I: pbuilder: network access will be disabled during build I: Current time: Sun Jul 6 10:46:08 +14 2025 I: pbuilder-time-stamp: 1751748368 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libtfbs-perl_0.7.1+ds-3.dsc] I: copying [./libtfbs-perl_0.7.1+ds.orig.tar.xz] I: copying [./libtfbs-perl_0.7.1+ds-3.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Mar 13 17:36:44 2024 gpgv: using RSA key 8182DE417056408D614650D16750F10AE88D4AF1 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libtfbs-perl_0.7.1+ds-3.dsc: no acceptable signature found dpkg-source: info: extracting libtfbs-perl in libtfbs-perl-0.7.1+ds dpkg-source: info: unpacking libtfbs-perl_0.7.1+ds.orig.tar.xz dpkg-source: info: unpacking libtfbs-perl_0.7.1+ds-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying configure.patch dpkg-source: info: applying spelling-errors.patch dpkg-source: info: applying gcc-14.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/229948/tmp/hooks/D01_modify_environment starting debug: Running on ionos5-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jul 5 20:46 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/229948/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/229948/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.21(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=54811758fc5c46398e126f44f2156a4f LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=229948 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4PrcNL6o/pbuilderrc_Fsbm --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4PrcNL6o/b2 --logfile b2/build.log libtfbs-perl_0.7.1+ds-3.dsc' SUDO_GID=110 SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.7.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.7.12-1~bpo12+1 (2024-05-06) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jul 4 14:06 /bin -> usr/bin I: user script /srv/workspace/pbuilder/229948/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-pdl, perl, pdl (>= 1:2.016), bioperl, libwww-perl, libdbi-perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19719 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-pdl; however: Package dh-sequence-pdl is not installed. pbuilder-satisfydepends-dummy depends on pdl (>= 1:2.016); however: Package pdl is not installed. pbuilder-satisfydepends-dummy depends on bioperl; however: Package bioperl is not installed. pbuilder-satisfydepends-dummy depends on libwww-perl; however: Package libwww-perl is not installed. pbuilder-satisfydepends-dummy depends on libdbi-perl; however: Package libdbi-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bioperl{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libabsl20230802{a} libaec0{a} libalgorithm-diff-perl{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libbio-perl-perl{a} libbrotli1{a} libbsd0{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libdata-stag-perl{a} libdav1d7{a} libdbi-perl{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libdevel-stacktrace-perl{a} libelf1t64{a} libencode-locale-perl{a} libexception-class-perl{a} libexpat1{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libgav1-1{a} libgd3{a} libgfortran5{a} libgsl27{a} libgslcblas0{a} libgssapi-krb5-2{a} libhdf4-0-alt{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnghttp2-14{a} libpipeline1{a} libpng16-16t64{a} libpod-parser-perl{a} libproj25{a} libpsl5t64{a} librav1e0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libsub-uplevel-perl{a} libsvtav1enc1d1{a} libsz2{a} libterm-readkey-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtiff6{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwebp7{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libxpm4{a} libyuv0{a} m4{a} man-db{a} netbase{a} openssl{a} pdl{a} perl-openssl-defaults{a} po-debconf{a} proj-data{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl krb5-locales libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libcache-cache-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgpm2 libgraph-perl libgraphviz-perl libheif-plugin-aomenc libheif-plugin-x265 libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl libldap-common liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpgplot-perl libpostscript-perl libsasl2-modules libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libterm-readline-gnu-perl libterm-readline-perl-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libyaml-perl lynx perl-doc perl-tk publicsuffix wget 0 packages upgraded, 133 newly installed, 0 to remove and 0 not upgraded. Need to get 54.9 MB of archives. After unpacking 191 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.22 [22.4 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3 [42.9 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.21-14+b1 [161 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-4 [1180 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.1-4 [95.7 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.71-3 [332 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.21-14 [496 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get: 23 http://deb.debian.org/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libtest-deep-perl all 1.204-1 [52.9 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libtest-differences-perl all 0.71-1 [17.9 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libtest-most-perl all 0.38-1 [25.1 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 bioperl all 1.7.8-1 [246 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-7 [517 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 41 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg-2 [670 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.15.3 [901 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libabsl20230802 amd64 20230802.1-4 [464 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.3-1 [23.4 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libaom3 amd64 3.8.2-2 [1869 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.4.2-1 [551 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libgav1-1 amd64 0.19.0-2+b1 [351 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 librav1e0 amd64 0.7.1-2 [900 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1 [113 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libsvtav1enc1d1 amd64 1.7.0+dfsg-2+b1 [2169 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libyuv0 amd64 0.0.1888.20240509-4 [170 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libavif16 amd64 1.0.4-3 [106 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libclone-perl amd64 0.46-1+b2 [13.7 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1 [22.9 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.20.1-6+b1 [33.3 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.20.1-6+b1 [79.8 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-3 [8952 B] Get: 70 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.20.1-6+b1 [333 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.20.1-6+b1 [135 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-6 [19.5 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-6 [56.9 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.17+dfsg-1 [186 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.61.0-1+b1 [75.6 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1 [56.8 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b4 [58.5 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.0-5 [215 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.8.0-1 [434 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libdbi-perl amd64 1.643-4+b2 [755 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libde265-0 amd64 1.0.15-1+b1 [187 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-dav1d amd64 1.17.6-1+b2 [9856 B] Get: 93 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-libde265 amd64 1.17.6-1+b2 [13.1 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libheif1 amd64 1.17.6-1+b2 [284 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1 [311 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.9-1+b1 [18.1 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3+b1 [24.3 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2 [144 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.7-1+b1 [799 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b1 [56.1 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libgd3 amd64 2.3.3-9+b3 [125 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.1.0-1 [836 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libgslcblas0 amd64 2.7.1+dfsg-6+b1 [107 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libgsl27 amd64 2.7.1+dfsg-6+b1 [934 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.3-1 [7740 B] Get: 110 http://deb.debian.org/debian unstable/main amd64 libhdf4-0-alt amd64 4.3.0-1 [267 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 5.28-1 [98.6 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libhtml-parser-perl amd64 3.82-1 [98.9 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libhttp-message-perl all 6.46-1 [79.7 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get: 121 http://deb.debian.org/debian unstable/main amd64 libnet-ssleay-perl amd64 1.94-1+b1 [339 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libio-socket-ssl-perl all 2.085-1 [218 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libwww-perl all 6.77-1 [183 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.5-2 [104 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 libpod-parser-perl all 1.67-1 [94.1 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 proj-data all 9.4.1-1 [6289 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libproj25 amd64 9.4.1-1 [1371 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-2+b3 [24.7 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 pdl amd64 1:2.089-1 [3730 kB] Fetched 54.9 MB in 1s (66.