src/topp/CMakeFiles/MascotAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MascotAdapter.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/MascotAdapter.dir/MascotAdapter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MascotAdapter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MascotAdapter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MascotAdapter.dir/build.make src/topp/CMakeFiles/MascotAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/MascotAdapter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Built target MascotAdapter make -f src/topp/CMakeFiles/MascotAdapterOnline.dir/build.make src/topp/CMakeFiles/MascotAdapterOnline.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MascotAdapterOnline.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/MascotAdapterOnline.dir/MascotAdapterOnline.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MascotAdapterOnline.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MascotAdapterOnline make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MascotAdapterOnline.dir/build.make src/topp/CMakeFiles/MascotAdapterOnline.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/MascotAdapterOnline.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Built target MascotAdapterOnline make -f src/topp/CMakeFiles/MassTraceExtractor.dir/build.make src/topp/CMakeFiles/MassTraceExtractor.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MassTraceExtractor.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/MassTraceExtractor.dir/MassTraceExtractor.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MassTraceExtractor.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MassTraceExtractor make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MassTraceExtractor.dir/build.make src/topp/CMakeFiles/MassTraceExtractor.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/MassTraceExtractor.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Built target MassTraceExtractor make -f src/topp/CMakeFiles/MRMMapper.dir/build.make src/topp/CMakeFiles/MRMMapper.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MRMMapper.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/MRMMapper.dir/MRMMapper.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MRMMapper.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MRMMapper make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MRMMapper.dir/build.make src/topp/CMakeFiles/MRMMapper.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/MRMMapper.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 89%] Built target MRMMapper make -f src/topp/CMakeFiles/MSGFPlusAdapter.dir/build.make src/topp/CMakeFiles/MSGFPlusAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MSGFPlusAdapter.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/MSGFPlusAdapter.dir/MSGFPlusAdapter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MSGFPlusAdapter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MSGFPlusAdapter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MSGFPlusAdapter.dir/build.make src/topp/CMakeFiles/MSGFPlusAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/MSGFPlusAdapter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 89%] Built target MSGFPlusAdapter make -f src/topp/CMakeFiles/MyriMatchAdapter.dir/build.make src/topp/CMakeFiles/MyriMatchAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MyriMatchAdapter.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/MyriMatchAdapter.dir/MyriMatchAdapter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MyriMatchAdapter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MyriMatchAdapter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MyriMatchAdapter.dir/build.make src/topp/CMakeFiles/MyriMatchAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/MyriMatchAdapter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 89%] Built target MyriMatchAdapter make -f src/topp/CMakeFiles/MzTabExporter.dir/build.make src/topp/CMakeFiles/MzTabExporter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MzTabExporter.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/MzTabExporter.dir/MzTabExporter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MzTabExporter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target MzTabExporter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MzTabExporter.dir/build.make src/topp/CMakeFiles/MzTabExporter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/MzTabExporter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 89%] Built target MzTabExporter make -f src/topp/CMakeFiles/NoiseFilterGaussian.dir/build.make src/topp/CMakeFiles/NoiseFilterGaussian.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/NoiseFilterGaussian.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/NoiseFilterGaussian.dir/NoiseFilterGaussian.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/NoiseFilterGaussian.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target NoiseFilterGaussian make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/NoiseFilterGaussian.dir/build.make src/topp/CMakeFiles/NoiseFilterGaussian.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/NoiseFilterGaussian.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Built target NoiseFilterGaussian make -f src/topp/CMakeFiles/NoiseFilterSGolay.dir/build.make src/topp/CMakeFiles/NoiseFilterSGolay.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/NoiseFilterSGolay.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/NoiseFilterSGolay.dir/NoiseFilterSGolay.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/NoiseFilterSGolay.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target NoiseFilterSGolay make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/NoiseFilterSGolay.dir/build.make src/topp/CMakeFiles/NoiseFilterSGolay.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/NoiseFilterSGolay.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Built target NoiseFilterSGolay make -f src/topp/CMakeFiles/OMSSAAdapter.dir/build.make src/topp/CMakeFiles/OMSSAAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OMSSAAdapter.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/OMSSAAdapter.dir/OMSSAAdapter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OMSSAAdapter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target OMSSAAdapter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OMSSAAdapter.dir/build.make src/topp/CMakeFiles/OMSSAAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/OMSSAAdapter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Built target OMSSAAdapter make -f src/topp/CMakeFiles/OpenPepXL.dir/build.make src/topp/CMakeFiles/OpenPepXL.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenPepXL.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/OpenPepXL.dir/OpenPepXL.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenPepXL.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target OpenPepXL make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenPepXL.dir/build.make src/topp/CMakeFiles/OpenPepXL.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/OpenPepXL.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Built target OpenPepXL make -f src/topp/CMakeFiles/OpenPepXLLF.dir/build.make src/topp/CMakeFiles/OpenPepXLLF.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenPepXLLF.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/OpenPepXLLF.dir/OpenPepXLLF.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenPepXLLF.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target OpenPepXLLF make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenPepXLLF.dir/build.make src/topp/CMakeFiles/OpenPepXLLF.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/OpenPepXLLF.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Built target OpenPepXLLF make -f src/topp/CMakeFiles/OpenSwathAnalyzer.dir/build.make src/topp/CMakeFiles/OpenSwathAnalyzer.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathAnalyzer.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/OpenSwathAnalyzer.dir/OpenSwathAnalyzer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathAnalyzer.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target OpenSwathAnalyzer make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenSwathAnalyzer.dir/build.make src/topp/CMakeFiles/OpenSwathAnalyzer.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/OpenSwathAnalyzer.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Built target OpenSwathAnalyzer make -f src/topp/CMakeFiles/OpenSwathAssayGenerator.dir/build.make src/topp/CMakeFiles/OpenSwathAssayGenerator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathAssayGenerator.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/OpenSwathAssayGenerator.dir/OpenSwathAssayGenerator.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathAssayGenerator.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target OpenSwathAssayGenerator make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenSwathAssayGenerator.dir/build.make src/topp/CMakeFiles/OpenSwathAssayGenerator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/OpenSwathAssayGenerator.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Built target OpenSwathAssayGenerator make -f src/topp/CMakeFiles/OpenSwathChromatogramExtractor.dir/build.make src/topp/CMakeFiles/OpenSwathChromatogramExtractor.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathChromatogramExtractor.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/OpenSwathChromatogramExtractor.dir/OpenSwathChromatogramExtractor.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathChromatogramExtractor.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target OpenSwathChromatogramExtractor make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenSwathChromatogramExtractor.dir/build.make src/topp/CMakeFiles/OpenSwathChromatogramExtractor.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/OpenSwathChromatogramExtractor.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 91%] Built target OpenSwathChromatogramExtractor make -f src/topp/CMakeFiles/OpenSwathConfidenceScoring.dir/build.make src/topp/CMakeFiles/OpenSwathConfidenceScoring.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathConfidenceScoring.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/OpenSwathConfidenceScoring.dir/OpenSwathConfidenceScoring.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathConfidenceScoring.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target OpenSwathConfidenceScoring make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenSwathConfidenceScoring.dir/build.make src/topp/CMakeFiles/OpenSwathConfidenceScoring.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/OpenSwathConfidenceScoring.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 91%] Built target OpenSwathConfidenceScoring make -f src/topp/CMakeFiles/OpenSwathDecoyGenerator.dir/build.make src/topp/CMakeFiles/OpenSwathDecoyGenerator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathDecoyGenerator.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/OpenSwathDecoyGenerator.dir/OpenSwathDecoyGenerator.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathDecoyGenerator.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target OpenSwathDecoyGenerator make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenSwathDecoyGenerator.dir/build.make src/topp/CMakeFiles/OpenSwathDecoyGenerator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/OpenSwathDecoyGenerator.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 91%] Built target OpenSwathDecoyGenerator make -f src/topp/CMakeFiles/OpenSwathFeatureXMLToTSV.dir/build.make src/topp/CMakeFiles/OpenSwathFeatureXMLToTSV.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathFeatureXMLToTSV.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/OpenSwathFeatureXMLToTSV.dir/OpenSwathFeatureXMLToTSV.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathFeatureXMLToTSV.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target OpenSwathFeatureXMLToTSV make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenSwathFeatureXMLToTSV.dir/build.make src/topp/CMakeFiles/OpenSwathFeatureXMLToTSV.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/OpenSwathFeatureXMLToTSV.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 91%] Built target OpenSwathFeatureXMLToTSV make -f src/topp/CMakeFiles/OpenSwathRTNormalizer.dir/build.make src/topp/CMakeFiles/OpenSwathRTNormalizer.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathRTNormalizer.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/OpenSwathRTNormalizer.dir/OpenSwathRTNormalizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathRTNormalizer.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target OpenSwathRTNormalizer make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenSwathRTNormalizer.dir/build.make src/topp/CMakeFiles/OpenSwathRTNormalizer.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/OpenSwathRTNormalizer.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Built target OpenSwathRTNormalizer make -f src/topp/CMakeFiles/PeakPickerHiRes.dir/build.make src/topp/CMakeFiles/PeakPickerHiRes.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PeakPickerHiRes.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/PeakPickerHiRes.dir/PeakPickerHiRes.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PeakPickerHiRes.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target PeakPickerHiRes make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PeakPickerHiRes.dir/build.make src/topp/CMakeFiles/PeakPickerHiRes.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/PeakPickerHiRes.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target PeakPickerHiRes make -f src/topp/CMakeFiles/PeakPickerWavelet.dir/build.make src/topp/CMakeFiles/PeakPickerWavelet.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PeakPickerWavelet.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/PeakPickerWavelet.dir/PeakPickerWavelet.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PeakPickerWavelet.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target PeakPickerWavelet make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PeakPickerWavelet.dir/build.make src/topp/CMakeFiles/PeakPickerWavelet.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/PeakPickerWavelet.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target PeakPickerWavelet make -f src/topp/CMakeFiles/PepNovoAdapter.dir/build.make src/topp/CMakeFiles/PepNovoAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PepNovoAdapter.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/PepNovoAdapter.dir/PepNovoAdapter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PepNovoAdapter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target PepNovoAdapter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PepNovoAdapter.dir/build.make src/topp/CMakeFiles/PepNovoAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/PepNovoAdapter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target PepNovoAdapter make -f src/topp/CMakeFiles/PeptideIndexer.dir/build.make src/topp/CMakeFiles/PeptideIndexer.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PeptideIndexer.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/PeptideIndexer.dir/PeptideIndexer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PeptideIndexer.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target PeptideIndexer make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PeptideIndexer.dir/build.make src/topp/CMakeFiles/PeptideIndexer.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/PeptideIndexer.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target PeptideIndexer make -f src/topp/CMakeFiles/PercolatorAdapter.dir/build.make src/topp/CMakeFiles/PercolatorAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PercolatorAdapter.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/PercolatorAdapter.dir/PercolatorAdapter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PercolatorAdapter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target PercolatorAdapter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PercolatorAdapter.dir/build.make src/topp/CMakeFiles/PercolatorAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/PercolatorAdapter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target PercolatorAdapter make -f src/topp/CMakeFiles/PhosphoScoring.dir/build.make src/topp/CMakeFiles/PhosphoScoring.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PhosphoScoring.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/PhosphoScoring.dir/PhosphoScoring.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PhosphoScoring.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target PhosphoScoring make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PhosphoScoring.dir/build.make src/topp/CMakeFiles/PhosphoScoring.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/PhosphoScoring.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target PhosphoScoring make -f src/topp/CMakeFiles/PrecursorIonSelector.dir/build.make src/topp/CMakeFiles/PrecursorIonSelector.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PrecursorIonSelector.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/PrecursorIonSelector.dir/PrecursorIonSelector.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PrecursorIonSelector.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target PrecursorIonSelector make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PrecursorIonSelector.dir/build.make src/topp/CMakeFiles/PrecursorIonSelector.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/PrecursorIonSelector.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Built target PrecursorIonSelector make -f src/topp/CMakeFiles/PrecursorMassCorrector.dir/build.make src/topp/CMakeFiles/PrecursorMassCorrector.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PrecursorMassCorrector.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/PrecursorMassCorrector.dir/PrecursorMassCorrector.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PrecursorMassCorrector.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target PrecursorMassCorrector make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PrecursorMassCorrector.dir/build.make src/topp/CMakeFiles/PrecursorMassCorrector.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/PrecursorMassCorrector.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Built target PrecursorMassCorrector make -f src/topp/CMakeFiles/ProteinInference.dir/build.make src/topp/CMakeFiles/ProteinInference.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ProteinInference.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/ProteinInference.dir/ProteinInference.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ProteinInference.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target ProteinInference make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/ProteinInference.dir/build.make src/topp/CMakeFiles/ProteinInference.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/ProteinInference.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Built target ProteinInference make -f src/topp/CMakeFiles/ProteinQuantifier.dir/build.make src/topp/CMakeFiles/ProteinQuantifier.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ProteinQuantifier.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/ProteinQuantifier.dir/ProteinQuantifier.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ProteinQuantifier.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target ProteinQuantifier make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/ProteinQuantifier.dir/build.make src/topp/CMakeFiles/ProteinQuantifier.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/ProteinQuantifier.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Built target ProteinQuantifier make -f src/topp/CMakeFiles/ProteinResolver.dir/build.make src/topp/CMakeFiles/ProteinResolver.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ProteinResolver.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/ProteinResolver.dir/ProteinResolver.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ProteinResolver.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target ProteinResolver make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/ProteinResolver.dir/build.make src/topp/CMakeFiles/ProteinResolver.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/ProteinResolver.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Built target ProteinResolver make -f src/topp/CMakeFiles/PTModel.dir/build.make src/topp/CMakeFiles/PTModel.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PTModel.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/PTModel.dir/PTModel.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PTModel.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target PTModel make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PTModel.dir/build.make src/topp/CMakeFiles/PTModel.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/PTModel.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Built target PTModel make -f src/topp/CMakeFiles/PTPredict.dir/build.make src/topp/CMakeFiles/PTPredict.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PTPredict.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/PTPredict.dir/PTPredict.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PTPredict.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target PTPredict make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PTPredict.dir/build.make src/topp/CMakeFiles/PTPredict.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/PTPredict.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Built target PTPredict make -f src/topp/CMakeFiles/QualityControl.dir/build.make src/topp/CMakeFiles/QualityControl.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/QualityControl.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/QualityControl.dir/QualityControl.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/QualityControl.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target QualityControl make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/QualityControl.dir/build.make src/topp/CMakeFiles/QualityControl.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/QualityControl.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 95%] Built target QualityControl make -f src/topp/CMakeFiles/RTModel.dir/build.make src/topp/CMakeFiles/RTModel.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/RTModel.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/RTModel.dir/RTModel.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/RTModel.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target RTModel make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/RTModel.dir/build.make src/topp/CMakeFiles/RTModel.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/RTModel.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 95%] Built target RTModel make -f src/topp/CMakeFiles/RTPredict.dir/build.make src/topp/CMakeFiles/RTPredict.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/RTPredict.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/RTPredict.dir/RTPredict.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/RTPredict.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target RTPredict make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/RTPredict.dir/build.make src/topp/CMakeFiles/RTPredict.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/RTPredict.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target RTPredict make -f src/topp/CMakeFiles/SeedListGenerator.dir/build.make src/topp/CMakeFiles/SeedListGenerator.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SeedListGenerator.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/SeedListGenerator.dir/SeedListGenerator.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SeedListGenerator.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target SeedListGenerator make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SeedListGenerator.dir/build.make src/topp/CMakeFiles/SeedListGenerator.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/SeedListGenerator.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target SeedListGenerator make -f src/topp/CMakeFiles/SpecLibSearcher.dir/build.make src/topp/CMakeFiles/SpecLibSearcher.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpecLibSearcher.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/SpecLibSearcher.dir/SpecLibSearcher.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpecLibSearcher.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target SpecLibSearcher make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpecLibSearcher.dir/build.make src/topp/CMakeFiles/SpecLibSearcher.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/SpecLibSearcher.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target SpecLibSearcher make -f src/topp/CMakeFiles/SpectraFilterBernNorm.dir/build.make src/topp/CMakeFiles/SpectraFilterBernNorm.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterBernNorm.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/SpectraFilterBernNorm.dir/SpectraFilterBernNorm.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterBernNorm.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target SpectraFilterBernNorm make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterBernNorm.dir/build.make src/topp/CMakeFiles/SpectraFilterBernNorm.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/SpectraFilterBernNorm.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target SpectraFilterBernNorm make -f src/topp/CMakeFiles/SpectraFilterMarkerMower.dir/build.make src/topp/CMakeFiles/SpectraFilterMarkerMower.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterMarkerMower.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/SpectraFilterMarkerMower.dir/SpectraFilterMarkerMower.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterMarkerMower.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target SpectraFilterMarkerMower make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterMarkerMower.dir/build.make src/topp/CMakeFiles/SpectraFilterMarkerMower.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/SpectraFilterMarkerMower.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target SpectraFilterMarkerMower make -f src/topp/CMakeFiles/SpectraFilterNLargest.dir/build.make src/topp/CMakeFiles/SpectraFilterNLargest.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterNLargest.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/SpectraFilterNLargest.dir/SpectraFilterNLargest.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterNLargest.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target SpectraFilterNLargest make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterNLargest.dir/build.make src/topp/CMakeFiles/SpectraFilterNLargest.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/SpectraFilterNLargest.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target SpectraFilterNLargest make -f src/topp/CMakeFiles/SpectraFilterNormalizer.dir/build.make src/topp/CMakeFiles/SpectraFilterNormalizer.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterNormalizer.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/SpectraFilterNormalizer.dir/SpectraFilterNormalizer.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterNormalizer.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target SpectraFilterNormalizer make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterNormalizer.dir/build.make src/topp/CMakeFiles/SpectraFilterNormalizer.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/SpectraFilterNormalizer.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target SpectraFilterNormalizer make -f src/topp/CMakeFiles/SpectraFilterParentPeakMower.dir/build.make src/topp/CMakeFiles/SpectraFilterParentPeakMower.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterParentPeakMower.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/SpectraFilterParentPeakMower.dir/SpectraFilterParentPeakMower.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterParentPeakMower.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target SpectraFilterParentPeakMower make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterParentPeakMower.dir/build.make src/topp/CMakeFiles/SpectraFilterParentPeakMower.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/SpectraFilterParentPeakMower.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Built target SpectraFilterParentPeakMower make -f src/topp/CMakeFiles/SpectraFilterScaler.dir/build.make src/topp/CMakeFiles/SpectraFilterScaler.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterScaler.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/SpectraFilterScaler.dir/SpectraFilterScaler.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterScaler.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target SpectraFilterScaler make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterScaler.dir/build.make src/topp/CMakeFiles/SpectraFilterScaler.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/SpectraFilterScaler.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Built target SpectraFilterScaler make -f src/topp/CMakeFiles/SpectraFilterSqrtMower.dir/build.make src/topp/CMakeFiles/SpectraFilterSqrtMower.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterSqrtMower.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/SpectraFilterSqrtMower.dir/SpectraFilterSqrtMower.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterSqrtMower.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target SpectraFilterSqrtMower make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterSqrtMower.dir/build.make src/topp/CMakeFiles/SpectraFilterSqrtMower.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/SpectraFilterSqrtMower.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Built target SpectraFilterSqrtMower make -f src/topp/CMakeFiles/SpectraFilterThresholdMower.dir/build.make src/topp/CMakeFiles/SpectraFilterThresholdMower.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterThresholdMower.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/SpectraFilterThresholdMower.dir/SpectraFilterThresholdMower.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterThresholdMower.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target SpectraFilterThresholdMower make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterThresholdMower.dir/build.make src/topp/CMakeFiles/SpectraFilterThresholdMower.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/SpectraFilterThresholdMower.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Built target SpectraFilterThresholdMower make -f src/topp/CMakeFiles/SpectraFilterWindowMower.dir/build.make src/topp/CMakeFiles/SpectraFilterWindowMower.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterWindowMower.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/SpectraFilterWindowMower.dir/SpectraFilterWindowMower.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterWindowMower.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target SpectraFilterWindowMower make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterWindowMower.dir/build.make src/topp/CMakeFiles/SpectraFilterWindowMower.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/SpectraFilterWindowMower.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Built target SpectraFilterWindowMower make -f src/topp/CMakeFiles/SpectraMerger.dir/build.make src/topp/CMakeFiles/SpectraMerger.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraMerger.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/SpectraMerger.dir/SpectraMerger.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraMerger.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target SpectraMerger make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraMerger.dir/build.make src/topp/CMakeFiles/SpectraMerger.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/SpectraMerger.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Built target SpectraMerger make -f src/topp/CMakeFiles/TextExporter.dir/build.make src/topp/CMakeFiles/TextExporter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/TextExporter.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/TextExporter.dir/TextExporter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/TextExporter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target TextExporter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/TextExporter.dir/build.make src/topp/CMakeFiles/TextExporter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/TextExporter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target TextExporter make -f src/topp/CMakeFiles/TOFCalibration.dir/build.make src/topp/CMakeFiles/TOFCalibration.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/TOFCalibration.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/TOFCalibration.dir/TOFCalibration.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/TOFCalibration.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target TOFCalibration make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/TOFCalibration.dir/build.make src/topp/CMakeFiles/TOFCalibration.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/TOFCalibration.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target TOFCalibration make -f src/topp/CMakeFiles/XFDR.dir/build.make src/topp/CMakeFiles/XFDR.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/XFDR.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/XFDR.dir/XFDR.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/XFDR.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target XFDR make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/XFDR.dir/build.make src/topp/CMakeFiles/XFDR.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/XFDR.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Built target XFDR make -f src/topp/CMakeFiles/XTandemAdapter.dir/build.make src/topp/CMakeFiles/XTandemAdapter.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/XTandemAdapter.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/XTandemAdapter.dir/XTandemAdapter.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/XTandemAdapter.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target XTandemAdapter make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/XTandemAdapter.dir/build.make src/topp/CMakeFiles/XTandemAdapter.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/XTandemAdapter.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Built target XTandemAdapter make -f src/topp/CMakeFiles/ExecutePipeline.dir/build.make src/topp/CMakeFiles/ExecutePipeline.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ExecutePipeline.dir/DependInfo.cmake "--color=" Dependencies file "src/topp/CMakeFiles/ExecutePipeline.dir/ExecutePipeline.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ExecutePipeline.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target ExecutePipeline make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/ExecutePipeline.dir/build.make src/topp/CMakeFiles/ExecutePipeline.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/ExecutePipeline.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Built target ExecutePipeline make -f src/topp/CMakeFiles/TOPP.dir/build.make src/topp/CMakeFiles/TOPP.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/TOPP.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/TOPP.dir/build.make src/topp/CMakeFiles/TOPP.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'src/topp/CMakeFiles/TOPP.dir/build'. make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Built target TOPP make -f doc/CMakeFiles/doc_minimal.dir/build.make doc/CMakeFiles/doc_minimal.dir/depend make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/CMakeFiles/doc_minimal.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f doc/CMakeFiles/doc_minimal.dir/build.make doc/CMakeFiles/doc_minimal.dir/build make[5]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Build the doxygen documentation cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "" cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "Creating html documentation without class/TOPP/UTILS documentation" Creating html documentation without class/TOPP/UTILS documentation cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "" cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E remove_directory html cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E chdir /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc /usr/bin/doxygen doxygen/Doxyfile_noclass warning: Tag 'OUTPUT_TEXT_DIRECTION' at line 115 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'TCL_SUBST' at line 284 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 1147 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 1283 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1575 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1877 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 1893 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'RTF_SOURCE_CODE' at line 1967 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 2072 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 2260 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 2302 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 2309 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 2533 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! Doxygen version used: 1.9.8 Searching for include files... Searching for example files... 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directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/CLUSTERING Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include/OpenMS Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include/OpenMS/TRANSFORMATIONS Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/APPLICATIONS Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/APPLICATIONS/MISC Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/ANNOTATION Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/MISC Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/INIFileEditor-resources Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPView-resources Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPAS-resources Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/SwathWizard-resources Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/MISC Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/topp Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/utils Reading and parsing tag files Parsing files Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/OpenMS_tutorial/OpenMS_Tutorial.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/OpenMS_tutorial/OpenMS_Tutorial.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/TOPP_tutorial/TOPP_advanced.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/TOPP_tutorial/TOPP_advanced.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/TOPP_tutorial/TOPP_concepts.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/TOPP_tutorial/TOPP_concepts.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/TOPP_tutorial/TOPP_scripting.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/TOPP_tutorial/TOPP_scripting.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/TOPP_tutorial/TOPPAS.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/TOPP_tutorial/TOPPAS.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/TOPP_tutorial/TOPPView_calling_topp.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/TOPP_tutorial/TOPPView_calling_topp.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/TOPP_tutorial/TOPPView_interface.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/TOPP_tutorial/TOPPView_interface.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/Changelog.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/Changelog.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/ExternalCode.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/ExternalCode.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/FAQ.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/FAQ.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/KnownDevBugs.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/KnownDevBugs.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/Main.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/Main.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/Modules.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/Modules.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/OpenMS_Tutorial_html.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/OpenMS_Tutorial_html.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/PyOpenMS.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/PyOpenMS.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/QuickStart.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/QuickStart.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/TOPP.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/TOPP.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/TOPP_Tutorial_html.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/TOPP_Tutorial_html.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/TOPPAS.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/TOPPAS.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/UTILS.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/UTILS.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/common-cmake-parameters.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/common-cmake-parameters.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/install-linux-bin.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/install-linux-bin.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/install-linux.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/install-linux.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/install-macs-bin.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/install-macs-bin.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/install-macs.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/install-macs.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/install-win-bin.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/install-win-bin.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/install-win.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/install-win.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/INIFileEditor.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/INIFileEditor.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/SwathWizard.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/SwathWizard.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPAS.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPAS.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPView.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPView.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/INIFileEditorWindow.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/INIFileEditorWindow.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/MISC/QApplicationTOPP.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/MISC/QApplicationTOPP.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/SwathWizardBase.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/SwathWizardBase.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPASBase.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPASBase.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/BaselineFilter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/BaselineFilter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/CometAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/CometAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/CompNovo.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/CompNovo.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/CompNovoCID.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/CompNovoCID.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ConsensusID.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ConsensusID.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ConsensusMapNormalizer.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ConsensusMapNormalizer.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/CruxAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/CruxAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/DatabaseSuitability.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/DatabaseSuitability.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/Decharger.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/Decharger.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/DTAExtractor.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/DTAExtractor.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/EICExtractor.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/EICExtractor.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ExecutePipeline.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ExecutePipeline.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ExternalCalibration.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ExternalCalibration.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FalseDiscoveryRate.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FalseDiscoveryRate.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderCentroided.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderCentroided.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderIdentification.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderIdentification.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderIsotopeWavelet.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderIsotopeWavelet.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderMetabo.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderMetabo.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderMRM.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderMRM.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderMultiplex.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderMultiplex.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureLinkerBase.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureLinkerBase.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureLinkerLabeled.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureLinkerLabeled.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureLinkerUnlabeled.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureLinkerUnlabeled.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureLinkerUnlabeledKD.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureLinkerUnlabeledKD.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureLinkerUnlabeledQT.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureLinkerUnlabeledQT.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FidoAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FidoAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FileConverter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FileConverter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FileFilter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FileFilter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FileInfo.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FileInfo.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FileMerger.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FileMerger.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/GenericWrapper.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/GenericWrapper.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/GNPSExport.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/GNPSExport.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/HighResPrecursorMassCorrector.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/HighResPrecursorMassCorrector.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDConflictResolver.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDConflictResolver.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDFileConverter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDFileConverter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDFilter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDFilter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDMapper.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDMapper.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDMerger.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDMerger.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDPosteriorErrorProbability.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDPosteriorErrorProbability.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDRipper.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDRipper.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDRTCalibration.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDRTCalibration.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/InclusionExclusionListCreator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/InclusionExclusionListCreator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/InspectAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/InspectAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/InternalCalibration.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/InternalCalibration.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IsobaricAnalyzer.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IsobaricAnalyzer.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/LuciphorAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/LuciphorAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapAlignerIdentification.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapAlignerIdentification.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapAlignerPoseClustering.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapAlignerPoseClustering.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapAlignerSpectrum.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapAlignerSpectrum.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapAlignerTreeGuided.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapAlignerTreeGuided.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapNormalizer.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapNormalizer.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapRTTransformer.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapRTTransformer.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapStatistics.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapStatistics.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MaRaClusterAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MaRaClusterAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MascotAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MascotAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MascotAdapterOnline.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MascotAdapterOnline.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MassTraceExtractor.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MassTraceExtractor.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MRMMapper.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MRMMapper.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MSGFPlusAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MSGFPlusAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MyriMatchAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MyriMatchAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MzTabExporter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MzTabExporter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/NoiseFilterGaussian.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/NoiseFilterGaussian.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/NoiseFilterSGolay.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/NoiseFilterSGolay.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OMSSAAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OMSSAAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenPepXL.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenPepXL.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenPepXLLF.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenPepXLLF.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathAnalyzer.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathAnalyzer.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathAssayGenerator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathAssayGenerator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathChromatogramExtractor.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathChromatogramExtractor.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathConfidenceScoring.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathConfidenceScoring.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathDecoyGenerator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathDecoyGenerator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathFeatureXMLToTSV.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathFeatureXMLToTSV.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathRTNormalizer.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathRTNormalizer.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PeakPickerHiRes.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PeakPickerHiRes.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PeakPickerWavelet.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PeakPickerWavelet.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PepNovoAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PepNovoAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PeptideIndexer.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PeptideIndexer.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PercolatorAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PercolatorAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PhosphoScoring.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PhosphoScoring.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PrecursorIonSelector.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PrecursorIonSelector.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PrecursorMassCorrector.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PrecursorMassCorrector.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ProteinInference.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ProteinInference.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ProteinQuantifier.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ProteinQuantifier.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ProteinResolver.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ProteinResolver.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PTModel.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PTModel.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PTPredict.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PTPredict.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/QualityControl.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/QualityControl.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/Resampler.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/Resampler.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/RTModel.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/RTModel.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/RTPredict.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/RTPredict.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SeedListGenerator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SeedListGenerator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpecLibSearcher.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpecLibSearcher.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterBernNorm.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterBernNorm.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterMarkerMower.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterMarkerMower.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterNLargest.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterNLargest.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterNormalizer.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterNormalizer.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterParentPeakMower.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterParentPeakMower.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterScaler.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterScaler.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterSqrtMower.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterSqrtMower.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterThresholdMower.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterThresholdMower.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterWindowMower.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterWindowMower.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraMerger.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraMerger.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/TextExporter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/TextExporter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/TOFCalibration.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/TOFCalibration.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/XFDR.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/XFDR.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/XTandemAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/XTandemAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/AccurateMassSearch.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/AccurateMassSearch.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/AssayGeneratorMetabo.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/AssayGeneratorMetabo.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ClusterMassTraces.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ClusterMassTraces.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ClusterMassTracesByPrecursor.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ClusterMassTracesByPrecursor.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/CVInspector.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/CVInspector.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/DatabaseFilter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/DatabaseFilter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/DecoyDatabase.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/DecoyDatabase.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/DeMeanderize.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/DeMeanderize.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/Digestor.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/Digestor.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/DigestorMotif.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/DigestorMotif.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/Epifany.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/Epifany.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ERPairFinder.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ERPairFinder.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/FeatureFinderMetaboIdent.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/FeatureFinderMetaboIdent.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/FeatureFinderSuperHirn.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/FeatureFinderSuperHirn.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/FFEval.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/FFEval.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/FuzzyDiff.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/FuzzyDiff.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDDecoyProbability.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDDecoyProbability.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDExtractor.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDExtractor.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDMassAccuracy.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDMassAccuracy.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDScoreSwitcher.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDScoreSwitcher.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDSplitter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDSplitter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ImageCreator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ImageCreator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/INIUpdater.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/INIUpdater.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/LabeledEval.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/LabeledEval.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MassCalculator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MassCalculator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MetaboliteAdductDecharger.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MetaboliteAdductDecharger.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MetaboliteSpectralMatcher.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MetaboliteSpectralMatcher.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MetaProSIP.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MetaProSIP.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MRMPairFinder.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MRMPairFinder.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MRMTransitionGroupPicker.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MRMTransitionGroupPicker.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MSFraggerAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MSFraggerAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MSSimulator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MSSimulator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MSstatsConverter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MSstatsConverter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MultiplexResolver.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MultiplexResolver.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MzMLSplitter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MzMLSplitter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/NovorAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/NovorAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/NucleicAcidSearchEngine.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/NucleicAcidSearchEngine.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenMSInfo.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenMSInfo.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathDIAPreScoring.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathDIAPreScoring.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathFileSplitter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathFileSplitter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathMzMLFileCacher.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathMzMLFileCacher.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathRewriteToFeatureXML.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathRewriteToFeatureXML.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathWorkflow.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathWorkflow.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/PeakPickerIterative.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/PeakPickerIterative.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ProteomicsLFQ.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ProteomicsLFQ.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/PSMFeatureExtractor.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/PSMFeatureExtractor.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCCalculator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCCalculator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCEmbedder.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCEmbedder.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCExporter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCExporter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCExtractor.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCExtractor.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCImporter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCImporter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCMerger.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCMerger.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCShrinker.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCShrinker.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RNADigestor.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RNADigestor.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RNAMassCalculator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RNAMassCalculator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RNPxlSearch.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RNPxlSearch.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RNPxlXICFilter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RNPxlXICFilter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RTEvaluation.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RTEvaluation.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SemanticValidator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SemanticValidator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SequenceCoverageCalculator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SequenceCoverageCalculator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SimpleSearchEngine.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SimpleSearchEngine.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SiriusAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SiriusAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SpecLibCreator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SpecLibCreator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SpectraSTSearchAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SpectraSTSearchAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/StaticModification.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/StaticModification.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SvmTheoreticalSpectrumGeneratorTrainer.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SvmTheoreticalSpectrumGeneratorTrainer.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/TargetedFileConverter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/TargetedFileConverter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/TICCalculator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/TICCalculator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/TransformationEvaluation.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/TransformationEvaluation.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/XMLValidator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/XMLValidator.cpp... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Searching for tag less structs... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing memFontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories ber references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating images for formulas in HTML... Generating image form_0.png for formula Generating image form_1.png for formula Generating image form_2.png for formula Generating image form_3.png for formula Generating image form_4.png for formula Generating image form_5.png for formula Generating image form_6.png for formula Generating image form_7.png for formula Generating image form_8.png for formula Generating image form_9.png for formula Generating image form_0_dark.png for formula Generating image form_1_dark.png for formula Generating image form_2_dark.png for formula Generating image form_3_dark.png for formula Generating image form_4_dark.png for formula Generating image form_5_dark.png for formula Generating image form_6_dark.png for formula Generating image form_7_dark.png for formula Generating image form_8_dark.png for formula Generating image form_9_dark.png for formula Generating example documentation... Generating file sources... Parsing code for file common-cmake-parameters.doxygen... Parsing code for file install-linux-bin.doxygen... Parsing code for file install-linux.doxygen... Parsing code for file install-macs-bin.doxygen... Parsing code for file install-macs.doxygen... Parsing code for file install-win-bin.doxygen... Parsing code for file install-win.doxygen... Parsing code for file Changelog.doxygen... Parsing code for file ExternalCode.doxygen... Parsing code for file FAQ.doxygen... Parsing code for file KnownDevBugs.doxygen... Parsing code for file Main.doxygen... Parsing code for file Modules.doxygen... Parsing code for file OpenMS_Tutorial_html.doxygen... Parsing code for file PyOpenMS.doxygen... Parsing code for file QuickStart.doxygen... Parsing code for file TOPP.doxygen... Parsing code for file TOPP_Tutorial_html.doxygen... Parsing code for file UTILS.doxygen... Parsing code for file OpenMS_Tutorial.doxygen... Parsing code for file TOPP_advanced.doxygen... Parsing code for file TOPP_concepts.doxygen... Parsing code for file TOPP_scripting.doxygen... Parsing code for file TOPPAS.doxygen... Parsing code for file TOPPAS.doxygen... Parsing code for file TOPPView_calling_topp.doxygen... Parsing code for file TOPPView_interface.doxygen... Parsing code for file INIFileEditor.cpp... Parsing code for file SwathWizard.cpp... Parsing code for file TOPPAS.cpp... Parsing code for file TOPPView.cpp... Parsing code for file INIFileEditorWindow.cpp... Parsing code for file QApplicationTOPP.cpp... Parsing code for file SwathWizardBase.cpp... Parsing code for file TOPPASBase.cpp... Parsing code for file TOPPViewBase.cpp... Parsing code for file BaselineFilter.cpp... Parsing code for file CometAdapter.cpp... Parsing code for file CompNovo.cpp... Parsing code for file CompNovoCID.cpp... Parsing code for file ConsensusID.cpp... Parsing code for file ConsensusMapNormalizer.cpp... Parsing code for file CruxAdapter.cpp... Parsing code for file DatabaseSuitability.cpp... Parsing code for file Decharger.cpp... Parsing code for file DTAExtractor.cpp... Parsing code for file EICExtractor.cpp... Parsing code for file ExecutePipeline.cpp... Parsing code for file ExternalCalibration.cpp... Parsing code for file FalseDiscoveryRate.cpp... Parsing code for file FeatureFinderCentroided.cpp... Parsing code for file FeatureFinderIdentification.cpp... Parsing code for file FeatureFinderIsotopeWavelet.cpp... Parsing code for file FeatureFinderMetabo.cpp... Parsing code for file FeatureFinderMRM.cpp... Parsing code for file FeatureFinderMultiplex.cpp... Generating code for file FeatureLinkerBase.cpp... Parsing code for file FeatureLinkerLabeled.cpp... Parsing code for file FeatureLinkerUnlabeled.cpp... Parsing code for file FeatureLinkerUnlabeledKD.cpp... Parsing code for file FeatureLinkerUnlabeledQT.cpp... Parsing code for file FidoAdapter.cpp... Parsing code for file FileConverter.cpp... Parsing code for file FileFilter.cpp... Parsing code for file FileInfo.cpp... Parsing code for file FileMerger.cpp... Parsing code for file GenericWrapper.cpp... Parsing code for file GNPSExport.cpp... Parsing code for file HighResPrecursorMassCorrector.cpp... Parsing code for file IDConflictResolver.cpp... Parsing code for file IDFileConverter.cpp... Parsing code for file IDFilter.cpp... Parsing code for file IDMapper.cpp... Parsing code for file IDMerger.cpp... Parsing code for file IDPosteriorErrorProbability.cpp... Parsing code for file IDRipper.cpp... Parsing code for file IDRTCalibration.cpp... Parsing code for file InclusionExclusionListCreator.cpp... Parsing code for file InspectAdapter.cpp... Parsing code for file InternalCalibration.cpp... Parsing code for file IsobaricAnalyzer.cpp... Parsing code for file LuciphorAdapter.cpp... Parsing code for file MapAlignerIdentification.cpp... Parsing code for file MapAlignerPoseClustering.cpp... Parsing code for file MapAlignerSpectrum.cpp... Parsing code for file MapAlignerTreeGuided.cpp... Parsing code for file MapNormalizer.cpp... Parsing code for file MapRTTransformer.cpp... Parsing code for file MapStatistics.cpp... Parsing code for file MaRaClusterAdapter.cpp... Parsing code for file MascotAdapter.cpp... Parsing code for file MascotAdapterOnline.cpp... Parsing code for file MassTraceExtractor.cpp... Parsing code for file MRMMapper.cpp... Parsing code for file MSGFPlusAdapter.cpp... Parsing code for file MyriMatchAdapter.cpp... Parsing code for file MzTabExporter.cpp... Parsing code for file NoiseFilterGaussian.cpp... Parsing code for file NoiseFilterSGolay.cpp... Parsing code for file OMSSAAdapter.cpp... Parsing code for file OpenPepXL.cpp... Parsing code for file OpenPepXLLF.cpp... Parsing code for file OpenSwathAnalyzer.cpp... Parsing code for file OpenSwathAssayGenerator.cpp... Parsing code for file OpenSwathChromatogramExtractor.cpp... Parsing code for file OpenSwathConfidenceScoring.cpp... Parsing code for file OpenSwathDecoyGenerator.cpp... Parsing code for file OpenSwathFeatureXMLToTSV.cpp... Parsing code for file OpenSwathRTNormalizer.cpp... Parsing code for file PeakPickerHiRes.cpp... Parsing code for file PeakPickerWavelet.cpp... Parsing code for file PepNovoAdapter.cpp... Parsing code for file PeptideIndexer.cpp... Parsing code for file PercolatorAdapter.cpp... Parsing code for file PhosphoScoring.cpp... Parsing code for file PrecursorIonSelector.cpp... Parsing code for file PrecursorMassCorrector.cpp... Parsing code for file ProteinInference.cpp... Parsing code for file ProteinQuantifier.cpp... Parsing code for file ProteinResolver.cpp... Parsing code for file PTModel.cpp... Parsing code for file PTPredict.cpp... Parsing code for file QualityControl.cpp... Parsing code for file Resampler.cpp... Parsing code for file RTModel.cpp... Parsing code for file RTPredict.cpp... Parsing code for file SeedListGenerator.cpp... Parsing code for file SpecLibSearcher.cpp... Parsing code for file SpectraFilterBernNorm.cpp... Parsing code for file SpectraFilterMarkerMower.cpp... Parsing code for file SpectraFilterNLargest.cpp... Parsing code for file SpectraFilterNormalizer.cpp... Parsing code for file SpectraFilterParentPeakMower.cpp... Parsing code for file SpectraFilterScaler.cpp... Parsing code for file SpectraFilterSqrtMower.cpp... Parsing code for file SpectraFilterThresholdMower.cpp... Parsing code for file SpectraFilterWindowMower.cpp... Parsing code for file SpectraMerger.cpp... Parsing code for file TextExporter.cpp... Parsing code for file TOFCalibration.cpp... Parsing code for file XFDR.cpp... Parsing code for file XTandemAdapter.cpp... Parsing code for file AccurateMassSearch.cpp... Parsing code for file AssayGeneratorMetabo.cpp... Parsing code for file ClusterMassTraces.cpp... Parsing code for file ClusterMassTracesByPrecursor.cpp... Parsing code for file CVInspector.cpp... Parsing code for file DatabaseFilter.cpp... Parsing code for file DecoyDatabase.cpp... Parsing code for file DeMeanderize.cpp... Parsing code for file Digestor.cpp... Parsing code for file DigestorMotif.cpp... Parsing code for file Epifany.cpp... Parsing code for file ERPairFinder.cpp... Parsing code for file FeatureFinderMetaboIdent.cpp... Parsing code for file FeatureFinderSuperHirn.cpp... Parsing code for file FFEval.cpp... Parsing code for file FuzzyDiff.cpp... Parsing code for file IDDecoyProbability.cpp... Parsing code for file IDExtractor.cpp... Parsing code for file IDMassAccuracy.cpp... Parsing code for file IDScoreSwitcher.cpp... Parsing code for file IDSplitter.cpp... Parsing code for file ImageCreator.cpp... Parsing code for file INIUpdater.cpp... Parsing code for file LabeledEval.cpp... Parsing code for file MassCalculator.cpp... Parsing code for file MetaboliteAdductDecharger.cpp... Parsing code for file MetaboliteSpectralMatcher.cpp... Parsing code for file MetaProSIP.cpp... Parsing code for file MRMPairFinder.cpp... Parsing code for file MRMTransitionGroupPicker.cpp... Parsing code for file MSFraggerAdapter.cpp... Parsing code for file MSSimulator.cpp... Parsing code for file MSstatsConverter.cpp... Parsing code for file MultiplexResolver.cpp... Parsing code for file MzMLSplitter.cpp... Parsing code for file NovorAdapter.cpp... Parsing code for file NucleicAcidSearchEngine.cpp... Parsing code for file OpenMSInfo.cpp... Parsing code for file OpenSwathDIAPreScoring.cpp... Parsing code for file OpenSwathFileSplitter.cpp... Parsing code for file OpenSwathMzMLFileCacher.cpp... Parsing code for file OpenSwathRewriteToFeatureXML.cpp... Parsing code for file OpenSwathWorkflow.cpp... Parsing code for file PeakPickerIterative.cpp... Parsing code for file ProteomicsLFQ.cpp... Parsing code for file PSMFeatureExtractor.cpp... Parsing code for file QCCalculator.cpp... Parsing code for file QCEmbedder.cpp... Parsing code for file QCExporter.cpp... Parsing code for file QCExtractor.cpp... Parsing code for file QCImporter.cpp... Parsing code for file QCMerger.cpp... Parsing code for file QCShrinker.cpp... Parsing code for file RNADigestor.cpp... Parsing code for file RNAMassCalculator.cpp... Parsing code for file RNPxlSearch.cpp... Parsing code for file RNPxlXICFilter.cpp... Parsing code for file RTEvaluation.cpp... Parsing code for file SemanticValidator.cpp... Parsing code for file SequenceCoverageCalculator.cpp... Parsing code for file SimpleSearchEngine.cpp... Parsing code for file SiriusAdapter.cpp... Parsing code for file SpecLibCreator.cpp... Parsing code for file SpectraSTSearchAdapter.cpp... Parsing code for file StaticModification.cpp... Parsing code for file SvmTheoreticalSpectrumGeneratorTrainer.cpp... Parsing code for file TargetedFileConverter.cpp... Parsing code for file TICCalculator.cpp... Parsing code for file TransformationEvaluation.cpp... Parsing code for file XMLValidator.cpp... Generating file documentation... Generating docs for file common-cmake-parameters.doxygen... Generating docs for file install-linux-bin.doxygen... Generating docs for file install-linux.doxygen... Generating docs for file install-macs-bin.doxygen... Generating docs for file install-macs.doxygen... Generating docs for file install-win-bin.doxygen... Generating docs for file install-win.doxygen... Generating docs for file Changelog.doxygen... Generating docs for file ExternalCode.doxygen... Generating docs for file FAQ.doxygen... Generating docs for file KnownDevBugs.doxygen... Generating docs for file Main.doxygen... Generating docs for file Modules.doxygen... Generating docs for file OpenMS_Tutorial_html.doxygen... Generating docs for file PyOpenMS.doxygen... Generating docs for file QuickStart.doxygen... Generating docs for file TOPP.doxygen... Generating docs for file TOPP_Tutorial_html.doxygen... Generating docs for file UTILS.doxygen... Generating docs for file OpenMS_Tutorial.doxygen... Generating docs for file TOPP_advanced.doxygen... Generating docs for file TOPP_concepts.doxygen... Generating docs for file TOPP_scripting.doxygen... Generating docs for file TOPPAS.doxygen... Generating docs for file TOPPAS.doxygen... Generating docs for file TOPPView_calling_topp.doxygen... Generating docs for file TOPPView_interface.doxygen... Generating docs for file INIFileEditor.cpp... Generating docs for file SwathWizard.cpp... Generating docs for file TOPPAS.cpp... Generating docs for file TOPPView.cpp... Generating docs for file INIFileEditorWindow.cpp... Generating docs for file QApplicationTOPP.cpp... Generating docs for file SwathWizardBase.cpp... Generating docs for file TOPPASBase.cpp... Generating docs for file TOPPViewBase.cpp... Generating docs for file BaselineFilter.cpp... Generating docs for file CometAdapter.cpp... Generating docs for file CompNovo.cpp... Generating docs for file CompNovoCID.cpp... Generating docs for file ConsensusID.cpp... Generating docs for file ConsensusMapNormalizer.cpp... Generating docs for file CruxAdapter.cpp... Generating docs for file DatabaseSuitability.cpp... Generating docs for file Decharger.cpp... Generating docs for file DTAExtractor.cpp... Generating docs for file EICExtractor.cpp... Generating docs for file ExecutePipeline.cpp... Generating docs for file ExternalCalibration.cpp... Generating docs for file FalseDiscoveryRate.cpp... Generating docs for file FeatureFinderCentroided.cpp... Generating docs for file FeatureFinderIdentification.cpp... Generating docs for file FeatureFinderIsotopeWavelet.cpp... Generating docs for file FeatureFinderMetabo.cpp... Generating docs for file FeatureFinderMRM.cpp... Generating docs for file FeatureFinderMultiplex.cpp... Generating docs for file FeatureLinkerBase.cpp... Generating docs for file FeatureLinkerLabeled.cpp... Generating