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19719 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.2.1-3_amd64.deb ... Unpacking openssl (3.2.1-3) ... 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Unpacking librav1e0:amd64 (0.7.1-2) ... Selecting previously unselected package libsharpyuv0:amd64. Preparing to unpack .../057-libsharpyuv0_1.4.0-0.1_amd64.deb ... Unpacking libsharpyuv0:amd64 (1.4.0-0.1) ... Selecting previously unselected package libsvtav1enc1d1:amd64. Preparing to unpack .../058-libsvtav1enc1d1_1.7.0+dfsg-2+b1_amd64.deb ... Unpacking libsvtav1enc1d1:amd64 (1.7.0+dfsg-2+b1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../059-libjpeg62-turbo_1%3a2.1.5-3_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.5-3) ... Selecting previously unselected package libyuv0:amd64. Preparing to unpack .../060-libyuv0_0.0.1888.20240509-4_amd64.deb ... Unpacking libyuv0:amd64 (0.0.1888.20240509-4) ... Selecting previously unselected package libavif16:amd64. Preparing to unpack .../061-libavif16_1.0.4-3_amd64.deb ... Unpacking libavif16:amd64 (1.0.4-3) ... Selecting previously unselected package libbrotli1:amd64. 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Unpacking libcurl3t64-gnutls:amd64 (8.8.0-1) ... Selecting previously unselected package libdbi-perl:amd64. Preparing to unpack .../079-libdbi-perl_1.643-4+b2_amd64.deb ... Unpacking libdbi-perl:amd64 (1.643-4+b2) ... Selecting previously unselected package libde265-0:amd64. Preparing to unpack .../080-libde265-0_1.0.15-1+b1_amd64.deb ... Unpacking libde265-0:amd64 (1.0.15-1+b1) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../081-libdeflate0_1.20-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.20-1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../082-libencode-locale-perl_1.05-3_all.deb ... Unpacking libencode-locale-perl (1.05-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../083-libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package libtimedate-perl. 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Setting up autopoint (0.21-14) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:amd64 (1.20.1-6+b1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-6) ... Setting up libgfortran5:amd64 (14.1.0-1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:amd64 (1.4.0-0.1) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up libdav1d7:amd64 (1.4.2-1) ... Setting up sensible-utils (0.0.22) ... Setting up libtiff6:amd64 (4.5.1+git230720-4) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up netbase (6.4) ... Setting up libabsl20230802:amd64 (20230802.1-4) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libkrb5-3:amd64 (1.20.1-6+b1) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up libssh2-1t64:amd64 (1.11.0-5) ... Setting up libterm-readkey-perl (2.38-2+b3) ... Setting up libde265-0:amd64 (1.0.15-1+b1) ... Setting up openssl (3.2.1-3) ... Setting up libbsd0:amd64 (0.12.2-1) ... Setting up libyuv0:amd64 (0.0.1888.20240509-4) ... Setting up libxml2:amd64 (2.12.7+dfsg-2) ... Setting up liburi-perl (5.28-1) ... Setting up libdbi-perl:amd64 (1.643-4+b2) ... Setting up libsz2:amd64 (1.1.3-1) ... Setting up libnet-ssleay-perl:amd64 (1.94-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3+b1) ... Setting up libxcb1:amd64 (1.17.0-2) ... Setting up gettext (0.21-14+b1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.4.7-7) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libldap-2.5-0:amd64 (2.5.17+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libtest-exception-perl (0.43-3) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-6+b1) ... Setting up libgav1-1:amd64 (0.19.0-2+b1) ... Setting up libhdf4-0-alt:amd64 (4.3.0-1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-4) ... Setting up libhtml-parser-perl:amd64 (3.82-1) ... Setting up libx11-6:amd64 (2:1.8.7-1+b1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up libhttp-message-perl (6.46-1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libavif16:amd64 (1.0.4-3) ... Setting up libxpm4:amd64 (1:3.5.17-1+b1) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libcurl3t64-gnutls:amd64 (8.8.0-1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up bioperl (1.7.8-1) ... Setting up libproj25:amd64 (9.4.1-1) ... Setting up debhelper (13.15.3) ... Setting up libheif-plugin-dav1d:amd64 (1.17.6-1+b2) ... Setting up libwww-perl (6.77-1) ... Setting up libheif1:amd64 (1.17.6-1+b2) ... Setting up libgd3:amd64 (2.3.3-9+b3) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libheif-plugin-libde265:amd64 (1.17.6-1+b2) ... Setting up pdl (1:2.089-1) ... Processing triggers for libc-bin (2.38-12) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/229948/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/229948/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/libtfbs-perl-0.7.