docs for file FeatureLinkerUnlabeled.cpp... Generating docs for file FeatureLinkerUnlabeledKD.cpp... Generating docs for file FeatureLinkerUnlabeledQT.cpp... Generating docs for file FidoAdapter.cpp... Generating docs for file FileConverter.cpp... Generating docs for file FileFilter.cpp... Generating docs for file FileInfo.cpp... Generating docs for file FileMerger.cpp... Generating docs for file GenericWrapper.cpp... Generating docs for file GNPSExport.cpp... Generating docs for file HighResPrecursorMassCorrector.cpp... Generating docs for file IDConflictResolver.cpp... Generating docs for file IDFileConverter.cpp... Generating docs for file IDFilter.cpp... Generating docs for file IDMapper.cpp... Generating docs for file IDMerger.cpp... Generating docs for file IDPosteriorErrorProbability.cpp... Generating docs for file IDRipper.cpp... Generating docs for file IDRTCalibration.cpp... Generating docs for file InclusionExclusionListCreator.cpp... Generating docs for file InspectAdapter.cpp... Generating docs for file InternalCalibration.cpp... Generating docs for file IsobaricAnalyzer.cpp... Generating docs for file LuciphorAdapter.cpp... Generating docs for file MapAlignerIdentification.cpp... Generating docs for file MapAlignerPoseClustering.cpp... Generating docs for file MapAlignerSpectrum.cpp... Generating docs for file MapAlignerTreeGuided.cpp... Generating docs for file MapNormalizer.cpp... Generating docs for file MapRTTransformer.cpp... Generating docs for file MapStatistics.cpp... Generating docs for file MaRaClusterAdapter.cpp... Generating docs for file MascotAdapter.cpp... Generating docs for file MascotAdapterOnline.cpp... Generating docs for file MassTraceExtractor.cpp... Generating docs for file MRMMapper.cpp... Generating docs for file MSGFPlusAdapter.cpp... Generating docs for file MyriMatchAdapter.cpp... Generating docs for file MzTabExporter.cpp... Generating docs for file NoiseFilterGaussian.cpp... Generating docs for file NoiseFilterSGolay.cpp... Generating docs for file OMSSAAdapter.cpp... Generating docs for file OpenPepXL.cpp... Generating docs for file OpenPepXLLF.cpp... Generating docs for file OpenSwathAnalyzer.cpp... Generating docs for file OpenSwathAssayGenerator.cpp... Generating docs for file OpenSwathChromatogramExtractor.cpp... Generating docs for file OpenSwathConfidenceScoring.cpp... Generating docs for file OpenSwathDecoyGenerator.cpp... Generating docs for file OpenSwathFeatureXMLToTSV.cpp... Generating docs for file OpenSwathRTNormalizer.cpp... Generating docs for file PeakPickerHiRes.cpp... Generating docs for file PeakPickerWavelet.cpp... Generating docs for file PepNovoAdapter.cpp... Generating docs for file PeptideIndexer.cpp... Generating docs for file PercolatorAdapter.cpp... Generating docs for file PhosphoScoring.cpp... Generating docs for file PrecursorIonSelector.cpp... Generating docs for file PrecursorMassCorrector.cpp... Generating docs for file ProteinInference.cpp... Generating docs for file ProteinQuantifier.cpp... Generating docs for file ProteinResolver.cpp... Generating docs for file PTModel.cpp... Generating docs for file PTPredict.cpp... Generating docs for file QualityControl.cpp... Generating docs for file Resampler.cpp... Generating docs for file RTModel.cpp... Generating docs for file RTPredict.cpp... Generating docs for file SeedListGenerator.cpp... Generating docs for file SpecLibSearcher.cpp... Generating docs for file SpectraFilterBernNorm.cpp... Generating docs for file SpectraFilterMarkerMower.cpp... Generating docs for file SpectraFilterNLargest.cpp... Generating docs for file SpectraFilterNormalizer.cpp... Generating docs for file SpectraFilterParentPeakMower.cpp... Generating docs for file SpectraFilterScaler.cpp... Generating docs for file SpectraFilterSqrtMower.cpp... Generating docs for file SpectraFilterThresholdMower.cpp... Generating docs for file SpectraFilterWindowMower.cpp... Generating docs for file SpectraMerger.cpp... Generating docs for file TextExporter.cpp... Generating docs for file TOFCalibration.cpp... Generating docs for file XFDR.cpp... Generating docs for file XTandemAdapter.cpp... Generating docs for file AccurateMassSearch.cpp... Generating docs for file AssayGeneratorMetabo.cpp... Generating docs for file ClusterMassTraces.cpp... Generating docs for file ClusterMassTracesByPrecursor.cpp... Generating docs for file CVInspector.cpp... Generating docs for file DatabaseFilter.cpp... Generating docs for file DecoyDatabase.cpp... Generating docs for file DeMeanderize.cpp... Generating docs for file Digestor.cpp... Generating docs for file DigestorMotif.cpp... Generating docs for file Epifany.cpp... Generating docs for file ERPairFinder.cpp... Generating docs for file FeatureFinderMetaboIdent.cpp... Generating docs for file FeatureFinderSuperHirn.cpp... Generating docs for file FFEval.cpp... Generating docs for file FuzzyDiff.cpp... Generating docs for file IDDecoyProbability.cpp... Generating docs for file IDExtractor.cpp... Generating docs for file IDMassAccuracy.cpp... Generating docs for file IDScoreSwitcher.cpp... Generating docs for file IDSplitter.cpp... Generating docs for file ImageCreator.cpp... Generating docs for file INIUpdater.cpp... Generating docs for file LabeledEval.cpp... Generating docs for file MassCalculator.cpp... Generating docs for file MetaboliteAdductDecharger.cpp... Generating docs for file MetaboliteSpectralMatcher.cpp... Generating docs for file MetaProSIP.cpp... Generating docs for file MRMPairFinder.cpp... Generating docs for file MRMTransitionGroupPicker.cpp... Generating docs for file MSFraggerAdapter.cpp... Generating docs for file MSSimulator.cpp... Generating docs for file MSstatsConverter.cpp... Generating docs for file MultiplexResolver.cpp... Generating docs for file MzMLSplitter.cpp... Generating docs for file NovorAdapter.cpp... Generating docs for file NucleicAcidSearchEngine.cpp... Generating docs for file OpenMSInfo.cpp... Generating docs for file OpenSwathDIAPreScoring.cpp... Generating docs for file OpenSwathFileSplitter.cpp... Generating docs for file OpenSwathMzMLFileCacher.cpp... Generating docs for file OpenSwathRewriteToFeatureXML.cpp... Generating docs for file OpenSwathWorkflow.cpp... Generating docs for file PeakPickerIterative.cpp... GeneratinFontconfig error: No writable cache directories Fontconfig error: No writable cache directories g docs for file ProteomicsLFQ.cpp... Generating docs for file PSMFeatureExtractor.cpp... Generating docs for file QCCalculator.cpp... Generating docs for file QCEmbedder.cpp... Generating docs for file QCExporter.cpp... Generating docs for file QCExtractor.cpp... Generating docs for file QCImporter.cpp... Generating docs for file QCMerger.cpp... Generating docs for file QCShrinker.cpp... Generating docs for file RNADigestor.cpp... Generating docs for file RNAMassCalculator.cpp... Generating docs for file RNPxlSearch.cpp... Generating docs for file RNPxlXICFilter.cpp... Generating docs for file RTEvaluation.cpp... Generating docs for file SemanticValidator.cpp... Generating docs for file SequenceCoverageCalculator.cpp... Generating docs for file SimpleSearchEngine.cpp... Generating docs for file SiriusAdapter.cpp... Generating docs for file SpecLibCreator.cpp... Generating docs for file SpectraSTSearchAdapter.cpp... Generating docs for file StaticModification.cpp... Generating docs for file SvmTheoreticalSpectrumGeneratorTrainer.cpp... Generating docs for file TargetedFileConverter.cpp... Generating docs for file TICCalculator.cpp... Generating docs for file TransformationEvaluation.cpp... Generating docs for file XMLValidator.cpp... Generating page documentation... Generating docs for page tutorial... Generating docs for page TOPP_advanced... Generating docs for page TOPP_concepts... Generating docs for page TOPP_example_qualitycontrol... Generating docs for page TOPP_general... Generating docs for page TOPP_example_handling... Generating docs for page TOPP_example_signalprocessing... Generating docs for page TOPP_example_id... Generating docs for page TOPP_example_mapalignment... Generating docs for page TOPP_example_featuredetection... Generating docs for page TOPP_example_featuregrouping... Generating docs for page TOPP_example_calibration... Generating docs for page TOPP_example_ppp... Generating docs for page TOPP_example_convert... Generating docs for page TOPPAS_general... Generating docs for page TOPPAS_interface... Generating docs for page TOPPAS_examples... Generating docs for page TOPPView_baseline_reduction... Generating docs for page TOPPView_smoothing... Generating docs for page TOPPView_peakpicking... Generating docs for page TOPPView_feature_detection_centroided... Generating docs for page TOPPView_introduction... Generating docs for page TOPPView_views... Generating docs for page TOPPView_modes... Generating docs for page TOPPView_analysis... Generating docs for page TOPPView_editing... Generating docs for page TOPPView_hotkeys... Generating docs for page ChangeLog... Generating docs for page external_code... Generating docs for page FAQ... Generating docs for page known_dev_bugs... Generating docs for page OpenMS_tutorial... Generating docs for page pyOpenMS... Generating docs for page Quickstart... Generating docs for page TOPP_documentation... Generating docs for page TOPP_tutorial... Generating docs for page TOPPAS_tutorial... Generating docs for page UTILS_documentation... Generating docs for page install_linux_bin... Generating docs for page install_linux... Generating docs for page install_mac_bin... Generating docs for page install_mac... Generating docs for page install_win_bin... Generating docs for page install_win... Generating docs for page TOPP_INIFileEditor... Generating docs for page TOPP_SwathWizard... Generating docs for page TOPP_TOPPAS... Generating docs for page TOPP_TOPPView... Generating docs for page TOPP_BaselineFilter... Generating docs for page TOPP_CometAdapter... Generating docs for page TOPP_CompNovo... Generating docs for page TOPP_CompNovoCID... Generating docs for page TOPP_ConsensusID... Generating docs for page TOPP_ConsensusMapNormalizer... Generating docs for page TOPP_CruxAdapter... Generating docs for page TOPP_DatabaseSuitability... Generating docs for page TOPP_Decharger... Generating docs for page TOPP_DTAExtractor... Generating docs for page TOPP_EICExtractor... Generating docs for page TOPP_ExecutePipeline... Generating docs for page TOPP_ExternalCalibration... Generating docs for page TOPP_FalseDiscoveryRate... Generating docs for page TOPP_FeatureFinderCentroided... Generating docs for page TOPP_FeatureFinderIdentification... Generating docs for page TOPP_FeatureFinderIsotopeWavelet... Generating docs for page TOPP_FeatureFinderMetabo... Generating docs for page TOPP_FeatureFinderMRM... Generating docs for page TOPP_FeatureFinderMultiplex... Generating docs for page TOPP_FeatureLinkerBase... Generating docs for page TOPP_FeatureLinkerLabeled... Generating docs for page TOPP_FeatureLinkerUnlabeled... Generating docs for page TOPP_FeatureLinkerUnlabeledKD... Generating docs for page TOPP_FeatureLinkerUnlabeledQT... Generating docs for page TOPP_FidoAdapter... Generating docs for page TOPP_FileConverter... Generating docs for page TOPP_FileFilter... Generating docs for page TOPP_FileInfo... Generating docs for page TOPP_FileMerger... Generating docs for page TOPP_GenericWrapper... Generating docs for page TOPP_GNPSExport... Generating docs for page TOPP_HighResPrecursorMassCorrector... Generating docs for page TOPP_IDConflictResolver... Generating docs for page TOPP_IDFileConverter... Generating docs for page TOPP_IDFilter... Generating docs for page TOPP_IDMapper... Generating docs for page TOPP_IDMerger... Generating docs for page TOPP_IDPosteriorErrorProbability... Generating docs for page TOPP_IDRipper... Generating docs for page TOPP_IDRTCalibration... Generating docs for page TOPP_InclusionExclusionListCreator... Generating docs for page TOPP_InspectAdapter... Generating docs for page TOPP_InternalCalibration... Generating docs for page TOPP_IsobaricAnalyzer... Generating docs for page TOPP_LuciphorAdapter... Generating docs for page TOPP_MapAlignerIdentification... Generating docs for page TOPP_MapAlignerPoseClustering... Generating docs for page TOPP_MapAlignerSpectrum... Generating docs for page TOPP_MapAlignerTreeGuided... Generating docs for page TOPP_MapNormalizer... Generating docs for page TOPP_MapRTTransformer... Generating docs for page TOPP_MapStatistics... Generating docs for page TOPP_MaRaClusterAdapter... Generating docs for page TOPP_MascotAdapter... Generating docs for page TOPP_MascotAdapterOnline... Generating docs for page TOPP_MassTraceExtractor... Generating docs for page TOPP_MRMMapper... Generating docs for page TOPP_MSGFPlusAdapter... Generating docs for page TOPP_MyriMatchAdapter... Generating docs for page TOPP_MzTabExporter... Generating docs for page TOPP_NoiseFilterGaussian... Generating docs for page TOPP_NoiseFilterSGolay... Generating docs for page TOPP_OMSSAAdapter... Generating docs for page TOPP_OpenPepXL... Generating docs for page TOPP_OpenPepXLLF... Generating docs for page TOPP_OpenSwathAnalyzer... Generating docs for page TOPP_OpenSwathAssayGenerator... Generating docs for page TOPP_OpenSwathChromatogramExtractor... Generating docs for page TOPP_OpenSwathConfidenceScoring... Generating docs for page TOPP_OpenSwathDecoyGenerator... Generating docs for page TOPP_OpenSwathFeatureXMLToTSV... Generating docs for page TOPP_OpenSwathRTNormalizer... Generating docs for page TOPP_PeakPickerHiRes... Generating docs for page TOPP_PeakPickerWavelet... Generating docs for page TOPP_PepNovoAdapter... Generating docs for page TOPP_PeptideIndexer... Generating docs for page TOPP_PercolatorAdapter... Generating docs for page TOPP_PhosphoScoring... Generating docs for page TOPP_PrecursorIonSelector... Generating docs for page TOPP_PrecursorMassCorrector... Generating docs for page TOPP_ProteinInference... Generating docs for page TOPP_ProteinQuantifier... Generating docs for page TOPP_ProteinResolver... Generating docs for page TOPP_PTModel... Generating docs for page TOPP_PTPredict... Generating docs for page TOPP_QualityControl... Generating docs for page TOPP_Resampler... Generating docs for page TOPP_RTModel... Generating docs for page TOPP_RTPredict... Generating docs for page TOPP_SeedListGenerator... Generating docs for page TOPP_SpecLibSearcher... Generating docs for page TOPP_SpectraFilterBernNorm... Generating docs for page TOPP_SpectraFilterMarkerMower... Generating docs for page TOPP_SpectraFilterNLargest... Generating docs for page TOPP_SpectraFilterNormalizer... Generating docs for page TOPP_SpectraFilterParentPeakMower... Generating docs for page TOPP_SpectraFilterScaler... Generating docs for page TOPP_SpectraFilterSqrtMower... Generating docs for page TOPP_SpectraFilterThresholdMower... Generating docs for page TOPP_SpectraFilterWindowMower... Generating docs for page TOPP_SpectraMerger... Generating docs for page TOPP_TextExporter... Generating docs for page TOPP_TOFCalibration... Generating docs for page TOPP_XFDR... Generating docs for page TOPP_XTandemAdapter... Generating docs for page UTILS_AccurateMassSearch... Generating docs for page UTILS_AssayGeneratorMetabo... Generating docs for page UTILS_ClusterMassTraces... Generating docs for page UTILS_ClusterMassTracesByPrecursor... Generating docs for page UTILS_CVInspector... Generating docs for page UTILS_DatabaseFilter... Generating docs for page UTILS_DecoyDatabase... Generating docs for page UTILS_DeMeanderize... Generating docs for page UTILS_Digestor... Generating docs for page UTILS_DigestorMotif... Generating docs for page UTILS_Epifany... Generating docs for page UTILS_ERPairFinder... Generating docs for page UTILS_FeatureFinderMetaboIdent... Generating docs for page UTILS_FeatureFinderSuperHirn... Generating docs for page UTILS_FFEval... Generating docs for page UTILS_FuzzyDiff... Generating docs for page UTILS_IDDecoyProbability... Generating docs for page UTILS_IDExtractor... Generating docs for page UTILS_IDMassAccuracy... Generating docs for page UTILS_IDScoreSwitcher... Generating docs for page UTILS_IDSplitter... Generating docs for page UTILS_ImageCreator... Generating docs for page UTILS_INIUpdater... Generating docs for page UTILS_LabeledEval... Generating docs for page UTILS_MassCalculator... Generating docs for page UTILS_MetaboliteAdductDecharger... Generating docs for page UTILS_MetaboliteSpectralMatcher... Generating docs for page UTILS_MetaProSIP... Generating docs for page UTILS_MRMPairFinder... Generating docs for page UTILS_MRMTransitionGroupPicker... Generating docs for page UTILS_MSFraggerAdapter... Generating docs for page UTILS_MSSimulator... Generating docs for page UTILS_MSstatsConverter... Generating docs for page UTILS_MultiplexResolver... Generating docs for page UTILS_MzMLSplitter... Generating docs for page UTILS_NovorAdapter... Generating docs for page UTILS_NucleicAcidSearchEngine... Generating docs for page UTILS_OpenSwathDIAPreScoring... Generating docs for page UTILS_OpenSwathFileSplitter... Generating docs for page UTILS_OpenSwathMzMLFileCacher... Generating docs for page UTILS_OpenSwathRewriteToFeatureXML... Generating docs for page UTILS_OpenSwathWorkflow... Generating docs for page UTILS_PeakPickerIterative... Generating docs for page UTILS_ProteomicsLFQ... Generating docs for page UTILS_PSMFeatureExtractor... Generating docs for page UTILS_QCCalculator... Generating docs for page UTILS_QCEmbedder... Generating docs for page UTILS_QCExporter... Generating docs for page UTILS_QCExtractor... Generating docs for page UTILS_QCImporter... Generating docs for page UTILS_QCMerger... Generating docs for page UTILS_QCShrinker... Generating docs for page UTILS_RNADigestor... Generating docs for page UTILS_RNAMassCalculator... Generating docs for page UTILS_RNPxlSearch... Generating docs for page UTILS_RNPxlXICFilter... Generating docs for page UTILS_RTEvaluation... Generating docs for page UTILS_SemanticValidator... Generating docs for page UTILS_SequenceCoverageCalculator... Generating docs for page UTILS_SimpleSearchEngine... Generating docs for page UTILS_SiriusAdapter... Generating docs for page UTILS_SpecLibCreator... Generating docs for page UTILS_SpectraSTSearchAdapter... Generating docs for page UTILS_StaticModification... Generating docs for page UTILS_SvmTheoreticalSpectrumGeneratorTrainer... Generating docs for page UTILS_TargetedFileConverter... Generating docs for page UTILS_TICCalculator... Generating docs for page UTILS_TransformationEvaluatioFontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories n... Generating docs for page UTILS_XMLValidator... Generating docs for page todo... Generating docs for page experimental... Generating docs for page deprecated... Generating docs for page bug... Generating docs for page improvement... Generating group documentation... Generating dependency graph for group Math Generating dependency graph for group MathFunctionsStatistics Generating dependency graph for group MathFunctionsMisc Generating dependency graph for group Format Generating dependency graph for group FileIO Generating dependency graph for group Filtering Generating dependency graph for group SpectraPreprocessers Generating dependency graph for group SpectraFilter Generating dependency graph for group PeakMarker Generating dependency graph for group Analysis Generating dependency graph for group SignalProcessing Generating dependency graph for group PeakPicking Generating dependency graph for group FeatureFinder Generating dependency graph for group MapAlignment Generating dependency graph for group FeatureGrouping Generating dependency graph for group Analysis_ID Generating dependency graph for group SpectraClustering Generating dependency graph for group Visual Generating dependency graph for group SpectrumWidgets Generating dependency graph for group TOPPView_elements Generating dependency graph for group TOPPAS_elements Generating dependency graph for group Dialogs Generating class documentation... Generating docs for compound NucleicAcidSearchEngine... Generating docs for nested compound NucleicAcidSearchEngine::HasInvalidLength... Generating docs for nested compound NucleicAcidSearchEngine::PrecursorInfo... Generating docs for compound TOPPBase... Generating docs for compound TOPPGNPSExport... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating docs for namespace OpenMS Generating graph info page... Generating directory documentation... Generating dependency graph for directory doxygen Generating dependency graph for directory install Generating dependency graph for directory OpenMS_tutorial Generating dependency graph for directory public Generating dependency graph for directory TOPP_tutorial Generating index page... Generating main page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating graphical class hierarchy... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... Running dot... Generating dot graphs using 13 parallel threads... Running dot for graph 1/224 Running dot for graph 2/224 Running dot for graph 3/224 Running dot for graph 4/224 Running dot for graph 5/224 Running dot for graph 6/224 Running dot for graph 7/224 Running dot for graph 8/224 Running dot for graph 9/224 Running dot for graph 10/224 Running dot for graph 11/224 Running dot for graph 12/224 Running dot for graph 13/224 Running dot for graph 14/224 Running dot for graph 15/224 Running dot for graph 16/224 Running dot for graph 17/224 Running dot for graph 18/224 Running dot for graph 19/224 Running dot for graph 20/224 Running dot for graph 21/224 Running dot for graph 22/224 Running dot for graph 23/224 Running dot for graph 24/224 Running dot for graph 25/224 Running dot for graph 26/224 Running dot for graph 27/224 Running dot for graph 28/224 Running dot for graph 29/224 Running dot for graph 30/224 Running dot for graph 31/224 Running dot for graph 32/224 Running dot for graph 33/224 Running dot for graph 34/224 Running dot for graph 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writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories ning dot for graph 43/224 Running dot for graph 44/224 Running dot for graph 45/224 Running dot for graph 46/224 Running dot for graph 47/224 Running dot for graph 48/224 Running dot for graph 49/224 Running dot for graph 50/224 Running dot for graph 51/224 Running dot for graph 52/224 Running dot for graph 53/224 Running dot for graph 54/224 Running dot for graph 55/224 Running dot for graph 56/224 Running dot for graph 57/224 Running dot for graph 58/224 Running dot for graph 59/224 Running dot for graph 60/224 Running dot for graph 61/224 Running dot for graph 62/224 Running dot 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Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories Fontconfig error: No writable cache directories graph 181/224 Running dot for graph 182/224 Running dot for graph 183/224 Running dot for graph 184/224 Running dot for graph 185/224 Running dot for graph 186/224 Running dot for graph 187/224 Running dot for graph 188/224 Running dot for graph 189/224 Running dot for graph 190/224 Running dot for graph 191/224 Running dot for graph 192/224 Running dot for graph 193/224 Running dot for graph 194/224 Running dot for graph 195/224 Running dot for graph 196/224 Running dot for graph 197/224 Running dot for graph 198/224 Running dot for graph 199/224 Running dot for graph 200/224 Running dot for graph 201/224 Running dot for graph 202/224 Running dot for graph 203/224 Running dot for graph 204/224 Running dot for graph 205/224 Running dot for graph 206/224 Running dot for graph 207/224 Running dot for graph 208/224 Running dot for graph 209/224 Running dot for graph 210/224 Running dot for graph 211/224 Running dot for graph 212/224 Running dot for graph 213/224 Running dot for graph 214/224 Running dot for graph 215/224 Running dot for graph 216/224 Running dot for graph 217/224 Running dot for graph 218/224 Running dot for graph 219/224 Running dot for graph 220/224 Running dot for graph 221/224 Running dot for graph 222/224 Running dot for graph 223/224 Running dot for graph 224/224 Patching output file 1/440 Patching output file 2/440 Patching output file 3/440 Patching output file 4/440 Patching output file 5/440 Patching output file 6/440 Patching output file 7/440 Patching output file 8/440 Patching output file 9/440 Patching output file 10/440 Patching output file 11/440 Patching output file 12/440 Patching output file 13/440 Patching output file 14/440 Patching output file 15/440 Patching output file 16/440 Patching output file 17/440 Patching output file 18/440 Patching output file 19/440 Patching output file 20/440 Patching output file 21/440 Patching output file 22/440 Patching output file 23/440 Patching output file 24/440 Patching output file 25/440 Patching output file 26/440 Patching output file 27/440 Patching output file 28/440 Patching output file 29/440 Patching output file 30/440 Patching output file 31/440 Patching output file 32/440 Patching output file 33/440 Patching output file 34/440 Patching output file 35/440 Patching output file 36/440 Patching output file 37/440 Patching output file 38/440 Patching output file 39/440 Patching output file 40/440 Patching output file 41/440 Patching output file 42/440 Patching output file 43/440 Patching output file 44/440 Patching output file 45/440 Patching output file 46/440 Patching output file 47/440 Patching output file 48/440 Patching output file 49/440 Patching output file 50/440 Patching output file 51/440 Patching output file 52/440 Patching output file 53/440 Patching output file 54/440 Patching output file 55/440 Patching output file 56/440 Patching output file 57/440 Patching output file 58/440 Patching output file 59/440 Patching output file 60/440 Patching output file 61/440 Patching output file 62/440 Patching output file 63/440 Patching output file 64/440 Patching output file 65/440 Patching output file 66/440 Patching output file 67/440 Patching output file 68/440 Patching output file 69/440 Patching output file 70/440 Patching output file 71/440 Patching output file 72/440 Patching output file 73/440 Patching output file 74/440 Patching output file 75/440 Patching output file 76/440 Patching output file 77/440 Patching output file 78/440 Patching output file 79/440 Patching output file 80/440 Patching output file 81/440 Patching output file 82/440 Patching output file 83/440 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output file 256/440 Patching output file 257/440 Patching output file 258/440 Patching output file 259/440 Patching output file 260/440 Patching output file 261/440 Patching output file 262/440 Patching output file 263/440 Patching output file 264/440 Patching output file 265/440 Patching output file 266/440 Patching output file 267/440 Patching output file 268/440 Patching output file 269/440 Patching output file 270/440 Patching output file 271/440 Patching output file 272/440 Patching output file 273/440 Patching output file 274/440 Patching output file 275/440 Patching output file 276/440 Patching output file 277/440 Patching output file 278/440 Patching output file 279/440 Patching output file 280/440 Patching output file 281/440 Patching output file 282/440 Patching output file 283/440 Patching output file 284/440 Patching output file 285/440 Patching output file 286/440 Patching output file 287/440 Patching output file 288/440 Patching output file 289/440 Patching output file 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Patching output file 325/440 Patching output file 326/440 Patching output file 327/440 Patching output file 328/440 Patching output file 329/440 Patching output file 330/440 Patching output file 331/440 Patching output file 332/440 Patching output file 333/440 Patching output file 334/440 Patching output file 335/440 Patching output file 336/440 Patching output file 337/440 Patching output file 338/440 Patching output file 339/440 Patching output file 340/440 Patching output file 341/440 Patching output file 342/440 Patching output file 343/440 Patching output file 344/440 Patching output file 345/440 Patching output file 346/440 Patching output file 347/440 Patching output file 348/440 Patching output file 349/440 Patching output file 350/440 Patching output file 351/440 Patching output file 352/440 Patching output file 353/440 Patching output file 354/440 Patching output file 355/440 Patching output file 356/440 Patching output file 357/440 Patching output file 358/440 Patching output file 359/440 Patching output file 360/440 Patching output file 361/440 Patching output file 362/440 Patching output file 363/440 Patching output file 364/440 Patching output file 365/440 Patching output file 366/440 Patching output file 367/440 Patching output file 368/440 Patching output file 369/440 Patching output file 370/440 Patching output file 371/440 Patching output file 372/440 Patching output file 373/440 Patching output file 374/440 Patching output file 375/440 Patching output file 376/440 Patching output file 377/440 Patching output file 378/440 Patching output file 379/440 Patching output file 380/440 Patching output file 381/440 Patching output file 382/440 Patching output file 383/440 Patching output file 384/440 Patching output file 385/440 Patching output file 386/440 Patching output file 387/440 Patching output file 388/440 Patching output file 389/440 Patching output file 390/440 Patching output file 391/440 Patching output file 392/440 Patching output file 393/440 Patching output file 394/440 Patching output file 395/440 Patching output file 396/440 Patching output file 397/440 Patching output file 398/440 Patching output file 399/440 Patching output file 400/440 Patching output file 401/440 Patching output file 402/440 Patching output file 403/440 Patching output file 404/440 Patching output file 405/440 Patching output file 406/440 Patching output file 407/440 Patching output file 408/440 Patching output file 409/440 Patching output file 410/440 Patching output file 411/440 Patching output file 412/440 Patching output file 413/440 Patching output file 414/440 Patching output file 415/440 Patching output file 416/440 Patching output file 417/440 Patching output file 418/440 Patching output file 419/440 Patching output file 420/440 Patching output file 421/440 Patching output file 422/440 Patching output file 423/440 Patching output file 424/440 Patching output file 425/440 Patching output file 426/440 Patching output file 427/440 Patching output file 428/440 Patching output file 429/440 Patching output file 430/440 Patching output file 431/440 Patching output file 432/440 Patching output file 433/440 Patching output file 434/440 Patching output file 435/440 Patching output file 436/440 Patching output file 437/440 Patching output file 438/440 Patching output file 439/440 Patching output file 440/440 type lookup cache used 62166/65536 hits=240509 misses=62324 symbol lookup cache used 29239/65536 hits=195776 misses=29239 finished... cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E copy /build/reproducible-path/openms-2.6.0+cleaned1/doc/index.html index.html cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "" cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "The documentation has been successfully created." The documentation has been successfully created. cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "You can now open 'doc/index.html' in a web browser." You can now open 'doc/index.html' in a web browser. cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "We build only a minimal doc since OpenMS was configured without HAS_XSERVER=Off." We build only a minimal doc since OpenMS was configured without HAS_XSERVER=Off. cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "If you want the full doc, either execute cmake --build . --target doc manually" If you want the full doc, either execute cmake --build . --target doc manually cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "or rerun cmake with -DHAS_XSERVER=On." or rerun cmake with -DHAS_XSERVER=On. cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "" make[5]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Built target doc_minimal make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[2]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' # Run the test suite # VERBOSE=1 /usr/bin/make -C /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu test # Prepare the topp.1 man page with all the one-line description got # from calling individually each program in /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/bin with # --help switch. The newly built libs need be in the path so that the # binaries can execute. Same for the shared data path, because the # binaries need it to run. Note the calling in sh ./ with the script # shell being itself executable, otherwise git-buildpackage would # fail. cd /build/reproducible-path/openms-2.6.0+cleaned1/debian && \ PATH=/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/bin:/build/reproducible-path/openms-2.6.0+cleaned1/tools:/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/bin:/build/reproducible-path/openms-2.6.0+cleaned1/tools:/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/bin:/build/reproducible-path/openms-2.6.0+cleaned1/tools:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path \ OPENMS_DATA_PATH=/build/reproducible-path/openms-2.6.0+cleaned1/share/OpenMS/ \ sh ./binaries-extract-one-line-man-desc.sh /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/bin /build/reproducible-path/openms-2.6.0+cleaned1/debian #VERBOSE=1 LD_LIBRARY_PATH=/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/lib/:/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/lib/x86_64-linux-gnu:/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/lib/x86_64-linux-gnu:\ #PATH=/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/bin:/build/reproducible-path/openms-2.6.0+cleaned1/tools:/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/bin:/build/reproducible-path/openms-2.6.0+cleaned1/tools:/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/bin:/build/reproducible-path/openms-2.6.0+cleaned1/tools:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path\ #OPENMS_DATA_PATH=/build/reproducible-path/openms-2.6.0+cleaned1/share/OpenMS/ \ #cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/doxygen && doxygen Doxyfile # There are two files that we do not want to ship because # they exist in their own Debian packages. rm -f /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/usr/share/doc/html/jquery.js make[1]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1' rm -f debian/libopenms-dev.debhelper.log debian/libopenms2.6.0.debhelper.log debian/openms-common.debhelper.log debian/openms-doc.debhelper.log debian/openms.debhelper.log debian/topp.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1' make[1]: 'override_dh_auto_test' is up to date. make[1]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --buildsystem=cmake --no-parallel dh_testroot -O--buildsystem=cmake -O--no-parallel dh_prep -O--buildsystem=cmake -O--no-parallel rm -f -- debian/libopenms2.6.0.substvars debian/libopenms-dev.substvars debian/topp.substvars debian/openms-common.substvars debian/openms-doc.substvars debian/openms.substvars rm -fr -- debian/.debhelper/generated/libopenms2.6.0/ debian/libopenms2.6.0/ debian/tmp/ debian/.debhelper/generated/libopenms-dev/ debian/libopenms-dev/ debian/.debhelper/generated/topp/ debian/topp/ debian/.debhelper/generated/openms-common/ debian/openms-common/ debian/.debhelper/generated/openms-doc/ debian/openms-doc/ debian/.debhelper/generated/openms/ debian/openms/ dh_installdirs -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1' VERBOSE=1 \ OPENMS_DATA_PATH=/build/reproducible-path/openms-2.6.0+cleaned1/share/OpenMS/ \ dh_auto_install install -m0755 -d /build/reproducible-path/openms-2.6.0\+cleaned1/debian/tmp cd obj-x86_64-linux-gnu && make -j1 install DESTDIR=/build/reproducible-path/openms-2.6.0\+cleaned1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/openms-2.6.0+cleaned1 -B/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/build.make src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/build.make src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/openswathalgo/CMakeFiles/OpenSwathAlgo.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 1%] Built target OpenSwathAlgo make -f src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/build.make src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/build.make src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/openms/CMakeFiles/OpenMS_autogen_timestamp_deps.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 1%] Built target OpenMS_autogen_timestamp_deps make -f src/openms/CMakeFiles/OpenMS_autogen.dir/build.make src/openms/CMakeFiles/OpenMS_autogen.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS_autogen.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms/CMakeFiles/OpenMS_autogen.dir/build.make src/openms/CMakeFiles/OpenMS_autogen.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/openms/CMakeFiles/OpenMS_autogen.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 1%] Built target OpenMS_autogen make -f src/openms/CMakeFiles/OpenMS.dir/build.make src/openms/CMakeFiles/OpenMS.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/CMakeFiles/OpenMS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms/CMakeFiles/OpenMS.dir/build.make src/openms/CMakeFiles/OpenMS.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/openms/CMakeFiles/OpenMS.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 53%] Built target OpenMS make -f src/superhirn/CMakeFiles/SuperHirn.dir/build.make src/superhirn/CMakeFiles/SuperHirn.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/CMakeFiles/SuperHirn.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/superhirn/CMakeFiles/SuperHirn.dir/build.make src/superhirn/CMakeFiles/SuperHirn.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/superhirn/CMakeFiles/SuperHirn.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 55%] Built target SuperHirn make -f src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/openms_gui/CMakeFiles/OpenMS_GUI_autogen_timestamp_deps.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 55%] Built target OpenMS_GUI_autogen_timestamp_deps make -f src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/openms_gui/CMakeFiles/OpenMS_GUI_autogen.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 55%] Built target OpenMS_GUI_autogen make -f src/openms_gui/CMakeFiles/OpenMS_GUI.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/OpenMS_GUI.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/OpenMS_GUI.dir/build.make src/openms_gui/CMakeFiles/OpenMS_GUI.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/openms_gui/CMakeFiles/OpenMS_GUI.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 66%] Built target OpenMS_GUI make -f src/openms_gui/CMakeFiles/INIFileEditor_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/INIFileEditor_autogen_timestamp_deps.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/INIFileEditor_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/INIFileEditor_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/INIFileEditor_autogen_timestamp_deps.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/openms_gui/CMakeFiles/INIFileEditor_autogen_timestamp_deps.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 66%] Built target INIFileEditor_autogen_timestamp_deps make -f src/openms_gui/CMakeFiles/INIFileEditor_autogen.dir/build.make src/openms_gui/CMakeFiles/INIFileEditor_autogen.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/INIFileEditor_autogen.dir/DependInfo.cmake "--color=" Dependencies file "src/openms_gui/INIFileEditor_autogen/deps" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/INIFileEditor_autogen.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target INIFileEditor_autogen make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/INIFileEditor_autogen.dir/build.make src/openms_gui/CMakeFiles/INIFileEditor_autogen.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/openms_gui/CMakeFiles/INIFileEditor_autogen.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 66%] Built target INIFileEditor_autogen make -f src/openms_gui/CMakeFiles/INIFileEditor.dir/build.make src/openms_gui/CMakeFiles/INIFileEditor.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/INIFileEditor.dir/DependInfo.cmake "--color=" Dependencies file "src/openms_gui/CMakeFiles/INIFileEditor.dir/INIFileEditor_autogen/mocs_compilation.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/INIFileEditor.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/INIFileEditor.dir/source/VISUAL/APPLICATIONS/GUITOOLS/INIFileEditor.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/INIFileEditor.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target INIFileEditor make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/INIFileEditor.dir/build.make src/openms_gui/CMakeFiles/INIFileEditor.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/openms_gui/CMakeFiles/INIFileEditor.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 66%] Built target INIFileEditor make -f src/openms_gui/CMakeFiles/SwathWizard_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/SwathWizard_autogen_timestamp_deps.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/SwathWizard_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/SwathWizard_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/SwathWizard_autogen_timestamp_deps.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/openms_gui/CMakeFiles/SwathWizard_autogen_timestamp_deps.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 66%] Built target SwathWizard_autogen_timestamp_deps make -f src/openms_gui/CMakeFiles/SwathWizard_autogen.dir/build.make src/openms_gui/CMakeFiles/SwathWizard_autogen.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/SwathWizard_autogen.dir/DependInfo.cmake "--color=" Dependencies file "src/openms_gui/SwathWizard_autogen/deps" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/SwathWizard_autogen.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target SwathWizard_autogen make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/SwathWizard_autogen.dir/build.make src/openms_gui/CMakeFiles/SwathWizard_autogen.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/openms_gui/CMakeFiles/SwathWizard_autogen.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 66%] Built target SwathWizard_autogen make -f src/openms_gui/CMakeFiles/SwathWizard.dir/build.make src/openms_gui/CMakeFiles/SwathWizard.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/SwathWizard.dir/DependInfo.cmake "--color=" Dependencies file "src/openms_gui/CMakeFiles/SwathWizard.dir/SwathWizard_autogen/mocs_compilation.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/SwathWizard.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/SwathWizard.dir/source/VISUAL/APPLICATIONS/GUITOOLS/SwathWizard.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/SwathWizard.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target SwathWizard make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/SwathWizard.dir/build.make src/openms_gui/CMakeFiles/SwathWizard.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/openms_gui/CMakeFiles/SwathWizard.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 66%] Built target SwathWizard make -f src/openms_gui/CMakeFiles/TOPPAS_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/TOPPAS_autogen_timestamp_deps.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPAS_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/TOPPAS_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/TOPPAS_autogen_timestamp_deps.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/openms_gui/CMakeFiles/TOPPAS_autogen_timestamp_deps.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 66%] Built target TOPPAS_autogen_timestamp_deps make -f src/openms_gui/CMakeFiles/TOPPAS_autogen.dir/build.make src/openms_gui/CMakeFiles/TOPPAS_autogen.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPAS_autogen.dir/DependInfo.cmake "--color=" Dependencies file "src/openms_gui/TOPPAS_autogen/deps" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPAS_autogen.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target TOPPAS_autogen make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/TOPPAS_autogen.dir/build.make src/openms_gui/CMakeFiles/TOPPAS_autogen.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/openms_gui/CMakeFiles/TOPPAS_autogen.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 66%] Built target TOPPAS_autogen make -f src/openms_gui/CMakeFiles/TOPPAS.dir/build.make src/openms_gui/CMakeFiles/TOPPAS.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPAS.dir/DependInfo.cmake "--color=" Dependencies file "src/openms_gui/CMakeFiles/TOPPAS.dir/TOPPAS_autogen/mocs_compilation.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPAS.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/TOPPAS.dir/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPAS.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPAS.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target TOPPAS make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/TOPPAS.dir/build.make src/openms_gui/CMakeFiles/TOPPAS.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/openms_gui/CMakeFiles/TOPPAS.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 67%] Built target TOPPAS make -f src/openms_gui/CMakeFiles/TOPPView_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/TOPPView_autogen_timestamp_deps.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPView_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/TOPPView_autogen_timestamp_deps.dir/build.make src/openms_gui/CMakeFiles/TOPPView_autogen_timestamp_deps.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/openms_gui/CMakeFiles/TOPPView_autogen_timestamp_deps.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 67%] Built target TOPPView_autogen_timestamp_deps make -f src/openms_gui/CMakeFiles/TOPPView_autogen.dir/build.make src/openms_gui/CMakeFiles/TOPPView_autogen.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPView_autogen.dir/DependInfo.cmake "--color=" Dependencies file "src/openms_gui/TOPPView_autogen/deps" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPView_autogen.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target TOPPView_autogen make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/TOPPView_autogen.dir/build.make src/openms_gui/CMakeFiles/TOPPView_autogen.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/openms_gui/CMakeFiles/TOPPView_autogen.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 67%] Built target TOPPView_autogen make -f src/openms_gui/CMakeFiles/TOPPView.dir/build.make src/openms_gui/CMakeFiles/TOPPView.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPView.dir/DependInfo.cmake "--color=" Dependencies file "src/openms_gui/CMakeFiles/TOPPView.dir/TOPPView_autogen/mocs_compilation.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPView.dir/compiler_depend.internal". Dependencies file "src/openms_gui/CMakeFiles/TOPPView.dir/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPView.cpp.o.d" is newer than depends file "/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/CMakeFiles/TOPPView.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target TOPPView make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/openms_gui/CMakeFiles/TOPPView.dir/build.make src/openms_gui/CMakeFiles/TOPPView.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/openms_gui/CMakeFiles/TOPPView.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 67%] Built target TOPPView make -f src/topp/CMakeFiles/BaselineFilter.dir/build.make src/topp/CMakeFiles/BaselineFilter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/BaselineFilter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/BaselineFilter.dir/build.make src/topp/CMakeFiles/BaselineFilter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/BaselineFilter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 67%] Built target BaselineFilter make -f src/topp/CMakeFiles/CometAdapter.dir/build.make src/topp/CMakeFiles/CometAdapter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/CometAdapter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/CometAdapter.dir/build.make src/topp/CMakeFiles/CometAdapter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/CometAdapter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target CometAdapter make -f src/topp/CMakeFiles/CompNovo.dir/build.make src/topp/CMakeFiles/CompNovo.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/CompNovo.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/CompNovo.dir/build.make src/topp/CMakeFiles/CompNovo.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/CompNovo.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target CompNovo make -f src/topp/CMakeFiles/CompNovoCID.dir/build.make src/topp/CMakeFiles/CompNovoCID.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/CompNovoCID.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/CompNovoCID.dir/build.make src/topp/CMakeFiles/CompNovoCID.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/CompNovoCID.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target CompNovoCID make -f src/topp/CMakeFiles/ConsensusID.dir/build.make src/topp/CMakeFiles/ConsensusID.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ConsensusID.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/ConsensusID.dir/build.make src/topp/CMakeFiles/ConsensusID.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/ConsensusID.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target ConsensusID make -f src/topp/CMakeFiles/ConsensusMapNormalizer.dir/build.make src/topp/CMakeFiles/ConsensusMapNormalizer.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ConsensusMapNormalizer.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/ConsensusMapNormalizer.dir/build.make src/topp/CMakeFiles/ConsensusMapNormalizer.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/ConsensusMapNormalizer.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target ConsensusMapNormalizer make -f src/topp/CMakeFiles/CruxAdapter.dir/build.make src/topp/CMakeFiles/CruxAdapter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/CruxAdapter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/CruxAdapter.dir/build.make src/topp/CMakeFiles/CruxAdapter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/CruxAdapter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target CruxAdapter make -f src/topp/CMakeFiles/DatabaseSuitability.dir/build.make src/topp/CMakeFiles/DatabaseSuitability.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/DatabaseSuitability.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/DatabaseSuitability.dir/build.make src/topp/CMakeFiles/DatabaseSuitability.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/DatabaseSuitability.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target DatabaseSuitability make -f src/topp/CMakeFiles/Decharger.dir/build.make src/topp/CMakeFiles/Decharger.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/Decharger.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/Decharger.dir/build.make src/topp/CMakeFiles/Decharger.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/Decharger.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target Decharger make -f src/topp/CMakeFiles/DTAExtractor.dir/build.make src/topp/CMakeFiles/DTAExtractor.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/DTAExtractor.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/DTAExtractor.dir/build.make src/topp/CMakeFiles/DTAExtractor.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/DTAExtractor.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target DTAExtractor make -f src/topp/CMakeFiles/EICExtractor.dir/build.make src/topp/CMakeFiles/EICExtractor.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/EICExtractor.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/EICExtractor.dir/build.make src/topp/CMakeFiles/EICExtractor.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/EICExtractor.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target EICExtractor make -f src/topp/CMakeFiles/ExternalCalibration.dir/build.make src/topp/CMakeFiles/ExternalCalibration.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ExternalCalibration.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/ExternalCalibration.dir/build.make src/topp/CMakeFiles/ExternalCalibration.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/ExternalCalibration.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target ExternalCalibration make -f src/topp/CMakeFiles/FalseDiscoveryRate.dir/build.make src/topp/CMakeFiles/FalseDiscoveryRate.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FalseDiscoveryRate.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FalseDiscoveryRate.dir/build.make src/topp/CMakeFiles/FalseDiscoveryRate.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/FalseDiscoveryRate.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target FalseDiscoveryRate make -f src/topp/CMakeFiles/FeatureFinderCentroided.dir/build.make src/topp/CMakeFiles/FeatureFinderCentroided.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureFinderCentroided.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureFinderCentroided.dir/build.make src/topp/CMakeFiles/FeatureFinderCentroided.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/FeatureFinderCentroided.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target FeatureFinderCentroided make -f src/topp/CMakeFiles/FeatureFinderIdentification.dir/build.make src/topp/CMakeFiles/FeatureFinderIdentification.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureFinderIdentification.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureFinderIdentification.dir/build.make src/topp/CMakeFiles/FeatureFinderIdentification.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/FeatureFinderIdentification.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target FeatureFinderIdentification make -f src/topp/CMakeFiles/FeatureFinderIsotopeWavelet.dir/build.make src/topp/CMakeFiles/FeatureFinderIsotopeWavelet.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureFinderIsotopeWavelet.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureFinderIsotopeWavelet.dir/build.make src/topp/CMakeFiles/FeatureFinderIsotopeWavelet.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/FeatureFinderIsotopeWavelet.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target FeatureFinderIsotopeWavelet make -f src/topp/CMakeFiles/FeatureFinderMetabo.dir/build.make src/topp/CMakeFiles/FeatureFinderMetabo.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureFinderMetabo.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureFinderMetabo.dir/build.make src/topp/CMakeFiles/FeatureFinderMetabo.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/FeatureFinderMetabo.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target FeatureFinderMetabo make -f src/topp/CMakeFiles/FeatureFinderMRM.dir/build.make src/topp/CMakeFiles/FeatureFinderMRM.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureFinderMRM.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureFinderMRM.dir/build.make src/topp/CMakeFiles/FeatureFinderMRM.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/FeatureFinderMRM.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target FeatureFinderMRM make -f src/topp/CMakeFiles/FeatureFinderMultiplex.dir/build.make src/topp/CMakeFiles/FeatureFinderMultiplex.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureFinderMultiplex.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureFinderMultiplex.dir/build.make src/topp/CMakeFiles/FeatureFinderMultiplex.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/FeatureFinderMultiplex.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target FeatureFinderMultiplex make -f src/topp/CMakeFiles/FeatureLinkerLabeled.dir/build.make src/topp/CMakeFiles/FeatureLinkerLabeled.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureLinkerLabeled.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureLinkerLabeled.dir/build.make src/topp/CMakeFiles/FeatureLinkerLabeled.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/FeatureLinkerLabeled.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target FeatureLinkerLabeled make -f src/topp/CMakeFiles/FeatureLinkerUnlabeled.dir/build.make src/topp/CMakeFiles/FeatureLinkerUnlabeled.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureLinkerUnlabeled.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureLinkerUnlabeled.dir/build.make src/topp/CMakeFiles/FeatureLinkerUnlabeled.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/FeatureLinkerUnlabeled.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target FeatureLinkerUnlabeled make -f src/topp/CMakeFiles/FeatureLinkerUnlabeledKD.dir/build.make src/topp/CMakeFiles/FeatureLinkerUnlabeledKD.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureLinkerUnlabeledKD.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureLinkerUnlabeledKD.dir/build.make src/topp/CMakeFiles/FeatureLinkerUnlabeledKD.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/FeatureLinkerUnlabeledKD.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 68%] Built target FeatureLinkerUnlabeledKD make -f src/topp/CMakeFiles/FeatureLinkerUnlabeledQT.dir/build.make src/topp/CMakeFiles/FeatureLinkerUnlabeledQT.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FeatureLinkerUnlabeledQT.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FeatureLinkerUnlabeledQT.dir/build.make src/topp/CMakeFiles/FeatureLinkerUnlabeledQT.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/FeatureLinkerUnlabeledQT.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 69%] Built target FeatureLinkerUnlabeledQT make -f src/topp/CMakeFiles/FidoAdapter.dir/build.make src/topp/CMakeFiles/FidoAdapter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FidoAdapter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FidoAdapter.dir/build.make src/topp/CMakeFiles/FidoAdapter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/FidoAdapter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 69%] Built target FidoAdapter make -f src/topp/CMakeFiles/FileConverter.dir/build.make src/topp/CMakeFiles/FileConverter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FileConverter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FileConverter.dir/build.make src/topp/CMakeFiles/FileConverter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/FileConverter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 69%] Built target FileConverter make -f src/topp/CMakeFiles/FileFilter.dir/build.make src/topp/CMakeFiles/FileFilter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FileFilter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FileFilter.dir/build.make src/topp/CMakeFiles/FileFilter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/FileFilter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 69%] Built target FileFilter make -f src/topp/CMakeFiles/FileInfo.dir/build.make src/topp/CMakeFiles/FileInfo.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FileInfo.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FileInfo.dir/build.make src/topp/CMakeFiles/FileInfo.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/FileInfo.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 69%] Built target FileInfo make -f src/topp/CMakeFiles/FileMerger.dir/build.make src/topp/CMakeFiles/FileMerger.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/FileMerger.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/FileMerger.dir/build.make src/topp/CMakeFiles/FileMerger.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/FileMerger.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 69%] Built target FileMerger make -f src/topp/CMakeFiles/GenericWrapper.dir/build.make src/topp/CMakeFiles/GenericWrapper.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/GenericWrapper.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/GenericWrapper.dir/build.make src/topp/CMakeFiles/GenericWrapper.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/GenericWrapper.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 69%] Built target GenericWrapper make -f src/topp/CMakeFiles/GNPSExport.dir/build.make src/topp/CMakeFiles/GNPSExport.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/GNPSExport.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/GNPSExport.dir/build.make src/topp/CMakeFiles/GNPSExport.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/GNPSExport.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 70%] Built target GNPSExport make -f src/topp/CMakeFiles/HighResPrecursorMassCorrector.dir/build.make src/topp/CMakeFiles/HighResPrecursorMassCorrector.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/HighResPrecursorMassCorrector.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/HighResPrecursorMassCorrector.dir/build.make src/topp/CMakeFiles/HighResPrecursorMassCorrector.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/HighResPrecursorMassCorrector.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 70%] Built target HighResPrecursorMassCorrector make -f src/topp/CMakeFiles/IDConflictResolver.dir/build.make src/topp/CMakeFiles/IDConflictResolver.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDConflictResolver.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IDConflictResolver.dir/build.make src/topp/CMakeFiles/IDConflictResolver.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/IDConflictResolver.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 70%] Built target IDConflictResolver make -f src/topp/CMakeFiles/IDFileConverter.dir/build.make src/topp/CMakeFiles/IDFileConverter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDFileConverter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IDFileConverter.dir/build.make src/topp/CMakeFiles/IDFileConverter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/IDFileConverter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 71%] Built target IDFileConverter make -f src/topp/CMakeFiles/IDFilter.dir/build.make src/topp/CMakeFiles/IDFilter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDFilter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IDFilter.dir/build.make src/topp/CMakeFiles/IDFilter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/IDFilter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 71%] Built target IDFilter make -f src/topp/CMakeFiles/IDMapper.dir/build.make src/topp/CMakeFiles/IDMapper.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDMapper.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IDMapper.dir/build.make src/topp/CMakeFiles/IDMapper.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/IDMapper.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 71%] Built target IDMapper make -f src/topp/CMakeFiles/IDMerger.dir/build.make src/topp/CMakeFiles/IDMerger.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDMerger.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IDMerger.dir/build.make src/topp/CMakeFiles/IDMerger.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/IDMerger.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 71%] Built target IDMerger make -f src/topp/CMakeFiles/IDPosteriorErrorProbability.dir/build.make src/topp/CMakeFiles/IDPosteriorErrorProbability.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDPosteriorErrorProbability.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IDPosteriorErrorProbability.dir/build.make src/topp/CMakeFiles/IDPosteriorErrorProbability.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/IDPosteriorErrorProbability.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 71%] Built target IDPosteriorErrorProbability make -f src/topp/CMakeFiles/IDRipper.dir/build.make src/topp/CMakeFiles/IDRipper.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDRipper.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IDRipper.dir/build.make src/topp/CMakeFiles/IDRipper.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/IDRipper.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 72%] Built target IDRipper make -f src/topp/CMakeFiles/IDRTCalibration.dir/build.make src/topp/CMakeFiles/IDRTCalibration.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IDRTCalibration.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IDRTCalibration.dir/build.make src/topp/CMakeFiles/IDRTCalibration.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/IDRTCalibration.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 72%] Built target IDRTCalibration make -f src/topp/CMakeFiles/InclusionExclusionListCreator.dir/build.make src/topp/CMakeFiles/InclusionExclusionListCreator.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/InclusionExclusionListCreator.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/InclusionExclusionListCreator.dir/build.make src/topp/CMakeFiles/InclusionExclusionListCreator.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/InclusionExclusionListCreator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 72%] Built target InclusionExclusionListCreator make -f src/topp/CMakeFiles/InspectAdapter.dir/build.make src/topp/CMakeFiles/InspectAdapter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/InspectAdapter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/InspectAdapter.dir/build.make src/topp/CMakeFiles/InspectAdapter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/InspectAdapter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 72%] Built target InspectAdapter make -f src/topp/CMakeFiles/InternalCalibration.dir/build.make src/topp/CMakeFiles/InternalCalibration.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/InternalCalibration.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/InternalCalibration.dir/build.make src/topp/CMakeFiles/InternalCalibration.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/InternalCalibration.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 72%] Built target InternalCalibration make -f src/topp/CMakeFiles/IsobaricAnalyzer.dir/build.make src/topp/CMakeFiles/IsobaricAnalyzer.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/IsobaricAnalyzer.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/IsobaricAnalyzer.dir/build.make src/topp/CMakeFiles/IsobaricAnalyzer.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/IsobaricAnalyzer.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 72%] Built target IsobaricAnalyzer make -f src/topp/CMakeFiles/LuciphorAdapter.dir/build.make src/topp/CMakeFiles/LuciphorAdapter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/LuciphorAdapter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/LuciphorAdapter.dir/build.make src/topp/CMakeFiles/LuciphorAdapter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/LuciphorAdapter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 72%] Built target LuciphorAdapter make -f src/topp/CMakeFiles/MapAlignerIdentification.dir/build.make src/topp/CMakeFiles/MapAlignerIdentification.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapAlignerIdentification.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MapAlignerIdentification.dir/build.make src/topp/CMakeFiles/MapAlignerIdentification.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/MapAlignerIdentification.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 72%] Built target MapAlignerIdentification make -f src/topp/CMakeFiles/MapAlignerPoseClustering.dir/build.make src/topp/CMakeFiles/MapAlignerPoseClustering.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapAlignerPoseClustering.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MapAlignerPoseClustering.dir/build.make src/topp/CMakeFiles/MapAlignerPoseClustering.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/MapAlignerPoseClustering.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 72%] Built target MapAlignerPoseClustering make -f src/topp/CMakeFiles/MapAlignerSpectrum.dir/build.make src/topp/CMakeFiles/MapAlignerSpectrum.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapAlignerSpectrum.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MapAlignerSpectrum.dir/build.make src/topp/CMakeFiles/MapAlignerSpectrum.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/MapAlignerSpectrum.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 72%] Built target MapAlignerSpectrum make -f src/topp/CMakeFiles/MapAlignerTreeGuided.dir/build.make src/topp/CMakeFiles/MapAlignerTreeGuided.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapAlignerTreeGuided.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MapAlignerTreeGuided.dir/build.make src/topp/CMakeFiles/MapAlignerTreeGuided.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/MapAlignerTreeGuided.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 72%] Built target MapAlignerTreeGuided make -f src/topp/CMakeFiles/MapNormalizer.dir/build.make src/topp/CMakeFiles/MapNormalizer.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapNormalizer.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MapNormalizer.dir/build.make src/topp/CMakeFiles/MapNormalizer.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/MapNormalizer.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 72%] Built target MapNormalizer make -f src/topp/CMakeFiles/MapRTTransformer.dir/build.make src/topp/CMakeFiles/MapRTTransformer.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapRTTransformer.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MapRTTransformer.dir/build.make src/topp/CMakeFiles/MapRTTransformer.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/MapRTTransformer.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 73%] Built target MapRTTransformer make -f src/topp/CMakeFiles/MapStatistics.dir/build.make src/topp/CMakeFiles/MapStatistics.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MapStatistics.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MapStatistics.dir/build.make src/topp/CMakeFiles/MapStatistics.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/MapStatistics.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 73%] Built target MapStatistics make -f src/topp/CMakeFiles/MaRaClusterAdapter.dir/build.make src/topp/CMakeFiles/MaRaClusterAdapter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MaRaClusterAdapter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MaRaClusterAdapter.dir/build.make src/topp/CMakeFiles/MaRaClusterAdapter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/MaRaClusterAdapter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 73%] Built target MaRaClusterAdapter make -f src/topp/CMakeFiles/MascotAdapter.dir/build.make src/topp/CMakeFiles/MascotAdapter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MascotAdapter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MascotAdapter.dir/build.make src/topp/CMakeFiles/MascotAdapter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/MascotAdapter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 73%] Built target MascotAdapter make -f src/topp/CMakeFiles/MascotAdapterOnline.dir/build.make src/topp/CMakeFiles/MascotAdapterOnline.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MascotAdapterOnline.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MascotAdapterOnline.dir/build.make src/topp/CMakeFiles/MascotAdapterOnline.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/MascotAdapterOnline.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 73%] Built target MascotAdapterOnline make -f src/topp/CMakeFiles/MassTraceExtractor.dir/build.make src/topp/CMakeFiles/MassTraceExtractor.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MassTraceExtractor.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MassTraceExtractor.dir/build.make src/topp/CMakeFiles/MassTraceExtractor.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/MassTraceExtractor.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 73%] Built target MassTraceExtractor make -f src/topp/CMakeFiles/MRMMapper.dir/build.make src/topp/CMakeFiles/MRMMapper.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MRMMapper.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MRMMapper.dir/build.make src/topp/CMakeFiles/MRMMapper.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/MRMMapper.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 74%] Built target MRMMapper make -f src/topp/CMakeFiles/MSGFPlusAdapter.dir/build.make src/topp/CMakeFiles/MSGFPlusAdapter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MSGFPlusAdapter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MSGFPlusAdapter.dir/build.make src/topp/CMakeFiles/MSGFPlusAdapter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/MSGFPlusAdapter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 74%] Built target MSGFPlusAdapter make -f src/topp/CMakeFiles/MyriMatchAdapter.dir/build.make src/topp/CMakeFiles/MyriMatchAdapter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MyriMatchAdapter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MyriMatchAdapter.dir/build.make src/topp/CMakeFiles/MyriMatchAdapter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/MyriMatchAdapter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 74%] Built target MyriMatchAdapter make -f src/topp/CMakeFiles/MzTabExporter.dir/build.make src/topp/CMakeFiles/MzTabExporter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/MzTabExporter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/MzTabExporter.dir/build.make src/topp/CMakeFiles/MzTabExporter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/MzTabExporter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 74%] Built target MzTabExporter make -f src/topp/CMakeFiles/NoiseFilterGaussian.dir/build.make src/topp/CMakeFiles/NoiseFilterGaussian.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/NoiseFilterGaussian.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/NoiseFilterGaussian.dir/build.make src/topp/CMakeFiles/NoiseFilterGaussian.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/NoiseFilterGaussian.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 75%] Built target NoiseFilterGaussian make -f src/topp/CMakeFiles/NoiseFilterSGolay.dir/build.make src/topp/CMakeFiles/NoiseFilterSGolay.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/NoiseFilterSGolay.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/NoiseFilterSGolay.dir/build.make src/topp/CMakeFiles/NoiseFilterSGolay.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/NoiseFilterSGolay.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 75%] Built target NoiseFilterSGolay make -f src/topp/CMakeFiles/OMSSAAdapter.dir/build.make src/topp/CMakeFiles/OMSSAAdapter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OMSSAAdapter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OMSSAAdapter.dir/build.make src/topp/CMakeFiles/OMSSAAdapter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/OMSSAAdapter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 75%] Built target OMSSAAdapter make -f src/topp/CMakeFiles/OpenPepXL.dir/build.make src/topp/CMakeFiles/OpenPepXL.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenPepXL.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenPepXL.dir/build.make src/topp/CMakeFiles/OpenPepXL.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/OpenPepXL.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 75%] Built target OpenPepXL make -f src/topp/CMakeFiles/OpenPepXLLF.dir/build.make src/topp/CMakeFiles/OpenPepXLLF.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenPepXLLF.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenPepXLLF.dir/build.make src/topp/CMakeFiles/OpenPepXLLF.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/OpenPepXLLF.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 75%] Built target OpenPepXLLF make -f src/topp/CMakeFiles/OpenSwathAnalyzer.dir/build.make src/topp/CMakeFiles/OpenSwathAnalyzer.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathAnalyzer.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenSwathAnalyzer.dir/build.make src/topp/CMakeFiles/OpenSwathAnalyzer.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/OpenSwathAnalyzer.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 75%] Built target OpenSwathAnalyzer make -f src/topp/CMakeFiles/OpenSwathAssayGenerator.dir/build.make src/topp/CMakeFiles/OpenSwathAssayGenerator.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathAssayGenerator.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenSwathAssayGenerator.dir/build.make src/topp/CMakeFiles/OpenSwathAssayGenerator.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/OpenSwathAssayGenerator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 75%] Built target OpenSwathAssayGenerator make -f src/topp/CMakeFiles/OpenSwathChromatogramExtractor.dir/build.make src/topp/CMakeFiles/OpenSwathChromatogramExtractor.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathChromatogramExtractor.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenSwathChromatogramExtractor.dir/build.make src/topp/CMakeFiles/OpenSwathChromatogramExtractor.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/OpenSwathChromatogramExtractor.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 76%] Built target OpenSwathChromatogramExtractor make -f src/topp/CMakeFiles/OpenSwathConfidenceScoring.dir/build.make src/topp/CMakeFiles/OpenSwathConfidenceScoring.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathConfidenceScoring.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenSwathConfidenceScoring.dir/build.make src/topp/CMakeFiles/OpenSwathConfidenceScoring.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/OpenSwathConfidenceScoring.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 76%] Built target OpenSwathConfidenceScoring make -f src/topp/CMakeFiles/OpenSwathDecoyGenerator.dir/build.make src/topp/CMakeFiles/OpenSwathDecoyGenerator.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathDecoyGenerator.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenSwathDecoyGenerator.dir/build.make src/topp/CMakeFiles/OpenSwathDecoyGenerator.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/OpenSwathDecoyGenerator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 76%] Built target OpenSwathDecoyGenerator make -f src/topp/CMakeFiles/OpenSwathFeatureXMLToTSV.dir/build.make src/topp/CMakeFiles/OpenSwathFeatureXMLToTSV.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathFeatureXMLToTSV.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenSwathFeatureXMLToTSV.dir/build.make src/topp/CMakeFiles/OpenSwathFeatureXMLToTSV.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/OpenSwathFeatureXMLToTSV.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 76%] Built target OpenSwathFeatureXMLToTSV make -f src/topp/CMakeFiles/OpenSwathRTNormalizer.dir/build.make src/topp/CMakeFiles/OpenSwathRTNormalizer.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/OpenSwathRTNormalizer.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/OpenSwathRTNormalizer.dir/build.make src/topp/CMakeFiles/OpenSwathRTNormalizer.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/OpenSwathRTNormalizer.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 77%] Built target OpenSwathRTNormalizer make -f src/topp/CMakeFiles/PeakPickerHiRes.dir/build.make src/topp/CMakeFiles/PeakPickerHiRes.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PeakPickerHiRes.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PeakPickerHiRes.dir/build.make src/topp/CMakeFiles/PeakPickerHiRes.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/PeakPickerHiRes.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 78%] Built target PeakPickerHiRes make -f src/topp/CMakeFiles/PeakPickerWavelet.dir/build.make src/topp/CMakeFiles/PeakPickerWavelet.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PeakPickerWavelet.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PeakPickerWavelet.dir/build.make src/topp/CMakeFiles/PeakPickerWavelet.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/PeakPickerWavelet.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 78%] Built target PeakPickerWavelet make -f src/topp/CMakeFiles/PepNovoAdapter.dir/build.make src/topp/CMakeFiles/PepNovoAdapter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PepNovoAdapter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PepNovoAdapter.dir/build.make src/topp/CMakeFiles/PepNovoAdapter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/PepNovoAdapter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 78%] Built target PepNovoAdapter make -f src/topp/CMakeFiles/PeptideIndexer.dir/build.make src/topp/CMakeFiles/PeptideIndexer.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PeptideIndexer.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PeptideIndexer.dir/build.make src/topp/CMakeFiles/PeptideIndexer.