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libtfbs-perl_0.7.1+ds-3_source.changes dpkg-buildpackage: info: source package libtfbs-perl dpkg-buildpackage: info: source version 0.7.1+ds-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Bas Couwenberg dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now" ------------------------------------------------- WARNING ------------------------------------------------- GD.pm does not seem to be installed. GD is reqired to produce "sequence logos" from information content matrices. If you need this functionality, please visit http://stein.cshl.org/WWW/software/GD/ for information on obtaining and installing GD. ------------------------------------------------- Do you have write access to a MySQL database server? [n] Checking if your kit is complete... Warning: the following files are missing in your kit: README Please inform the author. Writing MYMETA.yml and MYMETA.json Generating a Unix-style Makefile Writing Makefile for TFBS Writing MYMETA.yml and MYMETA.json dh_auto_build make -j42 make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' make[2]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds/Ext' "/usr/bin/perl" "/usr/share/perl/5.38.2/ExtUtils/xsubpp" -typemap '/usr/share/perl/5.38/ExtUtils/typemap' pwmsearch.xs > pwmsearch.xsc Running Mkbootstrap for pwmsearch () chmod 644 "pwmsearch.bs" "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- pwmsearch.bs ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.bs 644 Skip ../blib/lib/pwm_search.h (unchanged) cp lib/pwm_searchPFF.c ../blib/lib/pwm_searchPFF.c Skip ../blib/lib/TFBS/Ext/pwmsearch.pm (unchanged) Skip blib/lib/TFBS/DB.pm (unchanged) cp TFBS/DB/JASPAR5.pm blib/lib/TFBS/DB/JASPAR5.pm cp TFBS/PatternGen/YMF.pm blib/lib/TFBS/PatternGen/YMF.pm Skip blib/lib/TFBS/PatternGen/MEME/Motif.pm (unchanged) Skip blib/lib/TFBS/Tools/SetOperations.pm (unchanged) Skip blib/lib/TFBS/PatternGen/Elph/Motif.pm (unchanged) Skip blib/lib/TFBS/PatternGen/AnnSpec/Motif.pm (unchanged) Skip blib/lib/TFBS/DB/LocalTRANSFAC.pm (unchanged) cp TFBS/PatternGen/AnnSpec.pm blib/lib/TFBS/PatternGen/AnnSpec.pm cp TFBS/DB/TRANSFAC.pm blib/lib/TFBS/DB/TRANSFAC.pm Skip blib/lib/TFBS/PatternGen/Motif/Matrix.pm (unchanged) cp TFBS/Matrix/ICM.pm blib/lib/TFBS/Matrix/ICM.pm cp TFBS/TFFM.pm blib/lib/TFBS/TFFM.pm Skip blib/lib/TFBS/PatternGen/Motif/Word.pm (unchanged) cp TFBS/DB/JASPAR6.pm blib/lib/TFBS/DB/JASPAR6.pm Skip blib/lib/TFBS/Matrix/_Alignment.pm (unchanged) cp TFBS/README.md blib/lib/TFBS/README.md Skip blib/lib/TFBS/PatternGen/SimplePFM.pm (unchanged) cp TFBS/Matrix.pm blib/lib/TFBS/Matrix.pm cp TFBS/DB/JASPAR4.pm blib/lib/TFBS/DB/JASPAR4.pm Skip blib/lib/TFBS/Matrix/PWM.pm (unchanged) Skip blib/lib/TFBS/PatternI.pm (unchanged) cp TFBS/DB/FlatFileDir.pm blib/lib/TFBS/DB/FlatFileDir.pm cp TFBS/SitePair.pm blib/lib/TFBS/SitePair.pm cp TFBS/DB/JASPAR7.pm blib/lib/TFBS/DB/JASPAR7.pm Skip blib/lib/TFBS/PatternGen/Elph.pm (unchanged) cp TFBS/ConservationProfile.pm blib/lib/TFBS/ConservationProfile.pm cp TFBS/DB/JASPAR.pm blib/lib/TFBS/DB/JASPAR.pm cp TFBS/Run/ConservationProfileGenerator.pm blib/lib/TFBS/Run/ConservationProfileGenerator.pm Skip blib/lib/TFBS/PatternGen/MEME.pm (unchanged) Skip blib/lib/TFBS/SiteSet.pm (unchanged) Skip blib/lib/TFBS/PatternGen/YMF/Motif.pm (unchanged) Skip blib/lib/TFBS/PatternGenI.pm (unchanged) Skip blib/lib/TFBS/PatternGen/Gibbs.pm (unchanged) cp TFBS/Matrix/PFM.pm blib/lib/TFBS/Matrix/PFM.pm cp TFBS/Matrix/Alignment.pm blib/lib/TFBS/Matrix/Alignment.pm Skip blib/lib/TFBS/Site.pm (unchanged) Skip blib/lib/TFBS/SitePairSet.pm (unchanged) Skip blib/lib/TFBS/DB/JASPAR2.pm (unchanged) cp TFBS/PatternGen.pm blib/lib/TFBS/PatternGen.pm Skip blib/lib/TFBS/PatternGen/Gibbs/Motif.pm (unchanged) cp TFBS/MatrixSet.pm blib/lib/TFBS/MatrixSet.pm Please specify prototyping behavior for pwmsearch.xs (see perlxs manual) mv pwmsearch.xsc pwmsearch.c x86_64-linux-gnu-gcc -c -I. -I./lib -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"0.2\" -DXS_VERSION=\"0.2\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.38/CORE" pwmsearch.c Skip blib/lib/TFBS/_Iterator.pm (unchanged) cp TFBS/_Iterator/_MatrixSetIterator.pm blib/lib/TFBS/_Iterator/_MatrixSetIterator.pm Skip blib/lib/TFBS/Word/Consensus.pm (unchanged) cp TFBS/_Iterator/_SiteSetIterator.pm blib/lib/TFBS/_Iterator/_SiteSetIterator.pm Skip blib/lib/TFBS/Word.pm (unchanged) In file included from pwmsearch.xs:4: ./lib/pwm_searchPFF.c:303:1: warning: return type defaults to 'int' [-Wimplicit-int] 303 | get_sequence(fp,seq_id,sequence) | ^~~~~~~~~~~~ ./lib/pwm_searchPFF.c:414:1: warning: return type defaults to 'int' [-Wimplicit-int] 414 | best_pull(pargs,pbase,pstrand,pscore) | ^~~~~~~~~ rm -f ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libtfbs-perl-0.7.