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/PeptideIndexer.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 78%] Built target PeptideIndexer make -f src/topp/CMakeFiles/PercolatorAdapter.dir/build.make src/topp/CMakeFiles/PercolatorAdapter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PercolatorAdapter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PercolatorAdapter.dir/build.make src/topp/CMakeFiles/PercolatorAdapter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/PercolatorAdapter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 78%] Built target PercolatorAdapter make -f src/topp/CMakeFiles/PhosphoScoring.dir/build.make src/topp/CMakeFiles/PhosphoScoring.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PhosphoScoring.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PhosphoScoring.dir/build.make src/topp/CMakeFiles/PhosphoScoring.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/PhosphoScoring.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 78%] Built target PhosphoScoring make -f src/topp/CMakeFiles/PrecursorIonSelector.dir/build.make src/topp/CMakeFiles/PrecursorIonSelector.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PrecursorIonSelector.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PrecursorIonSelector.dir/build.make src/topp/CMakeFiles/PrecursorIonSelector.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/PrecursorIonSelector.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 79%] Built target PrecursorIonSelector make -f src/topp/CMakeFiles/PrecursorMassCorrector.dir/build.make src/topp/CMakeFiles/PrecursorMassCorrector.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PrecursorMassCorrector.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PrecursorMassCorrector.dir/build.make src/topp/CMakeFiles/PrecursorMassCorrector.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/PrecursorMassCorrector.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 79%] Built target PrecursorMassCorrector make -f src/topp/CMakeFiles/ProteinInference.dir/build.make src/topp/CMakeFiles/ProteinInference.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ProteinInference.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/ProteinInference.dir/build.make src/topp/CMakeFiles/ProteinInference.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/ProteinInference.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 79%] Built target ProteinInference make -f src/topp/CMakeFiles/ProteinQuantifier.dir/build.make src/topp/CMakeFiles/ProteinQuantifier.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ProteinQuantifier.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/ProteinQuantifier.dir/build.make src/topp/CMakeFiles/ProteinQuantifier.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/ProteinQuantifier.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 79%] Built target ProteinQuantifier make -f src/topp/CMakeFiles/ProteinResolver.dir/build.make src/topp/CMakeFiles/ProteinResolver.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ProteinResolver.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/ProteinResolver.dir/build.make src/topp/CMakeFiles/ProteinResolver.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/ProteinResolver.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 79%] Built target ProteinResolver make -f src/topp/CMakeFiles/PTModel.dir/build.make src/topp/CMakeFiles/PTModel.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PTModel.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PTModel.dir/build.make src/topp/CMakeFiles/PTModel.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/PTModel.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 79%] Built target PTModel make -f src/topp/CMakeFiles/PTPredict.dir/build.make src/topp/CMakeFiles/PTPredict.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/PTPredict.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/PTPredict.dir/build.make src/topp/CMakeFiles/PTPredict.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/PTPredict.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 79%] Built target PTPredict make -f src/topp/CMakeFiles/QualityControl.dir/build.make src/topp/CMakeFiles/QualityControl.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/QualityControl.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/QualityControl.dir/build.make src/topp/CMakeFiles/QualityControl.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/QualityControl.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target QualityControl make -f src/topp/CMakeFiles/RTModel.dir/build.make src/topp/CMakeFiles/RTModel.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/RTModel.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/RTModel.dir/build.make src/topp/CMakeFiles/RTModel.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/RTModel.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 80%] Built target RTModel make -f src/topp/CMakeFiles/RTPredict.dir/build.make src/topp/CMakeFiles/RTPredict.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/RTPredict.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/RTPredict.dir/build.make src/topp/CMakeFiles/RTPredict.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/RTPredict.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 81%] Built target RTPredict make -f src/topp/CMakeFiles/SeedListGenerator.dir/build.make src/topp/CMakeFiles/SeedListGenerator.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SeedListGenerator.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SeedListGenerator.dir/build.make src/topp/CMakeFiles/SeedListGenerator.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/SeedListGenerator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 81%] Built target SeedListGenerator make -f src/topp/CMakeFiles/SpecLibSearcher.dir/build.make src/topp/CMakeFiles/SpecLibSearcher.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpecLibSearcher.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpecLibSearcher.dir/build.make src/topp/CMakeFiles/SpecLibSearcher.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/SpecLibSearcher.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 81%] Built target SpecLibSearcher make -f src/topp/CMakeFiles/SpectraFilterBernNorm.dir/build.make src/topp/CMakeFiles/SpectraFilterBernNorm.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterBernNorm.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterBernNorm.dir/build.make src/topp/CMakeFiles/SpectraFilterBernNorm.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/SpectraFilterBernNorm.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 81%] Built target SpectraFilterBernNorm make -f src/topp/CMakeFiles/SpectraFilterMarkerMower.dir/build.make src/topp/CMakeFiles/SpectraFilterMarkerMower.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterMarkerMower.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterMarkerMower.dir/build.make src/topp/CMakeFiles/SpectraFilterMarkerMower.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/SpectraFilterMarkerMower.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 81%] Built target SpectraFilterMarkerMower make -f src/topp/CMakeFiles/SpectraFilterNLargest.dir/build.make src/topp/CMakeFiles/SpectraFilterNLargest.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterNLargest.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterNLargest.dir/build.make src/topp/CMakeFiles/SpectraFilterNLargest.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/SpectraFilterNLargest.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 81%] Built target SpectraFilterNLargest make -f src/topp/CMakeFiles/SpectraFilterNormalizer.dir/build.make src/topp/CMakeFiles/SpectraFilterNormalizer.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterNormalizer.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterNormalizer.dir/build.make src/topp/CMakeFiles/SpectraFilterNormalizer.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/SpectraFilterNormalizer.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 81%] Built target SpectraFilterNormalizer make -f src/topp/CMakeFiles/SpectraFilterParentPeakMower.dir/build.make src/topp/CMakeFiles/SpectraFilterParentPeakMower.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterParentPeakMower.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterParentPeakMower.dir/build.make src/topp/CMakeFiles/SpectraFilterParentPeakMower.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/SpectraFilterParentPeakMower.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target SpectraFilterParentPeakMower make -f src/topp/CMakeFiles/SpectraFilterScaler.dir/build.make src/topp/CMakeFiles/SpectraFilterScaler.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterScaler.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterScaler.dir/build.make src/topp/CMakeFiles/SpectraFilterScaler.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/SpectraFilterScaler.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target SpectraFilterScaler make -f src/topp/CMakeFiles/SpectraFilterSqrtMower.dir/build.make src/topp/CMakeFiles/SpectraFilterSqrtMower.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterSqrtMower.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterSqrtMower.dir/build.make src/topp/CMakeFiles/SpectraFilterSqrtMower.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/SpectraFilterSqrtMower.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target SpectraFilterSqrtMower make -f src/topp/CMakeFiles/SpectraFilterThresholdMower.dir/build.make src/topp/CMakeFiles/SpectraFilterThresholdMower.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterThresholdMower.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterThresholdMower.dir/build.make src/topp/CMakeFiles/SpectraFilterThresholdMower.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/SpectraFilterThresholdMower.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target SpectraFilterThresholdMower make -f src/topp/CMakeFiles/SpectraFilterWindowMower.dir/build.make src/topp/CMakeFiles/SpectraFilterWindowMower.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraFilterWindowMower.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraFilterWindowMower.dir/build.make src/topp/CMakeFiles/SpectraFilterWindowMower.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/SpectraFilterWindowMower.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target SpectraFilterWindowMower make -f src/topp/CMakeFiles/SpectraMerger.dir/build.make src/topp/CMakeFiles/SpectraMerger.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/SpectraMerger.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/SpectraMerger.dir/build.make src/topp/CMakeFiles/SpectraMerger.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/SpectraMerger.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 82%] Built target SpectraMerger make -f src/topp/CMakeFiles/TextExporter.dir/build.make src/topp/CMakeFiles/TextExporter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/TextExporter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/TextExporter.dir/build.make src/topp/CMakeFiles/TextExporter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/TextExporter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 83%] Built target TextExporter make -f src/topp/CMakeFiles/TOFCalibration.dir/build.make src/topp/CMakeFiles/TOFCalibration.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/TOFCalibration.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/TOFCalibration.dir/build.make src/topp/CMakeFiles/TOFCalibration.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/TOFCalibration.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 83%] Built target TOFCalibration make -f src/topp/CMakeFiles/XFDR.dir/build.make src/topp/CMakeFiles/XFDR.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/XFDR.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/XFDR.dir/build.make src/topp/CMakeFiles/XFDR.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/XFDR.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Built target XFDR make -f src/topp/CMakeFiles/XTandemAdapter.dir/build.make src/topp/CMakeFiles/XTandemAdapter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/XTandemAdapter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/XTandemAdapter.dir/build.make src/topp/CMakeFiles/XTandemAdapter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/XTandemAdapter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Built target XTandemAdapter make -f src/topp/CMakeFiles/ExecutePipeline.dir/build.make src/topp/CMakeFiles/ExecutePipeline.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/ExecutePipeline.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/ExecutePipeline.dir/build.make src/topp/CMakeFiles/ExecutePipeline.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/ExecutePipeline.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Built target ExecutePipeline make -f src/topp/CMakeFiles/Resampler.dir/build.make src/topp/CMakeFiles/Resampler.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/Resampler.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/Resampler.dir/build.make src/topp/CMakeFiles/Resampler.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/Resampler.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Built target Resampler make -f src/utils/CMakeFiles/AccurateMassSearch.dir/build.make src/utils/CMakeFiles/AccurateMassSearch.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/AccurateMassSearch.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/AccurateMassSearch.dir/build.make src/utils/CMakeFiles/AccurateMassSearch.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/AccurateMassSearch.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Built target AccurateMassSearch make -f src/utils/CMakeFiles/AssayGeneratorMetabo.dir/build.make src/utils/CMakeFiles/AssayGeneratorMetabo.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/AssayGeneratorMetabo.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/AssayGeneratorMetabo.dir/build.make src/utils/CMakeFiles/AssayGeneratorMetabo.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/AssayGeneratorMetabo.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Built target AssayGeneratorMetabo make -f src/utils/CMakeFiles/ClusterMassTraces.dir/build.make src/utils/CMakeFiles/ClusterMassTraces.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/ClusterMassTraces.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/ClusterMassTraces.dir/build.make src/utils/CMakeFiles/ClusterMassTraces.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/ClusterMassTraces.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Built target ClusterMassTraces make -f src/utils/CMakeFiles/ClusterMassTracesByPrecursor.dir/build.make src/utils/CMakeFiles/ClusterMassTracesByPrecursor.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/ClusterMassTracesByPrecursor.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/ClusterMassTracesByPrecursor.dir/build.make src/utils/CMakeFiles/ClusterMassTracesByPrecursor.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/ClusterMassTracesByPrecursor.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Built target ClusterMassTracesByPrecursor make -f src/utils/CMakeFiles/CVInspector.dir/build.make src/utils/CMakeFiles/CVInspector.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/CVInspector.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/CVInspector.dir/build.make src/utils/CMakeFiles/CVInspector.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/CVInspector.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 84%] Built target CVInspector make -f src/utils/CMakeFiles/DatabaseFilter.dir/build.make src/utils/CMakeFiles/DatabaseFilter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/DatabaseFilter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/DatabaseFilter.dir/build.make src/utils/CMakeFiles/DatabaseFilter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/DatabaseFilter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Built target DatabaseFilter make -f src/utils/CMakeFiles/DecoyDatabase.dir/build.make src/utils/CMakeFiles/DecoyDatabase.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/DecoyDatabase.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/DecoyDatabase.dir/build.make src/utils/CMakeFiles/DecoyDatabase.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/DecoyDatabase.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Built target DecoyDatabase make -f src/utils/CMakeFiles/DeMeanderize.dir/build.make src/utils/CMakeFiles/DeMeanderize.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/DeMeanderize.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/DeMeanderize.dir/build.make src/utils/CMakeFiles/DeMeanderize.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/DeMeanderize.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 85%] Built target DeMeanderize make -f src/utils/CMakeFiles/Digestor.dir/build.make src/utils/CMakeFiles/Digestor.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/Digestor.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/Digestor.dir/build.make src/utils/CMakeFiles/Digestor.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/Digestor.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Built target Digestor make -f src/utils/CMakeFiles/DigestorMotif.dir/build.make src/utils/CMakeFiles/DigestorMotif.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/DigestorMotif.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/DigestorMotif.dir/build.make src/utils/CMakeFiles/DigestorMotif.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/DigestorMotif.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Built target DigestorMotif make -f src/utils/CMakeFiles/Epifany.dir/build.make src/utils/CMakeFiles/Epifany.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/Epifany.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/Epifany.dir/build.make src/utils/CMakeFiles/Epifany.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/Epifany.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Built target Epifany make -f src/utils/CMakeFiles/ERPairFinder.dir/build.make src/utils/CMakeFiles/ERPairFinder.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/ERPairFinder.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/ERPairFinder.dir/build.make src/utils/CMakeFiles/ERPairFinder.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/ERPairFinder.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 86%] Built target ERPairFinder make -f src/utils/CMakeFiles/FeatureFinderMetaboIdent.dir/build.make src/utils/CMakeFiles/FeatureFinderMetaboIdent.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/FeatureFinderMetaboIdent.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/FeatureFinderMetaboIdent.dir/build.make src/utils/CMakeFiles/FeatureFinderMetaboIdent.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/FeatureFinderMetaboIdent.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 87%] Built target FeatureFinderMetaboIdent make -f src/utils/CMakeFiles/FeatureFinderSuperHirn.dir/build.make src/utils/CMakeFiles/FeatureFinderSuperHirn.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/FeatureFinderSuperHirn.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/FeatureFinderSuperHirn.dir/build.make src/utils/CMakeFiles/FeatureFinderSuperHirn.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/FeatureFinderSuperHirn.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 87%] Built target FeatureFinderSuperHirn make -f src/utils/CMakeFiles/FFEval.dir/build.make src/utils/CMakeFiles/FFEval.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/FFEval.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/FFEval.dir/build.make src/utils/CMakeFiles/FFEval.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/FFEval.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Built target FFEval make -f src/utils/CMakeFiles/FuzzyDiff.dir/build.make src/utils/CMakeFiles/FuzzyDiff.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/FuzzyDiff.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/FuzzyDiff.dir/build.make src/utils/CMakeFiles/FuzzyDiff.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/FuzzyDiff.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Built target FuzzyDiff make -f src/utils/CMakeFiles/IDDecoyProbability.dir/build.make src/utils/CMakeFiles/IDDecoyProbability.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/IDDecoyProbability.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/IDDecoyProbability.dir/build.make src/utils/CMakeFiles/IDDecoyProbability.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/IDDecoyProbability.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Built target IDDecoyProbability make -f src/utils/CMakeFiles/IDExtractor.dir/build.make src/utils/CMakeFiles/IDExtractor.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/IDExtractor.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/IDExtractor.dir/build.make src/utils/CMakeFiles/IDExtractor.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/IDExtractor.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Built target IDExtractor make -f src/utils/CMakeFiles/IDMassAccuracy.dir/build.make src/utils/CMakeFiles/IDMassAccuracy.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/IDMassAccuracy.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/IDMassAccuracy.dir/build.make src/utils/CMakeFiles/IDMassAccuracy.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/IDMassAccuracy.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Built target IDMassAccuracy make -f src/utils/CMakeFiles/IDScoreSwitcher.dir/build.make src/utils/CMakeFiles/IDScoreSwitcher.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/IDScoreSwitcher.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/IDScoreSwitcher.dir/build.make src/utils/CMakeFiles/IDScoreSwitcher.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/IDScoreSwitcher.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Built target IDScoreSwitcher make -f src/utils/CMakeFiles/IDSplitter.dir/build.make src/utils/CMakeFiles/IDSplitter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/IDSplitter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/IDSplitter.dir/build.make src/utils/CMakeFiles/IDSplitter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/IDSplitter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Built target IDSplitter make -f src/utils/CMakeFiles/LabeledEval.dir/build.make src/utils/CMakeFiles/LabeledEval.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/LabeledEval.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/LabeledEval.dir/build.make src/utils/CMakeFiles/LabeledEval.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/LabeledEval.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Built target LabeledEval make -f src/utils/CMakeFiles/MassCalculator.dir/build.make src/utils/CMakeFiles/MassCalculator.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MassCalculator.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MassCalculator.dir/build.make src/utils/CMakeFiles/MassCalculator.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/MassCalculator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 88%] Built target MassCalculator make -f src/utils/CMakeFiles/MetaboliteAdductDecharger.dir/build.make src/utils/CMakeFiles/MetaboliteAdductDecharger.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MetaboliteAdductDecharger.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MetaboliteAdductDecharger.dir/build.make src/utils/CMakeFiles/MetaboliteAdductDecharger.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/MetaboliteAdductDecharger.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 89%] Built target MetaboliteAdductDecharger make -f src/utils/CMakeFiles/MetaboliteSpectralMatcher.dir/build.make src/utils/CMakeFiles/MetaboliteSpectralMatcher.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MetaboliteSpectralMatcher.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MetaboliteSpectralMatcher.dir/build.make src/utils/CMakeFiles/MetaboliteSpectralMatcher.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/MetaboliteSpectralMatcher.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 89%] Built target MetaboliteSpectralMatcher make -f src/utils/CMakeFiles/MetaProSIP.dir/build.make src/utils/CMakeFiles/MetaProSIP.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MetaProSIP.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MetaProSIP.dir/build.make src/utils/CMakeFiles/MetaProSIP.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/MetaProSIP.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 89%] Built target MetaProSIP make -f src/utils/CMakeFiles/MRMPairFinder.dir/build.make src/utils/CMakeFiles/MRMPairFinder.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MRMPairFinder.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MRMPairFinder.dir/build.make src/utils/CMakeFiles/MRMPairFinder.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/MRMPairFinder.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 89%] Built target MRMPairFinder make -f src/utils/CMakeFiles/MSFraggerAdapter.dir/build.make src/utils/CMakeFiles/MSFraggerAdapter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MSFraggerAdapter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MSFraggerAdapter.dir/build.make src/utils/CMakeFiles/MSFraggerAdapter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/MSFraggerAdapter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 89%] Built target MSFraggerAdapter make -f src/utils/CMakeFiles/MSSimulator.dir/build.make src/utils/CMakeFiles/MSSimulator.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MSSimulator.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MSSimulator.dir/build.make src/utils/CMakeFiles/MSSimulator.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/MSSimulator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 89%] Built target MSSimulator make -f src/utils/CMakeFiles/MSstatsConverter.dir/build.make src/utils/CMakeFiles/MSstatsConverter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MSstatsConverter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MSstatsConverter.dir/build.make src/utils/CMakeFiles/MSstatsConverter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/MSstatsConverter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Built target MSstatsConverter make -f src/utils/CMakeFiles/MultiplexResolver.dir/build.make src/utils/CMakeFiles/MultiplexResolver.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MultiplexResolver.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MultiplexResolver.dir/build.make src/utils/CMakeFiles/MultiplexResolver.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/MultiplexResolver.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Built target MultiplexResolver make -f src/utils/CMakeFiles/MzMLSplitter.dir/build.make src/utils/CMakeFiles/MzMLSplitter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MzMLSplitter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MzMLSplitter.dir/build.make src/utils/CMakeFiles/MzMLSplitter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/MzMLSplitter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Built target MzMLSplitter make -f src/utils/CMakeFiles/NovorAdapter.dir/build.make src/utils/CMakeFiles/NovorAdapter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/NovorAdapter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/NovorAdapter.dir/build.make src/utils/CMakeFiles/NovorAdapter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/NovorAdapter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Built target NovorAdapter make -f src/utils/CMakeFiles/NucleicAcidSearchEngine.dir/build.make src/utils/CMakeFiles/NucleicAcidSearchEngine.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/NucleicAcidSearchEngine.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/NucleicAcidSearchEngine.dir/build.make src/utils/CMakeFiles/NucleicAcidSearchEngine.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/NucleicAcidSearchEngine.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Built target NucleicAcidSearchEngine make -f src/utils/CMakeFiles/OpenMSInfo.dir/build.make src/utils/CMakeFiles/OpenMSInfo.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/OpenMSInfo.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/OpenMSInfo.dir/build.make src/utils/CMakeFiles/OpenMSInfo.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/OpenMSInfo.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Built target OpenMSInfo make -f src/utils/CMakeFiles/PeakPickerIterative.dir/build.make src/utils/CMakeFiles/PeakPickerIterative.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/PeakPickerIterative.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/PeakPickerIterative.dir/build.make src/utils/CMakeFiles/PeakPickerIterative.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/PeakPickerIterative.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Built target PeakPickerIterative make -f src/utils/CMakeFiles/PSMFeatureExtractor.dir/build.make src/utils/CMakeFiles/PSMFeatureExtractor.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/PSMFeatureExtractor.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/PSMFeatureExtractor.dir/build.make src/utils/CMakeFiles/PSMFeatureExtractor.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/PSMFeatureExtractor.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Built target PSMFeatureExtractor make -f src/utils/CMakeFiles/QCCalculator.dir/build.make src/utils/CMakeFiles/QCCalculator.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCCalculator.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/QCCalculator.dir/build.make src/utils/CMakeFiles/QCCalculator.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/QCCalculator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 90%] Built target QCCalculator make -f src/utils/CMakeFiles/QCEmbedder.dir/build.make src/utils/CMakeFiles/QCEmbedder.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCEmbedder.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/QCEmbedder.dir/build.make src/utils/CMakeFiles/QCEmbedder.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/QCEmbedder.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 91%] Built target QCEmbedder make -f src/utils/CMakeFiles/QCExporter.dir/build.make src/utils/CMakeFiles/QCExporter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCExporter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/QCExporter.dir/build.make src/utils/CMakeFiles/QCExporter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/QCExporter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 91%] Built target QCExporter make -f src/utils/CMakeFiles/QCExtractor.dir/build.make src/utils/CMakeFiles/QCExtractor.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCExtractor.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/QCExtractor.dir/build.make src/utils/CMakeFiles/QCExtractor.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/QCExtractor.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 91%] Built target QCExtractor make -f src/utils/CMakeFiles/QCImporter.dir/build.make src/utils/CMakeFiles/QCImporter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCImporter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/QCImporter.dir/build.make src/utils/CMakeFiles/QCImporter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/QCImporter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 91%] Built target QCImporter make -f src/utils/CMakeFiles/QCMerger.dir/build.make src/utils/CMakeFiles/QCMerger.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCMerger.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/QCMerger.dir/build.make src/utils/CMakeFiles/QCMerger.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/QCMerger.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 91%] Built target QCMerger make -f src/utils/CMakeFiles/QCShrinker.dir/build.make src/utils/CMakeFiles/QCShrinker.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/QCShrinker.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/QCShrinker.dir/build.make src/utils/CMakeFiles/QCShrinker.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/QCShrinker.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 91%] Built target QCShrinker make -f src/utils/CMakeFiles/ProteomicsLFQ.dir/build.make src/utils/CMakeFiles/ProteomicsLFQ.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/ProteomicsLFQ.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/ProteomicsLFQ.dir/build.make src/utils/CMakeFiles/ProteomicsLFQ.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/ProteomicsLFQ.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 91%] Built target ProteomicsLFQ make -f src/utils/CMakeFiles/RNADigestor.dir/build.make src/utils/CMakeFiles/RNADigestor.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/RNADigestor.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/RNADigestor.dir/build.make src/utils/CMakeFiles/RNADigestor.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/RNADigestor.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 91%] Built target RNADigestor make -f src/utils/CMakeFiles/RNAMassCalculator.dir/build.make src/utils/CMakeFiles/RNAMassCalculator.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/RNAMassCalculator.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/RNAMassCalculator.dir/build.make src/utils/CMakeFiles/RNAMassCalculator.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/RNAMassCalculator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 91%] Built target RNAMassCalculator make -f src/utils/CMakeFiles/RNPxlXICFilter.dir/build.make src/utils/CMakeFiles/RNPxlXICFilter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/RNPxlXICFilter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/RNPxlXICFilter.dir/build.make src/utils/CMakeFiles/RNPxlXICFilter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/RNPxlXICFilter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 91%] Built target RNPxlXICFilter make -f src/utils/CMakeFiles/RNPxlSearch.dir/build.make src/utils/CMakeFiles/RNPxlSearch.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/RNPxlSearch.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/RNPxlSearch.dir/build.make src/utils/CMakeFiles/RNPxlSearch.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/RNPxlSearch.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 91%] Built target RNPxlSearch make -f src/utils/CMakeFiles/RTEvaluation.dir/build.make src/utils/CMakeFiles/RTEvaluation.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/RTEvaluation.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/RTEvaluation.dir/build.make src/utils/CMakeFiles/RTEvaluation.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/RTEvaluation.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 91%] Built target RTEvaluation make -f src/utils/CMakeFiles/SemanticValidator.dir/build.make src/utils/CMakeFiles/SemanticValidator.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SemanticValidator.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/SemanticValidator.dir/build.make src/utils/CMakeFiles/SemanticValidator.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/SemanticValidator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 91%] Built target SemanticValidator make -f src/utils/CMakeFiles/SequenceCoverageCalculator.dir/build.make src/utils/CMakeFiles/SequenceCoverageCalculator.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SequenceCoverageCalculator.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/SequenceCoverageCalculator.dir/build.make src/utils/CMakeFiles/SequenceCoverageCalculator.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/SequenceCoverageCalculator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 91%] Built target SequenceCoverageCalculator make -f src/utils/CMakeFiles/SimpleSearchEngine.dir/build.make src/utils/CMakeFiles/SimpleSearchEngine.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SimpleSearchEngine.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/SimpleSearchEngine.dir/build.make src/utils/CMakeFiles/SimpleSearchEngine.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/SimpleSearchEngine.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 91%] Built target SimpleSearchEngine make -f src/utils/CMakeFiles/SiriusAdapter.dir/build.make src/utils/CMakeFiles/SiriusAdapter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SiriusAdapter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/SiriusAdapter.dir/build.make src/utils/CMakeFiles/SiriusAdapter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/SiriusAdapter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 91%] Built target SiriusAdapter make -f src/utils/CMakeFiles/SpecLibCreator.dir/build.make src/utils/CMakeFiles/SpecLibCreator.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SpecLibCreator.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/SpecLibCreator.dir/build.make src/utils/CMakeFiles/SpecLibCreator.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/SpecLibCreator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Built target SpecLibCreator make -f src/utils/CMakeFiles/SpectraSTSearchAdapter.dir/build.make src/utils/CMakeFiles/SpectraSTSearchAdapter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SpectraSTSearchAdapter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/SpectraSTSearchAdapter.dir/build.make src/utils/CMakeFiles/SpectraSTSearchAdapter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/SpectraSTSearchAdapter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 92%] Built target SpectraSTSearchAdapter make -f src/utils/CMakeFiles/StaticModification.dir/build.make src/utils/CMakeFiles/StaticModification.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/StaticModification.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/StaticModification.dir/build.make src/utils/CMakeFiles/StaticModification.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/StaticModification.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target StaticModification make -f src/utils/CMakeFiles/SvmTheoreticalSpectrumGeneratorTrainer.dir/build.make src/utils/CMakeFiles/SvmTheoreticalSpectrumGeneratorTrainer.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/SvmTheoreticalSpectrumGeneratorTrainer.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/SvmTheoreticalSpectrumGeneratorTrainer.dir/build.make src/utils/CMakeFiles/SvmTheoreticalSpectrumGeneratorTrainer.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/SvmTheoreticalSpectrumGeneratorTrainer.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target SvmTheoreticalSpectrumGeneratorTrainer make -f src/utils/CMakeFiles/TICCalculator.dir/build.make src/utils/CMakeFiles/TICCalculator.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/TICCalculator.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/TICCalculator.dir/build.make src/utils/CMakeFiles/TICCalculator.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/TICCalculator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target TICCalculator make -f src/utils/CMakeFiles/TransformationEvaluation.dir/build.make src/utils/CMakeFiles/TransformationEvaluation.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/TransformationEvaluation.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/TransformationEvaluation.dir/build.make src/utils/CMakeFiles/TransformationEvaluation.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/TransformationEvaluation.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target TransformationEvaluation make -f src/utils/CMakeFiles/XMLValidator.dir/build.make src/utils/CMakeFiles/XMLValidator.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/XMLValidator.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/XMLValidator.dir/build.make src/utils/CMakeFiles/XMLValidator.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/XMLValidator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target XMLValidator make -f src/utils/CMakeFiles/TargetedFileConverter.dir/build.make src/utils/CMakeFiles/TargetedFileConverter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/TargetedFileConverter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/TargetedFileConverter.dir/build.make src/utils/CMakeFiles/TargetedFileConverter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/TargetedFileConverter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target TargetedFileConverter make -f src/utils/CMakeFiles/OpenSwathDIAPreScoring.dir/build.make src/utils/CMakeFiles/OpenSwathDIAPreScoring.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/OpenSwathDIAPreScoring.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/OpenSwathDIAPreScoring.dir/build.make src/utils/CMakeFiles/OpenSwathDIAPreScoring.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/OpenSwathDIAPreScoring.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target OpenSwathDIAPreScoring make -f src/utils/CMakeFiles/OpenSwathMzMLFileCacher.dir/build.make src/utils/CMakeFiles/OpenSwathMzMLFileCacher.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/OpenSwathMzMLFileCacher.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/OpenSwathMzMLFileCacher.dir/build.make src/utils/CMakeFiles/OpenSwathMzMLFileCacher.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/OpenSwathMzMLFileCacher.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target OpenSwathMzMLFileCacher make -f src/utils/CMakeFiles/OpenSwathWorkflow.dir/build.make src/utils/CMakeFiles/OpenSwathWorkflow.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/OpenSwathWorkflow.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/OpenSwathWorkflow.dir/build.make src/utils/CMakeFiles/OpenSwathWorkflow.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/OpenSwathWorkflow.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target OpenSwathWorkflow make -f src/utils/CMakeFiles/OpenSwathFileSplitter.dir/build.make src/utils/CMakeFiles/OpenSwathFileSplitter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/OpenSwathFileSplitter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/OpenSwathFileSplitter.dir/build.make src/utils/CMakeFiles/OpenSwathFileSplitter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/OpenSwathFileSplitter.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target OpenSwathFileSplitter make -f src/utils/CMakeFiles/OpenSwathRewriteToFeatureXML.dir/build.make src/utils/CMakeFiles/OpenSwathRewriteToFeatureXML.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/OpenSwathRewriteToFeatureXML.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/OpenSwathRewriteToFeatureXML.dir/build.make src/utils/CMakeFiles/OpenSwathRewriteToFeatureXML.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/OpenSwathRewriteToFeatureXML.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target OpenSwathRewriteToFeatureXML make -f src/utils/CMakeFiles/MRMTransitionGroupPicker.dir/build.make src/utils/CMakeFiles/MRMTransitionGroupPicker.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/MRMTransitionGroupPicker.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/MRMTransitionGroupPicker.dir/build.make src/utils/CMakeFiles/MRMTransitionGroupPicker.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/MRMTransitionGroupPicker.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 93%] Built target MRMTransitionGroupPicker make -f src/utils/CMakeFiles/ImageCreator.dir/build.make src/utils/CMakeFiles/ImageCreator.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/ImageCreator.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/ImageCreator.dir/build.make src/utils/CMakeFiles/ImageCreator.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/ImageCreator.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Built target ImageCreator make -f src/utils/CMakeFiles/INIUpdater.dir/build.make src/utils/CMakeFiles/INIUpdater.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/INIUpdater.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/INIUpdater.dir/build.make src/utils/CMakeFiles/INIUpdater.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/INIUpdater.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Built target INIUpdater make -f src/utils/CMakeFiles/UTILS.dir/build.make src/utils/CMakeFiles/UTILS.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/utils/CMakeFiles/UTILS.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/UTILS.dir/build.make src/utils/CMakeFiles/UTILS.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/utils/CMakeFiles/UTILS.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Built target UTILS make -f src/topp/CMakeFiles/TOPP.dir/build.make src/topp/CMakeFiles/TOPP.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/topp/CMakeFiles/TOPP.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f src/topp/CMakeFiles/TOPP.dir/build.make src/topp/CMakeFiles/TOPP.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'src/topp/CMakeFiles/TOPP.dir/build'. make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Built target TOPP make -f doc/CMakeFiles/doc_minimal.dir/build.make doc/CMakeFiles/doc_minimal.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/CMakeFiles/doc_minimal.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f doc/CMakeFiles/doc_minimal.dir/build.make doc/CMakeFiles/doc_minimal.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Build the doxygen documentation cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "" cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "Creating html documentation without class/TOPP/UTILS documentation" Creating html documentation without class/TOPP/UTILS documentation cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "" cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E remove_directory html cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E chdir /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc /usr/bin/doxygen doxygen/Doxyfile_noclass warning: Tag 'OUTPUT_TEXT_DIRECTION' at line 115 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'TCL_SUBST' at line 284 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 1147 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 1283 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1575 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1877 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 1893 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'RTF_SOURCE_CODE' at line 1967 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 2072 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 2260 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 2302 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 2309 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 2533 of file 'doxygen/Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! Doxygen version used: 1.9.8 Searching for include files... Searching for example files... 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/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/MASSDECOMPOSITION Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/DATASTRUCTURES/Utils Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/QC Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/TRANSFORMERS Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/SMOOTHING Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/BASELINE Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/CALIBRATION Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/NOISEESTIMATION Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/ID Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/FILTERING/DATAREDUCTION Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/CLUSTERING Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/COMPARISON/SPECTRA Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include/OpenMS Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include/OpenMS/TRANSFORMATIONS Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/superhirn/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/APPLICATIONS Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/APPLICATIONS/MISC Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/DIALOGS Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/ANNOTATION Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/VISUALIZER Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include/OpenMS/VISUAL/MISC Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/INIFileEditor-resources Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPView-resources Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPAS-resources Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/SwathWizard-resources Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/MISC Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/topp Searching for files in directory /build/reproducible-path/openms-2.6.0+cleaned1/src/utils Reading and parsing tag files Parsing files Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/OpenMS_tutorial/OpenMS_Tutorial.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/OpenMS_tutorial/OpenMS_Tutorial.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/TOPP_tutorial/TOPP_advanced.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/TOPP_tutorial/TOPP_advanced.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/TOPP_tutorial/TOPP_concepts.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/TOPP_tutorial/TOPP_concepts.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/TOPP_tutorial/TOPP_scripting.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/TOPP_tutorial/TOPP_scripting.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/TOPP_tutorial/TOPPAS.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/TOPP_tutorial/TOPPAS.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/TOPP_tutorial/TOPPView_calling_topp.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/TOPP_tutorial/TOPPView_calling_topp.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/TOPP_tutorial/TOPPView_interface.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/TOPP_tutorial/TOPPView_interface.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/Changelog.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/Changelog.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/ExternalCode.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/ExternalCode.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/FAQ.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/FAQ.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/KnownDevBugs.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/KnownDevBugs.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/Main.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/Main.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/Modules.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/Modules.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/OpenMS_Tutorial_html.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/OpenMS_Tutorial_html.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/PyOpenMS.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/PyOpenMS.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/QuickStart.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/QuickStart.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/TOPP.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/TOPP.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/TOPP_Tutorial_html.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/TOPP_Tutorial_html.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/TOPPAS.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/TOPPAS.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/UTILS.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/public/UTILS.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/common-cmake-parameters.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/common-cmake-parameters.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/install-linux-bin.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/install-linux-bin.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/install-linux.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/install-linux.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/install-macs-bin.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/install-macs-bin.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/install-macs.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/install-macs.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/install-win-bin.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/install-win-bin.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/install-win.doxygen... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/doc/doxygen/install/install-win.doxygen... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/INIFileEditor.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/INIFileEditor.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/SwathWizard.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/SwathWizard.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPAS.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPAS.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPView.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/GUITOOLS/TOPPView.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/INIFileEditorWindow.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/INIFileEditorWindow.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/MISC/QApplicationTOPP.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/MISC/QApplicationTOPP.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/SwathWizardBase.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/SwathWizardBase.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPASBase.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPASBase.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/source/VISUAL/APPLICATIONS/TOPPViewBase.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/BaselineFilter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/BaselineFilter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/CometAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/CometAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/CompNovo.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/CompNovo.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/CompNovoCID.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/CompNovoCID.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ConsensusID.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ConsensusID.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ConsensusMapNormalizer.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ConsensusMapNormalizer.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/CruxAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/CruxAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/DatabaseSuitability.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/DatabaseSuitability.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/Decharger.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/Decharger.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/DTAExtractor.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/DTAExtractor.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/EICExtractor.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/EICExtractor.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ExecutePipeline.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ExecutePipeline.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ExternalCalibration.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ExternalCalibration.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FalseDiscoveryRate.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FalseDiscoveryRate.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderCentroided.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderCentroided.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderIdentification.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderIdentification.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderIsotopeWavelet.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderIsotopeWavelet.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderMetabo.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderMetabo.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderMRM.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderMRM.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderMultiplex.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureFinderMultiplex.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureLinkerBase.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureLinkerBase.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureLinkerLabeled.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureLinkerLabeled.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureLinkerUnlabeled.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureLinkerUnlabeled.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureLinkerUnlabeledKD.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureLinkerUnlabeledKD.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureLinkerUnlabeledQT.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FeatureLinkerUnlabeledQT.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FidoAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FidoAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FileConverter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FileConverter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FileFilter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FileFilter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FileInfo.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FileInfo.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FileMerger.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/FileMerger.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/GenericWrapper.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/GenericWrapper.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/GNPSExport.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/GNPSExport.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/HighResPrecursorMassCorrector.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/HighResPrecursorMassCorrector.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDConflictResolver.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDConflictResolver.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDFileConverter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDFileConverter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDFilter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDFilter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDMapper.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDMapper.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDMerger.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDMerger.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDPosteriorErrorProbability.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDPosteriorErrorProbability.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDRipper.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDRipper.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDRTCalibration.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IDRTCalibration.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/InclusionExclusionListCreator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/InclusionExclusionListCreator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/InspectAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/InspectAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/InternalCalibration.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/InternalCalibration.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IsobaricAnalyzer.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/IsobaricAnalyzer.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/LuciphorAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/LuciphorAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapAlignerIdentification.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapAlignerIdentification.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapAlignerPoseClustering.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapAlignerPoseClustering.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapAlignerSpectrum.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapAlignerSpectrum.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapAlignerTreeGuided.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapAlignerTreeGuided.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapNormalizer.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapNormalizer.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapRTTransformer.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapRTTransformer.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapStatistics.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MapStatistics.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MaRaClusterAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MaRaClusterAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MascotAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MascotAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MascotAdapterOnline.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MascotAdapterOnline.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MassTraceExtractor.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MassTraceExtractor.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MRMMapper.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MRMMapper.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MSGFPlusAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MSGFPlusAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MyriMatchAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MyriMatchAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MzTabExporter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/MzTabExporter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/NoiseFilterGaussian.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/NoiseFilterGaussian.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/NoiseFilterSGolay.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/NoiseFilterSGolay.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OMSSAAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OMSSAAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenPepXL.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenPepXL.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenPepXLLF.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenPepXLLF.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathAnalyzer.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathAnalyzer.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathAssayGenerator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathAssayGenerator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathChromatogramExtractor.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathChromatogramExtractor.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathConfidenceScoring.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathConfidenceScoring.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathDecoyGenerator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathDecoyGenerator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathFeatureXMLToTSV.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathFeatureXMLToTSV.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathRTNormalizer.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/OpenSwathRTNormalizer.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PeakPickerHiRes.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PeakPickerHiRes.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PeakPickerWavelet.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PeakPickerWavelet.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PepNovoAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PepNovoAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PeptideIndexer.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PeptideIndexer.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PercolatorAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PercolatorAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PhosphoScoring.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PhosphoScoring.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PrecursorIonSelector.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PrecursorIonSelector.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PrecursorMassCorrector.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PrecursorMassCorrector.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ProteinInference.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ProteinInference.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ProteinQuantifier.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ProteinQuantifier.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ProteinResolver.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/ProteinResolver.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PTModel.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PTModel.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PTPredict.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/PTPredict.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/QualityControl.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/QualityControl.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/Resampler.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/Resampler.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/RTModel.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/RTModel.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/RTPredict.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/RTPredict.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SeedListGenerator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SeedListGenerator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpecLibSearcher.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpecLibSearcher.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterBernNorm.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterBernNorm.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterMarkerMower.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterMarkerMower.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterNLargest.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterNLargest.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterNormalizer.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterNormalizer.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterParentPeakMower.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterParentPeakMower.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterScaler.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterScaler.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterSqrtMower.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterSqrtMower.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterThresholdMower.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterThresholdMower.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterWindowMower.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraFilterWindowMower.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraMerger.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/SpectraMerger.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/TextExporter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/TextExporter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/TOFCalibration.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/TOFCalibration.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/XFDR.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/XFDR.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/XTandemAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/topp/XTandemAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/AccurateMassSearch.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/AccurateMassSearch.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/AssayGeneratorMetabo.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/AssayGeneratorMetabo.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ClusterMassTraces.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ClusterMassTraces.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ClusterMassTracesByPrecursor.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ClusterMassTracesByPrecursor.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/CVInspector.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/CVInspector.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/DatabaseFilter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/DatabaseFilter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/DecoyDatabase.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/DecoyDatabase.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/DeMeanderize.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/DeMeanderize.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/Digestor.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/Digestor.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/DigestorMotif.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/DigestorMotif.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/Epifany.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/Epifany.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ERPairFinder.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ERPairFinder.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/FeatureFinderMetaboIdent.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/FeatureFinderMetaboIdent.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/FeatureFinderSuperHirn.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/FeatureFinderSuperHirn.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/FFEval.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/FFEval.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/FuzzyDiff.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/FuzzyDiff.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDDecoyProbability.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDDecoyProbability.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDExtractor.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDExtractor.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDMassAccuracy.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDMassAccuracy.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDScoreSwitcher.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDScoreSwitcher.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDSplitter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/IDSplitter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ImageCreator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ImageCreator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/INIUpdater.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/INIUpdater.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/LabeledEval.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/LabeledEval.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MassCalculator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MassCalculator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MetaboliteAdductDecharger.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MetaboliteAdductDecharger.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MetaboliteSpectralMatcher.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MetaboliteSpectralMatcher.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MetaProSIP.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MetaProSIP.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MRMPairFinder.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MRMPairFinder.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MRMTransitionGroupPicker.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MRMTransitionGroupPicker.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MSFraggerAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MSFraggerAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MSSimulator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MSSimulator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MSstatsConverter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MSstatsConverter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MultiplexResolver.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MultiplexResolver.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MzMLSplitter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/MzMLSplitter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/NovorAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/NovorAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/NucleicAcidSearchEngine.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/NucleicAcidSearchEngine.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenMSInfo.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenMSInfo.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathDIAPreScoring.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathDIAPreScoring.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathFileSplitter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathFileSplitter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathMzMLFileCacher.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathMzMLFileCacher.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathRewriteToFeatureXML.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathRewriteToFeatureXML.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathWorkflow.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/OpenSwathWorkflow.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/PeakPickerIterative.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/PeakPickerIterative.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ProteomicsLFQ.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/ProteomicsLFQ.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/PSMFeatureExtractor.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/PSMFeatureExtractor.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCCalculator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCCalculator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCEmbedder.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCEmbedder.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCExporter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCExporter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCExtractor.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCExtractor.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCImporter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCImporter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCMerger.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCMerger.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCShrinker.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/QCShrinker.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RNADigestor.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RNADigestor.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RNAMassCalculator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RNAMassCalculator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RNPxlSearch.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RNPxlSearch.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RNPxlXICFilter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RNPxlXICFilter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RTEvaluation.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/RTEvaluation.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SemanticValidator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SemanticValidator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SequenceCoverageCalculator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SequenceCoverageCalculator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SimpleSearchEngine.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SimpleSearchEngine.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SiriusAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SiriusAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SpecLibCreator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SpecLibCreator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SpectraSTSearchAdapter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SpectraSTSearchAdapter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/StaticModification.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/StaticModification.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SvmTheoreticalSpectrumGeneratorTrainer.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/SvmTheoreticalSpectrumGeneratorTrainer.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/TargetedFileConverter.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/TargetedFileConverter.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/TICCalculator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/TICCalculator.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/TransformationEvaluation.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/TransformationEvaluation.cpp... Preprocessing /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/XMLValidator.cpp... Parsing file /build/reproducible-path/openms-2.6.0+cleaned1/src/utils/XMLValidator.cpp... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Searching for tag less structs... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating images for formulas in HTML... Generating image form_0.png for formula Generating image form_1.png for formula Generating image form_2.png for formula Generating image form_3.png for formula Generating image form_4.png for formula Generating image form_5.png for formula Generating image form_6.png for formula Generating image form_7.png for formula Generating image form_8.png for formula Generating image form_9.png for formula Generating image form_0_dark.png for formula Generating image form_1_dark.png for formula Generating image form_2_dark.png for formula Generating image form_3_dark.png for formula Generating image form_4_dark.png for formula Generating image form_5_dark.png for formula Generating image form_6_dark.png for formula Generating image form_7_dark.png for formula Generating image form_8_dark.png for formula Generating image form_9_dark.png for formula Generating example documentation... Generating file sources... Parsing code for file common-cmake-parameters.doxygen... Parsing code for file install-linux-bin.doxygen... Parsing code for file install-linux.doxygen... Parsing code for file install-macs-bin.doxygen... Parsing code for file install-macs.doxygen... Parsing code for file install-win-bin.doxygen... Parsing code for file install-win.doxygen... Parsing code for file Changelog.doxygen... Parsing code for file ExternalCode.doxygen... Parsing code for file FAQ.doxygen... Parsing code for file KnownDevBugs.doxygen... Parsing code for file Main.doxygen... Parsing code for file Modules.doxygen... Parsing code for file OpenMS_Tutorial_html.doxygen... Parsing code for file PyOpenMS.doxygen... Parsing code for file QuickStart.doxygen... Parsing code for file TOPP.doxygen... Parsing code for file TOPP_Tutorial_html.doxygen... Parsing code for file UTILS.doxygen... Parsing code for file OpenMS_Tutorial.doxygen... Parsing code for file TOPP_advanced.doxygen... Parsing code for file TOPP_concepts.doxygen... Parsing code for file TOPP_scripting.doxygen... Parsing code for file TOPPAS.doxygen... Parsing code for file TOPPAS.doxygen... Parsing code for file TOPPView_calling_topp.doxygen... Parsing code for file TOPPView_interface.doxygen... Parsing code for file INIFileEditor.cpp... Parsing code for file SwathWizard.cpp... Parsing code for file TOPPAS.cpp... Parsing code for file TOPPView.cpp... Parsing code for file INIFileEditorWindow.cpp... Parsing code for file QApplicationTOPP.cpp... Parsing code for file SwathWizardBase.cpp... Parsing code for file TOPPASBase.cpp... Parsing code for file TOPPViewBase.cpp... Parsing code for file BaselineFilter.cpp... Parsing code for file CometAdapter.cpp... Parsing code for file CompNovo.cpp... Parsing code for file CompNovoCID.cpp... Parsing code for file ConsensusID.cpp... Parsing code for file ConsensusMapNormalizer.cpp... Parsing code for file CruxAdapter.cpp... Parsing code for file DatabaseSuitability.cpp... Parsing code for file Decharger.cpp... Parsing code for file DTAExtractor.cpp... Parsing code for file EICExtractor.cpp... Parsing code for file ExecutePipeline.cpp... Parsing code for file ExternalCalibration.cpp... Parsing code for file FalseDiscoveryRate.cpp... Parsing code for file FeatureFinderCentroided.cpp... Parsing code for file FeatureFinderIdentification.cpp... Parsing code for file FeatureFinderIsotopeWavelet.cpp... Parsing code for file FeatureFinderMetabo.cpp... Parsing code for file FeatureFinderMRM.cpp... Parsing code for file FeatureFinderMultiplex.cpp... Generating code for file FeatureLinkerBase.cpp... Parsing code for file FeatureLinkerLabeled.cpp... Parsing code for file FeatureLinkerUnlabeled.cpp... Parsing code for file FeatureLinkerUnlabeledKD.cpp... Parsing code for file FeatureLinkerUnlabeledQT.cpp... Parsing code for file FidoAdapter.cpp... Parsing code for file FileConverter.cpp... Parsing code for file FileFilter.cpp... Parsing code for file FileInfo.cpp... Parsing code for file FileMerger.cpp... Parsing code for file GenericWrapper.cpp... Parsing code for file GNPSExport.cpp... Parsing code for file HighResPrecursorMassCorrector.cpp... Parsing code for file IDConflictResolver.cpp... Parsing code for file IDFileConverter.cpp... Parsing code for file IDFilter.cpp... Parsing code for file IDMapper.cpp... Parsing code for file IDMerger.cpp... Parsing code for file IDPosteriorErrorProbability.cpp... Parsing code for file IDRipper.cpp... Parsing code for file IDRTCalibration.cpp... Parsing code for file InclusionExclusionListCreator.cpp... Parsing code for file InspectAdapter.cpp... Parsing code for file InternalCalibration.cpp... Parsing code for file IsobaricAnalyzer.cpp... Parsing code for file LuciphorAdapter.cpp... Parsing code for file MapAlignerIdentification.cpp... Parsing code for file MapAlignerPoseClustering.cpp... Parsing code for file MapAlignerSpectrum.cpp... Parsing code for file MapAlignerTreeGuided.cpp... Parsing code for file MapNormalizer.cpp... Parsing code for file MapRTTransformer.cpp... Parsing code for file MapStatistics.cpp... Parsing code for file MaRaClusterAdapter.cpp... Parsing code for file MascotAdapter.cpp... Parsing code for file MascotAdapterOnline.cpp... Parsing code for file MassTraceExtractor.cpp... Parsing code for file MRMMapper.cpp... Parsing code for file MSGFPlusAdapter.cpp... Parsing code for file MyriMatchAdapter.cpp... Parsing code for file MzTabExporter.cpp... Parsing code for file NoiseFilterGaussian.cpp... Parsing code for file NoiseFilterSGolay.cpp... Parsing code for file OMSSAAdapter.cpp... Parsing code for file OpenPepXL.cpp... Parsing code for file OpenPepXLLF.cpp... Parsing code for file OpenSwathAnalyzer.cpp... Parsing code for file OpenSwathAssayGenerator.cpp... Parsing code for file OpenSwathChromatogramExtractor.cpp... Parsing code for file OpenSwathConfidenceScoring.cpp... Parsing code for file OpenSwathDecoyGenerator.cpp... Parsing code for file OpenSwathFeatureXMLToTSV.cpp... Parsing code for file OpenSwathRTNormalizer.cpp... Parsing code for file PeakPickerHiRes.cpp... Parsing code for file PeakPickerWavelet.cpp... Parsing code for file PepNovoAdapter.cpp... Parsing code for file PeptideIndexer.cpp... Parsing code for file PercolatorAdapter.cpp... Parsing code for file PhosphoScoring.cpp... Parsing code for file PrecursorIonSelector.cpp... Parsing code for file PrecursorMassCorrector.cpp... Parsing code for file ProteinInference.cpp... Parsing code for file ProteinQuantifier.cpp... Parsing code for file ProteinResolver.cpp... Parsing code for file PTModel.cpp... Parsing code for file PTPredict.cpp... Parsing code for file QualityControl.cpp... Parsing code for file Resampler.cpp... Parsing code for file RTModel.cpp... Parsing code for file RTPredict.cpp... Parsing code for file SeedListGenerator.cpp... Parsing code for file SpecLibSearcher.cpp... Parsing code for file SpectraFilterBernNorm.cpp... Parsing code for file SpectraFilterMarkerMower.cpp... Parsing code for file SpectraFilterNLargest.cpp... Parsing code for file SpectraFilterNormalizer.cpp... Parsing code for file SpectraFilterParentPeakMower.cpp... Parsing code for file SpectraFilterScaler.cpp... Parsing code for file SpectraFilterSqrtMower.cpp... Parsing code for file SpectraFilterThresholdMower.cpp... Parsing code for file SpectraFilterWindowMower.cpp... Parsing code for file SpectraMerger.cpp... Parsing code for file TextExporter.cpp... Parsing code for file TOFCalibration.cpp... Parsing code for file XFDR.cpp... Parsing code for file XTandemAdapter.cpp... Parsing code for file AccurateMassSearch.cpp... Parsing code for file AssayGeneratorMetabo.cpp... Parsing code for file ClusterMassTraces.cpp... Parsing code for file ClusterMassTracesByPrecursor.cpp... Parsing code for file CVInspector.cpp... Parsing code for file DatabaseFilter.cpp... Parsing code for file DecoyDatabase.cpp... Parsing code for file DeMeanderize.cpp... Parsing code for file Digestor.cpp... Parsing code for file DigestorMotif.cpp... Parsing code for file Epifany.cpp... Parsing code for file ERPairFinder.cpp... Parsing code for file FeatureFinderMetaboIdent.cpp... Parsing code for file FeatureFinderSuperHirn.cpp... Parsing code for file FFEval.cpp... Parsing code for file FuzzyDiff.cpp... Parsing code for file IDDecoyProbability.cpp... Parsing code for file IDExtractor.cpp... Parsing code for file IDMassAccuracy.cpp... Parsing code for file IDScoreSwitcher.cpp... Parsing code for file IDSplitter.cpp... Parsing code for file ImageCreator.cpp... Parsing code for file INIUpdater.cpp... Parsing code for file LabeledEval.cpp... Parsing code for file MassCalculator.cpp... Parsing code for file MetaboliteAdductDecharger.cpp... Parsing code for file MetaboliteSpectralMatcher.cpp... Parsing code for file MetaProSIP.cpp... Parsing code for file MRMPairFinder.cpp... Parsing code for file MRMTransitionGroupPicker.cpp... Parsing code for file MSFraggerAdapter.cpp... Parsing code for file MSSimulator.cpp... Parsing code for file MSstatsConverter.cpp... Parsing code for file MultiplexResolver.cpp... Parsing code for file MzMLSplitter.cpp... Parsing code for file NovorAdapter.cpp... Parsing code for file NucleicAcidSearchEngine.cpp... Parsing code for file OpenMSInfo.cpp... Parsing code for file OpenSwathDIAPreScoring.cpp... Parsing code for file OpenSwathFileSplitter.cpp... Parsing code for file OpenSwathMzMLFileCacher.cpp... Parsing code for file OpenSwathRewriteToFeatureXML.cpp... Parsing code for file OpenSwathWorkflow.cpp... Parsing code for file PeakPickerIterative.cpp... Parsing code for file ProteomicsLFQ.cpp... Parsing code for file PSMFeatureExtractor.cpp... Parsing code for file QCCalculator.cpp... Parsing code for file QCEmbedder.cpp... Parsing code for file QCExporter.cpp... Parsing code for file QCExtractor.cpp... Parsing code for file QCImporter.cpp... Parsing code for file QCMerger.cpp... Parsing code for file QCShrinker.cpp... Parsing code for file RNADigestor.cpp... Parsing code for file RNAMassCalculator.cpp... Parsing code for file RNPxlSearch.cpp... Parsing code for file RNPxlXICFilter.cpp... Parsing code for file RTEvaluation.cpp... Parsing code for file SemanticValidator.cpp... Parsing code for file SequenceCoverageCalculator.cpp... Parsing code for file SimpleSearchEngine.cpp... Parsing code for file SiriusAdapter.cpp... Parsing code for file SpecLibCreator.cpp... Parsing code for file SpectraSTSearchAdapter.cpp... Parsing code for file StaticModification.cpp... Parsing code for file SvmTheoreticalSpectrumGeneratorTrainer.cpp... Parsing code for file TargetedFileConverter.cpp... Parsing code for file TICCalculator.cpp... Parsing code for file TransformationEvaluation.cpp... Parsing code for file XMLValidator.cpp... Generating file documentation... Generating docs for file common-cmake-parameters.doxygen... Generating docs for file install-linux-bin.doxygen... Generating docs for file install-linux.doxygen... Generating docs for file install-macs-bin.doxygen... Generating docs for file install-macs.doxygen... Generating docs for file install-win-bin.doxygen... Generating docs for file install-win.doxygen... Generating docs for file Changelog.doxygen... Generating docs for file ExternalCode.doxygen... Generating docs for file FAQ.doxygen... Generating docs for file KnownDevBugs.doxygen... Generating docs for file Main.doxygen... Generating docs for file Modules.doxygen... Generating docs for file OpenMS_Tutorial_html.doxygen... Generating docs for file PyOpenMS.doxygen... Generating docs for file QuickStart.doxygen... Generating docs for file TOPP.doxygen... Generating docs for file TOPP_Tutorial_html.doxygen... Generating docs for file UTILS.doxygen... Generating docs for file OpenMS_Tutorial.doxygen... Generating docs for file TOPP_advanced.doxygen... Generating docs for file TOPP_concepts.doxygen... Generating docs for file TOPP_scripting.doxygen... Generating docs for file TOPPAS.doxygen... Generating docs for file TOPPAS.doxygen... Generating docs for file TOPPView_calling_topp.doxygen... Generating docs for file TOPPView_interface.doxygen... Generating docs for file INIFileEditor.cpp... Generating docs for file SwathWizard.cpp... Generating docs for file TOPPAS.cpp... Generating docs for file TOPPView.cpp... Generating docs for file INIFileEditorWindow.cpp... Generating docs for file QApplicationTOPP.cpp... Generating docs for file SwathWizardBase.cpp... Generating docs for file TOPPASBase.cpp... Generating docs for file TOPPViewBase.cpp... Generating docs for file BaselineFilter.cpp... Generating docs for file CometAdapter.cpp... Generating docs for file CompNovo.cpp... Generating docs for file CompNovoCID.cpp... Generating docs for file ConsensusID.cpp... Generating docs for file ConsensusMapNormalizer.cpp... Generating docs for file CruxAdapter.cpp... Generating docs for file DatabaseSuitability.cpp... Generating docs for file Decharger.cpp... Generating docs for file DTAExtractor.cpp... Generating docs for file EICExtractor.cpp... Generating docs for file ExecutePipeline.cpp... Generating docs for file ExternalCalibration.cpp... Generating docs for file FalseDiscoveryRate.cpp... Generating docs for file FeatureFinderCentroided.cpp... Generating docs for file FeatureFinderIdentification.cpp... Generating docs for file FeatureFinderIsotopeWavelet.cpp... Generating docs for file FeatureFinderMetabo.cpp... Generating docs for file FeatureFinderMRM.cpp... Generating docs for file FeatureFinderMultiplex.cpp... Generating docs for file FeatureLinkerBase.cpp... Generating docs for file FeatureLinkerLabeled.cpp... Generating docs for file FeatureLinkerUnlabeled.cpp... Generating docs for file FeatureLinkerUnlabeledKD.cpp... Generating docs for file FeatureLinkerUnlabeledQT.cpp... Generating docs for file FidoAdapter.cpp... Generating docs for file FileConverter.cpp... Generating docs for file FileFilter.cpp... Generating docs for file FileInfo.cpp... Generating docs for file FileMerger.cpp... Generating docs for file GenericWrapper.cpp... Generating docs for file GNPSExport.cpp... Generating docs for file HighResPrecursorMassCorrector.cpp... Generating docs for file IDConflictResolver.cpp... Generating docs for file IDFileConverter.cpp... Generating docs for file IDFilter.cpp... Generating docs for file IDMapper.cpp... Generating docs for file IDMerger.cpp... Generating docs for file IDPosteriorErrorProbability.cpp... Generating docs for file IDRipper.cpp... Generating docs for file IDRTCalibration.cpp... Generating docs for file InclusionExclusionListCreator.cpp... Generating docs for file InspectAdapter.cpp... Generating docs for file InternalCalibration.cpp... Generating docs for file IsobaricAnalyzer.cpp... Generating docs for file LuciphorAdapter.cpp... Generating docs for file MapAlignerIdentification.cpp... Generating docs for file MapAlignerPoseClustering.cpp... Generating docs for file MapAlignerSpectrum.cpp... Generating docs for file MapAlignerTreeGuided.cpp... Generating docs for file MapNormalizer.cpp... Generating docs for file MapRTTransformer.cpp... Generating docs for file MapStatistics.cpp... Generating docs for file MaRaClusterAdapter.cpp... Generating docs for file MascotAdapter.cpp... Generating docs for file MascotAdapterOnline.cpp... Generating docs for file MassTraceExtractor.cpp... Generating docs for file MRMMapper.cpp... Generating docs for file MSGFPlusAdapter.cpp... Generating docs for file MyriMatchAdapter.cpp... Generating docs for file MzTabExporter.cpp... Generating docs for file NoiseFilterGaussian.cpp... Generating docs for file NoiseFilterSGolay.cpp... Generating docs for file OMSSAAdapter.cpp... Generating docs for file OpenPepXL.cpp... Generating docs for file OpenPepXLLF.cpp... Generating docs for file OpenSwathAnalyzer.cpp... Generating docs for file OpenSwathAssayGenerator.cpp... Generating docs for file OpenSwathChromatogramExtractor.cpp... Generating docs for file OpenSwathConfidenceScoring.cpp... Generating docs for file OpenSwathDecoyGenerator.cpp... Generating docs for file OpenSwathFeatureXMLToTSV.cpp... Generating docs for file OpenSwathRTNormalizer.cpp... Generating docs for file PeakPickerHiRes.cpp... Generating docs for file PeakPickerWavelet.cpp... Generating docs for file PepNovoAdapter.cpp... Generating docs for file PeptideIndexer.cpp... Generating docs for file PercolatorAdapter.cpp... Generating docs for file PhosphoScoring.cpp... Generating docs for file PrecursorIonSelector.cpp... Generating docs for file PrecursorMassCorrector.cpp... Generating docs for file ProteinInference.cpp... Generating docs for file ProteinQuantifier.cpp... Generating docs for file ProteinResolver.cpp... Generating docs for file PTModel.cpp... Generating docs for file PTPredict.cpp... Generating docs for file QualityControl.cpp... Generating docs for file Resampler.cpp... Generating docs for file RTModel.cpp... Generating docs for file RTPredict.cpp... Generating docs for file SeedListGenerator.cpp... Generating docs for file SpecLibSearcher.cpp... Generating docs for file SpectraFilterBernNorm.cpp... Generating docs for file SpectraFilterMarkerMower.cpp... Generating docs for file SpectraFilterNLargest.cpp... Generating docs for file SpectraFilterNormalizer.cpp... Generating docs for file SpectraFilterParentPeakMower.cpp... Generating docs for file SpectraFilterScaler.cpp... Generating docs for file SpectraFilterSqrtMower.cpp... Generating docs for file SpectraFilterThresholdMower.cpp... Generating docs for file SpectraFilterWindowMower.cpp... Generating docs for file SpectraMerger.cpp... Generating docs for file TextExporter.cpp... Generating docs for file TOFCalibration.cpp... Generating docs for file XFDR.cpp... Generating docs for file XTandemAdapter.cpp... Generating docs for file AccurateMassSearch.cpp... Generating docs for file AssayGeneratorMetabo.cpp... Generating docs for file ClusterMassTraces.cpp... Generating docs for file ClusterMassTracesByPrecursor.cpp... Generating docs for file CVInspector.cpp... Generating docs for file DatabaseFilter.cpp... Generating docs for file DecoyDatabase.cpp... Generating docs for file DeMeanderize.cpp... Generating docs for file Digestor.cpp... Generating docs for file DigestorMotif.cpp... Generating docs for file Epifany.cpp... Generating docs for file ERPairFinder.cpp... Generating docs for file FeatureFinderMetaboIdent.cpp... Generating docs for file FeatureFinderSuperHirn.cpp... Generating docs for file FFEval.cpp... Generating docs for file FuzzyDiff.cpp... Generating docs for file IDDecoyProbability.cpp... Generating docs for file IDExtractor.cpp... Generating docs for file IDMassAccuracy.cpp... Generating docs for file IDScoreSwitcher.cpp... Generating docs for file IDSplitter.cpp... Generating docs for file ImageCreator.cpp... Generating docs for file INIUpdater.cpp... Generating docs for file LabeledEval.cpp... Generating docs for file MassCalculator.cpp... Generating docs for file MetaboliteAdductDecharger.cpp... Generating docs for file MetaboliteSpectralMatcher.cpp... Generating docs for file MetaProSIP.cpp... Generating docs for file MRMPairFinder.cpp... Generating docs for file MRMTransitionGroupPicker.cpp... Generating docs for file MSFraggerAdapter.cpp... Generating docs for file MSSimulator.cpp... Generating docs for file MSstatsConverter.cpp... Generating docs for file MultiplexResolver.cpp... Generating docs for file MzMLSplitter.cpp... Generating docs for file NovorAdapter.cpp... Generating docs for file NucleicAcidSearchEngine.cpp... Generating docs for file OpenMSInfo.cpp... Generating docs for file OpenSwathDIAPreScoring.cpp... Generating docs for file OpenSwathFileSplitter.cpp... Generating docs for file OpenSwathMzMLFileCacher.cpp... Generating docs for file OpenSwathRewriteToFeatureXML.cpp... Generating docs for file OpenSwathWorkflow.cpp... Generating docs for file PeakPickerIterative.cpp... Generating docs for file ProteomicsLFQ.cpp... Generating docs for file PSMFeatureExtractor.cpp... Generating docs for file QCCalculator.cpp... Generating docs for file QCEmbedder.cpp... Generating docs for file QCExporter.cpp... Generating docs for file QCExtractor.cpp... Generating docs for file QCImporter.cpp... Generating docs for file QCMerger.cpp... Generating docs for file QCShrinker.cpp... Generating docs for file RNADigestor.cpp... Generating docs for file RNAMassCalculator.cpp... Generating docs for file RNPxlSearch.cpp... Generating docs for file RNPxlXICFilter.cpp... Generating docs for file RTEvaluation.cpp... Generating docs for file SemanticValidator.cpp... Generating docs for file SequenceCoverageCalculator.cpp... Generating docs for file SimpleSearchEngine.cpp... Generating docs for file SiriusAdapter.cpp... Generating docs for file SpecLibCreator.cpp... Generating docs for file SpectraSTSearchAdapter.cpp... Generating docs for file StaticModification.cpp... Generating docs for file SvmTheoreticalSpectrumGeneratorTrainer.cpp... Generating docs for file TargetedFileConverter.cpp... Generating docs for file TICCalculator.cpp... Generating docs for file TransformationEvaluation.cpp... Generating docs for file XMLValidator.cpp... Generating page documentation... Generating docs for page tutorial... Generating docs for page TOPP_advanced... Generating docs for page TOPP_concepts... Generating docs for page TOPP_example_qualitycontrol... Generating docs for page TOPP_general... Generating docs for page TOPP_example_handling... Generating docs for page TOPP_example_signalprocessing... Generating docs for page TOPP_example_id... Generating docs for page TOPP_example_mapalignment... 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Generating docs for page known_dev_bugs... Generating docs for page OpenMS_tutorial... Generating docs for page pyOpenMS... Generating docs for page Quickstart... Generating docs for page TOPP_documentation... Generating docs for page TOPP_tutorial... Generating docs for page TOPPAS_tutorial... Generating docs for page UTILS_documentation... Generating docs for page install_linux_bin... Generating docs for page install_linux... Generating docs for page install_mac_bin... Generating docs for page install_mac... Generating docs for page install_win_bin... Generating docs for page install_win... Generating docs for page TOPP_INIFileEditor... Generating docs for page TOPP_SwathWizard... Generating docs for page TOPP_TOPPAS... Generating docs for page TOPP_TOPPView... Generating docs for page TOPP_BaselineFilter... Generating docs for page TOPP_CometAdapter... Generating docs for page TOPP_CompNovo... Generating docs for page TOPP_CompNovoCID... Generating docs for page TOPP_ConsensusID... Generating docs for page TOPP_ConsensusMapNormalizer... Generating docs for page TOPP_CruxAdapter... Generating docs for page TOPP_DatabaseSuitability... Generating docs for page TOPP_Decharger... Generating docs for page TOPP_DTAExtractor... Generating docs for page TOPP_EICExtractor... Generating docs for page TOPP_ExecutePipeline... Generating docs for page TOPP_ExternalCalibration... Generating docs for page TOPP_FalseDiscoveryRate... Generating docs for page TOPP_FeatureFinderCentroided... Generating docs for page TOPP_FeatureFinderIdentification... Generating docs for page TOPP_FeatureFinderIsotopeWavelet... Generating docs for page TOPP_FeatureFinderMetabo... Generating docs for page TOPP_FeatureFinderMRM... Generating docs for page TOPP_FeatureFinderMultiplex... Generating docs for page TOPP_FeatureLinkerBase... Generating docs for page TOPP_FeatureLinkerLabeled... Generating docs for page TOPP_FeatureLinkerUnlabeled... Generating docs for page TOPP_FeatureLinkerUnlabeledKD... 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Generating group documentation... Generating dependency graph for group Math Generating dependency graph for group MathFunctionsStatistics Generating dependency graph for group MathFunctionsMisc Generating dependency graph for group Format Generating dependency graph for group FileIO Generating dependency graph for group Filtering Generating dependency graph for group SpectraPreprocessers Generating dependency graph for group SpectraFilter Generating dependency graph for group PeakMarker Generating dependency graph for group Analysis Generating dependency graph for group SignalProcessing Generating dependency graph for group PeakPicking Generating dependency graph for group FeatureFinder Generating dependency graph for group MapAlignment Generating dependency graph for group FeatureGrouping Generating dependency graph for group Analysis_ID Generating dependency graph for group SpectraClustering Generating dependency graph for group Visual Generating dependency graph for group SpectrumWidgets Generating dependency graph for group TOPPView_elements Generating dependency graph for group TOPPAS_elements Generating dependency graph for group Dialogs Generating class documentation... Generating docs for compound NucleicAcidSearchEngine... Generating docs for nested compound NucleicAcidSearchEngine::HasInvalidLength... Generating docs for nested compound NucleicAcidSearchEngine::PrecursorInfo... Generating docs for compound TOPPBase... Generating docs for compound TOPPGNPSExport... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating docs for namespace OpenMS Generating graph info page... Generating directory documentation... Generating dependency graph for directory doxygen Generating dependency graph for directory install Generating dependency graph for directory OpenMS_tutorial Generating dependency graph for directory public Generating dependency graph for directory TOPP_tutorial Generating index page... Generating main page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating graphical class hierarchy... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... Running dot... Generating dot graphs using 13 parallel threads... 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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "The documentation has been successfully created." The documentation has been successfully created. cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "You can now open 'doc/index.html' in a web browser." You can now open 'doc/index.html' in a web browser. cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "We build only a minimal doc since OpenMS was configured without HAS_XSERVER=Off." We build only a minimal doc since OpenMS was configured without HAS_XSERVER=Off. cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "If you want the full doc, either execute cmake --build . --target doc manually" If you want the full doc, either execute cmake --build . --target doc manually cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "or rerun cmake with -DHAS_XSERVER=On." or rerun cmake with -DHAS_XSERVER=On. cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Built target doc_minimal make -f doc/CMakeFiles/doc_tutorials.dir/build.make doc/CMakeFiles/doc_tutorials.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/CMakeFiles/doc_tutorials.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f doc/CMakeFiles/doc_tutorials.dir/build.make doc/CMakeFiles/doc_tutorials.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Build the OpenMS/TOPP pdf tutorial cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "" cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "Creating OpenMS pdf tutorial" Creating OpenMS pdf tutorial cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "" cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E remove_directory OpenMS_tutorial/latex_output cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E chdir OpenMS_tutorial/ /usr/bin/doxygen Doxyfile warning: Tag 'TCL_SUBST' at line 247 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 1046 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 1182 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1463 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1751 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 1767 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'RTF_SOURCE_CODE' at line 1833 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOCBOOK_PROGRAMLISTING' at line 1931 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 2111 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 2124 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 2133 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 2175 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 2182 of file 'Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 2406 of file 'Doxyfile' has become obsolete. 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Transcript written on refman.log. cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E copy OpenMS_tutorial/latex_output/refman.pdf OpenMS_tutorial.pdf cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "" cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "The OpenMS tutorial in PDF format has been successfully created:" The OpenMS tutorial in PDF format has been successfully created: cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo doc/OpenMS_tutorial.pdf doc/OpenMS_tutorial.pdf cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "" cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "Creating TOPP/TOPPView pdf tutorial" Creating TOPP/TOPPView pdf tutorial cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "" cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E remove_directory TOPP_tutorial/latex_output cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E chdir TOPP_tutorial/ /usr/bin/doxygen Doxyfile warning: Tag 'TCL_SUBST' at line 247 of file 'Doxyfile' has become obsolete. 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The com-bined re-sults ca n then be ex-ported by the \OT1/ntxtlf/b/n/10 Text[]Exporter \OT1/minntx/m/n/10 tool[]: [] [44 <./TOPP_consensus_id.png (PNG copy)>]) [45] (./TOPP_example_convert.tex) [46] (./TOPP_example_qualitycontrol.tex Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 1460) in paragraph at lines 177--177 \OT1/minntx/m/n/10 The Fragment[]Mass[]Error met-ric com-putes a list Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 4108) in paragraph at lines 177--177 []\OT1/minntx/m/n/10 Frequency map of missed cleav-ages as Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 2237) in paragraph at lines 177--177 []\TS1/ntxtlf/m/n/10 '\OT1/minntx/m/n/10 activation[][][]method\TS1/ntxtlf/m/n/ 10 '\OT1/minntx/m/n/10 set to ac-ti-va-tion method Underfull \hbox (badness 2435) in paragraph at lines 177--177 []\TS1/ntxtlf/m/n/10 '\OT1/minntx/m/n/10 base[][][]peak[][][]intensity\TS1/ntxt lf/m/n/10 '\OT1/minntx/m/n/10 set to high-est in-ten-sity Underfull \hbox (badness 10000) in paragraph at lines 177--177 [47 <./TOPP_qualitycontrol.png>] [48] [49] [50]) [51] (./refman.aux) LaTeX Font Warning: Some font shapes were not available, defaults substituted. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `refman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information) Output written on refman.pdf (52 pages, 1801570 bytes). Transcript written on refman.log. cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E chdir TOPP_tutorial/latex_output/ /usr/bin/makeindex refman.idx This is makeindex, version 2.17 [TeX Live 2025/dev] (kpathsea + Thai support). Scanning input file refman.idx....done (26 entries accepted, 0 rejected). Sorting entries....done (131 comparisons). Generating output file refman.ind....done (66 lines written, 0 warnings). Output written in refman.ind. Transcript written in refman.ilg. cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E chdir TOPP_tutorial/latex_output/ /usr/bin/pdflatex refman.tex This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./refman.tex LaTeX2e <2023-11-01> patch level 1 L3 programming layer <2024-03-14> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2023/05/17 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/newtx/newtxtext.sty `newtxtext' v1.738, 2024/02/08 Text macros taking advantage of TeXGyre Termes a nd its extensions (msharpe) (/usr/share/texlive/texmf-dist/tex/latex/xpatch/xpatch.sty (/usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def)) (/usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty) (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics/mathcolor.ltx)) (/usr/share/texlive/texmf-dist/tex/latex/xkeyval/xkeyval.sty (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex (/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkvutils.tex))) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/generic/xstring/xstring.sty (/usr/share/texlive/texmf-dist/tex/generic/xstring/xstring.tex)) (/usr/share/texlive/texmf-dist/tex/latex/carlisle/scalefnt.sty) (/usr/share/texlive/texmf-dist/tex/generic/kastrup/binhex.tex) (/usr/share/texlive/texmf-dist/tex/latex/fontaxes/fontaxes.sty)) (/usr/share/texlive/texmf-dist/tex/latex/newtx/newtxmath.sty `newtxmath' v1.742, 2024/03/06 Math macros based originally on txfonts (msharpe ) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. 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LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information) Output written on refman.pdf (54 pages, 1812069 bytes). 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The com-bined re-sults ca n then be ex-ported by the \OT1/ntxtlf/b/n/10 Text[]Exporter \OT1/minntx/m/n/10 tool[]: [] [46 <./TOPP_consensus_id.png (PNG copy)>]) [47] (./TOPP_example_convert.tex) [48] (./TOPP_example_qualitycontrol.tex Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 1460) in paragraph at lines 177--177 \OT1/minntx/m/n/10 The Fragment[]Mass[]Error met-ric com-putes a list Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 4108) in paragraph at lines 177--177 []\OT1/minntx/m/n/10 Frequency map of missed cleav-ages as Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 10000) in paragraph at lines 177--177 Underfull \hbox (badness 2237) in paragraph at lines 177--177 []\TS1/ntxtlf/m/n/10 '\OT1/minntx/m/n/10 activation[][][]method\TS1/ntxtlf/m/n/ 10 '\OT1/minntx/m/n/10 set to ac-ti-va-tion method Underfull \hbox (badness 2435) in paragraph at lines 177--177 []\TS1/ntxtlf/m/n/10 '\OT1/minntx/m/n/10 base[][][]peak[][][]intensity\TS1/ntxt lf/m/n/10 '\OT1/minntx/m/n/10 set to high-est in-ten-sity Underfull \hbox (badness 10000) in paragraph at lines 177--177 [49 <./TOPP_qualitycontrol.png>] [50] [51] [52]) [53] (./refman.aux) LaTeX Font Warning: Some font shapes were not available, defaults substituted. ) (see the transcript file for additional information) Output written on refman.pdf (54 pages, 1812075 bytes). Transcript written on refman.log. cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E copy TOPP_tutorial/latex_output/refman.pdf TOPP_tutorial.pdf cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "" cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "The OpenMS tutorial in PDF format has been successfully created:" The OpenMS tutorial in PDF format has been successfully created: cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo doc/TOPP_tutorial.pdf doc/TOPP_tutorial.pdf cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc && /usr/bin/cmake -E echo "" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Built target doc_tutorials make -f doc/code_examples/CMakeFiles/Tutorial_AASequence.dir/build.make 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Tutorial_AASequence make -f doc/code_examples/CMakeFiles/Tutorial_Clustering.dir/build.make doc/code_examples/CMakeFiles/Tutorial_Clustering.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples/CMakeFiles/Tutorial_Clustering.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f doc/code_examples/CMakeFiles/Tutorial_Clustering.dir/build.make doc/code_examples/CMakeFiles/Tutorial_Clustering.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Building CXX object doc/code_examples/CMakeFiles/Tutorial_Clustering.dir/Tutorial_Clustering.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian 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-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT doc/code_examples/CMakeFiles/Tutorial_Clustering.dir/Tutorial_Clustering.cpp.o -MF CMakeFiles/Tutorial_Clustering.dir/Tutorial_Clustering.cpp.o.d -o CMakeFiles/Tutorial_Clustering.dir/Tutorial_Clustering.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_Clustering.cpp [ 94%] Linking CXX executable ../../bin/Tutorial_Clustering cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_Clustering.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time 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/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Built target Tutorial_Clustering make -f doc/code_examples/CMakeFiles/Tutorial_ComparatorUtils.dir/build.make doc/code_examples/CMakeFiles/Tutorial_ComparatorUtils.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples/CMakeFiles/Tutorial_ComparatorUtils.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f doc/code_examples/CMakeFiles/Tutorial_ComparatorUtils.dir/build.make doc/code_examples/CMakeFiles/Tutorial_ComparatorUtils.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Building CXX object doc/code_examples/CMakeFiles/Tutorial_ComparatorUtils.dir/Tutorial_ComparatorUtils.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT doc/code_examples/CMakeFiles/Tutorial_ComparatorUtils.dir/Tutorial_ComparatorUtils.cpp.o -MF CMakeFiles/Tutorial_ComparatorUtils.dir/Tutorial_ComparatorUtils.cpp.o.d -o CMakeFiles/Tutorial_ComparatorUtils.dir/Tutorial_ComparatorUtils.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_ComparatorUtils.cpp /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_ComparatorUtils.cpp:81:8: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 81 | std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/functional:49, from /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include/OpenMS/KERNEL/ComparatorUtils.h:38, from /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_ComparatorUtils.cpp:31: /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_ComparatorUtils.cpp:88:8: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 88 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_ComparatorUtils.cpp:95:8: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 95 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 94%] Linking CXX executable ../../bin/Tutorial_ComparatorUtils cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_ComparatorUtils.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_ComparatorUtils.dir/Tutorial_ComparatorUtils.cpp.o -o ../../bin/Tutorial_ComparatorUtils ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Built target Tutorial_ComparatorUtils make -f doc/code_examples/CMakeFiles/Tutorial_DPosition.dir/build.make doc/code_examples/CMakeFiles/Tutorial_DPosition.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples/CMakeFiles/Tutorial_DPosition.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f doc/code_examples/CMakeFiles/Tutorial_DPosition.dir/build.make doc/code_examples/CMakeFiles/Tutorial_DPosition.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Building CXX object doc/code_examples/CMakeFiles/Tutorial_DPosition.dir/Tutorial_DPosition.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem 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-MF CMakeFiles/Tutorial_DPosition.dir/Tutorial_DPosition.cpp.o.d -o CMakeFiles/Tutorial_DPosition.dir/Tutorial_DPosition.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_DPosition.cpp [ 94%] Linking CXX executable ../../bin/Tutorial_DPosition cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_DPosition.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_DPosition.dir/Tutorial_DPosition.cpp.o -o ../../bin/Tutorial_DPosition ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so 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/usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Built target Tutorial_DPosition make -f doc/code_examples/CMakeFiles/Tutorial_DRange.dir/build.make doc/code_examples/CMakeFiles/Tutorial_DRange.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples/CMakeFiles/Tutorial_DRange.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f doc/code_examples/CMakeFiles/Tutorial_DRange.dir/build.make doc/code_examples/CMakeFiles/Tutorial_DRange.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 94%] Building CXX object doc/code_examples/CMakeFiles/Tutorial_DRange.dir/Tutorial_DRange.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem 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-Wno-variadic-macros -fPIC -fopenmp -MD -MT doc/code_examples/CMakeFiles/Tutorial_DRange.dir/Tutorial_DRange.cpp.o -MF CMakeFiles/Tutorial_DRange.dir/Tutorial_DRange.cpp.o.d -o CMakeFiles/Tutorial_DRange.dir/Tutorial_DRange.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_DRange.cpp [ 95%] Linking CXX executable ../../bin/Tutorial_DRange cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_DRange.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_DRange.dir/Tutorial_DRange.cpp.o -o ../../bin/Tutorial_DRange ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 95%] Built target Tutorial_DRange make -f doc/code_examples/CMakeFiles/Tutorial_Element.dir/build.make doc/code_examples/CMakeFiles/Tutorial_Element.dir/depend make[4]: Entering directory 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-Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT doc/code_examples/CMakeFiles/Tutorial_Element.dir/Tutorial_Element.cpp.o -MF CMakeFiles/Tutorial_Element.dir/Tutorial_Element.cpp.o.d -o CMakeFiles/Tutorial_Element.dir/Tutorial_Element.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_Element.cpp [ 95%] Linking CXX executable ../../bin/Tutorial_Element cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_Element.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_Element.dir/Tutorial_Element.cpp.o -o ../../bin/Tutorial_Element 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/usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 95%] Built target Tutorial_Element make -f 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'/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 95%] Building CXX object doc/code_examples/CMakeFiles/Tutorial_Enzyme.dir/Tutorial_Enzyme.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT doc/code_examples/CMakeFiles/Tutorial_EmpiricalFormula.dir/Tutorial_EmpiricalFormula.cpp.o -MF CMakeFiles/Tutorial_EmpiricalFormula.dir/Tutorial_EmpiricalFormula.cpp.o.d -o CMakeFiles/Tutorial_EmpiricalFormula.dir/Tutorial_EmpiricalFormula.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_EmpiricalFormula.cpp [ 95%] Linking CXX executable ../../bin/Tutorial_EmpiricalFormula cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_EmpiricalFormula.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. 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/usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 95%] Built target Tutorial_EmpiricalFormula make -f doc/code_examples/CMakeFiles/Tutorial_FeatureFinder.dir/build.make doc/code_examples/CMakeFiles/Tutorial_FeatureFinder.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples 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../../bin/Tutorial_FeatureFinder cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_FeatureFinder.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_FeatureFinder.dir/Tutorial_FeatureFinder.cpp.o -o ../../bin/Tutorial_FeatureFinder ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 95%] Built target Tutorial_FeatureFinder make -f doc/code_examples/CMakeFiles/Tutorial_FeatureMap.dir/build.make doc/code_examples/CMakeFiles/Tutorial_FeatureMap.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples/CMakeFiles/Tutorial_FeatureMap.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f doc/code_examples/CMakeFiles/Tutorial_FeatureMap.dir/build.make doc/code_examples/CMakeFiles/Tutorial_FeatureMap.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 95%] Building CXX object doc/code_examples/CMakeFiles/Tutorial_FeatureMap.dir/Tutorial_FeatureMap.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem 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/build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_FeatureMap.cpp [ 95%] Linking CXX executable ../../bin/Tutorial_FeatureMap cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_FeatureMap.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_FeatureMap.dir/Tutorial_FeatureMap.cpp.o -o ../../bin/Tutorial_FeatureMap ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so 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/usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 95%] Built target Tutorial_FeatureMap make -f doc/code_examples/CMakeFiles/Tutorial_FileIO.dir/build.make doc/code_examples/CMakeFiles/Tutorial_FileIO.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples/CMakeFiles/Tutorial_FileIO.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f doc/code_examples/CMakeFiles/Tutorial_FileIO.dir/build.make doc/code_examples/CMakeFiles/Tutorial_FileIO.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 95%] Building CXX object doc/code_examples/CMakeFiles/Tutorial_FileIO.dir/Tutorial_FileIO.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT doc/code_examples/CMakeFiles/Tutorial_FileIO.dir/Tutorial_FileIO.cpp.o -MF CMakeFiles/Tutorial_FileIO.dir/Tutorial_FileIO.cpp.o.d -o CMakeFiles/Tutorial_FileIO.dir/Tutorial_FileIO.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_FileIO.cpp [ 95%] Linking CXX executable ../../bin/Tutorial_FileIO cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_FileIO.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_FileIO.dir/Tutorial_FileIO.cpp.o -o ../../bin/Tutorial_FileIO ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 95%] Built target Tutorial_FileIO make -f doc/code_examples/CMakeFiles/Tutorial_FileIO_mzML.dir/build.make doc/code_examples/CMakeFiles/Tutorial_FileIO_mzML.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix 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doc/code_examples/CMakeFiles/Tutorial_FileIO_mzML.dir/Tutorial_FileIO_mzML.cpp.o -MF CMakeFiles/Tutorial_FileIO_mzML.dir/Tutorial_FileIO_mzML.cpp.o.d -o CMakeFiles/Tutorial_FileIO_mzML.dir/Tutorial_FileIO_mzML.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_FileIO_mzML.cpp [ 95%] Linking CXX executable ../../bin/Tutorial_FileIO_mzML cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_FileIO_mzML.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_FileIO_mzML.dir/Tutorial_FileIO_mzML.cpp.o -o ../../bin/Tutorial_FileIO_mzML ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 95%] Built target Tutorial_FileIO_mzML make -f doc/code_examples/CMakeFiles/Tutorial_FileIO_Consumer.dir/build.make 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'/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Building CXX object doc/code_examples/CMakeFiles/Tutorial_FileIO_Consumer.dir/Tutorial_FileIO_Consumer.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT doc/code_examples/CMakeFiles/Tutorial_FileIO_Consumer.dir/Tutorial_FileIO_Consumer.cpp.o -MF CMakeFiles/Tutorial_FileIO_Consumer.dir/Tutorial_FileIO_Consumer.cpp.o.d -o CMakeFiles/Tutorial_FileIO_Consumer.dir/Tutorial_FileIO_Consumer.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_FileIO_Consumer.cpp [ 96%] Linking CXX executable ../../bin/Tutorial_FileIO_Consumer cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_FileIO_Consumer.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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'/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target Tutorial_FileIO_Consumer make -f doc/code_examples/CMakeFiles/Tutorial_GaussFilter.dir/build.make doc/code_examples/CMakeFiles/Tutorial_GaussFilter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples/CMakeFiles/Tutorial_GaussFilter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f 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/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT doc/code_examples/CMakeFiles/Tutorial_GaussFilter.dir/Tutorial_GaussFilter.cpp.o -MF CMakeFiles/Tutorial_GaussFilter.dir/Tutorial_GaussFilter.cpp.o.d -o CMakeFiles/Tutorial_GaussFilter.dir/Tutorial_GaussFilter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_GaussFilter.cpp [ 96%] Linking CXX executable ../../bin/Tutorial_GaussFilter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_GaussFilter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_GaussFilter.dir/Tutorial_GaussFilter.cpp.o -o ../../bin/Tutorial_GaussFilter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Built target Tutorial_GaussFilter make -f doc/code_examples/CMakeFiles/Tutorial_IdentificationClasses.dir/build.make doc/code_examples/CMakeFiles/Tutorial_IdentificationClasses.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples/CMakeFiles/Tutorial_IdentificationClasses.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f doc/code_examples/CMakeFiles/Tutorial_IdentificationClasses.dir/build.make doc/code_examples/CMakeFiles/Tutorial_IdentificationClasses.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 96%] Building CXX object doc/code_examples/CMakeFiles/Tutorial_IdentificationClasses.dir/Tutorial_IdentificationClasses.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem 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/build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_IdentificationClasses.cpp [ 96%] Linking CXX executable ../../bin/Tutorial_IdentificationClasses cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_IdentificationClasses.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_IdentificationClasses.dir/Tutorial_IdentificationClasses.cpp.o -o ../../bin/Tutorial_IdentificationClasses ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so 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"Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples/CMakeFiles/Tutorial_Labeled.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f doc/code_examples/CMakeFiles/Tutorial_Labeled.dir/build.make doc/code_examples/CMakeFiles/Tutorial_Labeled.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Building CXX object doc/code_examples/CMakeFiles/Tutorial_Labeled.dir/Tutorial_Labeled.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT doc/code_examples/CMakeFiles/Tutorial_Labeled.dir/Tutorial_Labeled.cpp.o -MF CMakeFiles/Tutorial_Labeled.dir/Tutorial_Labeled.cpp.o.d -o CMakeFiles/Tutorial_Labeled.dir/Tutorial_Labeled.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_Labeled.cpp [ 97%] Linking CXX executable ../../bin/Tutorial_Labeled cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_Labeled.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_Labeled.dir/Tutorial_Labeled.cpp.o -o ../../bin/Tutorial_Labeled ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Built target Tutorial_Labeled make -f doc/code_examples/CMakeFiles/Tutorial_MSChromatogram.dir/build.make doc/code_examples/CMakeFiles/Tutorial_MSChromatogram.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples/CMakeFiles/Tutorial_MSChromatogram.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f doc/code_examples/CMakeFiles/Tutorial_MSChromatogram.dir/build.make doc/code_examples/CMakeFiles/Tutorial_MSChromatogram.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Building CXX object doc/code_examples/CMakeFiles/Tutorial_MSChromatogram.dir/Tutorial_MSChromatogram.cpp.o cd 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-Wno-variadic-macros -fPIC -fopenmp -MD -MT doc/code_examples/CMakeFiles/Tutorial_MSChromatogram.dir/Tutorial_MSChromatogram.cpp.o -MF CMakeFiles/Tutorial_MSChromatogram.dir/Tutorial_MSChromatogram.cpp.o.d -o CMakeFiles/Tutorial_MSChromatogram.dir/Tutorial_MSChromatogram.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_MSChromatogram.cpp [ 97%] Linking CXX executable ../../bin/Tutorial_MSChromatogram cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_MSChromatogram.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_MSChromatogram.dir/Tutorial_MSChromatogram.cpp.o -o ../../bin/Tutorial_MSChromatogram ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Built target Tutorial_MSChromatogram make -f doc/code_examples/CMakeFiles/Tutorial_MSExperiment.dir/build.make doc/code_examples/CMakeFiles/Tutorial_MSExperiment.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples/CMakeFiles/Tutorial_MSExperiment.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f doc/code_examples/CMakeFiles/Tutorial_MSExperiment.dir/build.make doc/code_examples/CMakeFiles/Tutorial_MSExperiment.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Building CXX object doc/code_examples/CMakeFiles/Tutorial_MSExperiment.dir/Tutorial_MSExperiment.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 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-Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_MSExperiment.dir/Tutorial_MSExperiment.cpp.o -o ../../bin/Tutorial_MSExperiment ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so 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'/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Built target Tutorial_MSExperiment make -f doc/code_examples/CMakeFiles/Tutorial_MSSpectrum.dir/build.make doc/code_examples/CMakeFiles/Tutorial_MSSpectrum.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples/CMakeFiles/Tutorial_MSSpectrum.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f 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-ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT doc/code_examples/CMakeFiles/Tutorial_MSSpectrum.dir/Tutorial_MSSpectrum.cpp.o -MF CMakeFiles/Tutorial_MSSpectrum.dir/Tutorial_MSSpectrum.cpp.o.d -o CMakeFiles/Tutorial_MSSpectrum.dir/Tutorial_MSSpectrum.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_MSSpectrum.cpp [ 97%] Linking CXX executable ../../bin/Tutorial_MSSpectrum cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_MSSpectrum.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_MSSpectrum.dir/Tutorial_MSSpectrum.cpp.o -o ../../bin/Tutorial_MSSpectrum ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so 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/usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Built target Tutorial_MSSpectrum make -f doc/code_examples/CMakeFiles/Tutorial_MapAlignment.dir/build.make doc/code_examples/CMakeFiles/Tutorial_MapAlignment.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples/CMakeFiles/Tutorial_MapAlignment.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f doc/code_examples/CMakeFiles/Tutorial_MapAlignment.dir/build.make doc/code_examples/CMakeFiles/Tutorial_MapAlignment.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Building CXX object doc/code_examples/CMakeFiles/Tutorial_MapAlignment.dir/Tutorial_MapAlignment.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem 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/usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Built target Tutorial_MapAlignment make -f doc/code_examples/CMakeFiles/Tutorial_MetaInfo.dir/build.make doc/code_examples/CMakeFiles/Tutorial_MetaInfo.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples 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/usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Built target Tutorial_Param make -f doc/code_examples/CMakeFiles/Tutorial_PeakPickerCWT.dir/build.make doc/code_examples/CMakeFiles/Tutorial_PeakPickerCWT.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples 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/build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_PeakPickerCWT.cpp [ 97%] Linking CXX executable ../../bin/Tutorial_PeakPickerCWT cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_PeakPickerCWT.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_PeakPickerCWT.dir/Tutorial_PeakPickerCWT.cpp.o -o ../../bin/Tutorial_PeakPickerCWT ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so 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"Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples/CMakeFiles/Tutorial_Precursor.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f doc/code_examples/CMakeFiles/Tutorial_Precursor.dir/build.make doc/code_examples/CMakeFiles/Tutorial_Precursor.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Building CXX object doc/code_examples/CMakeFiles/Tutorial_Precursor.dir/Tutorial_Precursor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB 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-MF CMakeFiles/Tutorial_Precursor.dir/Tutorial_Precursor.cpp.o.d -o CMakeFiles/Tutorial_Precursor.dir/Tutorial_Precursor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_Precursor.cpp [ 97%] Linking CXX executable ../../bin/Tutorial_Precursor cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_Precursor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_Precursor.dir/Tutorial_Precursor.cpp.o -o ../../bin/Tutorial_Precursor ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so 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/usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Built target Tutorial_Precursor make -f doc/code_examples/CMakeFiles/Tutorial_RangeManager.dir/build.make doc/code_examples/CMakeFiles/Tutorial_RangeManager.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples/CMakeFiles/Tutorial_RangeManager.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f doc/code_examples/CMakeFiles/Tutorial_RangeManager.dir/build.make doc/code_examples/CMakeFiles/Tutorial_RangeManager.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Building CXX object doc/code_examples/CMakeFiles/Tutorial_RangeManager.dir/Tutorial_RangeManager.cpp.o cd 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-Wno-variadic-macros -fPIC -fopenmp -MD -MT doc/code_examples/CMakeFiles/Tutorial_RangeManager.dir/Tutorial_RangeManager.cpp.o -MF CMakeFiles/Tutorial_RangeManager.dir/Tutorial_RangeManager.cpp.o.d -o CMakeFiles/Tutorial_RangeManager.dir/Tutorial_RangeManager.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_RangeManager.cpp [ 97%] Linking CXX executable ../../bin/Tutorial_RangeManager cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_RangeManager.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_RangeManager.dir/Tutorial_RangeManager.cpp.o -o ../../bin/Tutorial_RangeManager ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 97%] Built target Tutorial_RangeManager make -f 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT doc/code_examples/CMakeFiles/Tutorial_ResidueModification.dir/Tutorial_ResidueModification.cpp.o -MF CMakeFiles/Tutorial_ResidueModification.dir/Tutorial_ResidueModification.cpp.o.d -o CMakeFiles/Tutorial_ResidueModification.dir/Tutorial_ResidueModification.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_ResidueModification.cpp [ 98%] Linking CXX executable ../../bin/Tutorial_ResidueModification cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_ResidueModification.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 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/usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target Tutorial_ResidueModification make -f doc/code_examples/CMakeFiles/Tutorial_SavitzkyGolayFilter.dir/build.make doc/code_examples/CMakeFiles/Tutorial_SavitzkyGolayFilter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples 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/build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem 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/usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target Tutorial_SavitzkyGolayFilter make -f doc/code_examples/CMakeFiles/Tutorial_TOFCalibration.dir/build.make doc/code_examples/CMakeFiles/Tutorial_TOFCalibration.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples/CMakeFiles/Tutorial_TOFCalibration.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f doc/code_examples/CMakeFiles/Tutorial_TOFCalibration.dir/build.make doc/code_examples/CMakeFiles/Tutorial_TOFCalibration.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Building CXX object doc/code_examples/CMakeFiles/Tutorial_TOFCalibration.dir/Tutorial_TOFCalibration.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem 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CMakeFiles/Tutorial_TOFCalibration.dir/Tutorial_TOFCalibration.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_TOFCalibration.cpp [ 98%] Linking CXX executable ../../bin/Tutorial_TOFCalibration cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_TOFCalibration.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_TOFCalibration.dir/Tutorial_TOFCalibration.cpp.o -o ../../bin/Tutorial_TOFCalibration ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target Tutorial_TOFCalibration make -f doc/code_examples/CMakeFiles/Tutorial_TheoreticalSpectrumGenerator.dir/build.make doc/code_examples/CMakeFiles/Tutorial_TheoreticalSpectrumGenerator.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples/CMakeFiles/Tutorial_TheoreticalSpectrumGenerator.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f doc/code_examples/CMakeFiles/Tutorial_TheoreticalSpectrumGenerator.dir/build.make doc/code_examples/CMakeFiles/Tutorial_TheoreticalSpectrumGenerator.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Building CXX object doc/code_examples/CMakeFiles/Tutorial_TheoreticalSpectrumGenerator.dir/Tutorial_TheoreticalSpectrumGenerator.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT doc/code_examples/CMakeFiles/Tutorial_TheoreticalSpectrumGenerator.dir/Tutorial_TheoreticalSpectrumGenerator.cpp.o -MF CMakeFiles/Tutorial_TheoreticalSpectrumGenerator.dir/Tutorial_TheoreticalSpectrumGenerator.cpp.o.d -o CMakeFiles/Tutorial_TheoreticalSpectrumGenerator.dir/Tutorial_TheoreticalSpectrumGenerator.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_TheoreticalSpectrumGenerator.cpp [ 98%] Linking CXX executable ../../bin/Tutorial_TheoreticalSpectrumGenerator cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_TheoreticalSpectrumGenerator.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_TheoreticalSpectrumGenerator.dir/Tutorial_TheoreticalSpectrumGenerator.cpp.o -o ../../bin/Tutorial_TheoreticalSpectrumGenerator ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Built target Tutorial_TheoreticalSpectrumGenerator make -f doc/code_examples/CMakeFiles/Tutorial_MorphologicalFilter.dir/build.make doc/code_examples/CMakeFiles/Tutorial_MorphologicalFilter.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples/CMakeFiles/Tutorial_MorphologicalFilter.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f doc/code_examples/CMakeFiles/Tutorial_MorphologicalFilter.dir/build.make doc/code_examples/CMakeFiles/Tutorial_MorphologicalFilter.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [ 98%] Building CXX object doc/code_examples/CMakeFiles/Tutorial_MorphologicalFilter.dir/Tutorial_MorphologicalFilter.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT doc/code_examples/CMakeFiles/Tutorial_MorphologicalFilter.dir/Tutorial_MorphologicalFilter.cpp.o -MF CMakeFiles/Tutorial_MorphologicalFilter.dir/Tutorial_MorphologicalFilter.cpp.o.d -o CMakeFiles/Tutorial_MorphologicalFilter.dir/Tutorial_MorphologicalFilter.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_MorphologicalFilter.cpp [100%] Linking CXX executable ../../bin/Tutorial_MorphologicalFilter cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_MorphologicalFilter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_MorphologicalFilter.dir/Tutorial_MorphologicalFilter.cpp.o -o ../../bin/Tutorial_MorphologicalFilter ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Built target Tutorial_MorphologicalFilter make -f doc/code_examples/CMakeFiles/Tutorial_Unlabeled.dir/build.make doc/code_examples/CMakeFiles/Tutorial_Unlabeled.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples/CMakeFiles/Tutorial_Unlabeled.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f doc/code_examples/CMakeFiles/Tutorial_Unlabeled.dir/build.make doc/code_examples/CMakeFiles/Tutorial_Unlabeled.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Building CXX object doc/code_examples/CMakeFiles/Tutorial_Unlabeled.dir/Tutorial_Unlabeled.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT doc/code_examples/CMakeFiles/Tutorial_Unlabeled.dir/Tutorial_Unlabeled.cpp.o -MF CMakeFiles/Tutorial_Unlabeled.dir/Tutorial_Unlabeled.cpp.o.d -o CMakeFiles/Tutorial_Unlabeled.dir/Tutorial_Unlabeled.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_Unlabeled.cpp [100%] Linking CXX executable ../../bin/Tutorial_Unlabeled cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_Unlabeled.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_Unlabeled.dir/Tutorial_Unlabeled.cpp.o -o ../../bin/Tutorial_Unlabeled ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Built target Tutorial_Unlabeled make -f doc/code_examples/CMakeFiles/Tutorial_typeAsString.dir/build.make doc/code_examples/CMakeFiles/Tutorial_typeAsString.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples/CMakeFiles/Tutorial_typeAsString.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f doc/code_examples/CMakeFiles/Tutorial_typeAsString.dir/build.make doc/code_examples/CMakeFiles/Tutorial_typeAsString.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Building CXX object doc/code_examples/CMakeFiles/Tutorial_typeAsString.dir/Tutorial_typeAsString.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT doc/code_examples/CMakeFiles/Tutorial_typeAsString.dir/Tutorial_typeAsString.cpp.o -MF CMakeFiles/Tutorial_typeAsString.dir/Tutorial_typeAsString.cpp.o.d -o CMakeFiles/Tutorial_typeAsString.dir/Tutorial_typeAsString.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_typeAsString.cpp [100%] Linking CXX executable ../../bin/Tutorial_typeAsString cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_typeAsString.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_typeAsString.dir/Tutorial_typeAsString.cpp.o -o ../../bin/Tutorial_typeAsString ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Built target Tutorial_typeAsString make -f doc/code_examples/CMakeFiles/Tutorial_PeakIntensityPredictor.dir/build.make doc/code_examples/CMakeFiles/Tutorial_PeakIntensityPredictor.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples/CMakeFiles/Tutorial_PeakIntensityPredictor.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f doc/code_examples/CMakeFiles/Tutorial_PeakIntensityPredictor.dir/build.make doc/code_examples/CMakeFiles/Tutorial_PeakIntensityPredictor.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Building CXX object doc/code_examples/CMakeFiles/Tutorial_PeakIntensityPredictor.dir/Tutorial_PeakIntensityPredictor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT doc/code_examples/CMakeFiles/Tutorial_PeakIntensityPredictor.dir/Tutorial_PeakIntensityPredictor.cpp.o -MF CMakeFiles/Tutorial_PeakIntensityPredictor.dir/Tutorial_PeakIntensityPredictor.cpp.o.d -o CMakeFiles/Tutorial_PeakIntensityPredictor.dir/Tutorial_PeakIntensityPredictor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_PeakIntensityPredictor.cpp [100%] Linking CXX executable ../../bin/Tutorial_PeakIntensityPredictor cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_PeakIntensityPredictor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_PeakIntensityPredictor.dir/Tutorial_PeakIntensityPredictor.cpp.o -o ../../bin/Tutorial_PeakIntensityPredictor ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Built target Tutorial_PeakIntensityPredictor make -f doc/code_examples/CMakeFiles/Tutorial_GUI_Spectrum1D.dir/build.make doc/code_examples/CMakeFiles/Tutorial_GUI_Spectrum1D.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples/CMakeFiles/Tutorial_GUI_Spectrum1D.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f doc/code_examples/CMakeFiles/Tutorial_GUI_Spectrum1D.dir/build.make doc/code_examples/CMakeFiles/Tutorial_GUI_Spectrum1D.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Building CXX object doc/code_examples/CMakeFiles/Tutorial_GUI_Spectrum1D.dir/Tutorial_GUI_Spectrum1D.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT doc/code_examples/CMakeFiles/Tutorial_GUI_Spectrum1D.dir/Tutorial_GUI_Spectrum1D.cpp.o -MF CMakeFiles/Tutorial_GUI_Spectrum1D.dir/Tutorial_GUI_Spectrum1D.cpp.o.d -o CMakeFiles/Tutorial_GUI_Spectrum1D.dir/Tutorial_GUI_Spectrum1D.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_GUI_Spectrum1D.cpp [100%] Linking CXX executable ../../bin/Tutorial_GUI_Spectrum1D cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_GUI_Spectrum1D.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_GUI_Spectrum1D.dir/Tutorial_GUI_Spectrum1D.cpp.o -o ../../bin/Tutorial_GUI_Spectrum1D ../../lib/x86_64-linux-gnu/libOpenMS_GUI.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 /usr/lib/x86_64-linux-gnu/libQt5Svg.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Svg.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Built target Tutorial_GUI_Spectrum1D make -f doc/code_examples/CMakeFiles/Tutorial_GUI_ParamEditor.dir/build.make doc/code_examples/CMakeFiles/Tutorial_GUI_ParamEditor.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples/CMakeFiles/Tutorial_GUI_ParamEditor.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f doc/code_examples/CMakeFiles/Tutorial_GUI_ParamEditor.dir/build.make doc/code_examples/CMakeFiles/Tutorial_GUI_ParamEditor.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Building CXX object doc/code_examples/CMakeFiles/Tutorial_GUI_ParamEditor.dir/Tutorial_GUI_ParamEditor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT doc/code_examples/CMakeFiles/Tutorial_GUI_ParamEditor.dir/Tutorial_GUI_ParamEditor.cpp.o -MF CMakeFiles/Tutorial_GUI_ParamEditor.dir/Tutorial_GUI_ParamEditor.cpp.o.d -o CMakeFiles/Tutorial_GUI_ParamEditor.dir/Tutorial_GUI_ParamEditor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_GUI_ParamEditor.cpp [100%] Linking CXX executable ../../bin/Tutorial_GUI_ParamEditor cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_GUI_ParamEditor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_GUI_ParamEditor.dir/Tutorial_GUI_ParamEditor.cpp.o -o ../../bin/Tutorial_GUI_ParamEditor ../../lib/x86_64-linux-gnu/libOpenMS_GUI.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 /usr/lib/x86_64-linux-gnu/libQt5Svg.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Svg.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Built target Tutorial_GUI_ParamEditor make -f doc/code_examples/CMakeFiles/Tutorial_GUI_ListEditor.dir/build.make doc/code_examples/CMakeFiles/Tutorial_GUI_ListEditor.dir/depend make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openms-2.6.0+cleaned1 /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples/CMakeFiles/Tutorial_GUI_ListEditor.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make -f doc/code_examples/CMakeFiles/Tutorial_GUI_ListEditor.dir/build.make doc/code_examples/CMakeFiles/Tutorial_GUI_ListEditor.dir/build make[4]: Entering directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Building CXX object doc/code_examples/CMakeFiles/Tutorial_GUI_ListEditor.dir/Tutorial_GUI_ListEditor.cpp.o cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/c++ -DBOOST_ALL_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_WIDGETS_LIB -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/include -isystem /usr/lib -isystem /usr/lib/x86_64-linux-gnu/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openms/thirdparty/evergreen/src -isystem /build/reproducible-path/openms-2.6.0+cleaned1/debian -isystem /usr/include/hdf5/serial -isystem /usr/include/libsvm -isystem /usr/include/eigen3 -isystem /usr/include/libwildmagic -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openswathalgo/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/include -isystem /build/reproducible-path/openms-2.6.0+cleaned1/src/openswathalgo/thirdparty/MIToolbox/src -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtNetwork -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtSvg -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fvisibility=hidden -Wall -Wextra -Wno-non-virtual-dtor -Wno-unknown-pragmas -Wno-long-long -Wno-unused-function -Wno-variadic-macros -fPIC -fopenmp -MD -MT doc/code_examples/CMakeFiles/Tutorial_GUI_ListEditor.dir/Tutorial_GUI_ListEditor.cpp.o -MF CMakeFiles/Tutorial_GUI_ListEditor.dir/Tutorial_GUI_ListEditor.cpp.o.d -o CMakeFiles/Tutorial_GUI_ListEditor.dir/Tutorial_GUI_ListEditor.cpp.o -c /build/reproducible-path/openms-2.6.0+cleaned1/doc/code_examples/Tutorial_GUI_ListEditor.cpp [100%] Linking CXX executable ../../bin/Tutorial_GUI_ListEditor cd /build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/doc/code_examples && /usr/bin/cmake -E cmake_link_script CMakeFiles/Tutorial_GUI_ListEditor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openms-2.6.0+cleaned1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/Tutorial_GUI_ListEditor.dir/Tutorial_GUI_ListEditor.cpp.o -o ../../bin/Tutorial_GUI_ListEditor ../../lib/x86_64-linux-gnu/libOpenMS_GUI.so.2.6.0 ../../lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 /usr/lib/x86_64-linux-gnu/libQt5Svg.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 ../../lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 /usr/lib/x86_64-linux-gnu/libCbc.so /usr/lib/x86_64-linux-gnu/libCgl.so /usr/lib/x86_64-linux-gnu/libClp.so /usr/lib/x86_64-linux-gnu/libCoinUtils.so /usr/lib/x86_64-linux-gnu/libOsi.so /usr/lib/x86_64-linux-gnu/libOsiClp.so /usr/lib/x86_64-linux-gnu/libsvm.so /usr/lib/x86_64-linux-gnu/libxerces-c.so /usr/lib/x86_64-linux-gnu/libboost_iostreams.so /usr/lib/x86_64-linux-gnu/libboost_date_time.so /usr/lib/x86_64-linux-gnu/libboost_math_c99.so /usr/lib/x86_64-linux-gnu/libboost_regex.so /usr/lib/x86_64-linux-gnu/libWm5Core.so /usr/lib/x86_64-linux-gnu/libWm5Mathematics.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libsqlite3.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libglpk.so -ldl /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/gcc/x86_64-linux-gnu/13/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libQt5Svg.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Network.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.13 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.13 make[4]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' [100%] Built target Tutorial_GUI_ListEditor make[3]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start 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Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/MATH/MISC/RANSACModelLinear.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/MATH/MISC/RANSACModelQuadratic.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/MATH/MISC/SplineBisection.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/MATH/MISC/NNLS/NNLS.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/MATH/STATISTICS/AsymmetricStatistics.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/MATH/STATISTICS/AveragePosition.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/MATH/STATISTICS/BasicStatistics.h -- Installing: 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/build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/MATH/STATISTICS/RegressionUtils.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/MATH/STATISTICS/QuadraticRegression.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/MATH/STATISTICS/PosteriorErrorProbabilityModel.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/MATH/STATISTICS/ROCCurve.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/MATH/STATISTICS/StatisticFunctions.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/Adduct.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/BinaryTreeNode.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/CalibrationData.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/ChargePair.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/Compomer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/ConstRefVector.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/ConvexHull2D.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/CVMappingTerm.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/CVMappingRule.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/CVReference.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/CVMappings.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/DBoundingBox.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/DIntervalBase.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/DPosition.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/DRange.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/DataValue.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/Date.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/DateTime.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/DefaultParamHandler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/DistanceMatrix.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/FASTAContainer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/GridFeature.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/IsotopeCluster.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/KDTree.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/ListUtils.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/ListUtilsIO.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/LPWrapper.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/Map.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/MassExplainer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/MatchedIterator.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/Matrix.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/Param.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/QTCluster.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/SeqanIncludeWrapper.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/String.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/StringUtils.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/StringListUtils.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/ToolDescription.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/DATASTRUCTURES/Utils/MatrixUtils.h -- Installing: 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Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/ExperimentalSettings.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/Gradient.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/HPLC.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/Identification.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/IdentificationHit.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/Instrument.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/InstrumentSettings.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/IonDetector.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/IonSource.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/MSQuantifications.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/MassAnalyzer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/MetaInfo.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/MetaInfoDescription.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/MetaInfoInterface.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/MetaInfoInterfaceUtils.h -- Installing: 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/build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/ProteinIdentification.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/Sample.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/SampleTreatment.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/ScanWindow.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/Software.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/SourceFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/SpectrumIdentification.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/SpectrumLookup.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/SpectrumMetaDataLookup.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/SpectrumSettings.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/Tagging.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/ID/AppliedProcessingStep.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/ID/DBSearchParam.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/ID/DataProcessingSoftware.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/ID/DataProcessingStep.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/ID/DataQuery.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/ID/IdentificationData.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/ID/IdentificationDataConverter.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/ID/IdentifiedCompound.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/ID/IdentifiedSequence.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/ID/MetaData.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/ID/MoleculeParentMatch.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/ID/MoleculeQueryMatch.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/ID/ParentMolecule.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/ID/ParentMoleculeGroup.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/ID/QueryMatchGroup.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/ID/ScoreType.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/METADATA/ID/ScoredProcessingResult.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/AreaIterator.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/BaseFeature.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/ChromatogramPeak.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/ChromatogramTools.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/ComparatorUtils.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/ConsensusFeature.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/ConversionHelper.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/ConsensusMap.h -- Up-to-date: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/ConversionHelper.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/DPeak.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/Feature.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/FeatureHandle.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/FeatureMap.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/MassTrace.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/MRMFeature.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/MRMTransitionGroup.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/MSChromatogram.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/MSExperiment.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/MSSpectrum.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/OnDiscMSExperiment.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/Peak1D.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/Peak2D.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/PeakIndex.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/RangeManager.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/RangeUtils.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/RichPeak2D.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/StandardTypes.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/StandardDeclarations.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/KERNEL/SpectrumHelper.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/AAIndex.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/AASequence.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/CrossLinksDB.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/DecoyGenerator.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/Element.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/ElementDB.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/EmpiricalFormula.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/EnzymaticDigestionLogModel.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/EnzymaticDigestion.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/DigestionEnzyme.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/DigestionEnzymeProtein.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/DigestionEnzymeRNA.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/DigestionEnzymeDB.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/ModificationDefinition.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/ModificationDefinitionsSet.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/ModifiedNASequenceGenerator.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/ModificationsDB.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/NASequence.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/NucleicAcidSpectrumGenerator.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/ProteaseDB.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/ProteaseDigestion.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/Residue.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/ResidueDB.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/ResidueModification.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/RNaseDB.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/RNaseDigestion.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/Ribonucleotide.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/RibonucleotideDB.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/SimpleTSGXLMS.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/SpectrumAnnotator.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGenerator.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGeneratorSet.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/SvmTheoreticalSpectrumGeneratorTrainer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/Tagger.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/TheoreticalSpectrumGenerator.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/TheoreticalSpectrumGeneratorXLMS.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/WeightWrapper.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/CoarseIsotopePatternGenerator.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/FineIsotopePatternGenerator.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/IsoSpecWrapper.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopeDistribution.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/ISOTOPEDISTRIBUTION/IsotopePatternGenerator.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSAlphabet.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/IntegerMassDecomposer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/MassDecomposer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/RealMassDecomposer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/Weights.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSElement.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSIsotopeDistribution.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSAlphabetParser.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/MASSDECOMPOSITION/IMS/IMSAlphabetTextParser.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/MASSDECOMPOSITION/MassDecomposition.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/CHEMISTRY/MASSDECOMPOSITION/MassDecompositionAlgorithm.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/AbsoluteQuantitationMethodFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/AbsoluteQuantitationStandardsFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/Base64.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/Bzip2Ifstream.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/Bzip2InputStream.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/CachedMzML.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/ChromeleonFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/CompressedInputSource.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/CVMappingFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/ConsensusXMLFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/ControlledVocabulary.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/CsvFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/DTA2DFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/DTAFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/EDTAFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/ExperimentalDesignFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/FASTAFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/FeatureXMLFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/FileHandler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/GzipIfstream.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/GzipInputStream.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/HDF5Connector.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/IBSpectraFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/IdXMLFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/IndexedMzMLFileLoader.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/InspectInfile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/InspectOutfile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/KroenikFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/LibSVMEncoder.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/MRMFeaturePickerFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/MRMFeatureQCFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/MS2File.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/MSNumpressCoder.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/MSPFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/MSPGenericFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/MSstatsFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/MascotInfile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/MascotGenericFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/MascotRemoteQuery.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/MascotXMLFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/MsInspectFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/MzDataFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/MzMLFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/MzTab.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/MzTabFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/MzXMLFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/OMSSACSVFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/OMSSAXMLFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/OSWFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/ParamXMLFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/PTMXMLFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/PeakTypeEstimator.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/PepNovoInfile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/PepNovoOutfile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/PepXMLFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/PepXMLFileMascot.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/PercolatorOutfile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/ProtXMLFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/QcMLFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/SequestInfile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/SequestOutfile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/SpecArrayFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/SVOutStream.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/SwathFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/SqliteConnector.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/SqMassFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/TextFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/ToolDescriptionFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/TransformationXMLFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/UnimodXMLFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/XMLFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/XTandemInfile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/XTandemXMLFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/FileTypes.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/MzIdentMLFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/MzQuantMLFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/TraMLFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/XMassFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/XQuestResultXMLFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/ZlibCompression.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/DATAACCESS/CsiFingerIdMzTabWriter.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/DATAACCESS/MSDataAggregatingConsumer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/DATAACCESS/MSDataCachedConsumer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/DATAACCESS/MSDataChainingConsumer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/DATAACCESS/MSDataStoringConsumer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/DATAACCESS/MSDataSqlConsumer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/DATAACCESS/MSDataTransformingConsumer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/DATAACCESS/MSDataWritingConsumer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/DATAACCESS/NoopMSDataConsumer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/DATAACCESS/SiriusFragmentAnnotation.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/DATAACCESS/SiriusMzTabWriter.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/DATAACCESS/SwathFileConsumer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/HANDLERS/AcqusHandler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/HANDLERS/CachedMzMLHandler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/HANDLERS/FidHandler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/HANDLERS/IndexedMzMLDecoder.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/HANDLERS/IndexedMzMLHandler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/HANDLERS/MascotXMLHandler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/HANDLERS/MzDataHandler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/HANDLERS/MzIdentMLDOMHandler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/HANDLERS/MzIdentMLHandler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/HANDLERS/MzMLHandler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/HANDLERS/MzMLHandlerHelper.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/HANDLERS/MzMLSpectrumDecoder.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/HANDLERS/MzMLSqliteHandler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/HANDLERS/MzMLSqliteSwathHandler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/HANDLERS/MzQuantMLHandler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/HANDLERS/MzXMLHandler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/HANDLERS/PTMXMLHandler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/HANDLERS/ParamXMLHandler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/HANDLERS/ToolDescriptionHandler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/HANDLERS/TraMLHandler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/HANDLERS/UnimodXMLHandler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/HANDLERS/XMLHandler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/HANDLERS/XQuestResultXMLHandler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/VALIDATORS/XMLValidator.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/VALIDATORS/MzMLValidator.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/VALIDATORS/MzDataValidator.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/VALIDATORS/SemanticValidator.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/VALIDATORS/MzIdentMLValidator.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/VALIDATORS/MzQuantMLValidator.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/VALIDATORS/TraMLValidator.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/OPTIONS/FeatureFileOptions.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FORMAT/OPTIONS/PeakFileOptions.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/DECHARGING/FeatureDeconvolution.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/DECHARGING/MetaboliteFeatureDeconvolution.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/DECHARGING/ILPDCWrapper.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/AccurateMassSearchEngine.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/AhoCorasickAmbiguous.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/AScore.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/BasicProteinInferenceAlgorithm.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/BayesianProteinInferenceAlgorithm.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithm.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmAverage.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmBest.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmIdentity.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmPEPIons.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmPEPMatrix.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmRanks.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmSimilarity.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/ConsensusIDAlgorithmWorst.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/ConsensusMapMergerAlgorithm.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/FalseDiscoveryRate.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/FIAMSDataProcessor.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/FIAMSScheduler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/HiddenMarkovModel.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/IDBoostGraph.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/IDDecoyProbability.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/IDConflictResolverAlgorithm.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/IDMapper.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/IDMergerAlgorithm.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/IDRipper.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/IDScoreGetterSetter.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/IDScoreSwitcherAlgorithm.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/MessagePasserFactory.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/MetaboliteSpectralMatching.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/PeptideProteinResolution.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/PrecursorPurity.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/ProtonDistributionModel.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/PeptideIndexing.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/PercolatorFeatureSetHelper.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/SimpleSearchEngineAlgorithm.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/SiriusAdapterAlgorithm.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/ID/SiriusMSConverter.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/DENOVO/DeNovoIonScoring.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/DENOVO/DeNovoAlgorithm.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/DENOVO/DeNovoPostScoring.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/DENOVO/DeNovoIdentification.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationBase.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/DENOVO/CompNovoIdentification.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringCID.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/DENOVO/CompNovoIdentificationCID.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoringBase.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/DENOVO/CompNovoIonScoring.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/BaseGroupFinder.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/BaseSuperimposer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmThreshold.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmMedian.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmQuantile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/FeatureDistance.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithm.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmLabeled.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmKD.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmQT.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/FeatureGroupingAlgorithmUnlabeled.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/FeatureMapping.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/LabeledPairFinder.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmIdentification.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmKD.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmPoseClustering.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmSpectrumAlignment.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmTreeGuided.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithm.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithmPrecision.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithmRecall.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentTransformer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/PoseClusteringAffineSuperimposer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/PoseClusteringShiftSuperimposer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/QTClusterFinder.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/SimplePairFinder.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/StablePairFinder.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/TransformationDescription.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/TransformationModel.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/TransformationModelBSpline.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/TransformationModelLinear.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/TransformationModelLowess.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/MAPMATCHING/TransformationModelInterpolated.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/QUANTITATION/IsobaricChannelExtractor.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/QUANTITATION/IsobaricIsotopeCorrector.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/QUANTITATION/IsobaricNormalizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantifier.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantifierStatistics.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/QUANTITATION/IsobaricQuantitationMethod.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/QUANTITATION/ItraqConstants.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/QUANTITATION/ItraqEightPlexQuantitationMethod.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/QUANTITATION/ItraqFourPlexQuantitationMethod.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureMaps.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/QUANTITATION/KDTreeFeatureNode.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/QUANTITATION/PeptideAndProteinQuant.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/QUANTITATION/ProteinInference.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/QUANTITATION/ProteinResolver.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/QUANTITATION/QuantitativeExperimentalDesign.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/QUANTITATION/TMTElevenPlexQuantitationMethod.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/QUANTITATION/TMTSixteenPlexQuantitationMethod.h -- Installing: 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/build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/RNPXL/RNPxlReport.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/XLMS/OpenPepXLAlgorithm.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/XLMS/OpenPepXLLFAlgorithm.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/XLMS/OPXLDataStructs.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/XLMS/OPXLHelper.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/XLMS/OPXLSpectrumProcessingAlgorithms.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/XLMS/XFDRAlgorithm.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/XLMS/XQuestScores.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/COMPARISON/CLUSTERING/AverageLinkage.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/COMPARISON/CLUSTERING/ClusterAnalyzer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/COMPARISON/CLUSTERING/ClusterFunctor.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/COMPARISON/CLUSTERING/ClusterHierarchical.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/COMPARISON/CLUSTERING/ClusteringGrid.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/COMPARISON/CLUSTERING/CompleteLinkage.h -- Installing: 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/build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FILTERING/SMOOTHING/LowessSmoothing.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FILTERING/SMOOTHING/SavitzkyGolayFilter.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FILTERING/TRANSFORMERS/BernNorm.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FILTERING/TRANSFORMERS/ComplementFilter.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FILTERING/TRANSFORMERS/ComplementMarker.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FILTERING/TRANSFORMERS/FilterFunctor.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/FILTERING/TRANSFORMERS/GoodDiffFilter.h -- Installing: 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/build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/BiGaussModel.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EGHTraceFitter.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ElutionModelFitter.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgFitter1D.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgModel.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/EmgScoring.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeFitter1D.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ExtendedIsotopeModel.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinder.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithm.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmIsotopeWavelet.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmMRM.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPicked.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPickedHelperStructs.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderIdentificationAlgorithm.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderMultiplexAlgorithm.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderDefs.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/Fitter1D.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussFitter1D.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussModel.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/GaussTraceFitter.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/InterpolationModel.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeFitter1D.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeModel.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeWavelet.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeWaveletConstants.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/IsotopeWaveletTransform.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MaxLikeliFitter1D.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ModelDescription.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexClustering.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexDeltaMasses.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexDeltaMassesGenerator.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredMSExperiment.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteredPeak.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexFiltering.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringCentroided.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringProfile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexIsotopicPeakPattern.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexSatelliteCentroided.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexSatelliteProfile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/PeakWidthEstimator.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/ProductModel.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SeedListGenerator.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransform.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/RAW2PEAK/ContinuousWaveletTransformNumIntegration.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/RAW2PEAK/OptimizePeakDeconvolution.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/RAW2PEAK/OptimizePick.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerCWT.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerIterative.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerMaxima.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerSH.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakShape.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/RAW2PEAK/TwoDOptimization.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/SIMULATION/DetectabilitySimulation.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/SIMULATION/DigestSimulation.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/SIMULATION/EGHModel.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/SIMULATION/EGHFitter1D.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/SIMULATION/IonizationSimulation.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/SIMULATION/MSSim.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/SIMULATION/RTSimulation.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/SIMULATION/RawMSSignalSimulation.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/SIMULATION/RawTandemMSSignalSimulation.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/SIMULATION/SimTypes.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/SIMULATION/LABELING/BaseLabeler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/SIMULATION/LABELING/BaseLabeler_impl.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/SIMULATION/LABELING/ITRAQLabeler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/SIMULATION/LABELING/LabelFreeLabeler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/SIMULATION/LABELING/O18Labeler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/SIMULATION/LABELING/SILACLabeler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/SIMULATION/LABELING/ICPLLabeler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/QC/Contaminants.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/QC/FragmentMassError.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/QC/FWHM.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/QC/MissedCleavages.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/QC/Ms2IdentificationRate.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/QC/Ms2SpectrumStats.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/QC/MzCalibration.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/QC/PeptideMass.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/QC/QCBase.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/QC/RTAlignment.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/QC/DBSuitability.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/QC/TIC.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/ChromatogramExtractor.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/ChromatogramExtractorAlgorithm.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/ConfidenceScoring.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/DIAHelper.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/DIAPrescoring.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/DIAScoring.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/IonMobilityScoring.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/MasstraceCorrelator.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/MRMAssay.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/MRMDecoy.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFilter.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureFinderScoring.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/MRMFeaturePicker.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureQC.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/MRMBatchFeatureSelector.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/MRMFeatureSelector.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/MRMIonSeries.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/MRMRTNormalizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/MRMTransitionGroupPicker.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/OpenSwathHelper.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/OpenSwathScores.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/OpenSwathScoring.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/OpenSwathTSVWriter.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/OpenSwathOSWWriter.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/OpenSwathWorkflow.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/PeakIntegrator.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/PeakPickerMRM.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/SONARScoring.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/SwathMapMassCorrection.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/SwathWindowLoader.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/SwathQC.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/SpectrumAddition.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/TargetedSpectraExtractor.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/TransitionTSVFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/TransitionPQPFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/DataAccessHelper.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/MRMFeatureAccessOpenMS.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SimpleOpenMSSpectraAccessFactory.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMS.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSCached.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessOpenMSInMemory.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessSqMass.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessTransforming.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/ANALYSIS/OPENSWATH/DATAACCESS/SpectrumAccessQuadMZTransforming.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/APPLICATIONS/ConsoleUtils.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/APPLICATIONS/INIUpdater.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/APPLICATIONS/MapAlignerBase.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/APPLICATIONS/OpenSwathBase.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/APPLICATIONS/ParameterInformation.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/APPLICATIONS/ToolHandler.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/APPLICATIONS/TOPPBase.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/build_config.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/config.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms/openms_package_version.h -- Installing: 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/build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/openms/SCHEMAS/mzQuantML_1_0_0-rc2.xsd -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/openms/SCHEMAS/TraML1.0.0.xsd -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/openms/SCHEMAS/separation_technique_1.0.xsd -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/openms/SCHEMAS/Param_1_3.xsd -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/openms/SCHEMAS/pepXML_v114.xsd -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/openms/SCHEMAS/FeatureXML_1_5.xsd -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/openms/SCHEMAS/FeatureXML_1_6.xsd -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/openms/SCHEMAS/FuGElightv1.0.0.xsd -- Installing: 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/build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/openms/MAPPING/mzIdentML-mapping.xml -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/openms/IDPool -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/openms/IDPool/IDPool.txt -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/openms/IDPool/README -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/lib/libSuperHirn.so.2.6.0 -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/lib/x86_64-linux-gnu/libSuperHirn.so.2.6.0 -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/lib/x86_64-linux-gnu/libSuperHirn.so -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmSH.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmSHCtrl.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/BackgroundControl.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/BackgroundIntensityBin.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/CentroidData.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/CentroidPeak.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/ClusteredMS2ConsensusSpectrum.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/Deisotoper.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/FTPeakDetectController.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/IsotopicDist.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/LCMSCData.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/LCMS.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SuperHirnParameters.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/LCElutionPeak.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS1FeatureMerger.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS2ConsensusSpectrum.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS2Fragment.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS2Feature.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/ProcessData.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/RawData.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/ConsensusIsotopePattern.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SHFeature.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/FeatureLCProfile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MS2Info.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/MSPeak.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SuperHirnUtil.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/superhirn/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/SuperHirnConfig.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/lib/libOpenMS_GUI.so.2.6.0 -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/lib/x86_64-linux-gnu/libOpenMS_GUI.so.2.6.0 -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/lib/x86_64-linux-gnu/libOpenMS_GUI.so -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/ANNOTATION/Annotation1DDistanceItem.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/ANNOTATION/Annotation1DItem.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/ANNOTATION/Annotation1DPeakItem.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/ANNOTATION/Annotation1DCaret.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/ANNOTATION/Annotation1DTextItem.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/ANNOTATION/Annotations1DContainer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/APPLICATIONS/INIFileEditorWindow.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/APPLICATIONS/SwathWizardBase.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/APPLICATIONS/TOPPViewBase.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/APPLICATIONS/TOPPASBase.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/MISC/ExternalProcessMBox.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/MISC/GUIHelpers.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/APPLICATIONS/MISC/QApplicationTOPP.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/AxisTickCalculator.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/AxisPainter.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/AxisWidget.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/ColorSelector.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/EnhancedTabBar.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/EnhancedTabBarWidgetInterface.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/EnhancedWorkspace.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/FilterList.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/GUIProgressLoggerImpl.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/HistogramWidget.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/InputFile.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/InputFileList.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/LayerData.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/ListEditor.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/MetaDataBrowser.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/MultiGradient.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/MultiGradientSelector.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/OutputDirectory.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/ParamEditor.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/SpectraViewWidget.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/SpectraIdentificationViewWidget.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/Spectrum1DCanvas.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/Spectrum1DWidget.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/Spectrum2DCanvas.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/Spectrum2DWidget.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/Spectrum3DCanvas.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/Spectrum3DOpenGLCanvas.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/Spectrum3DWidget.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/SpectrumCanvas.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/SpectrumWidget.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/SwathLibraryStats.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/TOPPASEdge.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/TOPPASInputFileListVertex.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/TOPPASLogWindow.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/TOPPASMergerVertex.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/TOPPASOutputFileListVertex.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/TOPPASResource.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/TOPPASResources.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/TOPPASScene.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/TOPPASSplitterVertex.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/TOPPASTabBar.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/TOPPASToolVertex.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/TOPPASTreeView.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/TOPPASVertex.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/TOPPASWidget.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/TOPPViewIdentificationViewBehavior.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/TOPPViewSpectraViewBehavior.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/DIALOGS/DataFilterDialog.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/DIALOGS/FeatureEditDialog.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/DIALOGS/HistogramDialog.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/DIALOGS/LayerStatisticsDialog.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/DIALOGS/PythonModuleRequirement.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/DIALOGS/PythonSelector.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/DIALOGS/SaveImageDialog.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/DIALOGS/Spectrum1DGoToDialog.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/DIALOGS/Spectrum1DPrefDialog.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/DIALOGS/Spectrum2DGoToDialog.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/DIALOGS/Spectrum2DPrefDialog.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/DIALOGS/Spectrum3DPrefDialog.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/DIALOGS/SpectrumAlignmentDialog.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/DIALOGS/SwathTabWidget.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/DIALOGS/TOPPASIOMappingDialog.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/DIALOGS/TOPPASInputFileDialog.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/DIALOGS/TOPPASInputFilesDialog.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/DIALOGS/TOPPASOutputFilesDialog.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/DIALOGS/TOPPASToolConfigDialog.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/DIALOGS/TOPPASVertexNameDialog.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/DIALOGS/TOPPViewOpenDialog.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/DIALOGS/TOPPViewPrefDialog.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/DIALOGS/TheoreticalSpectrumGenerationDialog.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/DIALOGS/ToolsDialog.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/AcquisitionInfoVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/AcquisitionVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/BaseVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/BaseVisualizerGUI.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/ContactPersonVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/DataProcessingVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/DigestionVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/DocumentIdentifierVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/ExperimentalSettingsVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/GradientVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/HPLCVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/InstrumentSettingsVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/InstrumentVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/IonDetectorVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/IonSourceVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/MassAnalyzerVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/MetaInfoDescriptionVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/MetaInfoVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/ModificationVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/PeptideHitVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/PeptideIdentificationVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/PrecursorVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/ProteinHitVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/ProteinIdentificationVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/SampleVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/ScanWindowVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/SoftwareVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/SourceFileVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/SpectrumSettingsVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/TaggingVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/VISUAL/VISUALIZER/ProductVisualizer.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/include/OpenMS/OpenMS/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu/src/openms_gui/VISUAL/OpenMS_GUIConfig.h -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/INIFileEditor -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/SwathWizard -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/TOPPAS -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/TOPPView -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/BaselineFilter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/CometAdapter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/CompNovo -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/CompNovoCID -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/ConsensusID -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/ConsensusMapNormalizer -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/CruxAdapter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/DatabaseSuitability -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/Decharger -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/DTAExtractor -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/EICExtractor -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/ExternalCalibration -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/FalseDiscoveryRate -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/FeatureFinderCentroided -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/FeatureFinderIdentification -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/FeatureFinderIsotopeWavelet -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/FeatureFinderMetabo -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/FeatureFinderMRM -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/FeatureFinderMultiplex -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/FeatureLinkerLabeled -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/FeatureLinkerUnlabeled -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/FeatureLinkerUnlabeledKD -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/FeatureLinkerUnlabeledQT -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/FidoAdapter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/FileConverter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/FileFilter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/FileInfo -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/FileMerger -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/GenericWrapper -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/GNPSExport -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/HighResPrecursorMassCorrector -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/IDConflictResolver -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/IDFileConverter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/IDFilter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/IDMapper -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/IDMerger -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/IDPosteriorErrorProbability -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/IDRipper -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/IDRTCalibration -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/InclusionExclusionListCreator -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/InspectAdapter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/InternalCalibration -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/IsobaricAnalyzer -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/LuciphorAdapter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MapAlignerIdentification -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MapAlignerPoseClustering -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MapAlignerSpectrum -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MapAlignerTreeGuided -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MapNormalizer -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MapRTTransformer -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MapStatistics -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MaRaClusterAdapter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MascotAdapter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MascotAdapterOnline -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MassTraceExtractor -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MRMMapper -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MSGFPlusAdapter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MyriMatchAdapter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MzTabExporter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/NoiseFilterGaussian -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/NoiseFilterSGolay -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/OMSSAAdapter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/OpenPepXL -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/OpenPepXLLF -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/OpenSwathAnalyzer -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/OpenSwathAssayGenerator -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/OpenSwathChromatogramExtractor -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/OpenSwathConfidenceScoring -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/OpenSwathDecoyGenerator -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/OpenSwathFeatureXMLToTSV -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/OpenSwathRTNormalizer -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/PeakPickerHiRes -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/PeakPickerWavelet -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/PepNovoAdapter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/PeptideIndexer -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/PercolatorAdapter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/PhosphoScoring -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/PrecursorIonSelector -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/PrecursorMassCorrector -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/ProteinInference -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/ProteinQuantifier -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/ProteinResolver -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/PTModel -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/PTPredict -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/QualityControl -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/RTModel -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/RTPredict -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/SeedListGenerator -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/SpecLibSearcher -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/SpectraFilterBernNorm -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/SpectraFilterMarkerMower -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/SpectraFilterNLargest -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/SpectraFilterNormalizer -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/SpectraFilterParentPeakMower -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/SpectraFilterScaler -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/SpectraFilterSqrtMower -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/SpectraFilterThresholdMower -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/SpectraFilterWindowMower -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/SpectraMerger -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/TextExporter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/TOFCalibration -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/XFDR -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/XTandemAdapter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/ExecutePipeline -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/Resampler -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/AccurateMassSearch -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/AssayGeneratorMetabo -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/ClusterMassTraces -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/ClusterMassTracesByPrecursor -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/CVInspector -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/DatabaseFilter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/DecoyDatabase -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/DeMeanderize -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/Digestor -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/DigestorMotif -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/Epifany -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/ERPairFinder -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/FeatureFinderMetaboIdent -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/FeatureFinderSuperHirn -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/FFEval -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/FuzzyDiff -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/IDDecoyProbability -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/IDExtractor -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/IDMassAccuracy -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/IDScoreSwitcher -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/IDSplitter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/LabeledEval -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MassCalculator -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MetaboliteAdductDecharger -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MetaboliteSpectralMatcher -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MetaProSIP -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MRMPairFinder -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MSFraggerAdapter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MSSimulator -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MSstatsConverter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MultiplexResolver -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MzMLSplitter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/NovorAdapter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/NucleicAcidSearchEngine -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/OpenMSInfo -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/PeakPickerIterative -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/PSMFeatureExtractor -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/QCCalculator -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/QCEmbedder -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/QCExporter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/QCExtractor -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/QCImporter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/QCMerger -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/QCShrinker -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/ProteomicsLFQ -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/RNADigestor -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/RNAMassCalculator -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/RNPxlXICFilter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/RNPxlSearch -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/RTEvaluation -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/SemanticValidator -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/SequenceCoverageCalculator -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/SimpleSearchEngine -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/SiriusAdapter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/SpecLibCreator -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/SpectraSTSearchAdapter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/StaticModification -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/SvmTheoreticalSpectrumGeneratorTrainer -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/TICCalculator -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/TransformationEvaluation -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/XMLValidator -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/TargetedFileConverter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/OpenSwathDIAPreScoring -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/OpenSwathMzMLFileCacher -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/OpenSwathWorkflow -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/OpenSwathFileSplitter -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/OpenSwathRewriteToFeatureXML -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/MRMTransitionGroupPicker -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/ImageCreator -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/bin/INIUpdater -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Chemistry.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/folderclosedd.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/Quickstart.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureFinderCentroided_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_StaticModification.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathFeatureXMLToTSV_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/GenericWrapper_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FalseDiscoveryRate_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/NucleicAcidSearchEngine_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/tab_sd.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ExternalCalibration_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/Epifany_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/namespacemembers_func.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathAssayGenerator_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/install_win.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView_tools_baseline.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__SpectraPreprocessers.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_AccurateMassSearch.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureFinderSuperHirn_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureFinderMultiplex_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_FeatureFinderSuperHirn.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/globals_vars.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathWorkflow_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QCExtractor_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_PSMFeatureExtractor.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView_tools_noisefilter_filtered.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ImageCreator_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/Spectrum2DWidget.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_LuciphorAdapter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/common-cmake-parameters_8doxygen.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__FeatureFinder_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_TOPPAS.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/form_5_dark.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureFinderMRM_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_OpenPepXLLF.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__TOPPView__elements_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ProteinResolver_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/tab_hd.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SequenceCoverageCalculator_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_FeatureLinkerLabeled.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDPosteriorErrorProbability_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MapNormalizer_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/classTOPPGNPSExport__coll__graph.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/GenericWrapper_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/install_linux_bin.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureLinkerBase_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_TextExporter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QApplicationTOPP_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDMerger_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/CometAdapter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FileConverter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/INIFileEditor.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_SpecLibSearcher.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/NoiseFilterGaussian_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPAS_example_profile_data_processing.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/dir_04f2ecc425faf0d475a3caf484e551f3_dep_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/pages.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/DTAExtractor_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/dot_inline_dotgraph_1.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/install-win-bin_8doxygen.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/LuciphorAdapter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView_baseline_reduction.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/dir_c9f25c269f6c79194ec5671a83695c64.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView_1D.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/DTAExtractor_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureFinderMetabo_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Simulation.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_MaRaClusterAdapter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_MRMPairFinder.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDFileConverter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/CVInspector_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/InternalCalibration_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ExecutePipeline_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PepNovoAdapter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_OpenSwathFeatureXMLToTSV.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_CompNovo.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FileFilter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_QCExporter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_InternalCalibration.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/CVInspector_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_SpectraSTSearchAdapter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_DeMeanderize.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_SpecLibCreator.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/dir_c9f25c269f6c79194ec5671a83695c64_dep.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ConsensusID_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_AssayGeneratorMetabo.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/EICExtractor_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_IDScoreSwitcher.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/GNPSExport_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FileInfo_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDFileConverter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView_statistics.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FileInfo_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SimpleSearchEngine_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_FeatureLinkerUnlabeledKD.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Analysis.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ConsensusID_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureLinkerLabeled_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SILACAnalyzer_algorithm.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDDecoyProbability_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_SwathWizard.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/closed.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathAssayGenerator_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__SpectraFilter.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_RNPxlXICFilter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/CometAdapter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/InclusionExclusionListCreator_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterSqrtMower_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/DecoyDatabase_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureLinkerBase_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/Terms_Spectrum.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FuzzyDiff_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/doc.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDMassAccuracy_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QCCalculator_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FFEval_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterMarkerMower_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/nav_h.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/namespacemembers_eval.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/StaticModification_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SvmTheoreticalSpectrumGeneratorTrainer_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/install_win_bin.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/tutorial.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/folderopen.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDSplitter_8cpp__incl.svg -- Installing: 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/build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_OpenSwathAssayGenerator.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QCShrinker_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/DatabaseSuitability_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/style_ini.css -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QCMerger_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/RTModel_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/InspectAdapter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/form_0_dark.png -- Installing: 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Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_example_convert.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/LuciphorAdapter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/tab_a.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/dir_c39c27c466e6a9c3e8f373e7a3dd7828_dep_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PSMFeatureExtractor_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/dir_04f2ecc425faf0d475a3caf484e551f3_dep.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_ProteinResolver.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/NoiseFilterSGolay_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/form_6_dark.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/XFDR_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpecLibSearcher_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_example_calibration.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__SpectraFilter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PhosphoScoring_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/install_mac.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MapStatistics_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenMSInfo_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/Changelog_8doxygen.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureFinderSuperHirn_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_CometAdapter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPAS_parameters.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/HighResPrecursorMassCorrector_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OMSSAAdapter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/namespaceOpenMS.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_TOFCalibration.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PeakPickerHiRes_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TargetedFileConverter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureLinkerBase_8cpp_source.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/inherit_graph_0.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/RNPxlXICFilter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_INIFileEditor.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SemanticValidator_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/menudata.js -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPAS_general.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_FeatureLinkerUnlabeledQT.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MetaboliteSpectralMatcher_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDExtractor_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/LabeledEval_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MapRTTransformer_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__PeakMarker.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/Resampler_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_FuzzyDiff.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureLinkerUnlabeledKD_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDExtractor_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterSqrtMower_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureFinderIsotopeWavelet_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SvmTheoreticalSpectrumGeneratorTrainer_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MapAlignerIdentification_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QCExporter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__FeatureGrouping.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/RNAMassCalculator_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/form_4.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenPepXLLF_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Metadata.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_SpectraFilterThresholdMower.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_ProteinInference.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ProteinQuantifier_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPAS_BSA_results_3d.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/tab_ad.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/dir_ebd3f5f0482b02ff4c3b89293f04ed6c_dep.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathMzMLFileCacher_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QCEmbedder_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_ProteinQuantifier.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PSMFeatureExtractor_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/open.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/CompNovoCID_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/classTOPPBase__inherit__graph.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/classNucleicAcidSearchEngine.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_IDFilter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/InclusionExclusionListCreator_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_DigestorMotif.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/INIUpdater_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathWorkflow_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/BaselineFilter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDRTCalibration_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/CVInspector_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QCMerger_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/Digestor_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/XMLValidator_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__MathFunctionsStatistics.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView_hotkeys.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureFinderSuperHirn_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathAnalyzer_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__FileIO.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_PrecursorIonSelector.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/Decharger_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PeptideIndexer_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDConflictResolver_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_QCCalculator.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QCMerger_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SwathWizardBase_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MzMLSplitter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_OpenSwathDIAPreScoring.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/inherit_graph_2.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Filtering_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/form_8_dark.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_Resampler.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView_tools_baseline_filtered.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathFileSplitter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/DecoyDatabase_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_NovorAdapter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/RTModel_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MapAlignerPoseClustering_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__FeatureFinder.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_MapAlignerIdentification.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_alignment.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/DigestorMotif_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDConflictResolver_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PeakPickerHiRes_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__SpectrumWidgets_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/install-macs-bin_8doxygen.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/folderclosed.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_PhosphoScoring.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Analysis_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDMassAccuracy_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDRipper_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_SpectraFilterParentPeakMower.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView_peakpicking.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_XTandemAdapter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PyOpenMS_8doxygen.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__MathFunctionsStatistics_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/form_9.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathFileSplitter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_MapAlignerPoseClustering.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MapAlignerSpectrum_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPAS_BSA_Quantitation.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FidoAdapter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ERPairFinder_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterWindowMower_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_FeatureLinkerUnlabeled.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MzTabExporter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP__Tutorial__html_8doxygen.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/form_3_dark.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Math.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/EICExtractor_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MRMMapper_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/INIFileEditor_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/inherit_graph_1.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/tab_h.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IsobaricAnalyzer_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_MRMTransitionGroupPicker.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_tutorial.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MultiplexResolver_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/XMLValidator_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterScaler_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView_analysis.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QualityControl_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/classNucleicAcidSearchEngine-members.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_documentation.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/plusd.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterWindowMower_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/docd.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_QCMerger.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/DatabaseFilter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ImageCreator_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/NoiseFilterGaussian_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPAS_example_merger.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__SpectrumWidgets.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/structNucleicAcidSearchEngine_1_1PrecursorInfo-members.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/RNAMassCalculator_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/form_0.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/DigestorMotif_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MascotAdapterOnline_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenMSInfo_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/form_7.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/Digestor_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_NucleicAcidSearchEngine.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_MapAlignerSpectrum.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/globals_defs.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenPepXL_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/CompNovoCID_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/DeMeanderize_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__TOPPView__elements.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TICCalculator_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathMzMLFileCacher_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MetaProSIP_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDRipper_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/classNucleicAcidSearchEngine__inherit__graph_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/install-linux_8doxygen.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_MassTraceExtractor.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView_smoothing.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MascotAdapter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PSMFeatureExtractor_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MSFraggerAdapter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ChangeLog.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ProteomicsLFQ_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__MapAlignment_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MascotAdapterOnline_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__MathFunctionsMisc_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/dynsections.js -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/DigestorMotif_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/tabs.css -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_SpectraFilterWindowMower.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_RNAMassCalculator.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterNormalizer_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/NovorAdapter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PepNovoAdapter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_MassCalculator.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/LuciphorAdapter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Visual.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/form_2_dark.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_OpenSwathRewriteToFeatureXML.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/namespaces.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDMassAccuracy_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/nav_g.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FileConverter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenMSInfo_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDScoreSwitcher_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Dialogs_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_QCEmbedder.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__FeatureGrouping_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/classTOPPBase__inherit__graph_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_Decharger.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureLinkerBase_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView_introduction.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterThresholdMower_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MapAlignerIdentification_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QCExporter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/todo.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ImageCreator_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/structNucleicAcidSearchEngine_1_1PrecursorInfo.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__PeakMarker.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_PepNovoAdapter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/nav_fd.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterWindowMower_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenPepXLLF_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QuickStart_8doxygen.