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -shared -L/usr/local/lib -fstack-protector-strong pwmsearch.o -o ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so \ -lm \ chmod 755 ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.so Manifying 1 pod document make[2]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds/Ext' Manifying 35 pod documents make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' prove --blib t/01_Matrix.t t/02_Search.t t/03_DB_FlatFileDir.t t/05_DB_JASPAR.t t/06_SimplePFM.t t/07_AnnSpec.t t/07_Elph.t t/07_Gibbs.t t/07_MEME.t t/08_DB_LocalTRANSFAC.t t/09_Word_Consensus.t t/10_Tools_SetOperations.t Ext/t/*.t Possible precedence issue with control flow operator at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/01_Matrix.t ............... ok Possible precedence issue with control flow operator at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/02_Search.t ............... ok Possible precedence issue with control flow operator at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/03_DB_FlatFileDir.t ....... ok Possible precedence issue with control flow operator at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/05_DB_JASPAR.t ............ ok Possible precedence issue with control flow operator at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/06_SimplePFM.t ............ ok Possible precedence issue with control flow operator at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/07_AnnSpec.t .............. ok Possible precedence issue with control flow operator at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/07_Elph.t ................. ok Possible precedence issue with control flow operator at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/07_Gibbs.t ................ ok Possible precedence issue with control flow operator at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/07_MEME.t ................. ok Possible precedence issue with control flow operator at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/08_DB_LocalTRANSFAC.t ..... ok Possible precedence issue with control flow operator at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/09_Word_Consensus.t ....... ok Possible precedence issue with control flow operator at /build/reproducible-path/libtfbs-perl-0.7.1+ds/blib/lib/TFBS/Matrix/_Alignment.pm line 152. t/10_Tools_SetOperations.t .. ok Ext/t/pwmsearch.t ........... ok All tests successful. Files=13, Tests=45, 2 wallclock secs ( 0.06 usr 0.02 sys + 2.41 cusr 0.35 csys = 2.84 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libtfbs-perl/ make -j42 install DESTDIR=/build/reproducible-path/libtfbs-perl-0.7.1\+ds/debian/libtfbs-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' make[2]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds/Ext' "/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- pwmsearch.bs ../blib/arch/auto/TFBS/Ext/pwmsearch/pwmsearch.bs 644 Manifying 1 pod document make[2]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds/Ext' Manifying 35 pod documents Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/auto/TFBS/Ext/pwmsearch/pwmsearch.so Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/auto/TFBS/Ext/pwmsearch/pwmsearch.bundle Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/pwm_searchPFF.c Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/pwm_search.h Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/ConservationProfile.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/Word.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/PatternGenI.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/PatternI.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/PatternGen.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/DB.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/TFFM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/Matrix.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/Site.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/SitePairSet.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/README.md Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/_Iterator.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/SiteSet.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/SitePair.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/MatrixSet.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/Tools/SetOperations.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/Word/Consensus.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/DB/JASPAR4.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/DB/FlatFileDir.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/DB/JASPAR.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/DB/JASPAR5.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/DB/JASPAR7.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/DB/LocalTRANSFAC.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/DB/JASPAR6.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/DB/JASPAR2.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/DB/TRANSFAC.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/Run/ConservationProfileGenerator.