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__SpectraFilter_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_RTPredict.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_OpenSwathChromatogramExtractor.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FileMerger_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/Decharger_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/dir_ebd3f5f0482b02ff4c3b89293f04ed6c.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_MascotAdapterOnline.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/InspectAdapter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ProteomicsLFQ_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Analysis__ID.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/install-macs_8doxygen.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDMapper_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_ERPairFinder.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__TOPPAS__elements.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__SpectraClustering.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FidoAdapter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraMerger_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/dir_e68e8157741866f444e17edd764ebbae.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraSTSearchAdapter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ClusterMassTraces_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_QCExtractor.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/dir_1358a02fb1ca1b471aa8f78386a5e6ad_dep.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/InclusionExclusionListCreator_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureFinderMetaboIdent_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureLinkerUnlabeledKD_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/bug.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ERPairFinder_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_TOPPView.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_CompNovoCID.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/RNAMassCalculator_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDExtractor_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureLinkerLabeled_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/topics.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__SignalProcessing_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/NoiseFilterGaussian_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathConfidenceScoring_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MapNormalizer_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/form_9_dark.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/RNPxlSearch_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathDIAPreScoring_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/annotated.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_MzTabExporter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__MathFunctionsMisc.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MapRTTransformer_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PrecursorIonSelector_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/formula.repository -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_8doxygen.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FFEval_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/CruxAdapter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Concept.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_DTAExtractor.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_OpenSwathDecoyGenerator.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/classTOPPGNPSExport__coll__graph_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/folderopend.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PercolatorAdapter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_IDMassAccuracy.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MyriMatchAdapter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PeakPickerIterative_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QCImporter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/structNucleicAcidSearchEngine_1_1AnnotatedHit__coll__graph.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/install-win_8doxygen.html -- Installing: 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/build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP__advanced_8doxygen.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MetaProSIP_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/INIUpdater_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ProteomicsLFQ_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QualityControl_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_LabeledEval.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MetaboliteAdductDecharger_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/classTOPPBase.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Filtering.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenPepXLLF_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__TOPPAS__elements.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/RNPxlSearch_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/RTPredict_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_Epifany.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureFinderIsotopeWavelet_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/tab_s.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/minus.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ConsensusMapNormalizer_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_NoiseFilterSGolay.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_OpenSwathMzMLFileCacher.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/classTOPPGNPSExport-members.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OMSSAAdapter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MzMLSplitter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PTModel_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathDecoyGenerator_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PeakPickerWavelet_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/RTPredict_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_example_qualitycontrol.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__FeatureFinder.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/Digestor_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SimpleSearchEngine_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/classNucleicAcidSearchEngine__inherit__graph.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/LabeledEval_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_general.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PTModel_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/functions_type.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/RNADigestor_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/search -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/search/enums_0.js -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/search/all_c.js -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/search/all_17.js -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/search/mag_seld.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/search/variables_3.js -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/search/all_2.js -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/search/all_8.js -- Installing: 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/build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/search/groups_3.js -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/search/groups_a.js -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/search/classes_2.js -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/search/pages_13.js -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/search/variables_9.js -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/search/functions_a.js -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/search/groups_8.js -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/search/search.js -- Installing: 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Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenMS_overview.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/StaticModification_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterScaler_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraSTSearchAdapter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Format.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathDIAPreScoring_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterMarkerMower_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PrecursorIonSelector_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_IDConflictResolver.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPAS_Ecoli_Identification.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/splitbard.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PercolatorAdapter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/structNucleicAcidSearchEngine_1_1PrecursorInfo__coll__graph_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OMSSAAdapter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/Resampler_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__FeatureGrouping.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_IDDecoyProbability.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MapStatistics_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ExternalCalibration_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDFilter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathChromatogramExtractor_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/dir_a5a355bc2fffce99f4d06ccbc3519db8.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__MathFunctionsStatistics.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureLinkerUnlabeled_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_PercolatorAdapter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/namespacemembers.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathFeatureXMLToTSV_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_OpenSwathWorkflow.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/InspectAdapter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_InspectAdapter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_example_featuredetection.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MSSimulator_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_PTModel.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathConfidenceScoring_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureFinderMetaboIdent_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ProteinQuantifier_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/LabeledEval_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/files.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_RTEvaluation.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView_tools_noisefilter.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenPepXL_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_PeakPickerHiRes.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureFinderMetabo_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/inherit_graph_3.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_SpectraMerger.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureFinderMultiplex_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__SignalProcessing.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPAS_interface.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_SiriusAdapter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/classTOPPGNPSExport__inherit__graph.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPAS_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/CompNovo_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_DatabaseSuitability.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_MzMLSplitter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_documentation.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDFilter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MultiplexResolver_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView_icons.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/Main_8doxygen.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_consensus_id.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TextExporter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/AccurateMassSearch_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/RNPxlSearch_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/sync_off.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/globals_type.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureFinderIdentification_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/structNucleicAcidSearchEngine_1_1AnnotatedHit__coll__graph_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/classNucleicAcidSearchEngine_1_1HasInvalidLength__coll__graph_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_PeakPickerWavelet.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MRMPairFinder_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MRMMapper_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraMerger_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_raw_data.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MetaProSIP_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/NoiseFilterSGolay_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/INIFileEditorWindow_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ERPairFinder_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterParentPeakMower_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_NoiseFilterGaussian.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_advanced.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/EICExtractor_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MSGFPlusAdapter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MassTraceExtractor_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/DeMeanderize_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/globals.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__SpectraPreprocessers.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_IsobaricAnalyzer.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPAS_edges.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/dir_c9f25c269f6c79194ec5671a83695c64_dep_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/minusd.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Filtering.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/AssayGeneratorMetabo_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QualityControl_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_FeatureFinderCentroided.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathChromatogramExtractor_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_example_ppp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_MapNormalizer.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/form_2.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView_tools.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpecLibCreator_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_SemanticValidator.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/XTandemAdapter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MassTraceExtractor_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ConsensusMapNormalizer_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Dialogs.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PTModel_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SeedListGenerator_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TextExporter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterParentPeakMower_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_HighResPrecursorMassCorrector.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_MetaProSIP.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/tab_b.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SemanticValidator_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDRTCalibration_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QCEmbedder_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MassCalculator_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SwathWizard_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MSstatsConverter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MzMLSplitter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ClusterMassTraces_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/INIUpdater_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/dir_c39c27c466e6a9c3e8f373e7a3dd7828.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QCShrinker_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_ClusterMassTraces.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_TransformationEvaluation.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_MSFraggerAdapter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Kernel.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_IDSplitter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FAQ_8doxygen.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MRMPairFinder_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QCShrinker_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Format.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenMS__Tutorial_8doxygen.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_IDMerger.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__SignalProcessing.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__PeakPicking_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__SpectraClustering_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_PTPredict.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_MapRTTransformer.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathRTNormalizer_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_QualityControl.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/XFDR_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/KnownDevBugs_8doxygen.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/INIFileEditor_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_qualitycontrol.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MapAlignerTreeGuided_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/bc_s.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QCExporter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/RTEvaluation_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__MathFunctionsMisc.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PrecursorMassCorrector_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureFinderMRM_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FalseDiscoveryRate_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SimpleSearchEngine_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TICCalculator_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MSGFPlusAdapter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPAS_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MSSimulator_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IsobaricAnalyzer_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_XMLValidator.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_IDPosteriorErrorProbability.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SvmTheoreticalSpectrumGeneratorTrainer_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_RNADigestor.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_FidoAdapter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView_tools_ff_centroided.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/pyOpenMS.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/Kernel_DataPoints.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_MSSimulator.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_FeatureLinkerBase.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_example_mapalignment.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpecLibCreator_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/install_mac_bin.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView_editing.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathRewriteToFeatureXML_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureFinderIdentification_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/AssayGeneratorMetabo_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__System.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_CVInspector.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_ProteomicsLFQ.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_SpectraFilterScaler.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_IDFileConverter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/dir_1358a02fb1ca1b471aa8f78386a5e6ad.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_MRMMapper.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/plus.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Analysis__ID.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PeakPickerIterative_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_SpectraFilterNormalizer.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IsobaricAnalyzer_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TransformationEvaluation_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/RTEvaluation_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MyriMatchAdapter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MRMPairFinder_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_PeptideIndexer.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__TOPPView__elements.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ProteinResolver_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureLinkerUnlabeled_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraSTSearchAdapter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDMapper_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Math_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/DecoyDatabase_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QCEmbedder_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__MapAlignment.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PeakPickerWavelet_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/functions_vars.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterNLargest_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP__concepts_8doxygen.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_ImageCreator.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/InternalCalibration_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SiriusAdapter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/StaticModification_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/INIFileEditorWindow_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/classNucleicAcidSearchEngine__coll__graph_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FileInfo_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_ConsensusMapNormalizer.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/namespacemembers_enum.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PepNovoAdapter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/HighResPrecursorMassCorrector_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MascotAdapter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SemanticValidator_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterParentPeakMower_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterSqrtMower_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureFinderMetabo_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__FileIO_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PeptideIndexer_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/install_linux.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_XFDR.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_PeakPickerIterative.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TransformationEvaluation_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_FeatureFinderIsotopeWavelet.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TargetedFileConverter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/BaselineFilter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ClusterMassTraces_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PeakPickerIterative_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Dialogs.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpecLibCreator_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathDecoyGenerator_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/doxygen.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MSstatsConverter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathMzMLFileCacher_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView_views.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/doxygen_2public_2TOPPAS_8doxygen.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpecLibSearcher_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenMS_75x55_transparent.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView_tools_menu.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SwathWizard_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/INIFileEditorWindow_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_ConsensusID.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__SpectraComparison.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/dir_04f2ecc425faf0d475a3caf484e551f3.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDSplitter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/DatabaseSuitability_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MapAlignerIdentification_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/hierarchy.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/nav_hd.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_OMSSAAdapter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPASBase_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TransformationEvaluation_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ProteinQuantifier_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDScoreSwitcher_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView__calling__topp_8doxygen.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDDecoyProbability_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TextExporter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ClusterMassTracesByPrecursor_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MassCalculator_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_IDMapper.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/RTEvaluation_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureFinderCentroided_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SequenceCoverageCalculator_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_MapStatistics.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDDecoyProbability_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/RTPredict_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_IDRTCalibration.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PTPredict_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_ExecutePipeline.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ConsensusMapNormalizer_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterScaler_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureLinkerUnlabeled_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterBernNorm_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/CruxAdapter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/RTModel_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/NucleicAcidSearchEngine_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SwathWizard_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ProteinInference_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Visual.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Datastructures.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MetaboliteAdductDecharger_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/DatabaseSuitability_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/nav_f.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/Spectrum3DWidget.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PTPredict_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_IDExtractor.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_SimpleSearchEngine.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MRMTransitionGroupPicker_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PeakPickerWavelet_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_FeatureFinderMultiplex.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MaRaClusterAdapter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDScoreSwitcher_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PrecursorIonSelector_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/Terms_Map.png -- Installing: 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/build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ExecutePipeline_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDRTCalibration_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDPosteriorErrorProbability_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MassCalculator_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOFCalibration_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/GNPSExport_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_FeatureFinderMetabo.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QCExtractor_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__PeakPicking.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_MascotAdapter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterNLargest_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SwathWizard.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_FeatureFinderMetaboIdent.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureFinderIdentification_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/Epifany_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Math.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/form_1.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Format_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureLinkerLabeled_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenPepXL_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QApplicationTOPP_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/index.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FAQ.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPAS_tutorial.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDFileConverter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/functions_func.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/RNADigestor_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_FileFilter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_Digestor.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_SpectraFilterBernNorm.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SwathWizardBase_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/known_dev_bugs.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ExternalCode_8doxygen.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MetaboliteSpectralMatcher_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_SpectraFilterMarkerMower.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDMerger_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PercolatorAdapter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/doxygen.css -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/jquery.js -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_SequenceCoverageCalculator.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/sync_on.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureLinkerUnlabeledQT_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QCImporter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_example_featuregrouping.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MassTraceExtractor_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureLinkerUnlabeledQT_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathAnalyzer_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_QCShrinker.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/HighResPrecursorMassCorrector_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/DatabaseFilter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/XFDR_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/NucleicAcidSearchEngine_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathRewriteToFeatureXML_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MapAlignerTreeGuided_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/favicon.ico -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QCCalculator_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QCImporter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__SpectrumWidgets.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/form_4_dark.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_TICCalculator.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/CompNovoCID_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/Decharger_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FuzzyDiff_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TargetedFileConverter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/XMLValidator_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_FileConverter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/DatabaseFilter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureFinderMultiplex_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/dir_ebd3f5f0482b02ff4c3b89293f04ed6c_dep_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_labeled_quant.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenMS__Tutorial__html_8doxygen.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/dir_1358a02fb1ca1b471aa8f78386a5e6ad_dep_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/RNPxlXICFilter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MascotAdapterOnline_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QApplicationTOPP_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/CompNovo_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_CruxAdapter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PeakPickerHiRes_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SwathWizardBase_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP__scripting_8doxygen.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDMerger_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SiriusAdapter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathRTNormalizer_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/RNADigestor_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MascotAdapter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MaRaClusterAdapter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_SpectraFilterNLargest.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/install-linux-bin_8doxygen.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SeedListGenerator_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/NoiseFilterSGolay_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_example_signalprocessing.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_SpectraFilterSqrtMower.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureLinkerUnlabeledQT_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOFCalibration_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureLinkerUnlabeledKD_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/NovorAdapter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FileFilter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView_parts.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathAssayGenerator_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PhosphoScoring_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PTPredict_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FileMerger_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SequenceCoverageCalculator_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__PeakPicking.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/classNucleicAcidSearchEngine__coll__graph.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/INIFileEditor_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpecLibSearcher_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PeptideIndexer_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_INIUpdater.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MultiplexResolver_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_DecoyDatabase.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_example_id.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MRMTransitionGroupPicker_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/graph_legend.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/AccurateMassSearch_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/classNucleicAcidSearchEngine_1_1HasInvalidLength.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/form_8.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/NovorAdapter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FileFilter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__PeakMarker_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_FalseDiscoveryRate.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathDecoyGenerator_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_example_handling.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDSplitter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_MetaboliteSpectralMatcher.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureLinkerBase_8cpp__dep__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/GenericWrapper_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MapAlignerTreeGuided_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_FileInfo.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_GNPSExport.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MzTabExporter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__MapAlignment.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/CruxAdapter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureFinderMetaboIdent_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/structNucleicAcidSearchEngine_1_1PrecursorInfo__coll__graph.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FidoAdapter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FileMerger_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/deprecated.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView_help.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDRipper_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_MSstatsConverter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MzTabExporter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_OpenPepXL.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/classTOPPGNPSExport.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MapAlignerSpectrum_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_FeatureFinderMRM.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/dir_caacfbd3799919944b233424e5b36887.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/splitbar.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_QCImporter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_OpenSwathFileSplitter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPAS_examples.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/graph_legend.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterThresholdMower_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/classNucleicAcidSearchEngine_1_1HasInvalidLength-members.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_MultiplexResolver.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/CompNovo_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MapNormalizer_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/improvement.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_ExternalCalibration.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathRTNormalizer_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ClusterMassTracesByPrecursor_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPAS_BSA_results_2d.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_FileMerger.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PhosphoScoring_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/globals_func.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_RNPxlSearch.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_ClusterMassTracesByPrecursor.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/Epifany_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/dot_inline_dotgraph_1_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MapAlignerPoseClustering_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_MSGFPlusAdapter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Analysis.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathConfidenceScoring_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDConflictResolver_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_TargetedFileConverter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/GNPSExport_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__Analysis__ID_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QCCalculator_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_8doxygen.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_RTModel.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FalseDiscoveryRate_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_EICExtractor.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/Modules_8doxygen.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MSSimulator_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_InclusionExclusionListCreator.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_MyriMatchAdapter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/tab_bd.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MSFraggerAdapter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_concepts.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/DeMeanderize_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PrecursorMassCorrector_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathChromatogramExtractor_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraMerger_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_MapAlignerTreeGuided.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__SpectraPreprocessers_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ProteinInference_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_MetaboliteAdductDecharger.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__SpectraClustering.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterThresholdMower_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ExecutePipeline_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/PrecursorMassCorrector_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FuzzyDiff_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/classNucleicAcidSearchEngine_1_1HasInvalidLength__coll__graph.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureFinderIsotopeWavelet_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MaRaClusterAdapter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/InternalCalibration_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_FeatureFinderIdentification.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathFileSplitter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/group__TOPPAS__elements_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MRMMapper_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_IDRipper.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/XTandemAdapter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_OpenSwathConfidenceScoring.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathFeatureXMLToTSV_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/svg.min.js -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/XTandemAdapter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/IDMapper_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_FFEval.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TICCalculator_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_OpenSwathAnalyzer.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/AccurateMassSearch_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FileConverter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterBernNorm_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterBernNorm_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/FeatureLinkerBase_8cpp__dep__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterNLargest_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPAS_run_options.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPAS_simple_example.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/form_7_dark.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_labelfree_quant.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathWorkflow_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPPView_tools_pp_picked.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MapAlignerPoseClustering_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MapRTTransformer_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterNormalizer_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/external_code.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/bc_sd.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ProteinResolver_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/UTILS_DatabaseFilter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenMS_tutorial.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/OpenSwathDIAPreScoring_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/form_3.png -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ConsensusID_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SiriusAdapter_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/inherits.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/ExternalCalibration_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_PrecursorMassCorrector.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/QCExtractor_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_GenericWrapper.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/TOPP_BaselineFilter.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/DTAExtractor_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MapStatistics_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SpectraFilterNormalizer_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MapAlignerSpectrum_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/SeedListGenerator_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/AssayGeneratorMetabo_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/BaselineFilter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/CometAdapter_8cpp__incl_org.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MRMTransitionGroupPicker_8cpp__incl.svg -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MSFraggerAdapter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/RNPxlXICFilter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/html/MSstatsConverter_8cpp.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/index.html -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/TOPP_tutorial.pdf -- Installing: /build/reproducible-path/openms-2.6.0+cleaned1/debian/tmp/usr/share/doc/openms/OpenMS_tutorial.pdf make[2]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/openms-2.6.0+cleaned1' dh_install -O--buildsystem=cmake -O--no-parallel install -m0755 -d debian/libopenms2.6.0//usr/lib/x86_64-linux-gnu cp --reflink=auto -a ./debian/tmp/usr/lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 ./debian/tmp/usr/lib/x86_64-linux-gnu/libOpenMS_GUI.so.2.6.0 ./debian/tmp/usr/lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 ./debian/tmp/usr/lib/x86_64-linux-gnu/libSuperHirn.so.2.6.0 debian/libopenms2.6.0//usr/lib/x86_64-linux-gnu/ install -m0755 -d debian/libopenms-dev//usr/share/openms cp --reflink=auto -a debian/tmp/usr/share/openms/cmake debian/libopenms-dev//usr/share/openms/ install -m0755 -d debian/libopenms-dev/usr/include cp --reflink=auto -a debian/tmp/usr/include/OpenMS/OpenMS debian/libopenms-dev/usr/include/ install -m0755 -d debian/topp//usr/bin cp --reflink=auto -a debian/tmp/usr/bin/AccurateMassSearch debian/tmp/usr/bin/AssayGeneratorMetabo debian/tmp/usr/bin/BaselineFilter debian/tmp/usr/bin/CVInspector debian/tmp/usr/bin/ClusterMassTraces debian/tmp/usr/bin/ClusterMassTracesByPrecursor debian/tmp/usr/bin/CometAdapter debian/tmp/usr/bin/CompNovo debian/tmp/usr/bin/CompNovoCID debian/tmp/usr/bin/ConsensusID debian/tmp/usr/bin/ConsensusMapNormalizer debian/tmp/usr/bin/CruxAdapter debian/tmp/usr/bin/DTAExtractor debian/tmp/usr/bin/DatabaseFilter debian/tmp/usr/bin/DatabaseSuitability debian/tmp/usr/bin/DeMeanderize debian/tmp/usr/bin/Decharger debian/tmp/usr/bin/DecoyDatabase debian/tmp/usr/bin/Digestor debian/tmp/usr/bin/DigestorMotif debian/tmp/usr/bin/EICExtractor debian/tmp/usr/bin/ERPairFinder debian/tmp/usr/bin/Epifany debian/tmp/usr/bin/ExecutePipeline debian/tmp/usr/bin/ExternalCalibration debian/tmp/usr/bin/FFEval debian/tmp/usr/bin/FalseDiscoveryRate debian/tmp/usr/bin/FeatureFinderCentroided debian/tmp/usr/bin/FeatureFinderIdentification debian/tmp/usr/bin/FeatureFinderIsotopeWavelet debian/tmp/usr/bin/FeatureFinderMRM debian/tmp/usr/bin/FeatureFinderMetabo debian/tmp/usr/bin/FeatureFinderMetaboIdent debian/tmp/usr/bin/FeatureFinderMultiplex debian/tmp/usr/bin/FeatureFinderSuperHirn debian/tmp/usr/bin/FeatureLinkerLabeled debian/tmp/usr/bin/FeatureLinkerUnlabeled debian/tmp/usr/bin/FeatureLinkerUnlabeledKD debian/tmp/usr/bin/FeatureLinkerUnlabeledQT debian/tmp/usr/bin/FidoAdapter debian/tmp/usr/bin/FileConverter debian/tmp/usr/bin/FileFilter debian/tmp/usr/bin/FileInfo debian/tmp/usr/bin/FileMerger debian/tmp/usr/bin/FuzzyDiff debian/tmp/usr/bin/GNPSExport debian/tmp/usr/bin/GenericWrapper debian/tmp/usr/bin/HighResPrecursorMassCorrector debian/tmp/usr/bin/IDConflictResolver debian/tmp/usr/bin/IDDecoyProbability debian/tmp/usr/bin/IDExtractor debian/tmp/usr/bin/IDFileConverter debian/tmp/usr/bin/IDFilter debian/tmp/usr/bin/IDMapper debian/tmp/usr/bin/IDMassAccuracy debian/tmp/usr/bin/IDMerger debian/tmp/usr/bin/IDPosteriorErrorProbability debian/tmp/usr/bin/IDRTCalibration debian/tmp/usr/bin/IDRipper debian/tmp/usr/bin/IDScoreSwitcher debian/tmp/usr/bin/IDSplitter debian/tmp/usr/bin/INIFileEditor debian/tmp/usr/bin/INIUpdater debian/tmp/usr/bin/ImageCreator debian/tmp/usr/bin/InclusionExclusionListCreator debian/tmp/usr/bin/InspectAdapter debian/tmp/usr/bin/InternalCalibration debian/tmp/usr/bin/IsobaricAnalyzer debian/tmp/usr/bin/LabeledEval debian/tmp/usr/bin/LuciphorAdapter debian/tmp/usr/bin/MRMMapper debian/tmp/usr/bin/MRMPairFinder debian/tmp/usr/bin/MRMTransitionGroupPicker debian/tmp/usr/bin/MSFraggerAdapter debian/tmp/usr/bin/MSGFPlusAdapter debian/tmp/usr/bin/MSSimulator debian/tmp/usr/bin/MSstatsConverter debian/tmp/usr/bin/MaRaClusterAdapter debian/tmp/usr/bin/MapAlignerIdentification debian/tmp/usr/bin/MapAlignerPoseClustering debian/tmp/usr/bin/MapAlignerSpectrum debian/tmp/usr/bin/MapAlignerTreeGuided debian/tmp/usr/bin/MapNormalizer debian/tmp/usr/bin/MapRTTransformer debian/tmp/usr/bin/MapStatistics debian/tmp/usr/bin/MascotAdapter debian/tmp/usr/bin/MascotAdapterOnline debian/tmp/usr/bin/MassCalculator debian/tmp/usr/bin/MassTraceExtractor debian/tmp/usr/bin/MetaProSIP debian/tmp/usr/bin/MetaboliteAdductDecharger debian/tmp/usr/bin/MetaboliteSpectralMatcher debian/tmp/usr/bin/MultiplexResolver debian/tmp/usr/bin/MyriMatchAdapter debian/tmp/usr/bin/MzMLSplitter debian/tmp/usr/bin/MzTabExporter debian/tmp/usr/bin/NoiseFilterGaussian debian/tmp/usr/bin/NoiseFilterSGolay debian/tmp/usr/bin/NovorAdapter debian/tmp/usr/bin/NucleicAcidSearchEngine debian/tmp/usr/bin/OMSSAAdapter debian/tmp/usr/bin/OpenMSInfo debian/tmp/usr/bin/OpenPepXL debian/tmp/usr/bin/OpenPepXLLF debian/tmp/usr/bin/OpenSwathAnalyzer debian/tmp/usr/bin/OpenSwathAssayGenerator debian/tmp/usr/bin/OpenSwathChromatogramExtractor debian/tmp/usr/bin/OpenSwathConfidenceScoring debian/tmp/usr/bin/OpenSwathDIAPreScoring debian/tmp/usr/bin/OpenSwathDecoyGenerator debian/tmp/usr/bin/OpenSwathFeatureXMLToTSV debian/tmp/usr/bin/OpenSwathFileSplitter debian/tmp/usr/bin/OpenSwathMzMLFileCacher debian/tmp/usr/bin/OpenSwathRTNormalizer debian/tmp/usr/bin/OpenSwathRewriteToFeatureXML debian/tmp/usr/bin/OpenSwathWorkflow debian/tmp/usr/bin/PSMFeatureExtractor debian/tmp/usr/bin/PTModel debian/tmp/usr/bin/PTPredict debian/tmp/usr/bin/PeakPickerHiRes debian/tmp/usr/bin/PeakPickerIterative debian/tmp/usr/bin/PeakPickerWavelet debian/tmp/usr/bin/PepNovoAdapter debian/tmp/usr/bin/PeptideIndexer debian/tmp/usr/bin/PercolatorAdapter debian/tmp/usr/bin/PhosphoScoring debian/tmp/usr/bin/PrecursorIonSelector debian/tmp/usr/bin/PrecursorMassCorrector debian/tmp/usr/bin/ProteinInference debian/tmp/usr/bin/ProteinQuantifier debian/tmp/usr/bin/ProteinResolver debian/tmp/usr/bin/ProteomicsLFQ debian/tmp/usr/bin/QCCalculator debian/tmp/usr/bin/QCEmbedder debian/tmp/usr/bin/QCExporter debian/tmp/usr/bin/QCExtractor debian/tmp/usr/bin/QCImporter debian/tmp/usr/bin/QCMerger debian/tmp/usr/bin/QCShrinker debian/tmp/usr/bin/QualityControl debian/tmp/usr/bin/RNADigestor debian/tmp/usr/bin/RNAMassCalculator debian/tmp/usr/bin/RNPxlSearch debian/tmp/usr/bin/RNPxlXICFilter debian/tmp/usr/bin/RTEvaluation debian/tmp/usr/bin/RTModel debian/tmp/usr/bin/RTPredict debian/tmp/usr/bin/Resampler debian/tmp/usr/bin/SeedListGenerator debian/tmp/usr/bin/SemanticValidator debian/tmp/usr/bin/SequenceCoverageCalculator debian/tmp/usr/bin/SimpleSearchEngine debian/tmp/usr/bin/SiriusAdapter debian/tmp/usr/bin/SpecLibCreator debian/tmp/usr/bin/SpecLibSearcher debian/tmp/usr/bin/SpectraFilterBernNorm debian/tmp/usr/bin/SpectraFilterMarkerMower debian/tmp/usr/bin/SpectraFilterNLargest debian/tmp/usr/bin/SpectraFilterNormalizer debian/tmp/usr/bin/SpectraFilterParentPeakMower debian/tmp/usr/bin/SpectraFilterScaler debian/tmp/usr/bin/SpectraFilterSqrtMower debian/tmp/usr/bin/SpectraFilterThresholdMower debian/tmp/usr/bin/SpectraFilterWindowMower debian/tmp/usr/bin/SpectraMerger debian/tmp/usr/bin/SpectraSTSearchAdapter debian/tmp/usr/bin/StaticModification debian/tmp/usr/bin/SvmTheoreticalSpectrumGeneratorTrainer debian/tmp/usr/bin/SwathWizard debian/tmp/usr/bin/TICCalculator debian/tmp/usr/bin/TOFCalibration debian/tmp/usr/bin/TOPPAS debian/tmp/usr/bin/TOPPView debian/tmp/usr/bin/TargetedFileConverter debian/tmp/usr/bin/TextExporter debian/tmp/usr/bin/TransformationEvaluation debian/tmp/usr/bin/XFDR debian/tmp/usr/bin/XMLValidator debian/tmp/usr/bin/XTandemAdapter debian/topp//usr/bin/ install -m0755 -d debian/topp/usr/share/applications cp --reflink=auto -a debian/tmp/usr/share/openms/DESKTOP/TOPPAS.desktop debian/tmp/usr/share/openms/DESKTOP/TOPPView.desktop debian/topp/usr/share/applications/ install -m0755 -d debian/topp/usr/share/metainfo cp --reflink=auto -a debian/tmp/usr/share/openms/DESKTOP/TOPPAS.appdata.xml debian/tmp/usr/share/openms/DESKTOP/TOPPView.appdata.xml debian/topp/usr/share/metainfo/ install -m0755 -d debian/topp/usr/share/pixmaps cp --reflink=auto -a ./debian/TOPPAS.xpm ./debian/TOPPView.xpm debian/topp/usr/share/pixmaps/ install -m0755 -d debian/openms-common//usr/share/openms cp --reflink=auto -a debian/tmp/usr/share/openms/CHEMISTRY debian/tmp/usr/share/openms/CV debian/tmp/usr/share/openms/DESKTOP debian/tmp/usr/share/openms/GUISTYLE debian/tmp/usr/share/openms/IDPool debian/tmp/usr/share/openms/MAPPING debian/tmp/usr/share/openms/PIP debian/tmp/usr/share/openms/SCHEMAS debian/tmp/usr/share/openms/SCRIPTS debian/tmp/usr/share/openms/TOOLS debian/tmp/usr/share/openms/XSL debian/openms-common//usr/share/openms/ install -m0755 -d debian/openms-doc/usr/share/doc/openms cp --reflink=auto -a ./debian/tmp/usr/share/doc/openms/html ./debian/tmp/usr/share/openms/examples debian/openms-doc/usr/share/doc/openms/ install -m0755 -d debian/openms-doc/usr/share/doc/openms/html cp --reflink=auto -a ./debian/tmp/usr/share/doc/openms/index.html debian/openms-doc/usr/share/doc/openms/html/ install -m0755 -d debian/openms-doc/usr/share/doc/openms/tutorials cp --reflink=auto -a ./debian/tmp/usr/share/doc/openms/OpenMS_tutorial.pdf ./debian/tmp/usr/share/doc/openms/TOPP_tutorial.pdf debian/openms-doc/usr/share/doc/openms/tutorials/ dh_installdocs -O--buildsystem=cmake -O--no-parallel dh_installdocs: warning: Could not parse openms-doc.doc-base.topp-tutorial for doc-base Document id; skipping install -m0755 -d debian/libopenms2.6.0/usr/share/doc/libopenms2.6.0 install -p -m0644 debian/copyright debian/libopenms2.6.0/usr/share/doc/libopenms2.6.0/copyright install -m0755 -d debian/libopenms-dev/usr/share/doc/libopenms-dev install -p -m0644 debian/copyright debian/libopenms-dev/usr/share/doc/libopenms-dev/copyright install -m0755 -d debian/topp/usr/share/doc/topp install -p -m0644 debian/copyright debian/topp/usr/share/doc/topp/copyright install -m0755 -d debian/openms-common/usr/share/doc/openms-common install -p -m0644 debian/copyright debian/openms-common/usr/share/doc/openms-common/copyright install -m0755 -d debian/openms-doc/usr/share/doc/openms-doc install -p -m0644 debian/copyright debian/openms-doc/usr/share/doc/openms-doc/copyright install -m0755 -d debian/openms-doc/usr/share/doc-base/ install -p -m0644 debian/openms-doc.doc-base.libopenms-tutorial debian/openms-doc/usr/share/doc-base/openms-doc.libopenms-documentation install -m0755 -d debian/openms/usr/share/doc/openms install -m0755 -d debian/openms/usr/share/doc/openms cp --reflink=auto -a ./AUTHORS debian/openms/usr/share/doc/openms chown -R 0:0 debian/openms/usr/share/doc chmod -R u\+rw,go=rX debian/openms/usr/share/doc install -p -m0644 debian/copyright debian/openms/usr/share/doc/openms/copyright dh_installchangelogs -O--buildsystem=cmake -O--no-parallel install -m0755 -d debian/libopenms2.6.0/usr/share/doc/libopenms2.6.0 install -p -m0644 debian/.debhelper/generated/libopenms2.6.0/dh_installchangelogs.dch.trimmed debian/libopenms2.6.0/usr/share/doc/libopenms2.6.0/changelog.Debian install -p -m0644 ./CHANGELOG debian/libopenms2.6.0/usr/share/doc/libopenms2.6.0/changelog install -m0755 -d debian/libopenms-dev/usr/share/doc/libopenms-dev install -p -m0644 debian/.debhelper/generated/libopenms-dev/dh_installchangelogs.dch.trimmed debian/libopenms-dev/usr/share/doc/libopenms-dev/changelog.Debian install -p -m0644 ./CHANGELOG debian/libopenms-dev/usr/share/doc/libopenms-dev/changelog install -m0755 -d debian/openms-common/usr/share/doc/openms-common install -p -m0644 debian/.debhelper/generated/openms-common/dh_installchangelogs.dch.trimmed debian/openms-common/usr/share/doc/openms-common/changelog.Debian install -p -m0644 ./CHANGELOG debian/openms-common/usr/share/doc/openms-common/changelog install -m0755 -d debian/openms-doc/usr/share/doc/openms-doc install -p -m0644 debian/.debhelper/generated/openms-doc/dh_installchangelogs.dch.trimmed debian/openms-doc/usr/share/doc/openms-doc/changelog.Debian install -p -m0644 ./CHANGELOG debian/openms-doc/usr/share/doc/openms-doc/changelog install -m0755 -d debian/topp/usr/share/doc/topp install -p -m0644 debian/.debhelper/generated/topp/dh_installchangelogs.dch.trimmed debian/topp/usr/share/doc/topp/changelog.Debian install -p -m0644 ./CHANGELOG debian/topp/usr/share/doc/topp/changelog install -m0755 -d debian/openms/usr/share/doc/openms install -p -m0644 debian/.debhelper/generated/openms/dh_installchangelogs.dch.trimmed debian/openms/usr/share/doc/openms/changelog.Debian install -p -m0644 ./CHANGELOG debian/openms/usr/share/doc/openms/changelog dh_installexamples -O--buildsystem=cmake -O--no-parallel dh_installman -O--buildsystem=cmake -O--no-parallel install -m0755 -d debian/openms-common/usr/share/man/man7/ install -p -m0644 ./debian/openms-common.7 debian/openms-common/usr/share/man/man7/openms-common.7 install -m0755 -d debian/topp/usr/share/man/man1/ install -p -m0644 ./debian/topp.1 debian/topp/usr/share/man/man1/topp.1 install -m0755 -d debian/libopenms2.6.0/usr/share/man/man3/ install -p -m0644 ./debian/libopenms.3 debian/libopenms2.6.0/usr/share/man/man3/libopenms.3 install -m0755 -d debian/openms-doc/usr/share/man/man7/ install -p -m0644 ./debian/openms-doc.7 debian/openms-doc/usr/share/man/man7/openms-doc.7 install -m0755 -d debian/openms/usr/share/man/man7/ install -p -m0644 ./debian/openms.7 debian/openms/usr/share/man/man7/openms.7 man-recode --to-code UTF-8 --suffix .dh-new debian/libopenms2.6.0/usr/share/man/man3/libopenms.3 man-recode --to-code UTF-8 --suffix .dh-new debian/topp/usr/share/man/man1/topp.1 man-recode --to-code UTF-8 --suffix .dh-new debian/openms-common/usr/share/man/man7/openms-common.7 man-recode --to-code UTF-8 --suffix .dh-new debian/openms-doc/usr/share/man/man7/openms-doc.7 man-recode --to-code UTF-8 --suffix .dh-new debian/openms/usr/share/man/man7/openms.7 mv debian/libopenms2.6.0/usr/share/man/man3/libopenms.3.dh-new debian/libopenms2.6.0/usr/share/man/man3/libopenms.3 chmod 0644 -- debian/libopenms2.6.0/usr/share/man/man3/libopenms.3 mv debian/openms-common/usr/share/man/man7/openms-common.7.dh-new debian/openms-common/usr/share/man/man7/openms-common.7 chmod 0644 -- debian/openms-common/usr/share/man/man7/openms-common.7 mv debian/topp/usr/share/man/man1/topp.1.dh-new debian/topp/usr/share/man/man1/topp.1 chmod 0644 -- debian/topp/usr/share/man/man1/topp.1 mv debian/openms-doc/usr/share/man/man7/openms-doc.7.dh-new debian/openms-doc/usr/share/man/man7/openms-doc.7 chmod 0644 -- debian/openms-doc/usr/share/man/man7/openms-doc.7 mv debian/openms/usr/share/man/man7/openms.7.dh-new debian/openms/usr/share/man/man7/openms.7 chmod 0644 -- debian/openms/usr/share/man/man7/openms.7 dh_installcatalogs -O--buildsystem=cmake -O--no-parallel dh_installcron -O--buildsystem=cmake -O--no-parallel dh_installdebconf -O--buildsystem=cmake -O--no-parallel install -m0755 -d debian/libopenms2.6.0/DEBIAN install -m0755 -d debian/libopenms-dev/DEBIAN install -m0755 -d debian/topp/DEBIAN install -m0755 -d debian/openms-common/DEBIAN install -m0755 -d debian/openms-doc/DEBIAN install -m0755 -d debian/openms/DEBIAN dh_installemacsen -O--buildsystem=cmake -O--no-parallel dh_installifupdown -O--buildsystem=cmake -O--no-parallel dh_installinfo -O--buildsystem=cmake -O--no-parallel dh_installinit -O--buildsystem=cmake -O--no-parallel dh_installsystemd -O--buildsystem=cmake -O--no-parallel dh_installsystemduser -O--buildsystem=cmake -O--no-parallel dh_installmenu -O--buildsystem=cmake -O--no-parallel dh_installmime -O--buildsystem=cmake -O--no-parallel dh_installmodules -O--buildsystem=cmake -O--no-parallel dh_installlogcheck -O--buildsystem=cmake -O--no-parallel dh_installlogrotate -O--buildsystem=cmake -O--no-parallel dh_installpam -O--buildsystem=cmake -O--no-parallel dh_installppp -O--buildsystem=cmake -O--no-parallel dh_installudev -O--buildsystem=cmake -O--no-parallel dh_installgsettings -O--buildsystem=cmake -O--no-parallel dh_installinitramfs -O--buildsystem=cmake -O--no-parallel dh_installalternatives -O--buildsystem=cmake -O--no-parallel dh_bugfiles -O--buildsystem=cmake -O--no-parallel dh_ucf -O--buildsystem=cmake -O--no-parallel dh_lintian -O--buildsystem=cmake -O--no-parallel install -m0755 -d debian/libopenms2.6.0/usr/share/lintian/overrides install -p -m0644 debian/libopenms2.6.0.lintian-overrides debian/libopenms2.6.0/usr/share/lintian/overrides/libopenms2.6.0 install -m0755 -d debian/topp/usr/share/lintian/overrides install -p -m0644 debian/topp.lintian-overrides debian/topp/usr/share/lintian/overrides/topp dh_icons -O--buildsystem=cmake -O--no-parallel dh_perl -O--buildsystem=cmake -O--no-parallel dh_usrlocal -O--buildsystem=cmake -O--no-parallel dh_link -O--buildsystem=cmake -O--no-parallel install -m0755 -d debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu rm -f debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libSuperHirn.so.2 ln -s libSuperHirn.so.2.6.0 debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libSuperHirn.so.2 install -m0755 -d debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu rm -f debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2 ln -s libOpenSwathAlgo.so.2.6.0 debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2 install -m0755 -d debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu rm -f debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libOpenMS_GUI.so.2 ln -s libOpenMS_GUI.so.2.6.0 debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libOpenMS_GUI.so.2 install -m0755 -d debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu rm -f debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libOpenMS.so.2 ln -s libOpenMS.so.2.6.0 debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libOpenMS.so.2 install -m0755 -d debian/libopenms-dev/usr/lib/x86_64-linux-gnu rm -f debian/libopenms-dev/usr/lib/x86_64-linux-gnu/libSuperHirn.so ln -s libSuperHirn.so.2.6.0 debian/libopenms-dev/usr/lib/x86_64-linux-gnu/libSuperHirn.so install -m0755 -d debian/libopenms-dev/usr/lib/x86_64-linux-gnu rm -f debian/libopenms-dev/usr/lib/x86_64-linux-gnu/libOpenSwathAlgo.so ln -s libOpenSwathAlgo.so.2.6.0 debian/libopenms-dev/usr/lib/x86_64-linux-gnu/libOpenSwathAlgo.so install -m0755 -d debian/libopenms-dev/usr/lib/x86_64-linux-gnu rm -f debian/libopenms-dev/usr/lib/x86_64-linux-gnu/libOpenMS_GUI.so ln -s libOpenMS_GUI.so.2.6.0 debian/libopenms-dev/usr/lib/x86_64-linux-gnu/libOpenMS_GUI.so install -m0755 -d debian/libopenms-dev/usr/lib/x86_64-linux-gnu rm -f debian/libopenms-dev/usr/lib/x86_64-linux-gnu/libOpenMS.so ln -s libOpenMS.so.2.6.0 debian/libopenms-dev/usr/lib/x86_64-linux-gnu/libOpenMS.so install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/XTandemAdapter.1 ln -s topp.1 debian/topp/usr/share/man/man1/XTandemAdapter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/XMLValidator.1 ln -s topp.1 debian/topp/usr/share/man/man1/XMLValidator.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/XFDR.1 ln -s topp.1 debian/topp/usr/share/man/man1/XFDR.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/TransformationEvaluation.1 ln -s topp.1 debian/topp/usr/share/man/man1/TransformationEvaluation.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/TextExporter.1 ln -s topp.1 debian/topp/usr/share/man/man1/TextExporter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/TargetedFileConverter.1 ln -s topp.1 debian/topp/usr/share/man/man1/TargetedFileConverter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/TOPPView.1 ln -s topp.1 debian/topp/usr/share/man/man1/TOPPView.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/TOPPAS.1 ln -s topp.1 debian/topp/usr/share/man/man1/TOPPAS.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/TOFCalibration.1 ln -s topp.1 debian/topp/usr/share/man/man1/TOFCalibration.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/TICCalculator.1 ln -s topp.1 debian/topp/usr/share/man/man1/TICCalculator.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/SwathWizard.1 ln -s topp.1 debian/topp/usr/share/man/man1/SwathWizard.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/SvmTheoreticalSpectrumGeneratorTrainer.1 ln -s topp.1 debian/topp/usr/share/man/man1/SvmTheoreticalSpectrumGeneratorTrainer.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/StaticModification.1 ln -s topp.1 debian/topp/usr/share/man/man1/StaticModification.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/SpectraSTSearchAdapter.1 ln -s topp.1 debian/topp/usr/share/man/man1/SpectraSTSearchAdapter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/SpectraMerger.1 ln -s topp.1 debian/topp/usr/share/man/man1/SpectraMerger.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/SpectraFilterWindowMower.1 ln -s topp.1 debian/topp/usr/share/man/man1/SpectraFilterWindowMower.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/SpectraFilterThresholdMower.1 ln -s topp.1 debian/topp/usr/share/man/man1/SpectraFilterThresholdMower.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/SpectraFilterSqrtMower.1 ln -s topp.1 debian/topp/usr/share/man/man1/SpectraFilterSqrtMower.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/SpectraFilterScaler.1 ln -s topp.1 debian/topp/usr/share/man/man1/SpectraFilterScaler.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/SpectraFilterParentPeakMower.1 ln -s topp.1 debian/topp/usr/share/man/man1/SpectraFilterParentPeakMower.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/SpectraFilterNormalizer.1 ln -s topp.1 debian/topp/usr/share/man/man1/SpectraFilterNormalizer.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/SpectraFilterNLargest.1 ln -s topp.1 debian/topp/usr/share/man/man1/SpectraFilterNLargest.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/SpectraFilterMarkerMower.1 ln -s topp.1 debian/topp/usr/share/man/man1/SpectraFilterMarkerMower.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/SpectraFilterBernNorm.1 ln -s topp.1 debian/topp/usr/share/man/man1/SpectraFilterBernNorm.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/SpecLibSearcher.1 ln -s topp.1 debian/topp/usr/share/man/man1/SpecLibSearcher.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/SpecLibCreator.1 ln -s topp.1 debian/topp/usr/share/man/man1/SpecLibCreator.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/SiriusAdapter.1 ln -s topp.1 debian/topp/usr/share/man/man1/SiriusAdapter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/SimpleSearchEngine.1 ln -s topp.1 debian/topp/usr/share/man/man1/SimpleSearchEngine.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/SequenceCoverageCalculator.1 ln -s topp.1 debian/topp/usr/share/man/man1/SequenceCoverageCalculator.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/SemanticValidator.1 ln -s topp.1 debian/topp/usr/share/man/man1/SemanticValidator.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/SeedListGenerator.1 ln -s topp.1 debian/topp/usr/share/man/man1/SeedListGenerator.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/Resampler.1 ln -s topp.1 debian/topp/usr/share/man/man1/Resampler.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/RTPredict.1 ln -s topp.1 debian/topp/usr/share/man/man1/RTPredict.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/RTModel.1 ln -s topp.1 debian/topp/usr/share/man/man1/RTModel.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/RTEvaluation.1 ln -s topp.1 debian/topp/usr/share/man/man1/RTEvaluation.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/RNPxlXICFilter.1 ln -s topp.1 debian/topp/usr/share/man/man1/RNPxlXICFilter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/RNPxlSearch.1 ln -s topp.1 debian/topp/usr/share/man/man1/RNPxlSearch.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/RNAMassCalculator.1 ln -s topp.1 debian/topp/usr/share/man/man1/RNAMassCalculator.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/RNADigestor.1 ln -s topp.1 debian/topp/usr/share/man/man1/RNADigestor.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/QualityControl.1 ln -s topp.1 debian/topp/usr/share/man/man1/QualityControl.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/QCShrinker.1 ln -s topp.1 debian/topp/usr/share/man/man1/QCShrinker.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/QCMerger.1 ln -s topp.1 debian/topp/usr/share/man/man1/QCMerger.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/QCImporter.1 ln -s topp.1 debian/topp/usr/share/man/man1/QCImporter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/QCExtractor.1 ln -s topp.1 debian/topp/usr/share/man/man1/QCExtractor.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/QCExporter.1 ln -s topp.1 debian/topp/usr/share/man/man1/QCExporter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/QCEmbedder.1 ln -s topp.1 debian/topp/usr/share/man/man1/QCEmbedder.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/QCCalculator.1 ln -s topp.1 debian/topp/usr/share/man/man1/QCCalculator.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/ProteomicsLFQ.1 ln -s topp.1 debian/topp/usr/share/man/man1/ProteomicsLFQ.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/ProteinResolver.1 ln -s topp.1 debian/topp/usr/share/man/man1/ProteinResolver.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/ProteinQuantifier.1 ln -s topp.1 debian/topp/usr/share/man/man1/ProteinQuantifier.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/ProteinInference.1 ln -s topp.1 debian/topp/usr/share/man/man1/ProteinInference.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/PrecursorMassCorrector.1 ln -s topp.1 debian/topp/usr/share/man/man1/PrecursorMassCorrector.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/PrecursorIonSelector.1 ln -s topp.1 debian/topp/usr/share/man/man1/PrecursorIonSelector.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/PhosphoScoring.1 ln -s topp.1 debian/topp/usr/share/man/man1/PhosphoScoring.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/PercolatorAdapter.1 ln -s topp.1 debian/topp/usr/share/man/man1/PercolatorAdapter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/PeptideIndexer.1 ln -s topp.1 debian/topp/usr/share/man/man1/PeptideIndexer.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/PepNovoAdapter.1 ln -s topp.1 debian/topp/usr/share/man/man1/PepNovoAdapter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/PeakPickerWavelet.1 ln -s topp.1 debian/topp/usr/share/man/man1/PeakPickerWavelet.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/PeakPickerIterative.1 ln -s topp.1 debian/topp/usr/share/man/man1/PeakPickerIterative.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/PeakPickerHiRes.1 ln -s topp.1 debian/topp/usr/share/man/man1/PeakPickerHiRes.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/PTPredict.1 ln -s topp.1 debian/topp/usr/share/man/man1/PTPredict.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/PTModel.1 ln -s topp.1 debian/topp/usr/share/man/man1/PTModel.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/PSMFeatureExtractor.1 ln -s topp.1 debian/topp/usr/share/man/man1/PSMFeatureExtractor.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/OpenSwathWorkflow.1 ln -s topp.1 debian/topp/usr/share/man/man1/OpenSwathWorkflow.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/OpenSwathRewriteToFeatureXML.1 ln -s topp.1 debian/topp/usr/share/man/man1/OpenSwathRewriteToFeatureXML.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/OpenSwathRTNormalizer.1 ln -s topp.1 debian/topp/usr/share/man/man1/OpenSwathRTNormalizer.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/OpenSwathMzMLFileCacher.1 ln -s topp.1 debian/topp/usr/share/man/man1/OpenSwathMzMLFileCacher.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/OpenSwathFileSplitter.1 ln -s topp.1 debian/topp/usr/share/man/man1/OpenSwathFileSplitter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/OpenSwathFeatureXMLToTSV.1 ln -s topp.1 debian/topp/usr/share/man/man1/OpenSwathFeatureXMLToTSV.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/OpenSwathDecoyGenerator.1 ln -s topp.1 debian/topp/usr/share/man/man1/OpenSwathDecoyGenerator.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/OpenSwathDIAPreScoring.1 ln -s topp.1 debian/topp/usr/share/man/man1/OpenSwathDIAPreScoring.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/OpenSwathConfidenceScoring.1 ln -s topp.1 debian/topp/usr/share/man/man1/OpenSwathConfidenceScoring.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/OpenSwathChromatogramExtractor.1 ln -s topp.1 debian/topp/usr/share/man/man1/OpenSwathChromatogramExtractor.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/OpenSwathAssayGenerator.1 ln -s topp.1 debian/topp/usr/share/man/man1/OpenSwathAssayGenerator.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/OpenSwathAnalyzer.1 ln -s topp.1 debian/topp/usr/share/man/man1/OpenSwathAnalyzer.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/OpenPepXLLF.1 ln -s topp.1 debian/topp/usr/share/man/man1/OpenPepXLLF.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/OpenPepXL.1 ln -s topp.1 debian/topp/usr/share/man/man1/OpenPepXL.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/OpenMSInfo.1 ln -s topp.1 debian/topp/usr/share/man/man1/OpenMSInfo.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/OMSSAAdapter.1 ln -s topp.1 debian/topp/usr/share/man/man1/OMSSAAdapter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/NucleicAcidSearchEngine.1 ln -s topp.1 debian/topp/usr/share/man/man1/NucleicAcidSearchEngine.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/NovorAdapter.1 ln -s topp.1 debian/topp/usr/share/man/man1/NovorAdapter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/NoiseFilterSGolay.1 ln -s topp.1 debian/topp/usr/share/man/man1/NoiseFilterSGolay.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/NoiseFilterGaussian.1 ln -s topp.1 debian/topp/usr/share/man/man1/NoiseFilterGaussian.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MzTabExporter.1 ln -s topp.1 debian/topp/usr/share/man/man1/MzTabExporter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MzMLSplitter.1 ln -s topp.1 debian/topp/usr/share/man/man1/MzMLSplitter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MyriMatchAdapter.1 ln -s topp.1 debian/topp/usr/share/man/man1/MyriMatchAdapter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MultiplexResolver.1 ln -s topp.1 debian/topp/usr/share/man/man1/MultiplexResolver.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MetaboliteSpectralMatcher.1 ln -s topp.1 debian/topp/usr/share/man/man1/MetaboliteSpectralMatcher.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MetaboliteAdductDecharger.1 ln -s topp.1 debian/topp/usr/share/man/man1/MetaboliteAdductDecharger.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MetaProSIP.1 ln -s topp.1 debian/topp/usr/share/man/man1/MetaProSIP.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MassTraceExtractor.1 ln -s topp.1 debian/topp/usr/share/man/man1/MassTraceExtractor.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MassCalculator.1 ln -s topp.1 debian/topp/usr/share/man/man1/MassCalculator.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MascotAdapterOnline.1 ln -s topp.1 debian/topp/usr/share/man/man1/MascotAdapterOnline.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MascotAdapter.1 ln -s topp.1 debian/topp/usr/share/man/man1/MascotAdapter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MapStatistics.1 ln -s topp.1 debian/topp/usr/share/man/man1/MapStatistics.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MapRTTransformer.1 ln -s topp.1 debian/topp/usr/share/man/man1/MapRTTransformer.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MapNormalizer.1 ln -s topp.1 debian/topp/usr/share/man/man1/MapNormalizer.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MapAlignerTreeGuided.1 ln -s topp.1 debian/topp/usr/share/man/man1/MapAlignerTreeGuided.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MapAlignerSpectrum.1 ln -s topp.1 debian/topp/usr/share/man/man1/MapAlignerSpectrum.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MapAlignerPoseClustering.1 ln -s topp.1 debian/topp/usr/share/man/man1/MapAlignerPoseClustering.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MapAlignerIdentification.1 ln -s topp.1 debian/topp/usr/share/man/man1/MapAlignerIdentification.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MaRaClusterAdapter.1 ln -s topp.1 debian/topp/usr/share/man/man1/MaRaClusterAdapter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MSstatsConverter.1 ln -s topp.1 debian/topp/usr/share/man/man1/MSstatsConverter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MSSimulator.1 ln -s topp.1 debian/topp/usr/share/man/man1/MSSimulator.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MSGFPlusAdapter.1 ln -s topp.1 debian/topp/usr/share/man/man1/MSGFPlusAdapter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MSFraggerAdapter.1 ln -s topp.1 debian/topp/usr/share/man/man1/MSFraggerAdapter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MRMTransitionGroupPicker.1 ln -s topp.1 debian/topp/usr/share/man/man1/MRMTransitionGroupPicker.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MRMPairFinder.1 ln -s topp.1 debian/topp/usr/share/man/man1/MRMPairFinder.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/MRMMapper.1 ln -s topp.1 debian/topp/usr/share/man/man1/MRMMapper.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/LuciphorAdapter.1 ln -s topp.1 debian/topp/usr/share/man/man1/LuciphorAdapter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/LabeledEval.1 ln -s topp.1 debian/topp/usr/share/man/man1/LabeledEval.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/IsobaricAnalyzer.1 ln -s topp.1 debian/topp/usr/share/man/man1/IsobaricAnalyzer.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/InternalCalibration.1 ln -s topp.1 debian/topp/usr/share/man/man1/InternalCalibration.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/InspectAdapter.1 ln -s topp.1 debian/topp/usr/share/man/man1/InspectAdapter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/InclusionExclusionListCreator.1 ln -s topp.1 debian/topp/usr/share/man/man1/InclusionExclusionListCreator.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/ImageCreator.1 ln -s topp.1 debian/topp/usr/share/man/man1/ImageCreator.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/INIUpdater.1 ln -s topp.1 debian/topp/usr/share/man/man1/INIUpdater.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/INIFileEditor.1 ln -s topp.1 debian/topp/usr/share/man/man1/INIFileEditor.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/IDSplitter.1 ln -s topp.1 debian/topp/usr/share/man/man1/IDSplitter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/IDScoreSwitcher.1 ln -s topp.1 debian/topp/usr/share/man/man1/IDScoreSwitcher.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/IDRipper.1 ln -s topp.1 debian/topp/usr/share/man/man1/IDRipper.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/IDRTCalibration.1 ln -s topp.1 debian/topp/usr/share/man/man1/IDRTCalibration.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/IDPosteriorErrorProbability.1 ln -s topp.1 debian/topp/usr/share/man/man1/IDPosteriorErrorProbability.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/IDMerger.1 ln -s topp.1 debian/topp/usr/share/man/man1/IDMerger.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/IDMassAccuracy.1 ln -s topp.1 debian/topp/usr/share/man/man1/IDMassAccuracy.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/IDMapper.1 ln -s topp.1 debian/topp/usr/share/man/man1/IDMapper.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/IDFilter.1 ln -s topp.1 debian/topp/usr/share/man/man1/IDFilter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/IDFileConverter.1 ln -s topp.1 debian/topp/usr/share/man/man1/IDFileConverter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/IDExtractor.1 ln -s topp.1 debian/topp/usr/share/man/man1/IDExtractor.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/IDDecoyProbability.1 ln -s topp.1 debian/topp/usr/share/man/man1/IDDecoyProbability.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/IDConflictResolver.1 ln -s topp.1 debian/topp/usr/share/man/man1/IDConflictResolver.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/HighResPrecursorMassCorrector.1 ln -s topp.1 debian/topp/usr/share/man/man1/HighResPrecursorMassCorrector.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/GenericWrapper.1 ln -s topp.1 debian/topp/usr/share/man/man1/GenericWrapper.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/GNPSExport.1 ln -s topp.1 debian/topp/usr/share/man/man1/GNPSExport.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/FuzzyDiff.1 ln -s topp.1 debian/topp/usr/share/man/man1/FuzzyDiff.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/FileMerger.1 ln -s topp.1 debian/topp/usr/share/man/man1/FileMerger.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/FileInfo.1 ln -s topp.1 debian/topp/usr/share/man/man1/FileInfo.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/FileFilter.1 ln -s topp.1 debian/topp/usr/share/man/man1/FileFilter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/FileConverter.1 ln -s topp.1 debian/topp/usr/share/man/man1/FileConverter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/FidoAdapter.1 ln -s topp.1 debian/topp/usr/share/man/man1/FidoAdapter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/FeatureLinkerUnlabeledQT.1 ln -s topp.1 debian/topp/usr/share/man/man1/FeatureLinkerUnlabeledQT.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/FeatureLinkerUnlabeledKD.1 ln -s topp.1 debian/topp/usr/share/man/man1/FeatureLinkerUnlabeledKD.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/FeatureLinkerUnlabeled.1 ln -s topp.1 debian/topp/usr/share/man/man1/FeatureLinkerUnlabeled.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/FeatureLinkerLabeled.1 ln -s topp.1 debian/topp/usr/share/man/man1/FeatureLinkerLabeled.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/FeatureFinderSuperHirn.1 ln -s topp.1 debian/topp/usr/share/man/man1/FeatureFinderSuperHirn.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/FeatureFinderMultiplex.1 ln -s topp.1 debian/topp/usr/share/man/man1/FeatureFinderMultiplex.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/FeatureFinderMetaboIdent.1 ln -s topp.1 debian/topp/usr/share/man/man1/FeatureFinderMetaboIdent.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/FeatureFinderMetabo.1 ln -s topp.1 debian/topp/usr/share/man/man1/FeatureFinderMetabo.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/FeatureFinderMRM.1 ln -s topp.1 debian/topp/usr/share/man/man1/FeatureFinderMRM.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/FeatureFinderIsotopeWavelet.1 ln -s topp.1 debian/topp/usr/share/man/man1/FeatureFinderIsotopeWavelet.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/FeatureFinderIdentification.1 ln -s topp.1 debian/topp/usr/share/man/man1/FeatureFinderIdentification.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/FeatureFinderCentroided.1 ln -s topp.1 debian/topp/usr/share/man/man1/FeatureFinderCentroided.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/FalseDiscoveryRate.1 ln -s topp.1 debian/topp/usr/share/man/man1/FalseDiscoveryRate.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/FFEval.1 ln -s topp.1 debian/topp/usr/share/man/man1/FFEval.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/ExternalCalibration.1 ln -s topp.1 debian/topp/usr/share/man/man1/ExternalCalibration.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/ExecutePipeline.1 ln -s topp.1 debian/topp/usr/share/man/man1/ExecutePipeline.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/Epifany.1 ln -s topp.1 debian/topp/usr/share/man/man1/Epifany.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/ERPairFinder.1 ln -s topp.1 debian/topp/usr/share/man/man1/ERPairFinder.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/EICExtractor.1 ln -s topp.1 debian/topp/usr/share/man/man1/EICExtractor.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/DigestorMotif.1 ln -s topp.1 debian/topp/usr/share/man/man1/DigestorMotif.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/Digestor.1 ln -s topp.1 debian/topp/usr/share/man/man1/Digestor.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/DecoyDatabase.1 ln -s topp.1 debian/topp/usr/share/man/man1/DecoyDatabase.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/Decharger.1 ln -s topp.1 debian/topp/usr/share/man/man1/Decharger.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/DeMeanderize.1 ln -s topp.1 debian/topp/usr/share/man/man1/DeMeanderize.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/DatabaseSuitability.1 ln -s topp.1 debian/topp/usr/share/man/man1/DatabaseSuitability.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/DatabaseFilter.1 ln -s topp.1 debian/topp/usr/share/man/man1/DatabaseFilter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/DTAExtractor.1 ln -s topp.1 debian/topp/usr/share/man/man1/DTAExtractor.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/CruxAdapter.1 ln -s topp.1 debian/topp/usr/share/man/man1/CruxAdapter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/ConsensusMapNormalizer.1 ln -s topp.1 debian/topp/usr/share/man/man1/ConsensusMapNormalizer.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/ConsensusID.1 ln -s topp.1 debian/topp/usr/share/man/man1/ConsensusID.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/CompNovoCID.1 ln -s topp.1 debian/topp/usr/share/man/man1/CompNovoCID.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/CompNovo.1 ln -s topp.1 debian/topp/usr/share/man/man1/CompNovo.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/CometAdapter.1 ln -s topp.1 debian/topp/usr/share/man/man1/CometAdapter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/ClusterMassTracesByPrecursor.1 ln -s topp.1 debian/topp/usr/share/man/man1/ClusterMassTracesByPrecursor.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/ClusterMassTraces.1 ln -s topp.1 debian/topp/usr/share/man/man1/ClusterMassTraces.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/CVInspector.1 ln -s topp.1 debian/topp/usr/share/man/man1/CVInspector.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/BaselineFilter.1 ln -s topp.1 debian/topp/usr/share/man/man1/BaselineFilter.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/AssayGeneratorMetabo.1 ln -s topp.1 debian/topp/usr/share/man/man1/AssayGeneratorMetabo.1 install -m0755 -d debian/topp/usr/share/man/man1 rm -f debian/topp/usr/share/man/man1/AccurateMassSearch.1 ln -s topp.1 debian/topp/usr/share/man/man1/AccurateMassSearch.1 dh_installwm -O--buildsystem=cmake -O--no-parallel dh_installxfonts -O--buildsystem=cmake -O--no-parallel dh_strip_nondeterminism -O--buildsystem=cmake -O--no-parallel Using 1703341241 as canonical time Normalizing debian/openms-doc/usr/share/doc/openms/html/form_7_dark.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPP_labelfree_quant.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPPView_tools_pp_picked.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/bc_sd.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/form_3.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/form_1_dark.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/form_0_dark.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/MetaDataBrowser.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/tab_a.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/form_6_dark.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPPAS_parameters.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/form_4.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/nav_g.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/nav_fd.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/form_9_dark.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/form_6.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/tab_s.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPPView.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/form_5.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPPView_tools_ff_centroided.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/Kernel_DataPoints.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/OpenMS_75x55_transparent.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPPView_tools_menu.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/nav_hd.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/nav_f.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/Spectrum3DWidget.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/tab_sd.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPPView_tools_baseline.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPPView_tools_noisefilter_filtered.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/Spectrum2DWidget.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/form_5_dark.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/tab_hd.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/INIFileEditor.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPP_raw_data.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPPAS_edges.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/form_2.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPPView_tools.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/tab_b.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPP_qualitycontrol.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/bc_s.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPPAS_BSA_Quantitation.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/form_3_dark.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/tab_h.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPPAS_example_merger.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/form_0.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/form_7.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/form_2_dark.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPPAS_example_profile_data_processing.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPPView_1D.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPPView_statistics.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/SILACAnalyzer_algorithm.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/closed.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/Terms_Spectrum.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/nav_h.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPPAS_BSA_results_3d.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/tab_ad.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/open.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/form_8_dark.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPPView_tools_baseline_filtered.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPP_alignment.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/form_9.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/Terms_Map.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/SwathWizard.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/form_1.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/sync_on.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/form_4_dark.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPP_labeled_quant.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPPView_parts.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/form_8.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPPView_help.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/splitbar.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPPAS_BSA_results_2d.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/tab_bd.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPPAS_run_options.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPPAS_simple_example.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/OpenMS_overview.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPPAS_Ecoli_Identification.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/splitbard.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPPView_tools_noisefilter.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPPView_icons.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/TOPP_consensus_id.png using File::StripNondeterminism::handlers::png Normalizing debian/openms-doc/usr/share/doc/openms/html/sync_off.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=cmake -O--no-parallel cd debian/libopenms-dev cd debian/libopenms2.6.0 cd debian/topp cd debian/openms-common cd debian/openms-doc cd debian/openms chmod a-x usr/share/doc/libopenms-dev/changelog usr/share/doc/libopenms-dev/changelog.Debian gzip -9nf usr/share/doc/libopenms-dev/changelog usr/share/doc/libopenms-dev/changelog.Debian chmod a-x usr/share/doc/topp/changelog usr/share/doc/topp/changelog.Debian usr/share/man/man1/topp.1 chmod a-x usr/share/doc/libopenms2.6.0/changelog usr/share/doc/libopenms2.6.0/changelog.Debian usr/share/man/man3/libopenms.3 chmod a-x usr/share/doc/openms-common/changelog usr/share/doc/openms-common/changelog.Debian usr/share/man/man7/openms-common.7 chmod a-x usr/share/doc/openms/changelog usr/share/doc/openms/changelog.Debian usr/share/man/man7/openms.7 gzip -9nf usr/share/doc/topp/changelog usr/share/doc/topp/changelog.Debian usr/share/man/man1/topp.1 gzip -9nf usr/share/doc/libopenms2.6.0/changelog usr/share/doc/libopenms2.6.0/changelog.Debian usr/share/man/man3/libopenms.3 gzip -9nf usr/share/doc/openms-common/changelog usr/share/doc/openms-common/changelog.Debian usr/share/man/man7/openms-common.7 gzip -9nf usr/share/doc/openms/changelog usr/share/doc/openms/changelog.Debian usr/share/man/man7/openms.7 cd '/build/reproducible-path/openms-2.6.0+cleaned1' cd '/build/reproducible-path/openms-2.6.0+cleaned1' cd '/build/reproducible-path/openms-2.6.0+cleaned1' cd '/build/reproducible-path/openms-2.6.0+cleaned1' cd '/build/reproducible-path/openms-2.6.0+cleaned1' rm -f debian/topp/usr/share/man/man1/QCExporter.1 debian/topp/usr/share/man/man1/QCExporter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/QCExporter.1.gz rm -f debian/topp/usr/share/man/man1/SpecLibCreator.1 debian/topp/usr/share/man/man1/SpecLibCreator.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/SpecLibCreator.1.gz rm -f debian/topp/usr/share/man/man1/OpenSwathRewriteToFeatureXML.1 debian/topp/usr/share/man/man1/OpenSwathRewriteToFeatureXML.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/OpenSwathRewriteToFeatureXML.1.gz rm -f debian/topp/usr/share/man/man1/FeatureFinderMetabo.1 debian/topp/usr/share/man/man1/FeatureFinderMetabo.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/FeatureFinderMetabo.1.gz rm -f debian/topp/usr/share/man/man1/InclusionExclusionListCreator.1 debian/topp/usr/share/man/man1/InclusionExclusionListCreator.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/InclusionExclusionListCreator.1.gz rm -f debian/topp/usr/share/man/man1/TOPPView.1 debian/topp/usr/share/man/man1/TOPPView.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/TOPPView.1.gz rm -f debian/topp/usr/share/man/man1/SeedListGenerator.1 debian/topp/usr/share/man/man1/SeedListGenerator.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/SeedListGenerator.1.gz rm -f debian/topp/usr/share/man/man1/FileInfo.1 debian/topp/usr/share/man/man1/FileInfo.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/FileInfo.1.gz rm -f debian/topp/usr/share/man/man1/OMSSAAdapter.1 debian/topp/usr/share/man/man1/OMSSAAdapter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/OMSSAAdapter.1.gz rm -f debian/topp/usr/share/man/man1/IDMassAccuracy.1 debian/topp/usr/share/man/man1/IDMassAccuracy.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/IDMassAccuracy.1.gz rm -f debian/topp/usr/share/man/man1/MultiplexResolver.1 debian/topp/usr/share/man/man1/MultiplexResolver.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MultiplexResolver.1.gz rm -f debian/topp/usr/share/man/man1/FeatureFinderIsotopeWavelet.1 debian/topp/usr/share/man/man1/FeatureFinderIsotopeWavelet.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/FeatureFinderIsotopeWavelet.1.gz rm -f debian/topp/usr/share/man/man1/SpectraFilterParentPeakMower.1 debian/topp/usr/share/man/man1/SpectraFilterParentPeakMower.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/SpectraFilterParentPeakMower.1.gz rm -f debian/topp/usr/share/man/man1/FeatureLinkerUnlabeled.1 debian/topp/usr/share/man/man1/FeatureLinkerUnlabeled.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/FeatureLinkerUnlabeled.1.gz rm -f debian/topp/usr/share/man/man1/FileMerger.1 debian/topp/usr/share/man/man1/FileMerger.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/FileMerger.1.gz rm -f debian/topp/usr/share/man/man1/MascotAdapterOnline.1 debian/topp/usr/share/man/man1/MascotAdapterOnline.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MascotAdapterOnline.1.gz rm -f debian/topp/usr/share/man/man1/QCExtractor.1 debian/topp/usr/share/man/man1/QCExtractor.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/QCExtractor.1.gz rm -f debian/topp/usr/share/man/man1/SpectraFilterNormalizer.1 debian/topp/usr/share/man/man1/SpectraFilterNormalizer.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/SpectraFilterNormalizer.1.gz rm -f debian/topp/usr/share/man/man1/MapRTTransformer.1 debian/topp/usr/share/man/man1/MapRTTransformer.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MapRTTransformer.1.gz rm -f debian/topp/usr/share/man/man1/MapStatistics.1 debian/topp/usr/share/man/man1/MapStatistics.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MapStatistics.1.gz rm -f debian/topp/usr/share/man/man1/MRMPairFinder.1 debian/topp/usr/share/man/man1/MRMPairFinder.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MRMPairFinder.1.gz rm -f debian/topp/usr/share/man/man1/RNADigestor.1 debian/topp/usr/share/man/man1/RNADigestor.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/RNADigestor.1.gz rm -f debian/topp/usr/share/man/man1/SpectraFilterThresholdMower.1 debian/topp/usr/share/man/man1/SpectraFilterThresholdMower.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/SpectraFilterThresholdMower.1.gz rm -f debian/topp/usr/share/man/man1/RTPredict.1 debian/topp/usr/share/man/man1/RTPredict.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/RTPredict.1.gz rm -f debian/topp/usr/share/man/man1/OpenPepXL.1 debian/topp/usr/share/man/man1/OpenPepXL.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/OpenPepXL.1.gz rm -f debian/topp/usr/share/man/man1/LuciphorAdapter.1 debian/topp/usr/share/man/man1/LuciphorAdapter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/LuciphorAdapter.1.gz rm -f debian/topp/usr/share/man/man1/FileFilter.1 debian/topp/usr/share/man/man1/FileFilter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/FileFilter.1.gz rm -f debian/topp/usr/share/man/man1/InternalCalibration.1 debian/topp/usr/share/man/man1/InternalCalibration.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/InternalCalibration.1.gz rm -f debian/topp/usr/share/man/man1/RNPxlSearch.1 debian/topp/usr/share/man/man1/RNPxlSearch.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/RNPxlSearch.1.gz rm -f debian/topp/usr/share/man/man1/PeakPickerWavelet.1 debian/topp/usr/share/man/man1/PeakPickerWavelet.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/PeakPickerWavelet.1.gz rm -f debian/topp/usr/share/man/man1/CruxAdapter.1 debian/topp/usr/share/man/man1/CruxAdapter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/CruxAdapter.1.gz rm -f debian/topp/usr/share/man/man1/IDMerger.1 debian/topp/usr/share/man/man1/IDMerger.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/IDMerger.1.gz rm -f debian/topp/usr/share/man/man1/FileConverter.1 debian/topp/usr/share/man/man1/FileConverter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/FileConverter.1.gz rm -f debian/topp/usr/share/man/man1/Epifany.1 debian/topp/usr/share/man/man1/Epifany.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/Epifany.1.gz rm -f debian/topp/usr/share/man/man1/QCCalculator.1 debian/topp/usr/share/man/man1/QCCalculator.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/QCCalculator.1.gz rm -f debian/topp/usr/share/man/man1/OpenPepXLLF.1 debian/topp/usr/share/man/man1/OpenPepXLLF.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/OpenPepXLLF.1.gz rm -f debian/topp/usr/share/man/man1/InspectAdapter.1 debian/topp/usr/share/man/man1/InspectAdapter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/InspectAdapter.1.gz rm -f debian/topp/usr/share/man/man1/MapNormalizer.1 debian/topp/usr/share/man/man1/MapNormalizer.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MapNormalizer.1.gz rm -f debian/topp/usr/share/man/man1/PeakPickerIterative.1 debian/topp/usr/share/man/man1/PeakPickerIterative.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/PeakPickerIterative.1.gz rm -f debian/topp/usr/share/man/man1/Digestor.1 debian/topp/usr/share/man/man1/Digestor.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/Digestor.1.gz rm -f debian/topp/usr/share/man/man1/BaselineFilter.1 debian/topp/usr/share/man/man1/BaselineFilter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/BaselineFilter.1.gz rm -f debian/topp/usr/share/man/man1/FeatureFinderMultiplex.1 debian/topp/usr/share/man/man1/FeatureFinderMultiplex.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/FeatureFinderMultiplex.1.gz rm -f debian/topp/usr/share/man/man1/IDSplitter.1 debian/topp/usr/share/man/man1/IDSplitter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/IDSplitter.1.gz rm -f debian/topp/usr/share/man/man1/MetaboliteSpectralMatcher.1 debian/topp/usr/share/man/man1/MetaboliteSpectralMatcher.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MetaboliteSpectralMatcher.1.gz rm -f debian/topp/usr/share/man/man1/MzTabExporter.1 debian/topp/usr/share/man/man1/MzTabExporter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MzTabExporter.1.gz rm -f debian/topp/usr/share/man/man1/MapAlignerSpectrum.1 debian/topp/usr/share/man/man1/MapAlignerSpectrum.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MapAlignerSpectrum.1.gz rm -f debian/topp/usr/share/man/man1/PeptideIndexer.1 debian/topp/usr/share/man/man1/PeptideIndexer.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/PeptideIndexer.1.gz rm -f debian/topp/usr/share/man/man1/FeatureLinkerLabeled.1 debian/topp/usr/share/man/man1/FeatureLinkerLabeled.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/FeatureLinkerLabeled.1.gz rm -f debian/topp/usr/share/man/man1/GenericWrapper.1 debian/topp/usr/share/man/man1/GenericWrapper.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/GenericWrapper.1.gz rm -f debian/topp/usr/share/man/man1/INIUpdater.1 debian/topp/usr/share/man/man1/INIUpdater.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/INIUpdater.1.gz rm -f debian/topp/usr/share/man/man1/MapAlignerTreeGuided.1 debian/topp/usr/share/man/man1/MapAlignerTreeGuided.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MapAlignerTreeGuided.1.gz rm -f debian/topp/usr/share/man/man1/OpenSwathFeatureXMLToTSV.1 debian/topp/usr/share/man/man1/OpenSwathFeatureXMLToTSV.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/OpenSwathFeatureXMLToTSV.1.gz rm -f debian/topp/usr/share/man/man1/FeatureFinderCentroided.1 debian/topp/usr/share/man/man1/FeatureFinderCentroided.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/FeatureFinderCentroided.1.gz rm -f debian/topp/usr/share/man/man1/TOPPAS.1 debian/topp/usr/share/man/man1/TOPPAS.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/TOPPAS.1.gz rm -f debian/topp/usr/share/man/man1/FeatureLinkerUnlabeledKD.1 debian/topp/usr/share/man/man1/FeatureLinkerUnlabeledKD.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/FeatureLinkerUnlabeledKD.1.gz rm -f debian/topp/usr/share/man/man1/OpenSwathRTNormalizer.1 debian/topp/usr/share/man/man1/OpenSwathRTNormalizer.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/OpenSwathRTNormalizer.1.gz rm -f debian/topp/usr/share/man/man1/NucleicAcidSearchEngine.1 debian/topp/usr/share/man/man1/NucleicAcidSearchEngine.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/NucleicAcidSearchEngine.1.gz rm -f debian/topp/usr/share/man/man1/PTPredict.1 debian/topp/usr/share/man/man1/PTPredict.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/PTPredict.1.gz rm -f debian/topp/usr/share/man/man1/LabeledEval.1 debian/topp/usr/share/man/man1/LabeledEval.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/LabeledEval.1.gz rm -f debian/topp/usr/share/man/man1/QCEmbedder.1 debian/topp/usr/share/man/man1/QCEmbedder.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/QCEmbedder.1.gz rm -f debian/topp/usr/share/man/man1/MSFraggerAdapter.1 debian/topp/usr/share/man/man1/MSFraggerAdapter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MSFraggerAdapter.1.gz rm -f debian/topp/usr/share/man/man1/SpectraFilterWindowMower.1 debian/topp/usr/share/man/man1/SpectraFilterWindowMower.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/SpectraFilterWindowMower.1.gz rm -f debian/topp/usr/share/man/man1/DecoyDatabase.1 debian/topp/usr/share/man/man1/DecoyDatabase.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/DecoyDatabase.1.gz rm -f debian/topp/usr/share/man/man1/TOFCalibration.1 debian/topp/usr/share/man/man1/TOFCalibration.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/TOFCalibration.1.gz rm -f debian/topp/usr/share/man/man1/ProteinResolver.1 debian/topp/usr/share/man/man1/ProteinResolver.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/ProteinResolver.1.gz rm -f debian/topp/usr/share/man/man1/ExecutePipeline.1 debian/topp/usr/share/man/man1/ExecutePipeline.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/ExecutePipeline.1.gz rm -f debian/topp/usr/share/man/man1/MassCalculator.1 debian/topp/usr/share/man/man1/MassCalculator.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MassCalculator.1.gz rm -f debian/topp/usr/share/man/man1/IDRipper.1 debian/topp/usr/share/man/man1/IDRipper.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/IDRipper.1.gz rm -f debian/topp/usr/share/man/man1/MRMMapper.1 debian/topp/usr/share/man/man1/MRMMapper.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MRMMapper.1.gz rm -f debian/topp/usr/share/man/man1/OpenSwathMzMLFileCacher.1 debian/topp/usr/share/man/man1/OpenSwathMzMLFileCacher.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/OpenSwathMzMLFileCacher.1.gz rm -f debian/topp/usr/share/man/man1/IDPosteriorErrorProbability.1 debian/topp/usr/share/man/man1/IDPosteriorErrorProbability.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/IDPosteriorErrorProbability.1.gz rm -f debian/topp/usr/share/man/man1/DatabaseSuitability.1 debian/topp/usr/share/man/man1/DatabaseSuitability.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/DatabaseSuitability.1.gz rm -f debian/topp/usr/share/man/man1/OpenSwathDIAPreScoring.1 debian/topp/usr/share/man/man1/OpenSwathDIAPreScoring.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/OpenSwathDIAPreScoring.1.gz rm -f debian/topp/usr/share/man/man1/AssayGeneratorMetabo.1 debian/topp/usr/share/man/man1/AssayGeneratorMetabo.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/AssayGeneratorMetabo.1.gz rm -f debian/topp/usr/share/man/man1/XFDR.1 debian/topp/usr/share/man/man1/XFDR.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/XFDR.1.gz rm -f debian/topp/usr/share/man/man1/OpenSwathAnalyzer.1 debian/topp/usr/share/man/man1/OpenSwathAnalyzer.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/OpenSwathAnalyzer.1.gz rm -f debian/topp/usr/share/man/man1/DatabaseFilter.1 debian/topp/usr/share/man/man1/DatabaseFilter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/DatabaseFilter.1.gz rm -f debian/topp/usr/share/man/man1/ERPairFinder.1 debian/topp/usr/share/man/man1/ERPairFinder.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/ERPairFinder.1.gz rm -f debian/topp/usr/share/man/man1/OpenSwathChromatogramExtractor.1 debian/topp/usr/share/man/man1/OpenSwathChromatogramExtractor.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/OpenSwathChromatogramExtractor.1.gz rm -f debian/topp/usr/share/man/man1/ConsensusID.1 debian/topp/usr/share/man/man1/ConsensusID.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/ConsensusID.1.gz rm -f debian/topp/usr/share/man/man1/XMLValidator.1 debian/topp/usr/share/man/man1/XMLValidator.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/XMLValidator.1.gz rm -f debian/topp/usr/share/man/man1/MSstatsConverter.1 debian/topp/usr/share/man/man1/MSstatsConverter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MSstatsConverter.1.gz rm -f debian/topp/usr/share/man/man1/ConsensusMapNormalizer.1 debian/topp/usr/share/man/man1/ConsensusMapNormalizer.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/ConsensusMapNormalizer.1.gz rm -f debian/topp/usr/share/man/man1/IDExtractor.1 debian/topp/usr/share/man/man1/IDExtractor.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/IDExtractor.1.gz rm -f debian/topp/usr/share/man/man1/PhosphoScoring.1 debian/topp/usr/share/man/man1/PhosphoScoring.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/PhosphoScoring.1.gz rm -f debian/topp/usr/share/man/man1/SpectraSTSearchAdapter.1 debian/topp/usr/share/man/man1/SpectraSTSearchAdapter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/SpectraSTSearchAdapter.1.gz rm -f debian/topp/usr/share/man/man1/SpecLibSearcher.1 debian/topp/usr/share/man/man1/SpecLibSearcher.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/SpecLibSearcher.1.gz rm -f debian/topp/usr/share/man/man1/SemanticValidator.1 debian/topp/usr/share/man/man1/SemanticValidator.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/SemanticValidator.1.gz rm -f debian/topp/usr/share/man/man1/IDScoreSwitcher.1 debian/topp/usr/share/man/man1/IDScoreSwitcher.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/IDScoreSwitcher.1.gz rm -f debian/topp/usr/share/man/man1/NoiseFilterGaussian.1 debian/topp/usr/share/man/man1/NoiseFilterGaussian.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/NoiseFilterGaussian.1.gz rm -f debian/topp/usr/share/man/man1/RTModel.1 debian/topp/usr/share/man/man1/RTModel.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/RTModel.1.gz rm -f debian/topp/usr/share/man/man1/MSGFPlusAdapter.1 debian/topp/usr/share/man/man1/MSGFPlusAdapter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MSGFPlusAdapter.1.gz rm -f debian/topp/usr/share/man/man1/FidoAdapter.1 debian/topp/usr/share/man/man1/FidoAdapter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/FidoAdapter.1.gz rm -f debian/topp/usr/share/man/man1/IDRTCalibration.1 debian/topp/usr/share/man/man1/IDRTCalibration.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/IDRTCalibration.1.gz rm -f debian/topp/usr/share/man/man1/SwathWizard.1 debian/topp/usr/share/man/man1/SwathWizard.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/SwathWizard.1.gz rm -f debian/topp/usr/share/man/man1/PercolatorAdapter.1 debian/topp/usr/share/man/man1/PercolatorAdapter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/PercolatorAdapter.1.gz rm -f debian/topp/usr/share/man/man1/FeatureFinderMetaboIdent.1 debian/topp/usr/share/man/man1/FeatureFinderMetaboIdent.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/FeatureFinderMetaboIdent.1.gz rm -f debian/topp/usr/share/man/man1/IDMapper.1 debian/topp/usr/share/man/man1/IDMapper.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/IDMapper.1.gz rm -f debian/topp/usr/share/man/man1/ClusterMassTracesByPrecursor.1 debian/topp/usr/share/man/man1/ClusterMassTracesByPrecursor.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/ClusterMassTracesByPrecursor.1.gz rm -f debian/topp/usr/share/man/man1/SpectraFilterScaler.1 debian/topp/usr/share/man/man1/SpectraFilterScaler.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/SpectraFilterScaler.1.gz rm -f debian/topp/usr/share/man/man1/ClusterMassTraces.1 debian/topp/usr/share/man/man1/ClusterMassTraces.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/ClusterMassTraces.1.gz rm -f debian/topp/usr/share/man/man1/PTModel.1 debian/topp/usr/share/man/man1/PTModel.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/PTModel.1.gz rm -f debian/topp/usr/share/man/man1/SiriusAdapter.1 debian/topp/usr/share/man/man1/SiriusAdapter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/SiriusAdapter.1.gz rm -f debian/topp/usr/share/man/man1/MascotAdapter.1 debian/topp/usr/share/man/man1/MascotAdapter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MascotAdapter.1.gz rm -f debian/topp/usr/share/man/man1/RTEvaluation.1 debian/topp/usr/share/man/man1/RTEvaluation.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/RTEvaluation.1.gz rm -f debian/topp/usr/share/man/man1/MyriMatchAdapter.1 debian/topp/usr/share/man/man1/MyriMatchAdapter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MyriMatchAdapter.1.gz rm -f debian/topp/usr/share/man/man1/TransformationEvaluation.1 debian/topp/usr/share/man/man1/TransformationEvaluation.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/TransformationEvaluation.1.gz rm -f debian/topp/usr/share/man/man1/RNPxlXICFilter.1 debian/topp/usr/share/man/man1/RNPxlXICFilter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/RNPxlXICFilter.1.gz rm -f debian/topp/usr/share/man/man1/QualityControl.1 debian/topp/usr/share/man/man1/QualityControl.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/QualityControl.1.gz rm -f debian/topp/usr/share/man/man1/SpectraFilterNLargest.1 debian/topp/usr/share/man/man1/SpectraFilterNLargest.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/SpectraFilterNLargest.1.gz rm -f debian/topp/usr/share/man/man1/SpectraMerger.1 debian/topp/usr/share/man/man1/SpectraMerger.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/SpectraMerger.1.gz rm -f debian/topp/usr/share/man/man1/IDDecoyProbability.1 debian/topp/usr/share/man/man1/IDDecoyProbability.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/IDDecoyProbability.1.gz rm -f debian/topp/usr/share/man/man1/MapAlignerPoseClustering.1 debian/topp/usr/share/man/man1/MapAlignerPoseClustering.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MapAlignerPoseClustering.1.gz rm -f debian/topp/usr/share/man/man1/PepNovoAdapter.1 debian/topp/usr/share/man/man1/PepNovoAdapter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/PepNovoAdapter.1.gz rm -f debian/topp/usr/share/man/man1/MzMLSplitter.1 debian/topp/usr/share/man/man1/MzMLSplitter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MzMLSplitter.1.gz rm -f debian/topp/usr/share/man/man1/FuzzyDiff.1 debian/topp/usr/share/man/man1/FuzzyDiff.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/FuzzyDiff.1.gz rm -f debian/topp/usr/share/man/man1/FalseDiscoveryRate.1 debian/topp/usr/share/man/man1/FalseDiscoveryRate.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/FalseDiscoveryRate.1.gz rm -f debian/topp/usr/share/man/man1/QCShrinker.1 debian/topp/usr/share/man/man1/QCShrinker.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/QCShrinker.1.gz rm -f debian/topp/usr/share/man/man1/PeakPickerHiRes.1 debian/topp/usr/share/man/man1/PeakPickerHiRes.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/PeakPickerHiRes.1.gz rm -f debian/topp/usr/share/man/man1/QCImporter.1 debian/topp/usr/share/man/man1/QCImporter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/QCImporter.1.gz rm -f debian/topp/usr/share/man/man1/ImageCreator.1 debian/topp/usr/share/man/man1/ImageCreator.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/ImageCreator.1.gz rm -f debian/topp/usr/share/man/man1/FFEval.1 debian/topp/usr/share/man/man1/FFEval.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/FFEval.1.gz rm -f debian/topp/usr/share/man/man1/EICExtractor.1 debian/topp/usr/share/man/man1/EICExtractor.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/EICExtractor.1.gz rm -f debian/topp/usr/share/man/man1/FeatureLinkerUnlabeledQT.1 debian/topp/usr/share/man/man1/FeatureLinkerUnlabeledQT.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/FeatureLinkerUnlabeledQT.1.gz rm -f debian/topp/usr/share/man/man1/SpectraFilterMarkerMower.1 debian/topp/usr/share/man/man1/SpectraFilterMarkerMower.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/SpectraFilterMarkerMower.1.gz rm -f debian/topp/usr/share/man/man1/CometAdapter.1 debian/topp/usr/share/man/man1/CometAdapter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/CometAdapter.1.gz rm -f debian/topp/usr/share/man/man1/NovorAdapter.1 debian/topp/usr/share/man/man1/NovorAdapter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/NovorAdapter.1.gz rm -f debian/topp/usr/share/man/man1/CompNovo.1 debian/topp/usr/share/man/man1/CompNovo.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/CompNovo.1.gz rm -f debian/topp/usr/share/man/man1/INIFileEditor.1 debian/topp/usr/share/man/man1/INIFileEditor.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/INIFileEditor.1.gz rm -f debian/topp/usr/share/man/man1/NoiseFilterSGolay.1 debian/topp/usr/share/man/man1/NoiseFilterSGolay.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/NoiseFilterSGolay.1.gz rm -f debian/topp/usr/share/man/man1/OpenSwathAssayGenerator.1 debian/topp/usr/share/man/man1/OpenSwathAssayGenerator.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/OpenSwathAssayGenerator.1.gz rm -f debian/topp/usr/share/man/man1/SvmTheoreticalSpectrumGeneratorTrainer.1 debian/topp/usr/share/man/man1/SvmTheoreticalSpectrumGeneratorTrainer.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/SvmTheoreticalSpectrumGeneratorTrainer.1.gz rm -f debian/topp/usr/share/man/man1/QCMerger.1 debian/topp/usr/share/man/man1/QCMerger.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/QCMerger.1.gz rm -f debian/topp/usr/share/man/man1/MassTraceExtractor.1 debian/topp/usr/share/man/man1/MassTraceExtractor.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MassTraceExtractor.1.gz rm -f debian/topp/usr/share/man/man1/MapAlignerIdentification.1 debian/topp/usr/share/man/man1/MapAlignerIdentification.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MapAlignerIdentification.1.gz rm -f debian/topp/usr/share/man/man1/Resampler.1 debian/topp/usr/share/man/man1/Resampler.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/Resampler.1.gz rm -f debian/topp/usr/share/man/man1/MRMTransitionGroupPicker.1 debian/topp/usr/share/man/man1/MRMTransitionGroupPicker.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MRMTransitionGroupPicker.1.gz rm -f debian/topp/usr/share/man/man1/OpenSwathConfidenceScoring.1 debian/topp/usr/share/man/man1/OpenSwathConfidenceScoring.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/OpenSwathConfidenceScoring.1.gz rm -f debian/topp/usr/share/man/man1/PSMFeatureExtractor.1 debian/topp/usr/share/man/man1/PSMFeatureExtractor.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/PSMFeatureExtractor.1.gz rm -f debian/topp/usr/share/man/man1/MetaProSIP.1 debian/topp/usr/share/man/man1/MetaProSIP.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MetaProSIP.1.gz rm -f debian/topp/usr/share/man/man1/CompNovoCID.1 debian/topp/usr/share/man/man1/CompNovoCID.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/CompNovoCID.1.gz rm -f debian/topp/usr/share/man/man1/OpenMSInfo.1 debian/topp/usr/share/man/man1/OpenMSInfo.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/OpenMSInfo.1.gz rm -f debian/topp/usr/share/man/man1/DeMeanderize.1 debian/topp/usr/share/man/man1/DeMeanderize.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/DeMeanderize.1.gz rm -f debian/topp/usr/share/man/man1/PrecursorIonSelector.1 debian/topp/usr/share/man/man1/PrecursorIonSelector.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/PrecursorIonSelector.1.gz rm -f debian/topp/usr/share/man/man1/RNAMassCalculator.1 debian/topp/usr/share/man/man1/RNAMassCalculator.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/RNAMassCalculator.1.gz rm -f debian/topp/usr/share/man/man1/SpectraFilterBernNorm.1 debian/topp/usr/share/man/man1/SpectraFilterBernNorm.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/SpectraFilterBernNorm.1.gz rm -f debian/topp/usr/share/man/man1/ProteomicsLFQ.1 debian/topp/usr/share/man/man1/ProteomicsLFQ.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/ProteomicsLFQ.1.gz rm -f debian/topp/usr/share/man/man1/ProteinQuantifier.1 debian/topp/usr/share/man/man1/ProteinQuantifier.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/ProteinQuantifier.1.gz rm -f debian/topp/usr/share/man/man1/SpectraFilterSqrtMower.1 debian/topp/usr/share/man/man1/SpectraFilterSqrtMower.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/SpectraFilterSqrtMower.1.gz rm -f debian/topp/usr/share/man/man1/SequenceCoverageCalculator.1 debian/topp/usr/share/man/man1/SequenceCoverageCalculator.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/SequenceCoverageCalculator.1.gz rm -f debian/topp/usr/share/man/man1/GNPSExport.1 debian/topp/usr/share/man/man1/GNPSExport.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/GNPSExport.1.gz rm -f debian/topp/usr/share/man/man1/TextExporter.1 debian/topp/usr/share/man/man1/TextExporter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/TextExporter.1.gz rm -f debian/topp/usr/share/man/man1/XTandemAdapter.1 debian/topp/usr/share/man/man1/XTandemAdapter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/XTandemAdapter.1.gz rm -f debian/topp/usr/share/man/man1/FeatureFinderMRM.1 debian/topp/usr/share/man/man1/FeatureFinderMRM.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/FeatureFinderMRM.1.gz rm -f debian/topp/usr/share/man/man1/ProteinInference.1 debian/topp/usr/share/man/man1/ProteinInference.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/ProteinInference.1.gz rm -f debian/topp/usr/share/man/man1/OpenSwathDecoyGenerator.1 debian/topp/usr/share/man/man1/OpenSwathDecoyGenerator.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/OpenSwathDecoyGenerator.1.gz rm -f debian/topp/usr/share/man/man1/TICCalculator.1 debian/topp/usr/share/man/man1/TICCalculator.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/TICCalculator.1.gz rm -f debian/topp/usr/share/man/man1/CVInspector.1 debian/topp/usr/share/man/man1/CVInspector.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/CVInspector.1.gz rm -f debian/topp/usr/share/man/man1/IsobaricAnalyzer.1 debian/topp/usr/share/man/man1/IsobaricAnalyzer.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/IsobaricAnalyzer.1.gz rm -f debian/topp/usr/share/man/man1/IDConflictResolver.1 debian/topp/usr/share/man/man1/IDConflictResolver.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/IDConflictResolver.1.gz rm -f debian/topp/usr/share/man/man1/TargetedFileConverter.1 debian/topp/usr/share/man/man1/TargetedFileConverter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/TargetedFileConverter.1.gz rm -f debian/topp/usr/share/man/man1/AccurateMassSearch.1 debian/topp/usr/share/man/man1/AccurateMassSearch.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/AccurateMassSearch.1.gz rm -f debian/topp/usr/share/man/man1/IDFilter.1 debian/topp/usr/share/man/man1/IDFilter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/IDFilter.1.gz rm -f debian/topp/usr/share/man/man1/ExternalCalibration.1 debian/topp/usr/share/man/man1/ExternalCalibration.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/ExternalCalibration.1.gz rm -f debian/topp/usr/share/man/man1/Decharger.1 debian/topp/usr/share/man/man1/Decharger.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/Decharger.1.gz rm -f debian/topp/usr/share/man/man1/OpenSwathFileSplitter.1 debian/topp/usr/share/man/man1/OpenSwathFileSplitter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/OpenSwathFileSplitter.1.gz rm -f debian/topp/usr/share/man/man1/PrecursorMassCorrector.1 debian/topp/usr/share/man/man1/PrecursorMassCorrector.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/PrecursorMassCorrector.1.gz rm -f debian/topp/usr/share/man/man1/DTAExtractor.1 debian/topp/usr/share/man/man1/DTAExtractor.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/DTAExtractor.1.gz rm -f debian/topp/usr/share/man/man1/FeatureFinderIdentification.1 debian/topp/usr/share/man/man1/FeatureFinderIdentification.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/FeatureFinderIdentification.1.gz rm -f debian/topp/usr/share/man/man1/OpenSwathWorkflow.1 debian/topp/usr/share/man/man1/OpenSwathWorkflow.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/OpenSwathWorkflow.1.gz rm -f debian/topp/usr/share/man/man1/MaRaClusterAdapter.1 debian/topp/usr/share/man/man1/MaRaClusterAdapter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MaRaClusterAdapter.1.gz rm -f debian/topp/usr/share/man/man1/HighResPrecursorMassCorrector.1 debian/topp/usr/share/man/man1/HighResPrecursorMassCorrector.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/HighResPrecursorMassCorrector.1.gz rm -f debian/topp/usr/share/man/man1/StaticModification.1 debian/topp/usr/share/man/man1/StaticModification.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/StaticModification.1.gz rm -f debian/topp/usr/share/man/man1/SimpleSearchEngine.1 debian/topp/usr/share/man/man1/SimpleSearchEngine.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/SimpleSearchEngine.1.gz rm -f debian/topp/usr/share/man/man1/FeatureFinderSuperHirn.1 debian/topp/usr/share/man/man1/FeatureFinderSuperHirn.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/FeatureFinderSuperHirn.1.gz rm -f debian/topp/usr/share/man/man1/IDFileConverter.1 debian/topp/usr/share/man/man1/IDFileConverter.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/IDFileConverter.1.gz rm -f debian/topp/usr/share/man/man1/MetaboliteAdductDecharger.1 debian/topp/usr/share/man/man1/MetaboliteAdductDecharger.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MetaboliteAdductDecharger.1.gz rm -f debian/topp/usr/share/man/man1/MSSimulator.1 debian/topp/usr/share/man/man1/MSSimulator.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/MSSimulator.1.gz rm -f debian/topp/usr/share/man/man1/DigestorMotif.1 debian/topp/usr/share/man/man1/DigestorMotif.1.gz ln -s topp.1.gz debian/topp/usr/share/man/man1/DigestorMotif.1.gz chmod a-x usr/share/doc/openms-doc/changelog usr/share/doc/openms-doc/changelog.Debian usr/share/doc/openms/tutorials/OpenMS_tutorial.pdf usr/share/doc/openms/tutorials/TOPP_tutorial.pdf usr/share/man/man7/openms-doc.7 gzip -9nf usr/share/doc/openms-doc/changelog usr/share/doc/openms-doc/changelog.Debian usr/share/doc/openms/tutorials/OpenMS_tutorial.pdf usr/share/doc/openms/tutorials/TOPP_tutorial.pdf usr/share/man/man7/openms-doc.7 cd '/build/reproducible-path/openms-2.6.0+cleaned1' dh_fixperms -O--buildsystem=cmake -O--no-parallel find debian/libopenms2.6.0 -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libopenms-dev -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/topp -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/openms-common -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/openms-doc -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/openms -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/openms ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libopenms2.6.0 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/openms/usr/share/doc -type f -a -true -a ! -regex 'debian/openms/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libopenms2.6.0/usr/share/doc -type f -a -true -a ! -regex 'debian/libopenms2.6.0/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/openms/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libopenms2.6.0/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/openms/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libopenms2.6.0/usr/share/man debian/libopenms2.6.0/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/openms -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/openms-common ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libopenms2.6.0 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libopenms2.6.0/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/topp ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/openms-common/usr/share/doc -type f -a -true -a ! -regex 'debian/openms-common/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/openms-common/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/openms-common/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/openms-common -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/topp/usr/share/doc -type f -a -true -a ! -regex 'debian/topp/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/topp/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/topp/usr/share/man debian/topp/usr/share/applications debian/topp/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/topp -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libopenms-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/topp/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/openms-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libopenms-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libopenms-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libopenms-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/openms-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/openms-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libopenms-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/openms-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/openms-doc/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libopenms-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/openms-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libopenms-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=cmake -O--no-parallel dh_missing: warning: usr/lib/libOpenMS.so.2.6.0 exists in debian/tmp but is not installed to anywhere (related file: "debian/tmp/usr/lib/x86_64-linux-gnu/libOpenMS.so.2.6.0") dh_missing: warning: usr/lib/libOpenMS_GUI.so.2.6.0 exists in debian/tmp but is not installed to anywhere (related file: "debian/tmp/usr/lib/x86_64-linux-gnu/libOpenMS_GUI.so.2.6.0") dh_missing: warning: usr/lib/libOpenSwathAlgo.so.2.6.0 exists in debian/tmp but is not installed to anywhere (related file: "debian/tmp/usr/lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0") dh_missing: warning: usr/lib/libSuperHirn.so.2.6.0 exists in debian/tmp but is not installed to anywhere (related file: "debian/tmp/usr/lib/x86_64-linux-gnu/libSuperHirn.so.2.6.0") dh_missing: warning: usr/lib/x86_64-linux-gnu/libOpenMS.so exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/x86_64-linux-gnu/libOpenMS_GUI.so exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/x86_64-linux-gnu/libOpenSwathAlgo.so exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/lib/x86_64-linux-gnu/libSuperHirn.so exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/openms/THIRDPARTY/ReadMe.txt exists in debian/tmp but is not installed to anywhere While detecting missing files, dh_missing noted some files with a similar name to those that were missing. This warning /might/ be resolved by replacing references to the missing files with the similarly named ones that dh_missing found - assuming the content is identical. As an example, you might want to replace: * debian/tmp/usr/lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 with: * usr/lib/libOpenMS.so.2.6.0 in a file in debian/ or as argument to one of the dh_* tools called from debian/rules. (Note it is possible the paths are not used verbatim but instead directories containing or globs matching them are used instead) Alternatively, add the missing file to debian/not-installed if it cannot and should not be used. The following debhelper tools have reported what they installed (with files per package) * dh_install: libopenms-dev (2), libopenms2.6.0 (4), openms (0), openms-common (11), openms-doc (5), topp (185) * dh_installdocs: libopenms-dev (0), libopenms2.6.0 (0), openms (1), openms-common (0), openms-doc (0), topp (0) * dh_installexamples: libopenms-dev (0), libopenms2.6.0 (0), openms (0), openms-common (0), openms-doc (0), topp (0) * dh_installinfo: libopenms-dev (0), libopenms2.6.0 (0), openms (0), openms-common (0), openms-doc (0), topp (0) * dh_installman: libopenms-dev (0), libopenms2.6.0 (1), openms (1), openms-common (1), openms-doc (1), topp (1) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.md.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built If the omission is intentional or no other helper can take care of this consider adding the paths to debian/not-installed. Remember to be careful with paths containing "x86_64-linux-gnu", where you might need to use a wildcard or (assuming compat 13+) e.g. ${DEB_HOST_MULTIARCH} in debian/not-installed to ensure it works on all architectures (see #961104). dh_dwz -O--buildsystem=cmake -O--no-parallel install -m0755 -d debian/libopenms2.6.0/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/libopenms2.6.0/usr/lib/debug/.dwz/x86_64-linux-gnu/libopenms2.6.0.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/libopenms2.6.0.debug -- debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libOpenMS_GUI.so.2.6.0 debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libSuperHirn.so.2.6.0 install -m0755 -d debian/topp/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/topp/usr/lib/debug/.dwz/x86_64-linux-gnu/topp.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/topp.debug -- debian/topp/usr/bin/AccurateMassSearch debian/topp/usr/bin/AssayGeneratorMetabo debian/topp/usr/bin/BaselineFilter debian/topp/usr/bin/CVInspector debian/topp/usr/bin/ClusterMassTraces debian/topp/usr/bin/ClusterMassTracesByPrecursor debian/topp/usr/bin/CometAdapter debian/topp/usr/bin/CompNovo debian/topp/usr/bin/CompNovoCID debian/topp/usr/bin/ConsensusID debian/topp/usr/bin/ConsensusMapNormalizer debian/topp/usr/bin/CruxAdapter debian/topp/usr/bin/DTAExtractor debian/topp/usr/bin/DatabaseFilter debian/topp/usr/bin/DatabaseSuitability debian/topp/usr/bin/DeMeanderize debian/topp/usr/bin/Decharger debian/topp/usr/bin/DecoyDatabase debian/topp/usr/bin/Digestor debian/topp/usr/bin/DigestorMotif debian/topp/usr/bin/EICExtractor debian/topp/usr/bin/ERPairFinder debian/topp/usr/bin/Epifany debian/topp/usr/bin/ExecutePipeline debian/topp/usr/bin/ExternalCalibration debian/topp/usr/bin/FFEval debian/topp/usr/bin/FalseDiscoveryRate debian/topp/usr/bin/FeatureFinderCentroided debian/topp/usr/bin/FeatureFinderIdentification debian/topp/usr/bin/FeatureFinderIsotopeWavelet debian/topp/usr/bin/FeatureFinderMRM debian/topp/usr/bin/FeatureFinderMetabo debian/topp/usr/bin/FeatureFinderMetaboIdent debian/topp/usr/bin/FeatureFinderMultiplex debian/topp/usr/bin/FeatureFinderSuperHirn debian/topp/usr/bin/FeatureLinkerLabeled debian/topp/usr/bin/FeatureLinkerUnlabeled debian/topp/usr/bin/FeatureLinkerUnlabeledKD debian/topp/usr/bin/FeatureLinkerUnlabeledQT debian/topp/usr/bin/FidoAdapter debian/topp/usr/bin/FileConverter debian/topp/usr/bin/FileFilter debian/topp/usr/bin/FileInfo debian/topp/usr/bin/FileMerger debian/topp/usr/bin/FuzzyDiff debian/topp/usr/bin/GNPSExport debian/topp/usr/bin/GenericWrapper debian/topp/usr/bin/HighResPrecursorMassCorrector debian/topp/usr/bin/IDConflictResolver debian/topp/usr/bin/IDDecoyProbability debian/topp/usr/bin/IDExtractor debian/topp/usr/bin/IDFileConverter debian/topp/usr/bin/IDFilter debian/topp/usr/bin/IDMapper debian/topp/usr/bin/IDMassAccuracy debian/topp/usr/bin/IDMerger debian/topp/usr/bin/IDPosteriorErrorProbability debian/topp/usr/bin/IDRTCalibration debian/topp/usr/bin/IDRipper debian/topp/usr/bin/IDScoreSwitcher debian/topp/usr/bin/IDSplitter debian/topp/usr/bin/INIFileEditor debian/topp/usr/bin/INIUpdater debian/topp/usr/bin/ImageCreator debian/topp/usr/bin/InclusionExclusionListCreator debian/topp/usr/bin/InspectAdapter debian/topp/usr/bin/InternalCalibration debian/topp/usr/bin/IsobaricAnalyzer debian/topp/usr/bin/LabeledEval debian/topp/usr/bin/LuciphorAdapter debian/topp/usr/bin/MRMMapper debian/topp/usr/bin/MRMPairFinder debian/topp/usr/bin/MRMTransitionGroupPicker debian/topp/usr/bin/MSFraggerAdapter debian/topp/usr/bin/MSGFPlusAdapter debian/topp/usr/bin/MSSimulator debian/topp/usr/bin/MSstatsConverter debian/topp/usr/bin/MaRaClusterAdapter debian/topp/usr/bin/MapAlignerIdentification debian/topp/usr/bin/MapAlignerPoseClustering debian/topp/usr/bin/MapAlignerSpectrum debian/topp/usr/bin/MapAlignerTreeGuided debian/topp/usr/bin/MapNormalizer debian/topp/usr/bin/MapRTTransformer debian/topp/usr/bin/MapStatistics debian/topp/usr/bin/MascotAdapter debian/topp/usr/bin/MascotAdapterOnline debian/topp/usr/bin/MassCalculator debian/topp/usr/bin/MassTraceExtractor debian/topp/usr/bin/MetaProSIP debian/topp/usr/bin/MetaboliteAdductDecharger debian/topp/usr/bin/MetaboliteSpectralMatcher debian/topp/usr/bin/MultiplexResolver debian/topp/usr/bin/MyriMatchAdapter debian/topp/usr/bin/MzMLSplitter debian/topp/usr/bin/MzTabExporter debian/topp/usr/bin/NoiseFilterGaussian debian/topp/usr/bin/NoiseFilterSGolay debian/topp/usr/bin/NovorAdapter debian/topp/usr/bin/NucleicAcidSearchEngine debian/topp/usr/bin/OMSSAAdapter debian/topp/usr/bin/OpenMSInfo debian/topp/usr/bin/OpenPepXL debian/topp/usr/bin/OpenPepXLLF debian/topp/usr/bin/OpenSwathAnalyzer debian/topp/usr/bin/OpenSwathAssayGenerator debian/topp/usr/bin/OpenSwathChromatogramExtractor debian/topp/usr/bin/OpenSwathConfidenceScoring debian/topp/usr/bin/OpenSwathDIAPreScoring debian/topp/usr/bin/OpenSwathDecoyGenerator debian/topp/usr/bin/OpenSwathFeatureXMLToTSV debian/topp/usr/bin/OpenSwathFileSplitter debian/topp/usr/bin/OpenSwathMzMLFileCacher debian/topp/usr/bin/OpenSwathRTNormalizer debian/topp/usr/bin/OpenSwathRewriteToFeatureXML debian/topp/usr/bin/OpenSwathWorkflow debian/topp/usr/bin/PSMFeatureExtractor debian/topp/usr/bin/PTModel debian/topp/usr/bin/PTPredict debian/topp/usr/bin/PeakPickerHiRes debian/topp/usr/bin/PeakPickerIterative debian/topp/usr/bin/PeakPickerWavelet debian/topp/usr/bin/PepNovoAdapter debian/topp/usr/bin/PeptideIndexer debian/topp/usr/bin/PercolatorAdapter debian/topp/usr/bin/PhosphoScoring debian/topp/usr/bin/PrecursorIonSelector debian/topp/usr/bin/PrecursorMassCorrector debian/topp/usr/bin/ProteinInference debian/topp/usr/bin/ProteinQuantifier debian/topp/usr/bin/ProteinResolver debian/topp/usr/bin/ProteomicsLFQ debian/topp/usr/bin/QCCalculator debian/topp/usr/bin/QCEmbedder debian/topp/usr/bin/QCExporter debian/topp/usr/bin/QCExtractor debian/topp/usr/bin/QCImporter debian/topp/usr/bin/QCMerger debian/topp/usr/bin/QCShrinker debian/topp/usr/bin/QualityControl debian/topp/usr/bin/RNADigestor debian/topp/usr/bin/RNAMassCalculator debian/topp/usr/bin/RNPxlSearch debian/topp/usr/bin/RNPxlXICFilter debian/topp/usr/bin/RTEvaluation debian/topp/usr/bin/RTModel debian/topp/usr/bin/RTPredict debian/topp/usr/bin/Resampler debian/topp/usr/bin/SeedListGenerator debian/topp/usr/bin/SemanticValidator debian/topp/usr/bin/SequenceCoverageCalculator debian/topp/usr/bin/SimpleSearchEngine debian/topp/usr/bin/SiriusAdapter debian/topp/usr/bin/SpecLibCreator debian/topp/usr/bin/SpecLibSearcher debian/topp/usr/bin/SpectraFilterBernNorm debian/topp/usr/bin/SpectraFilterMarkerMower debian/topp/usr/bin/SpectraFilterNLargest debian/topp/usr/bin/SpectraFilterNormalizer debian/topp/usr/bin/SpectraFilterParentPeakMower debian/topp/usr/bin/SpectraFilterScaler debian/topp/usr/bin/SpectraFilterSqrtMower debian/topp/usr/bin/SpectraFilterThresholdMower debian/topp/usr/bin/SpectraFilterWindowMower debian/topp/usr/bin/SpectraMerger debian/topp/usr/bin/SpectraSTSearchAdapter debian/topp/usr/bin/StaticModification debian/topp/usr/bin/SvmTheoreticalSpectrumGeneratorTrainer debian/topp/usr/bin/SwathWizard debian/topp/usr/bin/TICCalculator debian/topp/usr/bin/TOFCalibration debian/topp/usr/bin/TOPPAS debian/topp/usr/bin/TOPPView debian/topp/usr/bin/TargetedFileConverter debian/topp/usr/bin/TextExporter debian/topp/usr/bin/TransformationEvaluation debian/topp/usr/bin/XFDR debian/topp/usr/bin/XMLValidator debian/topp/usr/bin/XTandemAdapter objcopy --compress-debug-sections debian/topp/usr/lib/debug/.dwz/x86_64-linux-gnu/topp.debug chmod 0644 -- debian/topp/usr/lib/debug/.dwz/x86_64-linux-gnu/topp.debug chown 0:0 -- debian/topp/usr/lib/debug/.dwz/x86_64-linux-gnu/topp.debug dwz: debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libOpenMS.so.2.6.0: DWARF compression not beneficial - old size 350398666 new size 352021439 objcopy --compress-debug-sections debian/libopenms2.6.0/usr/lib/debug/.dwz/x86_64-linux-gnu/libopenms2.6.0.debug chmod 0644 -- debian/libopenms2.6.0/usr/lib/debug/.dwz/x86_64-linux-gnu/libopenms2.6.0.debug chown 0:0 -- debian/libopenms2.6.0/usr/lib/debug/.dwz/x86_64-linux-gnu/libopenms2.6.0.debug dh_strip -O--buildsystem=cmake -O--no-parallel install -m0755 -d debian/.debhelper/libopenms2.6.0/dbgsym-root/usr/lib/debug/.build-id/29 objcopy --only-keep-debug --compress-debug-sections debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libOpenMS_GUI.so.2.6.0 debian/.debhelper/libopenms2.6.0/dbgsym-root/usr/lib/debug/.build-id/29/abb5acff265a751922e0c725947c15e101fb8a.debug install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/c2 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/PeakPickerWavelet debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/c2/948b474dba0b2ecee94bbd113aa321f3757611.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/c2/948b474dba0b2ecee94bbd113aa321f3757611.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/c2/948b474dba0b2ecee94bbd113aa321f3757611.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/PeakPickerWavelet objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/c2/948b474dba0b2ecee94bbd113aa321f3757611.debug debian/topp/usr/bin/PeakPickerWavelet install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/25 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/OpenSwathConfidenceScoring debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/25/ba25f3502d64fb63d5db0869e984db799a91ec.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/25/ba25f3502d64fb63d5db0869e984db799a91ec.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/25/ba25f3502d64fb63d5db0869e984db799a91ec.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/OpenSwathConfidenceScoring objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/25/ba25f3502d64fb63d5db0869e984db799a91ec.debug debian/topp/usr/bin/OpenSwathConfidenceScoring install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/27 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/OpenSwathChromatogramExtractor debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/27/5a64b652475c5a0bc0c229154d58d5d8f94e13.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/27/5a64b652475c5a0bc0c229154d58d5d8f94e13.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/27/5a64b652475c5a0bc0c229154d58d5d8f94e13.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/OpenSwathChromatogramExtractor objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/27/5a64b652475c5a0bc0c229154d58d5d8f94e13.debug debian/topp/usr/bin/OpenSwathChromatogramExtractor install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/9c objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/MapStatistics debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/9c/73b0807de95929974ca49a9c9092181f9dc352.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/9c/73b0807de95929974ca49a9c9092181f9dc352.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/9c/73b0807de95929974ca49a9c9092181f9dc352.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/MapStatistics objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/9c/73b0807de95929974ca49a9c9092181f9dc352.debug debian/topp/usr/bin/MapStatistics install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6e objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/DigestorMotif debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6e/565e77c0899e05c47336055e2d1c1e4d44652c.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6e/565e77c0899e05c47336055e2d1c1e4d44652c.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6e/565e77c0899e05c47336055e2d1c1e4d44652c.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/DigestorMotif objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6e/565e77c0899e05c47336055e2d1c1e4d44652c.debug debian/topp/usr/bin/DigestorMotif install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/de objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/OpenSwathDecoyGenerator debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/de/72ccc8445f3491057554a43427f635ddb40225.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/de/72ccc8445f3491057554a43427f635ddb40225.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/de/72ccc8445f3491057554a43427f635ddb40225.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/OpenSwathDecoyGenerator objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/de/72ccc8445f3491057554a43427f635ddb40225.debug debian/topp/usr/bin/OpenSwathDecoyGenerator install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/9e objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/IDDecoyProbability debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/9e/2e27141f5be12031cdcd67a82cf61322a817b7.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/9e/2e27141f5be12031cdcd67a82cf61322a817b7.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/9e/2e27141f5be12031cdcd67a82cf61322a817b7.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/IDDecoyProbability objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/9e/2e27141f5be12031cdcd67a82cf61322a817b7.debug debian/topp/usr/bin/IDDecoyProbability install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/b1 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/SimpleSearchEngine debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/b1/023f9eb0d10054b0b06040cb71799fca90c8cb.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/b1/023f9eb0d10054b0b06040cb71799fca90c8cb.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/b1/023f9eb0d10054b0b06040cb71799fca90c8cb.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/SimpleSearchEngine objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/b1/023f9eb0d10054b0b06040cb71799fca90c8cb.debug debian/topp/usr/bin/SimpleSearchEngine install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/89 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/SpectraFilterBernNorm debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/89/5d1c3220199e9c80cfee4be984b98352bee80c.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/89/5d1c3220199e9c80cfee4be984b98352bee80c.debug chown 0:0 -- 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--add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ec/32a36222ab4568d30761977787c9e971677eee.debug debian/topp/usr/bin/ConsensusID install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/27 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/NoiseFilterSGolay debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/27/94b104d62995d421be31257e121e4b71eba456.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/27/94b104d62995d421be31257e121e4b71eba456.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/27/94b104d62995d421be31257e121e4b71eba456.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/NoiseFilterSGolay objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/27/94b104d62995d421be31257e121e4b71eba456.debug debian/topp/usr/bin/NoiseFilterSGolay install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f3 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/FeatureLinkerUnlabeledQT debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f3/64d44ae7929dbf3caf957c41f8a54719fa8994.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f3/64d44ae7929dbf3caf957c41f8a54719fa8994.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f3/64d44ae7929dbf3caf957c41f8a54719fa8994.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/FeatureLinkerUnlabeledQT objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f3/64d44ae7929dbf3caf957c41f8a54719fa8994.debug debian/topp/usr/bin/FeatureLinkerUnlabeledQT install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/eb objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/FileInfo 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debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/a6/d7c82f39efb177af5ee06ca371f1f265a471ac.debug debian/topp/usr/bin/SpectraMerger install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/09 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/FileMerger debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/09/671375f717469c400c5ba7fc621649ba1477a3.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/09/671375f717469c400c5ba7fc621649ba1477a3.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/09/671375f717469c400c5ba7fc621649ba1477a3.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/FileMerger objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/09/671375f717469c400c5ba7fc621649ba1477a3.debug debian/topp/usr/bin/FileMerger install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/be objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/MSFraggerAdapter debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/be/7825ec569531dab8feece444a77d03e2a825a9.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/be/7825ec569531dab8feece444a77d03e2a825a9.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/be/7825ec569531dab8feece444a77d03e2a825a9.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/MSFraggerAdapter objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/be/7825ec569531dab8feece444a77d03e2a825a9.debug debian/topp/usr/bin/MSFraggerAdapter install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/df objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/MRMMapper debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/df/9f3f996ba2b75cc9a228520902f5e3c36b7ddc.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/df/9f3f996ba2b75cc9a228520902f5e3c36b7ddc.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/df/9f3f996ba2b75cc9a228520902f5e3c36b7ddc.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/MRMMapper objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/df/9f3f996ba2b75cc9a228520902f5e3c36b7ddc.debug debian/topp/usr/bin/MRMMapper install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/55 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/MultiplexResolver debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/55/a896bdf9a8161205674c1467c2290925597d16.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/55/a896bdf9a8161205674c1467c2290925597d16.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/55/a896bdf9a8161205674c1467c2290925597d16.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/MultiplexResolver objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/55/a896bdf9a8161205674c1467c2290925597d16.debug debian/topp/usr/bin/MultiplexResolver install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/1d objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/INIFileEditor debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/1d/e714e350aa4e815d97a1a937fd3919fbd3f9c0.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/1d/e714e350aa4e815d97a1a937fd3919fbd3f9c0.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/1d/e714e350aa4e815d97a1a937fd3919fbd3f9c0.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/INIFileEditor objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/1d/e714e350aa4e815d97a1a937fd3919fbd3f9c0.debug debian/topp/usr/bin/INIFileEditor install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e5 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/OpenPepXLLF debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e5/9276ca653e5fd651eae7a05c14e66ba0db2ab8.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e5/9276ca653e5fd651eae7a05c14e66ba0db2ab8.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e5/9276ca653e5fd651eae7a05c14e66ba0db2ab8.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/OpenPepXLLF objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e5/9276ca653e5fd651eae7a05c14e66ba0db2ab8.debug debian/topp/usr/bin/OpenPepXLLF install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/01 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/IDPosteriorErrorProbability debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/01/cb1be09e72f50714bab7281c969848562468d8.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/01/cb1be09e72f50714bab7281c969848562468d8.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/01/cb1be09e72f50714bab7281c969848562468d8.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/IDPosteriorErrorProbability objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/01/cb1be09e72f50714bab7281c969848562468d8.debug debian/topp/usr/bin/IDPosteriorErrorProbability install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/0a objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/ProteomicsLFQ debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/0a/1ebc171e1704af79b2cb575f0bfe344ec69dbf.debug chmod 0644 -- debian/.debhelper/libopenms2.6.0/dbgsym-root/usr/lib/debug/.build-id/29/abb5acff265a751922e0c725947c15e101fb8a.debug chown 0:0 -- debian/.debhelper/libopenms2.6.0/dbgsym-root/usr/lib/debug/.build-id/29/abb5acff265a751922e0c725947c15e101fb8a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libOpenMS_GUI.so.2.6.0 objcopy --add-gnu-debuglink debian/.debhelper/libopenms2.6.0/dbgsym-root/usr/lib/debug/.build-id/29/abb5acff265a751922e0c725947c15e101fb8a.debug debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libOpenMS_GUI.so.2.6.0 install -m0755 -d debian/.debhelper/libopenms2.6.0/dbgsym-root/usr/lib/debug/.build-id/42 objcopy --only-keep-debug --compress-debug-sections debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 debian/.debhelper/libopenms2.6.0/dbgsym-root/usr/lib/debug/.build-id/42/247237f3a1fd7a11e264c927fc45e5fa113985.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/0a/1ebc171e1704af79b2cb575f0bfe344ec69dbf.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/0a/1ebc171e1704af79b2cb575f0bfe344ec69dbf.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/ProteomicsLFQ chmod 0644 -- debian/.debhelper/libopenms2.6.0/dbgsym-root/usr/lib/debug/.build-id/42/247237f3a1fd7a11e264c927fc45e5fa113985.debug chown 0:0 -- debian/.debhelper/libopenms2.6.0/dbgsym-root/usr/lib/debug/.build-id/42/247237f3a1fd7a11e264c927fc45e5fa113985.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 objcopy --add-gnu-debuglink debian/.debhelper/libopenms2.6.0/dbgsym-root/usr/lib/debug/.build-id/42/247237f3a1fd7a11e264c927fc45e5fa113985.debug debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/0a/1ebc171e1704af79b2cb575f0bfe344ec69dbf.debug debian/topp/usr/bin/ProteomicsLFQ install -m0755 -d debian/.debhelper/libopenms2.6.0/dbgsym-root/usr/lib/debug/.build-id/d4 objcopy --only-keep-debug --compress-debug-sections debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libSuperHirn.so.2.6.0 debian/.debhelper/libopenms2.6.0/dbgsym-root/usr/lib/debug/.build-id/d4/7664abade981db842a4c13b37a287bb7b86176.debug install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/bc objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/PepNovoAdapter debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/bc/c824fd09022a0fde6683e2cf80a9e5586d5bd7.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/bc/c824fd09022a0fde6683e2cf80a9e5586d5bd7.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/bc/c824fd09022a0fde6683e2cf80a9e5586d5bd7.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/PepNovoAdapter objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/bc/c824fd09022a0fde6683e2cf80a9e5586d5bd7.debug debian/topp/usr/bin/PepNovoAdapter install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/17 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/FeatureFinderIsotopeWavelet debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/17/ea57b482767ff950f1c9551903fc794de009eb.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/17/ea57b482767ff950f1c9551903fc794de009eb.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/17/ea57b482767ff950f1c9551903fc794de009eb.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/FeatureFinderIsotopeWavelet objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/17/ea57b482767ff950f1c9551903fc794de009eb.debug debian/topp/usr/bin/FeatureFinderIsotopeWavelet install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e0 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/StaticModification debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e0/5870c62e5d5947de2864d05cb7ed5ea7d258f0.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e0/5870c62e5d5947de2864d05cb7ed5ea7d258f0.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e0/5870c62e5d5947de2864d05cb7ed5ea7d258f0.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/StaticModification objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e0/5870c62e5d5947de2864d05cb7ed5ea7d258f0.debug debian/topp/usr/bin/StaticModification install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/91 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/InternalCalibration debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/91/1f1a96dfff2210d050425c964707ccd0ad1d43.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/91/1f1a96dfff2210d050425c964707ccd0ad1d43.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/91/1f1a96dfff2210d050425c964707ccd0ad1d43.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/InternalCalibration objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/91/1f1a96dfff2210d050425c964707ccd0ad1d43.debug debian/topp/usr/bin/InternalCalibration install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/5b objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/FidoAdapter debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/5b/8a6683377a65ab4756e55528b60f42f35e5d67.debug chmod 0644 -- debian/.debhelper/libopenms2.6.0/dbgsym-root/usr/lib/debug/.build-id/d4/7664abade981db842a4c13b37a287bb7b86176.debug chown 0:0 -- debian/.debhelper/libopenms2.6.0/dbgsym-root/usr/lib/debug/.build-id/d4/7664abade981db842a4c13b37a287bb7b86176.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libSuperHirn.so.2.6.0 objcopy --add-gnu-debuglink debian/.debhelper/libopenms2.6.0/dbgsym-root/usr/lib/debug/.build-id/d4/7664abade981db842a4c13b37a287bb7b86176.debug debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libSuperHirn.so.2.6.0 install -m0755 -d debian/.debhelper/libopenms2.6.0/dbgsym-root/usr/lib/debug/.build-id/7d objcopy --only-keep-debug --compress-debug-sections debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 debian/.debhelper/libopenms2.6.0/dbgsym-root/usr/lib/debug/.build-id/7d/f99e940a6fc1cc5310220aaf4b4493be3ef51c.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/5b/8a6683377a65ab4756e55528b60f42f35e5d67.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/5b/8a6683377a65ab4756e55528b60f42f35e5d67.