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/_Iterator/_SiteSetIterator.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/_Iterator/_MatrixSetIterator.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/Ext/pwmsearch.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/PatternGen/SimplePFM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/PatternGen/Gibbs.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/PatternGen/MEME.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/PatternGen/AnnSpec.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/PatternGen/Elph.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/PatternGen/YMF.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/PatternGen/YMF/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/PatternGen/AnnSpec/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/PatternGen/Elph/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/PatternGen/Gibbs/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/PatternGen/MEME/Motif.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/PatternGen/Motif/Word.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/PatternGen/Motif/Matrix.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/Matrix/Alignment.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/Matrix/_Alignment.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/Matrix/PWM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/Matrix/PFM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/lib/x86_64-linux-gnu/perl5/5.38/TFBS/Matrix/ICM.pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::PFM.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternI.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR7.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR5.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::PWM.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::YMF::Motif.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::MatrixSet.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::SimplePFM.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::MEME::Motif.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::YMF.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Ext::pwmsearch.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::ICM.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Site.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::MEME.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::SitePairSet.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Word::Consensus.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Elph.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::SitePair.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Gibbs::Motif.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Gibbs.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Matrix::Alignment.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::LocalTRANSFAC.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::TRANSFAC.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::Word.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR2.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::SiteSet.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::AnnSpec::Motif.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR4.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::JASPAR6.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::Elph::Motif.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::TFFM.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::PatternGen::AnnSpec.3pm Installing /build/reproducible-path/libtfbs-perl-0.7.1+ds/debian/libtfbs-perl/usr/share/man/man3/TFBS::DB::FlatFileDir.3pm make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' dh_installdocs dh_installchangelogs debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' dh_installexamples mkdir -p debian/libtfbs-perl/usr/share/doc/libtfbs-perl/examples/Ext cp -a Ext/t debian/libtfbs-perl/usr/share/doc/libtfbs-perl/examples/Ext for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' dh_installman dh_lintian dh_perl dh_pdl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' dh_fixperms find debian -name pwmsearch.bundle -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/libtfbs-perl-0.7.1+ds' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libtfbs-perl' in '../libtfbs-perl_0.7.1+ds-3_amd64.deb'. dpkg-deb: building package 'libtfbs-perl-dbgsym' in '../libtfbs-perl-dbgsym_0.7.1+ds-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libtfbs-perl_0.7.1+ds-3_amd64.buildinfo dpkg-genchanges --build=binary -O../libtfbs-perl_0.7.1+ds-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/229948/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/229948/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/229948 and its subdirectories I: Current time: Sun Jul 6 10:47:27 +14 2025 I: pbuilder-time-stamp: 1751748447