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/FidoAdapter objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/5b/8a6683377a65ab4756e55528b60f42f35e5d67.debug debian/topp/usr/bin/FidoAdapter install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d0 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/DecoyDatabase debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d0/dd1f242ca3d38b5352414db9b53bfea134b048.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d0/dd1f242ca3d38b5352414db9b53bfea134b048.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d0/dd1f242ca3d38b5352414db9b53bfea134b048.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/DecoyDatabase objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d0/dd1f242ca3d38b5352414db9b53bfea134b048.debug debian/topp/usr/bin/DecoyDatabase install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/36 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/BaselineFilter debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/36/28f043360e930eff4f2e472cecc509f33f7be2.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/36/28f043360e930eff4f2e472cecc509f33f7be2.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/36/28f043360e930eff4f2e472cecc509f33f7be2.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/BaselineFilter objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/36/28f043360e930eff4f2e472cecc509f33f7be2.debug debian/topp/usr/bin/BaselineFilter install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/fc objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/ImageCreator debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/fc/18f954b1518c4816964815fe440ebdf17f3e5d.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/fc/18f954b1518c4816964815fe440ebdf17f3e5d.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/fc/18f954b1518c4816964815fe440ebdf17f3e5d.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/ImageCreator objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/fc/18f954b1518c4816964815fe440ebdf17f3e5d.debug debian/topp/usr/bin/ImageCreator install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/bd objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/QualityControl debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/bd/269f76fe48abf287c1303098bf911c8f2b2acc.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/bd/269f76fe48abf287c1303098bf911c8f2b2acc.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/bd/269f76fe48abf287c1303098bf911c8f2b2acc.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/QualityControl objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/bd/269f76fe48abf287c1303098bf911c8f2b2acc.debug debian/topp/usr/bin/QualityControl install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6a objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/IDExtractor debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6a/f49657417ee387eb595241012180d34beb0200.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6a/f49657417ee387eb595241012180d34beb0200.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6a/f49657417ee387eb595241012180d34beb0200.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/IDExtractor objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6a/f49657417ee387eb595241012180d34beb0200.debug debian/topp/usr/bin/IDExtractor install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/b3 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/NoiseFilterGaussian debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/b3/f8d206ca7817c07f1f7ebb01b263402b96b908.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/b3/f8d206ca7817c07f1f7ebb01b263402b96b908.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/b3/f8d206ca7817c07f1f7ebb01b263402b96b908.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/NoiseFilterGaussian objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/b3/f8d206ca7817c07f1f7ebb01b263402b96b908.debug debian/topp/usr/bin/NoiseFilterGaussian install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/35 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/MapAlignerTreeGuided debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/35/50ca922ba583f2c3c1d453de76fefe82456648.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/35/50ca922ba583f2c3c1d453de76fefe82456648.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/35/50ca922ba583f2c3c1d453de76fefe82456648.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/MapAlignerTreeGuided objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/35/50ca922ba583f2c3c1d453de76fefe82456648.debug debian/topp/usr/bin/MapAlignerTreeGuided install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d5 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/IDFileConverter debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d5/932f2b06486e878e0caa318b75d83b92fb8a86.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d5/932f2b06486e878e0caa318b75d83b92fb8a86.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d5/932f2b06486e878e0caa318b75d83b92fb8a86.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/IDFileConverter objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d5/932f2b06486e878e0caa318b75d83b92fb8a86.debug debian/topp/usr/bin/IDFileConverter install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/50 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/DatabaseSuitability debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/50/420e8e33e5ed1db602be145fc0a097d9686641.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/50/420e8e33e5ed1db602be145fc0a097d9686641.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/50/420e8e33e5ed1db602be145fc0a097d9686641.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/DatabaseSuitability objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/50/420e8e33e5ed1db602be145fc0a097d9686641.debug debian/topp/usr/bin/DatabaseSuitability install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/42 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/AssayGeneratorMetabo debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/42/72f893dd303e2adaa9eb18c7ae63a5fda6c44f.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/42/72f893dd303e2adaa9eb18c7ae63a5fda6c44f.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/42/72f893dd303e2adaa9eb18c7ae63a5fda6c44f.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/AssayGeneratorMetabo objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/42/72f893dd303e2adaa9eb18c7ae63a5fda6c44f.debug debian/topp/usr/bin/AssayGeneratorMetabo install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/89 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/DTAExtractor debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/89/9c2cd4baac843838eb2d59dbd1dfa0e3a03ae7.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/89/9c2cd4baac843838eb2d59dbd1dfa0e3a03ae7.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/89/9c2cd4baac843838eb2d59dbd1dfa0e3a03ae7.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/DTAExtractor objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/89/9c2cd4baac843838eb2d59dbd1dfa0e3a03ae7.debug debian/topp/usr/bin/DTAExtractor install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/4b objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/OpenSwathWorkflow debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/4b/b635fb4dd125cbcf4f84e376b1b46885da93b2.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/4b/b635fb4dd125cbcf4f84e376b1b46885da93b2.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/4b/b635fb4dd125cbcf4f84e376b1b46885da93b2.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/OpenSwathWorkflow objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/4b/b635fb4dd125cbcf4f84e376b1b46885da93b2.debug debian/topp/usr/bin/OpenSwathWorkflow install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/76 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/SwathWizard debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/76/e3d68a39b4944a4c91e3dc883696ece05ebcc9.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/76/e3d68a39b4944a4c91e3dc883696ece05ebcc9.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/76/e3d68a39b4944a4c91e3dc883696ece05ebcc9.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/SwathWizard objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/76/e3d68a39b4944a4c91e3dc883696ece05ebcc9.debug debian/topp/usr/bin/SwathWizard install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/00 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/SpectraSTSearchAdapter debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/00/801016d79931fcdb40bf4017394c1265f3c87c.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/00/801016d79931fcdb40bf4017394c1265f3c87c.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/00/801016d79931fcdb40bf4017394c1265f3c87c.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/SpectraSTSearchAdapter objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/00/801016d79931fcdb40bf4017394c1265f3c87c.debug debian/topp/usr/bin/SpectraSTSearchAdapter install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/37 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/TOPPAS debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/37/f8814004b020f10a2743e092d0da4a7b606478.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/37/f8814004b020f10a2743e092d0da4a7b606478.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/37/f8814004b020f10a2743e092d0da4a7b606478.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/TOPPAS objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/37/f8814004b020f10a2743e092d0da4a7b606478.debug debian/topp/usr/bin/TOPPAS install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e0 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/XFDR debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e0/3c8427f2643d73d3f29b6500ed4ef2f86fe5dd.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e0/3c8427f2643d73d3f29b6500ed4ef2f86fe5dd.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e0/3c8427f2643d73d3f29b6500ed4ef2f86fe5dd.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/XFDR objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e0/3c8427f2643d73d3f29b6500ed4ef2f86fe5dd.debug debian/topp/usr/bin/XFDR install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/2a objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/TOFCalibration debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/2a/aa09a2678bc2851c8f9a178d57cd6609570ead.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/2a/aa09a2678bc2851c8f9a178d57cd6609570ead.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/2a/aa09a2678bc2851c8f9a178d57cd6609570ead.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/TOFCalibration objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/2a/aa09a2678bc2851c8f9a178d57cd6609570ead.debug debian/topp/usr/bin/TOFCalibration install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/fb objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/MRMTransitionGroupPicker debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/fb/9371d3fa6ba8cfdd48a78e09c7139d682faf5f.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/fb/9371d3fa6ba8cfdd48a78e09c7139d682faf5f.debug chown 0:0 -- 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objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/2e/85d7257fb4994783414c4f4b9d65546d789ddc.debug debian/topp/usr/bin/FalseDiscoveryRate install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/03 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/MetaboliteSpectralMatcher debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/03/e887a98f791e33bd2cf1740ba450c1fd8e6de5.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/03/e887a98f791e33bd2cf1740ba450c1fd8e6de5.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/03/e887a98f791e33bd2cf1740ba450c1fd8e6de5.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/MetaboliteSpectralMatcher objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/03/e887a98f791e33bd2cf1740ba450c1fd8e6de5.debug debian/topp/usr/bin/MetaboliteSpectralMatcher install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/17 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/LabeledEval debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/17/71330de5d9dba10e841f81e6a0de414ac6c9cb.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/17/71330de5d9dba10e841f81e6a0de414ac6c9cb.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/17/71330de5d9dba10e841f81e6a0de414ac6c9cb.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/LabeledEval objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/17/71330de5d9dba10e841f81e6a0de414ac6c9cb.debug debian/topp/usr/bin/LabeledEval install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/33 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/RNAMassCalculator 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debian/topp/usr/bin/MSstatsConverter install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/05 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/OpenSwathFeatureXMLToTSV debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/05/5d50d18efe2e8af094a17a153157365823f830.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/05/5d50d18efe2e8af094a17a153157365823f830.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/05/5d50d18efe2e8af094a17a153157365823f830.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/OpenSwathFeatureXMLToTSV objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/05/5d50d18efe2e8af094a17a153157365823f830.debug debian/topp/usr/bin/OpenSwathFeatureXMLToTSV install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/58 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/MSSimulator debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/58/cfe9fe027b2fceafc3a15092b51aee826ab97f.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/58/cfe9fe027b2fceafc3a15092b51aee826ab97f.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/58/cfe9fe027b2fceafc3a15092b51aee826ab97f.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/MSSimulator objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/58/cfe9fe027b2fceafc3a15092b51aee826ab97f.debug debian/topp/usr/bin/MSSimulator install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/59 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/MaRaClusterAdapter debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/59/a9788c796d3d6f3e53da04f79444df25522482.debug chmod 0644 -- 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--add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/bd/7d4708933a7bf0780766a8cd561876387a8bfe.debug debian/topp/usr/bin/OpenSwathRTNormalizer install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/1d objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/MyriMatchAdapter debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/1d/719a8d41182d4cea399c940bdb78afa7d727ec.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/1d/719a8d41182d4cea399c940bdb78afa7d727ec.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/1d/719a8d41182d4cea399c940bdb78afa7d727ec.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/MyriMatchAdapter objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/1d/719a8d41182d4cea399c940bdb78afa7d727ec.debug debian/topp/usr/bin/MyriMatchAdapter install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/63 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/MapAlignerPoseClustering debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/63/7b21088574bf40c3bd980fa6d405d78eb94829.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/63/7b21088574bf40c3bd980fa6d405d78eb94829.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/63/7b21088574bf40c3bd980fa6d405d78eb94829.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/MapAlignerPoseClustering objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/63/7b21088574bf40c3bd980fa6d405d78eb94829.debug debian/topp/usr/bin/MapAlignerPoseClustering install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ad objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/MetaboliteAdductDecharger 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debian/topp/usr/bin/XMLValidator install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/cd objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/OpenMSInfo debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/cd/b0dfb934f972d0de64a7362476b4a3deca8212.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/cd/b0dfb934f972d0de64a7362476b4a3deca8212.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/cd/b0dfb934f972d0de64a7362476b4a3deca8212.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/OpenMSInfo objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/cd/b0dfb934f972d0de64a7362476b4a3deca8212.debug debian/topp/usr/bin/OpenMSInfo install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/92 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/FeatureFinderMetaboIdent 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strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/IDScoreSwitcher objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/10/5e3fcdbe24162e7ac24d5be69b4d8a682c5612.debug debian/topp/usr/bin/IDScoreSwitcher install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ce objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/Decharger debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ce/14969481dd70aba56d35db286c6ecb8477c5f3.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ce/14969481dd70aba56d35db286c6ecb8477c5f3.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ce/14969481dd70aba56d35db286c6ecb8477c5f3.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/Decharger objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ce/14969481dd70aba56d35db286c6ecb8477c5f3.debug debian/topp/usr/bin/Decharger install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/c2 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/DeMeanderize debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/c2/8467ff7053b3db66e6caf0b6c8d4a881c48731.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/c2/8467ff7053b3db66e6caf0b6c8d4a881c48731.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/c2/8467ff7053b3db66e6caf0b6c8d4a881c48731.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/DeMeanderize objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/c2/8467ff7053b3db66e6caf0b6c8d4a881c48731.debug debian/topp/usr/bin/DeMeanderize install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ca objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/SequenceCoverageCalculator 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debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/b9/6cfe8645422eb871dcd1348defd9d73bb961d8.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/b9/6cfe8645422eb871dcd1348defd9d73bb961d8.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/OpenSwathDIAPreScoring objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/b9/6cfe8645422eb871dcd1348defd9d73bb961d8.debug debian/topp/usr/bin/OpenSwathDIAPreScoring install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d9 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/MSGFPlusAdapter debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d9/0bb13cb2ad63ddc258a237df6fe30d6ef111dc.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d9/0bb13cb2ad63ddc258a237df6fe30d6ef111dc.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d9/0bb13cb2ad63ddc258a237df6fe30d6ef111dc.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/MSGFPlusAdapter objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d9/0bb13cb2ad63ddc258a237df6fe30d6ef111dc.debug debian/topp/usr/bin/MSGFPlusAdapter install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/be objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/SemanticValidator debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/be/7c882d37b50fe476745e15a493adf8efff25c7.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/be/7c882d37b50fe476745e15a493adf8efff25c7.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/be/7c882d37b50fe476745e15a493adf8efff25c7.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/SemanticValidator objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/be/7c882d37b50fe476745e15a493adf8efff25c7.debug debian/topp/usr/bin/SemanticValidator install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f6 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/IDMerger debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f6/139e0bd50b7be46ecc8ade2c8971c2199a74d4.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f6/139e0bd50b7be46ecc8ade2c8971c2199a74d4.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f6/139e0bd50b7be46ecc8ade2c8971c2199a74d4.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/IDMerger objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f6/139e0bd50b7be46ecc8ade2c8971c2199a74d4.debug debian/topp/usr/bin/IDMerger install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/42 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/PercolatorAdapter debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/42/e6b7fd82dcf0fae79c9c3a3e8528a5845e3d33.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/42/e6b7fd82dcf0fae79c9c3a3e8528a5845e3d33.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/42/e6b7fd82dcf0fae79c9c3a3e8528a5845e3d33.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/PercolatorAdapter objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/42/e6b7fd82dcf0fae79c9c3a3e8528a5845e3d33.debug debian/topp/usr/bin/PercolatorAdapter install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/77 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/ClusterMassTraces 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debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e9/ad3abc43ae7396e8cd7d2cc7ec8df571cd17eb.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e9/ad3abc43ae7396e8cd7d2cc7ec8df571cd17eb.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/PTPredict objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e9/ad3abc43ae7396e8cd7d2cc7ec8df571cd17eb.debug debian/topp/usr/bin/PTPredict install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/01 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/MapAlignerIdentification debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/01/4d694c7b56b8d74bd86e87041e868557059304.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/01/4d694c7b56b8d74bd86e87041e868557059304.debug chown 0:0 -- 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--add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e9/8a6d377084d0c89977133cf215ebd0492d8f34.debug debian/topp/usr/bin/QCExporter install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/56 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/ExternalCalibration debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/56/078cfff8e020bcce1cf7de62d3fcf16ab5c4c8.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/56/078cfff8e020bcce1cf7de62d3fcf16ab5c4c8.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/56/078cfff8e020bcce1cf7de62d3fcf16ab5c4c8.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/ExternalCalibration objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/56/078cfff8e020bcce1cf7de62d3fcf16ab5c4c8.debug debian/topp/usr/bin/ExternalCalibration install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/02 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/IDRipper debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/02/f7135b05487a3965fac5a8fa40d1e5add16e89.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/02/f7135b05487a3965fac5a8fa40d1e5add16e89.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/02/f7135b05487a3965fac5a8fa40d1e5add16e89.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/IDRipper objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/02/f7135b05487a3965fac5a8fa40d1e5add16e89.debug debian/topp/usr/bin/IDRipper install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/2c objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/MapRTTransformer 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debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/27/9c35baef1855e559e3246fb0a16fea132f96fc.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/27/9c35baef1855e559e3246fb0a16fea132f96fc.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/RNPxlSearch objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/27/9c35baef1855e559e3246fb0a16fea132f96fc.debug debian/topp/usr/bin/RNPxlSearch install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/cc objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/DatabaseFilter debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/cc/529fe3268962f6462dea3f84c2ba9f65ba492e.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/cc/529fe3268962f6462dea3f84c2ba9f65ba492e.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/cc/529fe3268962f6462dea3f84c2ba9f65ba492e.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/DatabaseFilter objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/cc/529fe3268962f6462dea3f84c2ba9f65ba492e.debug debian/topp/usr/bin/DatabaseFilter install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/8d objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/MRMPairFinder debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/8d/be61cc897fa8c4fe722102e7a188c5c495bc5b.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/8d/be61cc897fa8c4fe722102e7a188c5c495bc5b.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/8d/be61cc897fa8c4fe722102e7a188c5c495bc5b.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/MRMPairFinder objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/8d/be61cc897fa8c4fe722102e7a188c5c495bc5b.debug debian/topp/usr/bin/MRMPairFinder install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6f objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/PSMFeatureExtractor debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6f/5434653b1ed788900e01cd39b5e24739e0ad68.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6f/5434653b1ed788900e01cd39b5e24739e0ad68.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6f/5434653b1ed788900e01cd39b5e24739e0ad68.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/PSMFeatureExtractor objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6f/5434653b1ed788900e01cd39b5e24739e0ad68.debug debian/topp/usr/bin/PSMFeatureExtractor install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/9d objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/SpectraFilterMarkerMower 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--add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/a8/eec57fc4bd889817c49b169c5f6641e9e0f413.debug debian/topp/usr/bin/OpenSwathAssayGenerator install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f1 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/CometAdapter debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f1/e2bcc796a8153460cf18de0c101546d3843df9.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f1/e2bcc796a8153460cf18de0c101546d3843df9.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f1/e2bcc796a8153460cf18de0c101546d3843df9.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/CometAdapter objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f1/e2bcc796a8153460cf18de0c101546d3843df9.debug debian/topp/usr/bin/CometAdapter install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/45 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/PrecursorIonSelector debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/45/ea74976918dab494eb2d60c6a493a999cbe778.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/45/ea74976918dab494eb2d60c6a493a999cbe778.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/45/ea74976918dab494eb2d60c6a493a999cbe778.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/PrecursorIonSelector objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/45/ea74976918dab494eb2d60c6a493a999cbe778.debug debian/topp/usr/bin/PrecursorIonSelector install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6a objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/SpectraFilterScaler 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debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f2/7a3d8b3df60064cc51f1d233a87def985227df.debug debian/topp/usr/bin/SiriusAdapter install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/17 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/SvmTheoreticalSpectrumGeneratorTrainer debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/17/cff780c78d3050c384897d28c52a4369f23a6c.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/17/cff780c78d3050c384897d28c52a4369f23a6c.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/17/cff780c78d3050c384897d28c52a4369f23a6c.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/SvmTheoreticalSpectrumGeneratorTrainer objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/17/cff780c78d3050c384897d28c52a4369f23a6c.debug debian/topp/usr/bin/SvmTheoreticalSpectrumGeneratorTrainer install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/96 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/MascotAdapter debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/96/731edb4a11287b9d4ccaaf95ed3c7515fa710e.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/96/731edb4a11287b9d4ccaaf95ed3c7515fa710e.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/96/731edb4a11287b9d4ccaaf95ed3c7515fa710e.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/MascotAdapter objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/96/731edb4a11287b9d4ccaaf95ed3c7515fa710e.debug debian/topp/usr/bin/MascotAdapter install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f2 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/FeatureFinderMultiplex 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debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/68 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/OpenSwathAnalyzer debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/68/4a86aa42f15c5c90c9bb11966c6fc5448e5b14.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/68/4a86aa42f15c5c90c9bb11966c6fc5448e5b14.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/68/4a86aa42f15c5c90c9bb11966c6fc5448e5b14.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/OpenSwathAnalyzer objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/68/4a86aa42f15c5c90c9bb11966c6fc5448e5b14.debug debian/topp/usr/bin/OpenSwathAnalyzer install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e1 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/MassTraceExtractor 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strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/CompNovoCID objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6c/4aa284b4c38f20a001e40619d4c1a3474a78d4.debug debian/topp/usr/bin/CompNovoCID install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d7 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/QCMerger debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d7/3ca2864fcfe86a8d56bf12ca11056f0bad7903.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d7/3ca2864fcfe86a8d56bf12ca11056f0bad7903.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d7/3ca2864fcfe86a8d56bf12ca11056f0bad7903.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/QCMerger objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d7/3ca2864fcfe86a8d56bf12ca11056f0bad7903.debug debian/topp/usr/bin/QCMerger install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/0d objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/RNADigestor debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/0d/4818fce7b1b83426ca4706ecab536884776438.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/0d/4818fce7b1b83426ca4706ecab536884776438.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/0d/4818fce7b1b83426ca4706ecab536884776438.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/RNADigestor objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/0d/4818fce7b1b83426ca4706ecab536884776438.debug debian/topp/usr/bin/RNADigestor install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ee objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/OpenSwathMzMLFileCacher debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ee/285f92dcbb84d7556a73bd71b39f7128ac6a86.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ee/285f92dcbb84d7556a73bd71b39f7128ac6a86.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ee/285f92dcbb84d7556a73bd71b39f7128ac6a86.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/OpenSwathMzMLFileCacher objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ee/285f92dcbb84d7556a73bd71b39f7128ac6a86.debug debian/topp/usr/bin/OpenSwathMzMLFileCacher install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/9b objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/MascotAdapterOnline debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/9b/a2857bd91fe530ce37a8066c7842daa8b35b2c.debug chmod 0644 -- 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debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/3c/a483536a265b50d409c9e2cea1fe188c9fb922.debug debian/topp/usr/bin/PTModel install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/66 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/SpectraFilterThresholdMower debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/66/dd0b1c3d8426e1cb870204bbd2ba73daf3a100.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/66/dd0b1c3d8426e1cb870204bbd2ba73daf3a100.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/66/dd0b1c3d8426e1cb870204bbd2ba73daf3a100.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/SpectraFilterThresholdMower objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/66/dd0b1c3d8426e1cb870204bbd2ba73daf3a100.debug debian/topp/usr/bin/SpectraFilterThresholdMower install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/86 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/SpecLibCreator debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/86/fe28f4082184c3a7f1d8c338d8de9a83c4257f.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/86/fe28f4082184c3a7f1d8c338d8de9a83c4257f.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/86/fe28f4082184c3a7f1d8c338d8de9a83c4257f.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/SpecLibCreator objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/86/fe28f4082184c3a7f1d8c338d8de9a83c4257f.debug debian/topp/usr/bin/SpecLibCreator install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/fb objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/HighResPrecursorMassCorrector debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/fb/6e3029ad118cb9132eeecb306b3c475109127f.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/fb/6e3029ad118cb9132eeecb306b3c475109127f.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/fb/6e3029ad118cb9132eeecb306b3c475109127f.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/HighResPrecursorMassCorrector objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/fb/6e3029ad118cb9132eeecb306b3c475109127f.debug debian/topp/usr/bin/HighResPrecursorMassCorrector install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e8 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/ClusterMassTracesByPrecursor debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e8/03b27e4f9c15d3be767b63b3ca811cdc575d6e.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e8/03b27e4f9c15d3be767b63b3ca811cdc575d6e.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e8/03b27e4f9c15d3be767b63b3ca811cdc575d6e.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/ClusterMassTracesByPrecursor objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e8/03b27e4f9c15d3be767b63b3ca811cdc575d6e.debug debian/topp/usr/bin/ClusterMassTracesByPrecursor install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/2d objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/QCEmbedder debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/2d/ea24e76e0590aaef37cee7b7d30231c7133b20.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/2d/ea24e76e0590aaef37cee7b7d30231c7133b20.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/2d/ea24e76e0590aaef37cee7b7d30231c7133b20.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/QCEmbedder objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/2d/ea24e76e0590aaef37cee7b7d30231c7133b20.debug debian/topp/usr/bin/QCEmbedder install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ec objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/IDSplitter debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ec/b43c77dfcf7bff834bb1c4c988b7bf13d5ddd4.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ec/b43c77dfcf7bff834bb1c4c988b7bf13d5ddd4.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ec/b43c77dfcf7bff834bb1c4c988b7bf13d5ddd4.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/IDSplitter objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ec/b43c77dfcf7bff834bb1c4c988b7bf13d5ddd4.debug debian/topp/usr/bin/IDSplitter install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/51 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/ProteinQuantifier debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/51/dcc503ed61f240d5d42d9a550a82c5e2a3c52a.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/51/dcc503ed61f240d5d42d9a550a82c5e2a3c52a.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/51/dcc503ed61f240d5d42d9a550a82c5e2a3c52a.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/ProteinQuantifier objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/51/dcc503ed61f240d5d42d9a550a82c5e2a3c52a.debug debian/topp/usr/bin/ProteinQuantifier install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f7 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/FileConverter debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f7/54ec6348ea479edd36d9c0bcf915651c9d12b9.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f7/54ec6348ea479edd36d9c0bcf915651c9d12b9.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f7/54ec6348ea479edd36d9c0bcf915651c9d12b9.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/FileConverter objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f7/54ec6348ea479edd36d9c0bcf915651c9d12b9.debug debian/topp/usr/bin/FileConverter install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/0e objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/FeatureFinderIdentification debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/0e/f8bee5f44adcfaeb47171bf681c6d2664ba173.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/0e/f8bee5f44adcfaeb47171bf681c6d2664ba173.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/0e/f8bee5f44adcfaeb47171bf681c6d2664ba173.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/FeatureFinderIdentification objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/0e/f8bee5f44adcfaeb47171bf681c6d2664ba173.debug debian/topp/usr/bin/FeatureFinderIdentification install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ad objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/Digestor debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ad/1fe06d09a9057b8c1ab0ba660334551be69d9e.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ad/1fe06d09a9057b8c1ab0ba660334551be69d9e.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ad/1fe06d09a9057b8c1ab0ba660334551be69d9e.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/Digestor objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ad/1fe06d09a9057b8c1ab0ba660334551be69d9e.debug debian/topp/usr/bin/Digestor install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e3 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/FeatureLinkerUnlabeled debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e3/691491429b326f9dd32b13914c725cbbc18402.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e3/691491429b326f9dd32b13914c725cbbc18402.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e3/691491429b326f9dd32b13914c725cbbc18402.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/FeatureLinkerUnlabeled objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e3/691491429b326f9dd32b13914c725cbbc18402.debug debian/topp/usr/bin/FeatureLinkerUnlabeled install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f9 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/CruxAdapter debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f9/1f9f4dfd2926c9881d9399845e3a62293132e2.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f9/1f9f4dfd2926c9881d9399845e3a62293132e2.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f9/1f9f4dfd2926c9881d9399845e3a62293132e2.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/CruxAdapter objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f9/1f9f4dfd2926c9881d9399845e3a62293132e2.debug debian/topp/usr/bin/CruxAdapter install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/fa objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/TICCalculator debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/fa/2791c502eb402675f5b2a51b8f51c3c9ac5d11.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/fa/2791c502eb402675f5b2a51b8f51c3c9ac5d11.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/fa/2791c502eb402675f5b2a51b8f51c3c9ac5d11.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/TICCalculator objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/fa/2791c502eb402675f5b2a51b8f51c3c9ac5d11.debug debian/topp/usr/bin/TICCalculator install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/92 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/TransformationEvaluation debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/92/9de1c68018d6833c359b4a77cb1d1dcc887587.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/92/9de1c68018d6833c359b4a77cb1d1dcc887587.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/92/9de1c68018d6833c359b4a77cb1d1dcc887587.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/TransformationEvaluation objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/92/9de1c68018d6833c359b4a77cb1d1dcc887587.debug debian/topp/usr/bin/TransformationEvaluation install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/77 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/SpectraFilterWindowMower debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/77/19232828c9694462129ee722c4aa5ee0424c54.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/77/19232828c9694462129ee722c4aa5ee0424c54.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/77/19232828c9694462129ee722c4aa5ee0424c54.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/SpectraFilterWindowMower objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/77/19232828c9694462129ee722c4aa5ee0424c54.debug debian/topp/usr/bin/SpectraFilterWindowMower install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/0c objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/GNPSExport debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/0c/f5a1bdaadfff394d50373b40f8cb5c973689a7.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/0c/f5a1bdaadfff394d50373b40f8cb5c973689a7.debug chown 0:0 -- 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--only-keep-debug --compress-debug-sections debian/topp/usr/bin/PhosphoScoring debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/9a/195a8bbc4c1364fa03e0c77ae79d4915f66036.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/9a/195a8bbc4c1364fa03e0c77ae79d4915f66036.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/9a/195a8bbc4c1364fa03e0c77ae79d4915f66036.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/PhosphoScoring objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/9a/195a8bbc4c1364fa03e0c77ae79d4915f66036.debug debian/topp/usr/bin/PhosphoScoring install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/3d objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/ERPairFinder debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/3d/f9e7cf111ebd5a8aad314c4b7b3ee491a71255.debug chmod 0644 -- 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--remove-section=.comment --remove-section=.note debian/topp/usr/bin/CVInspector objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/0b/a279fcf30a3265a3cd865405f7e747346a949a.debug debian/topp/usr/bin/CVInspector install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f4 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/FeatureLinkerUnlabeledKD debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f4/2ca6a67ff9e0841987fc8710c425ebe3946b6d.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f4/2ca6a67ff9e0841987fc8710c425ebe3946b6d.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f4/2ca6a67ff9e0841987fc8710c425ebe3946b6d.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/FeatureLinkerUnlabeledKD objcopy --add-gnu-debuglink 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debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ce objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/OpenSwathRewriteToFeatureXML debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ce/0647fb8d3c44b599b78933d5a35d55790d79f3.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ce/0647fb8d3c44b599b78933d5a35d55790d79f3.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ce/0647fb8d3c44b599b78933d5a35d55790d79f3.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/OpenSwathRewriteToFeatureXML objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ce/0647fb8d3c44b599b78933d5a35d55790d79f3.debug debian/topp/usr/bin/OpenSwathRewriteToFeatureXML install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/46 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/PrecursorMassCorrector 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--only-keep-debug --compress-debug-sections debian/topp/usr/bin/InclusionExclusionListCreator debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/01/cad0b82174ef7e05081dbb8d35745912d7b445.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/01/cad0b82174ef7e05081dbb8d35745912d7b445.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/01/cad0b82174ef7e05081dbb8d35745912d7b445.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/InclusionExclusionListCreator objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/01/cad0b82174ef7e05081dbb8d35745912d7b445.debug debian/topp/usr/bin/InclusionExclusionListCreator install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/1c objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/RTEvaluation 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debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/91 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/FFEval debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/91/6d0e718c6ffa44ab17bfdab89ffb4965521df3.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/91/6d0e718c6ffa44ab17bfdab89ffb4965521df3.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/91/6d0e718c6ffa44ab17bfdab89ffb4965521df3.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/FFEval objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/91/6d0e718c6ffa44ab17bfdab89ffb4965521df3.debug debian/topp/usr/bin/FFEval install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/b9 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/InspectAdapter 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--only-keep-debug --compress-debug-sections debian/topp/usr/bin/QCShrinker debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6e/699a767a02adac4fde8be1a9fc03834198d632.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6e/699a767a02adac4fde8be1a9fc03834198d632.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6e/699a767a02adac4fde8be1a9fc03834198d632.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/QCShrinker objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6e/699a767a02adac4fde8be1a9fc03834198d632.debug debian/topp/usr/bin/QCShrinker install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/8c objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/MassCalculator debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/8c/e8cf7e386727ce8bc5b7d6478151ff70e8b16d.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/8c/e8cf7e386727ce8bc5b7d6478151ff70e8b16d.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/8c/e8cf7e386727ce8bc5b7d6478151ff70e8b16d.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/MassCalculator objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/8c/e8cf7e386727ce8bc5b7d6478151ff70e8b16d.debug debian/topp/usr/bin/MassCalculator install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/27 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/PeakPickerIterative debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/27/57dd93186c974b0c8f5f85a8c8d6255e25967f.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/27/57dd93186c974b0c8f5f85a8c8d6255e25967f.debug chown 0:0 -- 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--add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d9/04032ba5389cd6c80b45bd8e7e3986a8580a7e.debug debian/topp/usr/bin/MzMLSplitter install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/5f objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/SpectraFilterNLargest debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/5f/7abc530a1f7032f51136e80346e1501e64004e.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/5f/7abc530a1f7032f51136e80346e1501e64004e.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/5f/7abc530a1f7032f51136e80346e1501e64004e.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/SpectraFilterNLargest objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/5f/7abc530a1f7032f51136e80346e1501e64004e.debug debian/topp/usr/bin/SpectraFilterNLargest install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/cb objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/FuzzyDiff debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/cb/d59c36d7b86f94f8a7ac86146d73c540e14141.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/cb/d59c36d7b86f94f8a7ac86146d73c540e14141.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/cb/d59c36d7b86f94f8a7ac86146d73c540e14141.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/FuzzyDiff objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/cb/d59c36d7b86f94f8a7ac86146d73c540e14141.debug debian/topp/usr/bin/FuzzyDiff install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/70 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/NovorAdapter debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/70/ba90fa9917451e02d12011d210eb562c0df264.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/70/ba90fa9917451e02d12011d210eb562c0df264.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/70/ba90fa9917451e02d12011d210eb562c0df264.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/NovorAdapter objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/70/ba90fa9917451e02d12011d210eb562c0df264.debug debian/topp/usr/bin/NovorAdapter install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d1 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/OpenSwathFileSplitter debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d1/7f51a2dfb607ee1f619efac205624966f29fe5.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d1/7f51a2dfb607ee1f619efac205624966f29fe5.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d1/7f51a2dfb607ee1f619efac205624966f29fe5.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/OpenSwathFileSplitter objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/d1/7f51a2dfb607ee1f619efac205624966f29fe5.debug debian/topp/usr/bin/OpenSwathFileSplitter install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ac objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/MzTabExporter debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ac/c1af1002d32a7e4ac30bee3ee0b3bd6bc25f7f.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ac/c1af1002d32a7e4ac30bee3ee0b3bd6bc25f7f.debug chown 0:0 -- 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debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/a0/59f9be6d57d51496846f18449882829abe1542.debug debian/topp/usr/bin/MapNormalizer install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ff objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/ProteinResolver debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ff/c9aab9e5dd59323a518b570f029cb7b1927f29.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ff/c9aab9e5dd59323a518b570f029cb7b1927f29.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ff/c9aab9e5dd59323a518b570f029cb7b1927f29.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/ProteinResolver objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/ff/c9aab9e5dd59323a518b570f029cb7b1927f29.debug debian/topp/usr/bin/ProteinResolver install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/75 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/RNPxlXICFilter debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/75/e9921e0f3e03fe94f87f0c34273ffcc6ffd402.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/75/e9921e0f3e03fe94f87f0c34273ffcc6ffd402.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/75/e9921e0f3e03fe94f87f0c34273ffcc6ffd402.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/RNPxlXICFilter objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/75/e9921e0f3e03fe94f87f0c34273ffcc6ffd402.debug debian/topp/usr/bin/RNPxlXICFilter install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/66 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/FeatureFinderCentroided debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/66/db8594f0042faeabc65b0b7dad9a6334e9452f.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/66/db8594f0042faeabc65b0b7dad9a6334e9452f.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/66/db8594f0042faeabc65b0b7dad9a6334e9452f.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/FeatureFinderCentroided objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/66/db8594f0042faeabc65b0b7dad9a6334e9452f.debug debian/topp/usr/bin/FeatureFinderCentroided install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/21 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/Resampler debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/21/7c6ddb139a2976f4ef5fb61ffa23b4ec6fb405.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/21/7c6ddb139a2976f4ef5fb61ffa23b4ec6fb405.debug chown 0:0 -- 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debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/47/efeb6e03d470997124c2480740f88f9726eef7.debug debian/topp/usr/bin/GenericWrapper install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/bb objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/SeedListGenerator debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/bb/f3cdd3a426c6964fc43b8a15a079df7ac03f0b.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/bb/f3cdd3a426c6964fc43b8a15a079df7ac03f0b.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/bb/f3cdd3a426c6964fc43b8a15a079df7ac03f0b.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/SeedListGenerator objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/bb/f3cdd3a426c6964fc43b8a15a079df7ac03f0b.debug debian/topp/usr/bin/SeedListGenerator install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/c5 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/INIUpdater debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/c5/fdf5037c5eebb3d9a59319b459008dc583ea80.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/c5/fdf5037c5eebb3d9a59319b459008dc583ea80.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/c5/fdf5037c5eebb3d9a59319b459008dc583ea80.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/INIUpdater objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/c5/fdf5037c5eebb3d9a59319b459008dc583ea80.debug debian/topp/usr/bin/INIUpdater install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/05 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/TextExporter 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chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/3c/6c562c6e950c0c8a0095709c7b319a07d16ba6.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/PeptideIndexer objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/3c/6c562c6e950c0c8a0095709c7b319a07d16ba6.debug debian/topp/usr/bin/PeptideIndexer install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e4 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/IDMassAccuracy debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e4/2320ebf406fb61ea92911ccc1dc62f54ecd8c1.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e4/2320ebf406fb61ea92911ccc1dc62f54ecd8c1.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e4/2320ebf406fb61ea92911ccc1dc62f54ecd8c1.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/IDMassAccuracy objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/e4/2320ebf406fb61ea92911ccc1dc62f54ecd8c1.debug debian/topp/usr/bin/IDMassAccuracy install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6e objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/FeatureFinderSuperHirn debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6e/10ac6ef95c536d2d896de6cc1ee86bd0043106.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6e/10ac6ef95c536d2d896de6cc1ee86bd0043106.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6e/10ac6ef95c536d2d896de6cc1ee86bd0043106.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/FeatureFinderSuperHirn objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/6e/10ac6ef95c536d2d896de6cc1ee86bd0043106.debug debian/topp/usr/bin/FeatureFinderSuperHirn install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f3 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/NucleicAcidSearchEngine debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f3/fd50359156596fb7fb7903e9d5c6de29e45fce.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f3/fd50359156596fb7fb7903e9d5c6de29e45fce.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f3/fd50359156596fb7fb7903e9d5c6de29e45fce.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/NucleicAcidSearchEngine objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/f3/fd50359156596fb7fb7903e9d5c6de29e45fce.debug debian/topp/usr/bin/NucleicAcidSearchEngine install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/a6 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/RTModel debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/a6/1a32bf9850a009db7961cd076ce235a2369f95.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/a6/1a32bf9850a009db7961cd076ce235a2369f95.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/a6/1a32bf9850a009db7961cd076ce235a2369f95.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/RTModel objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/a6/1a32bf9850a009db7961cd076ce235a2369f95.debug debian/topp/usr/bin/RTModel install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/34 objcopy --only-keep-debug --compress-debug-sections debian/topp/usr/bin/OMSSAAdapter debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/34/3a78e7e250c65dfb98c3d446221046ada94583.debug chmod 0644 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/34/3a78e7e250c65dfb98c3d446221046ada94583.debug chown 0:0 -- debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/34/3a78e7e250c65dfb98c3d446221046ada94583.debug strip --remove-section=.comment --remove-section=.note debian/topp/usr/bin/OMSSAAdapter objcopy --add-gnu-debuglink debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.build-id/34/3a78e7e250c65dfb98c3d446221046ada94583.debug debian/topp/usr/bin/OMSSAAdapter install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/topp/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/topp/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/topp/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/topp/usr/lib/debug install -m0755 -d debian/.debhelper/topp/dbgsym-root/usr/share/doc ln -s topp debian/.debhelper/topp/dbgsym-root/usr/share/doc/topp-dbgsym install -m0755 -d debian/.debhelper/topp chmod 0644 -- debian/.debhelper/libopenms2.6.0/dbgsym-root/usr/lib/debug/.build-id/7d/f99e940a6fc1cc5310220aaf4b4493be3ef51c.debug chown 0:0 -- debian/.debhelper/libopenms2.6.0/dbgsym-root/usr/lib/debug/.build-id/7d/f99e940a6fc1cc5310220aaf4b4493be3ef51c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 objcopy --add-gnu-debuglink debian/.debhelper/libopenms2.6.0/dbgsym-root/usr/lib/debug/.build-id/7d/f99e940a6fc1cc5310220aaf4b4493be3ef51c.debug debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 install -m0755 -d debian/.debhelper/libopenms2.6.0/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libopenms2.6.0/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/libopenms2.6.0/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/libopenms2.6.0/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/libopenms2.6.0/usr/lib/debug install -m0755 -d debian/.debhelper/libopenms2.6.0/dbgsym-root/usr/share/doc ln -s libopenms2.6.0 debian/.debhelper/libopenms2.6.0/dbgsym-root/usr/share/doc/libopenms2.6.0-dbgsym install -m0755 -d debian/.debhelper/libopenms2.6.0 dh_makeshlibs -O--buildsystem=cmake -O--no-parallel rm -f debian/libopenms2.6.0/DEBIAN/shlibs install -m0755 -d debian/libopenms2.6.0/DEBIAN echo "libOpenMS 2.6.0 libopenms2.6.0 (>= 2.6.0+cleaned1)" >> debian/libopenms2.6.0/DEBIAN/shlibs echo "libOpenMS_GUI 2.6.0 libopenms2.6.0 (>= 2.6.0+cleaned1)" >> debian/libopenms2.6.0/DEBIAN/shlibs echo "libOpenSwathAlgo 2.6.0 libopenms2.6.0 (>= 2.6.0+cleaned1)" >> debian/libopenms2.6.0/DEBIAN/shlibs echo "libSuperHirn 2.6.0 libopenms2.6.0 (>= 2.6.0+cleaned1)" >> debian/libopenms2.6.0/DEBIAN/shlibs chmod 0644 -- debian/libopenms2.6.0/DEBIAN/shlibs chown 0:0 -- debian/libopenms2.6.0/DEBIAN/shlibs mv debian/.debhelper/generated/libopenms2.6.0/triggers.new debian/.debhelper/generated/libopenms2.6.0/triggers rm -f debian/libopenms-dev/DEBIAN/shlibs rm -f debian/topp/DEBIAN/shlibs rm -f debian/openms-common/DEBIAN/shlibs rm -f debian/openms-doc/DEBIAN/shlibs rm -f debian/openms/DEBIAN/shlibs dh_shlibdeps -O--buildsystem=cmake -O--no-parallel install -m0755 -d debian/libopenms2.6.0/DEBIAN dpkg-shlibdeps -Tdebian/libopenms2.6.0.substvars debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libOpenMS_GUI.so.2.6.0 debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libOpenSwathAlgo.so.2.6.0 debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libSuperHirn.so.2.6.0 debian/libopenms2.6.0/usr/lib/x86_64-linux-gnu/libOpenMS.so.2.6.0 dpkg-shlibdeps: warning: deprecated use of LD_LIBRARY_PATH with private library directory which interferes with cross-building, please use -l option instead install -m0755 -d debian/topp/DEBIAN dpkg-shlibdeps -Tdebian/topp.substvars debian/topp/usr/bin/PeakPickerWavelet debian/topp/usr/bin/OpenSwathConfidenceScoring debian/topp/usr/bin/OpenSwathChromatogramExtractor debian/topp/usr/bin/MapStatistics debian/topp/usr/bin/DigestorMotif debian/topp/usr/bin/OpenSwathDecoyGenerator debian/topp/usr/bin/IDDecoyProbability debian/topp/usr/bin/SimpleSearchEngine debian/topp/usr/bin/SpectraFilterBernNorm debian/topp/usr/bin/ConsensusID debian/topp/usr/bin/NoiseFilterSGolay debian/topp/usr/bin/FeatureLinkerUnlabeledQT debian/topp/usr/bin/FileInfo debian/topp/usr/bin/XTandemAdapter debian/topp/usr/bin/SpectraMerger debian/topp/usr/bin/FileMerger debian/topp/usr/bin/MSFraggerAdapter debian/topp/usr/bin/MRMMapper debian/topp/usr/bin/MultiplexResolver debian/topp/usr/bin/INIFileEditor debian/topp/usr/bin/OpenPepXLLF debian/topp/usr/bin/IDPosteriorErrorProbability debian/topp/usr/bin/ProteomicsLFQ debian/topp/usr/bin/PepNovoAdapter debian/topp/usr/bin/FeatureFinderIsotopeWavelet debian/topp/usr/bin/StaticModification debian/topp/usr/bin/InternalCalibration debian/topp/usr/bin/FidoAdapter debian/topp/usr/bin/DecoyDatabase debian/topp/usr/bin/BaselineFilter debian/topp/usr/bin/ImageCreator debian/topp/usr/bin/QualityControl debian/topp/usr/bin/IDExtractor debian/topp/usr/bin/NoiseFilterGaussian debian/topp/usr/bin/MapAlignerTreeGuided debian/topp/usr/bin/IDFileConverter debian/topp/usr/bin/DatabaseSuitability debian/topp/usr/bin/AssayGeneratorMetabo debian/topp/usr/bin/DTAExtractor debian/topp/usr/bin/OpenSwathWorkflow debian/topp/usr/bin/SwathWizard debian/topp/usr/bin/SpectraSTSearchAdapter debian/topp/usr/bin/TOPPAS debian/topp/usr/bin/XFDR debian/topp/usr/bin/TOFCalibration debian/topp/usr/bin/MRMTransitionGroupPicker debian/topp/usr/bin/FalseDiscoveryRate debian/topp/usr/bin/MetaboliteSpectralMatcher debian/topp/usr/bin/LabeledEval debian/topp/usr/bin/RNAMassCalculator debian/topp/usr/bin/OpenPepXL debian/topp/usr/bin/ExecutePipeline debian/topp/usr/bin/MSstatsConverter debian/topp/usr/bin/OpenSwathFeatureXMLToTSV debian/topp/usr/bin/MSSimulator debian/topp/usr/bin/MaRaClusterAdapter debian/topp/usr/bin/PeakPickerHiRes debian/topp/usr/bin/OpenSwathRTNormalizer debian/topp/usr/bin/MyriMatchAdapter debian/topp/usr/bin/MapAlignerPoseClustering debian/topp/usr/bin/MetaboliteAdductDecharger debian/topp/usr/bin/FeatureFinderMetabo debian/topp/usr/bin/FeatureFinderMRM debian/topp/usr/bin/SpectraFilterParentPeakMower debian/topp/usr/bin/XMLValidator debian/topp/usr/bin/OpenMSInfo debian/topp/usr/bin/FeatureFinderMetaboIdent debian/topp/usr/bin/EICExtractor debian/topp/usr/bin/IDScoreSwitcher debian/topp/usr/bin/Decharger debian/topp/usr/bin/DeMeanderize debian/topp/usr/bin/SequenceCoverageCalculator debian/topp/usr/bin/OpenSwathDIAPreScoring debian/topp/usr/bin/MSGFPlusAdapter debian/topp/usr/bin/SemanticValidator debian/topp/usr/bin/IDMerger debian/topp/usr/bin/PercolatorAdapter debian/topp/usr/bin/ClusterMassTraces debian/topp/usr/bin/PTPredict debian/topp/usr/bin/MapAlignerIdentification debian/topp/usr/bin/QCExporter debian/topp/usr/bin/ExternalCalibration debian/topp/usr/bin/IDRipper debian/topp/usr/bin/MapRTTransformer debian/topp/usr/bin/RNPxlSearch debian/topp/usr/bin/DatabaseFilter debian/topp/usr/bin/MRMPairFinder debian/topp/usr/bin/PSMFeatureExtractor debian/topp/usr/bin/SpectraFilterMarkerMower debian/topp/usr/bin/MapAlignerSpectrum debian/topp/usr/bin/CompNovo debian/topp/usr/bin/OpenSwathAssayGenerator debian/topp/usr/bin/CometAdapter debian/topp/usr/bin/PrecursorIonSelector debian/topp/usr/bin/SpectraFilterScaler debian/topp/usr/bin/FeatureLinkerLabeled debian/topp/usr/bin/Epifany debian/topp/usr/bin/SiriusAdapter debian/topp/usr/bin/SvmTheoreticalSpectrumGeneratorTrainer debian/topp/usr/bin/MascotAdapter debian/topp/usr/bin/FeatureFinderMultiplex debian/topp/usr/bin/ConsensusMapNormalizer debian/topp/usr/bin/RTPredict debian/topp/usr/bin/QCImporter debian/topp/usr/bin/IDConflictResolver debian/topp/usr/bin/OpenSwathAnalyzer debian/topp/usr/bin/MassTraceExtractor debian/topp/usr/bin/SpecLibSearcher debian/topp/usr/bin/CompNovoCID debian/topp/usr/bin/QCMerger debian/topp/usr/bin/RNADigestor debian/topp/usr/bin/OpenSwathMzMLFileCacher debian/topp/usr/bin/MascotAdapterOnline debian/topp/usr/bin/AccurateMassSearch debian/topp/usr/bin/PTModel debian/topp/usr/bin/SpectraFilterThresholdMower debian/topp/usr/bin/SpecLibCreator debian/topp/usr/bin/HighResPrecursorMassCorrector debian/topp/usr/bin/ClusterMassTracesByPrecursor debian/topp/usr/bin/QCEmbedder debian/topp/usr/bin/IDSplitter debian/topp/usr/bin/ProteinQuantifier debian/topp/usr/bin/FileConverter debian/topp/usr/bin/FeatureFinderIdentification debian/topp/usr/bin/Digestor debian/topp/usr/bin/FeatureLinkerUnlabeled debian/topp/usr/bin/CruxAdapter debian/topp/usr/bin/TICCalculator debian/topp/usr/bin/TransformationEvaluation debian/topp/usr/bin/SpectraFilterWindowMower debian/topp/usr/bin/GNPSExport debian/topp/usr/bin/IsobaricAnalyzer debian/topp/usr/bin/FileFilter debian/topp/usr/bin/PhosphoScoring debian/topp/usr/bin/ERPairFinder debian/topp/usr/bin/CVInspector debian/topp/usr/bin/FeatureLinkerUnlabeledKD debian/topp/usr/bin/SpectraFilterSqrtMower debian/topp/usr/bin/OpenSwathRewriteToFeatureXML debian/topp/usr/bin/PrecursorMassCorrector debian/topp/usr/bin/SpectraFilterNormalizer debian/topp/usr/bin/QCExtractor debian/topp/usr/bin/IDRTCalibration debian/topp/usr/bin/TOPPView debian/topp/usr/bin/InclusionExclusionListCreator debian/topp/usr/bin/RTEvaluation debian/topp/usr/bin/ProteinInference debian/topp/usr/bin/LuciphorAdapter debian/topp/usr/bin/MetaProSIP debian/topp/usr/bin/FFEval debian/topp/usr/bin/InspectAdapter debian/topp/usr/bin/TargetedFileConverter debian/topp/usr/bin/IDFilter debian/topp/usr/bin/QCCalculator debian/topp/usr/bin/IDMapper debian/topp/usr/bin/QCShrinker debian/topp/usr/bin/MassCalculator debian/topp/usr/bin/PeakPickerIterative debian/topp/usr/bin/MzMLSplitter debian/topp/usr/bin/SpectraFilterNLargest debian/topp/usr/bin/FuzzyDiff debian/topp/usr/bin/NovorAdapter debian/topp/usr/bin/OpenSwathFileSplitter debian/topp/usr/bin/MzTabExporter debian/topp/usr/bin/MapNormalizer debian/topp/usr/bin/ProteinResolver debian/topp/usr/bin/RNPxlXICFilter debian/topp/usr/bin/FeatureFinderCentroided debian/topp/usr/bin/Resampler debian/topp/usr/bin/GenericWrapper debian/topp/usr/bin/SeedListGenerator debian/topp/usr/bin/INIUpdater debian/topp/usr/bin/TextExporter debian/topp/usr/bin/PeptideIndexer debian/topp/usr/bin/IDMassAccuracy debian/topp/usr/bin/FeatureFinderSuperHirn debian/topp/usr/bin/NucleicAcidSearchEngine debian/topp/usr/bin/RTModel debian/topp/usr/bin/OMSSAAdapter dpkg-shlibdeps: warning: deprecated use of LD_LIBRARY_PATH with private library directory which interferes with cross-building, please use -l option instead dh_installdeb -O--buildsystem=cmake -O--no-parallel install -m0755 -d debian/libopenms2.6.0/DEBIAN install -p -m0644 debian/.debhelper/generated/libopenms2.6.0/triggers debian/libopenms2.6.0/DEBIAN/triggers install -m0755 -d debian/libopenms-dev/DEBIAN install -m0755 -d debian/topp/DEBIAN install -m0755 -d debian/openms-common/DEBIAN install -m0755 -d debian/openms-doc/DEBIAN install -m0755 -d debian/openms/DEBIAN dh_gencontrol -O--buildsystem=cmake -O--no-parallel install -m0755 -d debian/openms-common/DEBIAN echo misc:Depends= >> debian/openms-common.substvars echo misc:Pre-Depends= >> debian/openms-common.substvars dpkg-gencontrol -popenms-common -ldebian/changelog -Tdebian/openms-common.substvars -cdebian/control -Pdebian/openms-common install -m0755 -d debian/libopenms-dev/DEBIAN echo misc:Depends= >> debian/libopenms-dev.substvars echo misc:Pre-Depends= >> debian/libopenms-dev.substvars dpkg-gencontrol -plibopenms-dev -ldebian/changelog -Tdebian/libopenms-dev.substvars -cdebian/control -Pdebian/libopenms-dev install -m0755 -d debian/libopenms2.6.0/DEBIAN echo misc:Depends= >> debian/libopenms2.6.0.substvars echo misc:Pre-Depends= >> debian/libopenms2.6.0.substvars install -m0755 -d debian/.debhelper/libopenms2.6.0/dbgsym-root/DEBIAN dpkg-gencontrol -plibopenms2.6.0 -ldebian/changelog -Tdebian/libopenms2.6.0.substvars -cdebian/control -Pdebian/.debhelper/libopenms2.6.0/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libopenms2.6.0-dbgsym "-DDepends=libopenms2.6.0 (= \${binary:Version})" "-DDescription=debug symbols for libopenms2.6.0" "-DBuild-Ids=29abb5acff265a751922e0c725947c15e101fb8a 42247237f3a1fd7a11e264c927fc45e5fa113985 7df99e940a6fc1cc5310220aaf4b4493be3ef51c d47664abade981db842a4c13b37a287bb7b86176" -DSection=debug -UReplaces -UBreaks install -m0755 -d debian/topp/DEBIAN echo misc:Depends= >> debian/topp.substvars echo misc:Pre-Depends= >> debian/topp.substvars install -m0755 -d debian/.debhelper/topp/dbgsym-root/DEBIAN dpkg-gencontrol -ptopp -ldebian/changelog -Tdebian/topp.substvars -cdebian/control -Pdebian/.debhelper/topp/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=topp-dbgsym "-DDepends=topp (= \${binary:Version})" "-DDescription=debug symbols for topp" "-DBuild-Ids=00801016d79931fcdb40bf4017394c1265f3c87c 014d694c7b56b8d74bd86e87041e868557059304 01cad0b82174ef7e05081dbb8d35745912d7b445 01cb1be09e72f50714bab7281c969848562468d8 02f7135b05487a3965fac5a8fa40d1e5add16e89 03e887a98f791e33bd2cf1740ba450c1fd8e6de5 055d50d18efe2e8af094a17a153157365823f830 05e801215bb37ce4df0e034f8ed3faa7c84232c3 06bee4f1b929b7fd3b563ae6d5f0521214fc9366 072b8f64ca7023d39f269b60d218d9a2890c6534 09671375f717469c400c5ba7fc621649ba1477a3 0a1ebc171e1704af79b2cb575f0bfe344ec69dbf 0ab9bb99d6a042cd41ef03637755d729c2ececd1 0ba279fcf30a3265a3cd865405f7e747346a949a 0cf5a1bdaadfff394d50373b40f8cb5c973689a7 0d4818fce7b1b83426ca4706ecab536884776438 0ef8bee5f44adcfaeb47171bf681c6d2664ba173 105e3fcdbe24162e7ac24d5be69b4d8a682c5612 1505298826a25a89f8ce88571d509aee9b07b1ff 1771330de5d9dba10e841f81e6a0de414ac6c9cb 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929de1c68018d6833c359b4a77cb1d1dcc887587 94e0f5aa3488c42263447bbcffe72f6e9152face 94fd128d2a6e538fa83beb77cf5a8c260978aaae 96731edb4a11287b9d4ccaaf95ed3c7515fa710e 991d993a78d1d79457d4bf9b84cd09f7465444b1 9a195a8bbc4c1364fa03e0c77ae79d4915f66036 9ba2857bd91fe530ce37a8066c7842daa8b35b2c 9c5cb386f1542333fc9ca9028639e090545252ef 9c73b0807de95929974ca49a9c9092181f9dc352 9d39741b70ebb632321a946c1d099bd149d8adda 9e2e27141f5be12031cdcd67a82cf61322a817b7 a059f9be6d57d51496846f18449882829abe1542 a534f3b43aed9fc6ec9d28891792dc2505b0283b a61a32bf9850a009db7961cd076ce235a2369f95 a6d7c82f39efb177af5ee06ca371f1f265a471ac a8eec57fc4bd889817c49b169c5f6641e9e0f413 ab48d615110329f15d574baf51dee5773ad54b96 acc1af1002d32a7e4ac30bee3ee0b3bd6bc25f7f ad1fe06d09a9057b8c1ab0ba660334551be69d9e ad6f3300634597bd29890cd0e6e063cf0152ebb1 aea21f34096a8b35f89b8fd1e7acc66447fc448f afa92daaf0e668e6cfc4d350230db9540ce0b157 b1023f9eb0d10054b0b06040cb71799fca90c8cb b1476ebbca232cb977c94d19dac605d8c6f9b2c4 b3f187dbe0b9617dfc8caf9e7f91b7223e4a960b b3f8d206ca7817c07f1f7ebb01b263402b96b908 b92545dc66234d56815cd26ef112521e897de317 b96cfe8645422eb871dcd1348defd9d73bb961d8 b9cc00487f11f63161cec85ea6a1725f72b71366 bbf3cdd3a426c6964fc43b8a15a079df7ac03f0b bcc824fd09022a0fde6683e2cf80a9e5586d5bd7 bd269f76fe48abf287c1303098bf911c8f2b2acc bd7d4708933a7bf0780766a8cd561876387a8bfe be7825ec569531dab8feece444a77d03e2a825a9 be7c882d37b50fe476745e15a493adf8efff25c7 c0dd25932f62ec8f2eda6b1b2666accbc7be65dc c0fb34d5de5dff38215f311285c3d86ca95c995f c28467ff7053b3db66e6caf0b6c8d4a881c48731 c2948b474dba0b2ecee94bbd113aa321f3757611 c5fdf5037c5eebb3d9a59319b459008dc583ea80 c7740fae159d5371a96654c42c923689de03538d ca84d93dfcc4b81608e11b1b99ea186c0aff5114 cbd59c36d7b86f94f8a7ac86146d73c540e14141 cc529fe3268962f6462dea3f84c2ba9f65ba492e ccb59fa49ee9ada819174849eeaf2701d7151284 cdb0dfb934f972d0de64a7362476b4a3deca8212 ce0647fb8d3c44b599b78933d5a35d55790d79f3 ce14969481dd70aba56d35db286c6ecb8477c5f3 d0dd1f242ca3d38b5352414db9b53bfea134b048 d17f51a2dfb607ee1f619efac205624966f29fe5 d5932f2b06486e878e0caa318b75d83b92fb8a86 d73ca2864fcfe86a8d56bf12ca11056f0bad7903 d904032ba5389cd6c80b45bd8e7e3986a8580a7e d90bb13cb2ad63ddc258a237df6fe30d6ef111dc dad66f9da2387b61213455fcd4ce091a9ef9102d de72ccc8445f3491057554a43427f635ddb40225 df9f3f996ba2b75cc9a228520902f5e3c36b7ddc e03c8427f2643d73d3f29b6500ed4ef2f86fe5dd e05870c62e5d5947de2864d05cb7ed5ea7d258f0 e111d5449127952929cdb53be5983d067c02f6e6 e1626e2c937d884a2387ca5054be01d60cce31a6 e3691491429b326f9dd32b13914c725cbbc18402 e42320ebf406fb61ea92911ccc1dc62f54ecd8c1 e59276ca653e5fd651eae7a05c14e66ba0db2ab8 e803b27e4f9c15d3be767b63b3ca811cdc575d6e e98a6d377084d0c89977133cf215ebd0492d8f34 e9ad3abc43ae7396e8cd7d2cc7ec8df571cd17eb eb39bdddd152bceadb220a3f401650a1aa44e1cf ec32a36222ab4568d30761977787c9e971677eee ecb43c77dfcf7bff834bb1c4c988b7bf13d5ddd4 ed9410744dc1c5fe383b0c7f3969deffad4ee570 ee285f92dcbb84d7556a73bd71b39f7128ac6a86 f1e2bcc796a8153460cf18de0c101546d3843df9 f22c811ec839401a94cb2da230b1f539bc6ce2ca f2539b76cffce771033ac339cb80064336e71792 f27a3d8b3df60064cc51f1d233a87def985227df f364d44ae7929dbf3caf957c41f8a54719fa8994 f3fd50359156596fb7fb7903e9d5c6de29e45fce f42ca6a67ff9e0841987fc8710c425ebe3946b6d f6139e0bd50b7be46ecc8ade2c8971c2199a74d4 f754ec6348ea479edd36d9c0bcf915651c9d12b9 f91f9f4dfd2926c9881d9399845e3a62293132e2 fa2791c502eb402675f5b2a51b8f51c3c9ac5d11 fb6e3029ad118cb9132eeecb306b3c475109127f fb9371d3fa6ba8cfdd48a78e09c7139d682faf5f fc18f954b1518c4816964815fe440ebdf17f3e5d ffc9aab9e5dd59323a518b570f029cb7b1927f29" -DSection=debug -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/openms/DEBIAN echo misc:Depends= >> debian/openms.substvars echo misc:Pre-Depends= >> debian/openms.substvars dpkg-gencontrol -popenms -ldebian/changelog -Tdebian/openms.substvars -cdebian/control -Pdebian/openms install -m0755 -d debian/openms-doc/DEBIAN echo misc:Depends= >> debian/openms-doc.substvars echo misc:Pre-Depends= >> debian/openms-doc.substvars dpkg-gencontrol -popenms-doc -ldebian/changelog -Tdebian/openms-doc.substvars -cdebian/control -Pdebian/openms-doc chmod 0644 -- debian/openms/DEBIAN/control chown 0:0 -- debian/openms/DEBIAN/control chmod 0644 -- debian/.debhelper/libopenms2.6.0/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/libopenms2.6.0/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibopenms2.6.0 -ldebian/changelog -Tdebian/libopenms2.6.0.substvars -cdebian/control -Pdebian/libopenms2.6.0 chmod 0644 -- debian/openms-common/DEBIAN/control chown 0:0 -- debian/openms-common/DEBIAN/control chmod 0644 -- debian/.debhelper/topp/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/topp/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptopp -ldebian/changelog -Tdebian/topp.substvars -cdebian/control -Pdebian/topp chmod 0644 -- debian/libopenms2.6.0/DEBIAN/control chown 0:0 -- debian/libopenms2.6.0/DEBIAN/control chmod 0644 -- debian/libopenms-dev/DEBIAN/control chown 0:0 -- debian/libopenms-dev/DEBIAN/control chmod 0644 -- debian/openms-doc/DEBIAN/control chown 0:0 -- debian/openms-doc/DEBIAN/control chmod 0644 -- debian/topp/DEBIAN/control chown 0:0 -- debian/topp/DEBIAN/control dh_md5sums -O--buildsystem=cmake -O--no-parallel install -m0755 -d debian/libopenms2.6.0/DEBIAN install -m0755 -d debian/openms/DEBIAN install -m0755 -d debian/openms-common/DEBIAN install -m0755 -d debian/topp/DEBIAN install -m0755 -d debian/openms-doc/DEBIAN install -m0755 -d debian/libopenms-dev/DEBIAN cd debian/libopenms2.6.0 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/openms >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/topp >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/openms/DEBIAN/md5sums chown 0:0 -- debian/openms/DEBIAN/md5sums cd debian/openms-common >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/openms-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libopenms-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libopenms-dev/DEBIAN/md5sums chown 0:0 -- debian/libopenms-dev/DEBIAN/md5sums chmod 0644 -- debian/topp/DEBIAN/md5sums chown 0:0 -- debian/topp/DEBIAN/md5sums install -m0755 -d debian/.debhelper/topp/dbgsym-root/DEBIAN chmod 0644 -- debian/libopenms2.6.0/DEBIAN/md5sums chown 0:0 -- debian/libopenms2.6.0/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libopenms2.6.0/dbgsym-root/DEBIAN cd debian/.debhelper/libopenms2.6.0/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/.debhelper/topp/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/openms-common/DEBIAN/md5sums chown 0:0 -- debian/openms-common/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/topp/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/topp/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/openms-doc/DEBIAN/md5sums chown 0:0 -- debian/openms-doc/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libopenms2.6.0/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/libopenms2.6.0/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=cmake -O--no-parallel dpkg-deb --build debian/libopenms2.6.0 .. dpkg-deb --root-owner-group --build debian/.debhelper/libopenms2.6.0/dbgsym-root .. dpkg-deb --build debian/libopenms-dev .. dpkg-deb --build debian/topp .. dpkg-deb --root-owner-group --build debian/.debhelper/topp/dbgsym-root .. dpkg-deb --build debian/openms-common .. dpkg-deb --build debian/openms-doc .. dpkg-deb --build debian/openms .. dpkg-deb: building package 'libopenms2.6.0' in '../libopenms2.6.0_2.6.0+cleaned1-4_amd64.deb'. dpkg-deb: building package 'libopenms2.6.0-dbgsym' in '../libopenms2.6.0-dbgsym_2.6.0+cleaned1-4_amd64.deb'. dpkg-deb: building package 'libopenms-dev' in '../libopenms-dev_2.6.0+cleaned1-4_amd64.deb'. dpkg-deb: building package 'openms' in '../openms_2.6.0+cleaned1-4_all.deb'. dpkg-deb: building package 'topp' in '../topp_2.6.0+cleaned1-4_amd64.deb'. dpkg-deb: building package 'openms-common' in '../openms-common_2.6.0+cleaned1-4_all.deb'. dpkg-deb: building package 'openms-doc' in '../openms-doc_2.6.0+cleaned1-4_all.deb'. dpkg-deb: building package 'topp-dbgsym' in '../topp-dbgsym_2.6.0+cleaned1-4_amd64.deb'. dpkg-genbuildinfo --build=binary -O../openms_2.6.0+cleaned1-4_amd64.buildinfo dpkg-genchanges --build=binary -O../openms_2.6.0+cleaned1-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/240904/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/240904/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/240904 and its subdirectories I: Current time: Tue Jul 1 18:03:44 +14 2025 I: pbuilder-time-stamp: 1751342624